# Conda environment, that includes all packages that are necessary for # the complete Biotite development process. name: biotite-dev channels: - anaconda - conda-forge - salilab - bioconda dependencies: - python =3.10 # Package building - cython >=3.0 - pip >=10.0 - setuptools >=30.0 - wheel >=0.30 # Biotite dependencies - msgpack-python >=0.5.6 - networkx >=2.0 - numpy >=1.15, <2.0 - requests >=2.12 # Testing - mdtraj >=1.9.3 - pytest >=5.2 # Interfaced software in biotite.application - autodock-vina - clustalo - dssp - mafft - muscle =3 - sra-tools - tantan - viennarna >=2.5.0 # Documentation building - matplotlib >=3.3 - numpydoc >=0.8 - sphinx >=5.0 - sphinxcontrib-bibtex >=2.3 - sphinx-gallery =0.15.0 # Extra packages used in example gallery - pandas >=1.5.2 - pydot >=1.4 - scikit-learn >=0.18 - scipy >=1.8.0