---

api_key: admin
galaxy_instance: http://localhost:8080
install_resolver_dependencies: true
install_tool_dependencies: false
tools:

# quality_control
- name: 'fastqc'
  owner: 'devteam'
  tool_panel_section_id: 'quality_control'

- name: 'prinseq'
  owner: 'iuc'
  tool_panel_section_id: 'quality_control'

- name: 'trim_galore'
  owner: 'bgruening'
  tool_panel_section_id: 'quality_control'

- name: 'trimmomatic'
  owner: 'pjbriggs'
  tool_panel_section_id: 'quality_control'

- name: 'multiqc'
  owner: 'iuc'
  tool_panel_section_id: 'quality_control'

# clustering
- name: 'cdhit'
  owner: 'bebatut'
  tool_panel_section_id: 'clustering'
  install_resolver_dependencies: false

- name: 'format_cd_hit_output'
  owner: 'bebatut'
  tool_panel_section_id: 'clustering'

# sorting and prediction
- name: 'sortmerna'
  owner: 'rnateam'
  tool_panel_section_id: 'sorting_prediction'

- name: 'data_manager_sortmerna_database_downloader'
  owner: 'rnateam'
  tool_panel_section_id: 'sorting_prediction'

- name: 'fraggenescan'
  owner: 'iuc'
  tool_panel_section_id: 'sorting_prediction'
  install_resolver_dependencies: false

# similarity_search
- name: 'ncbi_blast_plus'
  owner: 'devteam'
  tool_panel_section_id: 'similarity_search_alignment'
  install_resolver_dependencies: false

- name: 'diamond'
  owner: 'bgruening'
  tool_panel_section_id: 'similarity_search_alignment'
  install_resolver_dependencies: false

- name: 'hmmer3'
  owner: 'iuc'
  tool_panel_section_id: 'similarity_search_alignment'
  install_resolver_dependencies: false

# mapping
- name: 'bwa'
  owner: 'devteam'
  tool_panel_section_id: 'mapping'
  install_resolver_dependencies: false

- name: 'bowtie2'
  owner: 'devteam'
  tool_panel_section_id: 'mapping'
  install_resolver_dependencies: false

 # visualization
- name: 'export2graphlan'
  owner: 'iuc'
  tool_panel_section_id: 'visualization'

- name: 'suite_graphlan'
  owner: 'iuc'
  tool_panel_section_id: 'visualization'

- name: 'taxonomy_krona_chart'
  owner: 'crs4'
  tool_panel_section_id: 'visualization'

- name: 'interproscan5'
  owner: 'bgruening'
  tool_panel_section_id: 'metabolism_assignation'
  install_resolver_dependencies: false

- name: 'suite_picrust'
  owner: 'iuc'
  tool_panel_section_id: 'metabolism_assignation'
  install_resolver_dependencies: false

# combination_taxo_func
- name: 'combine_metaphlan2_humann2'
  owner: 'bebatut'
  tool_panel_section_id: 'combination_taxo_func'