{ "cells": [ { "cell_type": "markdown", "metadata": { "deletable": true, "editable": true }, "source": [ "# [Prody](http://prody.csb.pitt.edu) is an open-source Python package for protein structural dynamics analysis with expansive and well-written API." ] }, { "cell_type": "code", "execution_count": 7, "metadata": { "collapsed": false, "deletable": true, "editable": true, "scrolled": true }, "outputs": [], "source": [ "import prody\n", "prot = prody.parsePDB('3UB5')" ] }, { "cell_type": "markdown", "metadata": { "deletable": true, "editable": true }, "source": [ "The default visualization in ProDy uses matplotlib." ] }, { "cell_type": "code", "execution_count": 8, "metadata": { "collapsed": false, "deletable": true, "editable": true }, "outputs": [ { "data": { "text/html": [ "