SEOnt
type: Ontology
version IRI: seont-full.owl
description: None
license: unspecified

is a defining property chain axiom
type: AnnotationProperty
IAO_0000115: If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL

is a defining property chain axiom where second argument is reflexive
type: AnnotationProperty
IAO_0000115: If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R.

part of
type: ObjectProperty
equivalent property:
  inverse of: has part
sub property of: overlaps
inverse of: has part
type: TransitiveProperty
IAO_0000111: is part of
IAO_0000112: my brain is part of my body (continuant parthood, two material entities)
IAO_0000112: my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)
IAO_0000112: this day is part of this year (occurrent parthood)
IAO_0000115: a core relation that holds between a part and its whole
IAO_0000116: Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.
IAO_0000116: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
IAO_0000116: Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.) A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'.
IAO_0000118: part_of
IAO_0000412: obi.owl
IAO_0000412: ro.owl
RO_0001900: RO_0001901
RO_0040042: continuant
RO_0040042: occurrent
RO_0040042: independent continuant
RO_0040042: realizable entity
RO_0040042: quality
RO_0040042: specifically dependent continuant
RO_0040042: generically dependent continuant
has db xref: BFO:0000050
has OBO namespace: external
has OBO namespace: quality
id: part_of
shorthand: part_of
label: part_of

has part
type: ObjectProperty
equivalent property:
  inverse of: part of
sub property of: overlaps
type: TransitiveProperty
IAO_0000111: has part
IAO_0000112: my body has part my brain (continuant parthood, two material entities)
IAO_0000112: my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)
IAO_0000112: this year has part this day (occurrent parthood)
IAO_0000115: Q1 has_part Q2 if and only if: every instance of Q1 is a quality_of an entity that has_quality some Q2.
IAO_0000115: a core relation that holds between a whole and its part
IAO_0000116: Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part.
IAO_0000116: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
IAO_0000116: Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.) A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'.
IAO_0000118: has_part
IAO_0000412: ro.owl
RO_0001900: RO_0001901
has db xref: BFO:0000051
has OBO namespace: external
has OBO namespace: quality
id: has_part
shorthand: has_part
comment: We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'.
label: has_part

Axiom
annotated source: has part
annotated property: IAO_0000115
annotated target: Q1 has_part Q2 if and only if: every instance of Q1 is a quality_of an entity that has_quality some Q2.
has db xref: PATOC:CJM

preceded by
type: ObjectProperty
sub property of: ends after
inverse of: precedes
type: TransitiveProperty
domain: occurrent
range: occurrent
property chain axiom: part of
IAO_0000111: preceded by
IAO_0000115: x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
IAO_0000116: An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other.
IAO_0000118: is preceded by
IAO_0000118: preceded_by
source: http://www.obofoundry.org/ro/#OBO_REL:preceded_by
in subset: ro-eco

precedes
type: ObjectProperty
sub property of: temporally related to
type: TransitiveProperty
domain: occurrent
range: occurrent
property chain axiom: part of
IAO_0000111: precedes
IAO_0000115: x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
in subset: ro-eco

occurs in
type: ObjectProperty
inverse of: contains process
domain: occurrent
range: independent continuant
property chain axiom: part of
IAO_0000111: occurs in
IAO_0000115: b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t
IAO_0000118: occurs_in
IAO_0000118: unfolds in
IAO_0000118: unfolds_in
comment: Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant

contains process
type: ObjectProperty
IAO_0000111: site of
IAO_0000115: [copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t
comment: Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant

partially_surrounded_by
type: ObjectProperty
IAO_0000112: A duck swimming in a pond is partially surrounded by air and partially surrounded by water.
IAO_0000115: x partially_surrounded_by y if and only if (1) x is adjacent to y and for the region r that is adjacent to x, r partially overlaps y (2) the shared boundary between x and y occupies a non-trivial proportion of the outermost boundary of x
comment: Definition modified from 'surrounded by'.

is about
type: ObjectProperty
domain: information content entity
IAO_0000112: This document is about information artifacts and their representations
IAO_0000114: pending final vetting
IAO_0000115: is_about is a (currently) primitive relation that relates an information artifact to an entity.
IAO_0000116: 7/6/2009 Alan Ruttenberg. Following discussion with Jonathan Rees, and introduction of "mentions" relation. Weaken the is_about relationship to be primitive. We will try to build it back up by elaborating the various subproperties that are more precisely defined. Some currently missing phenomena that should be considered "about" are predications - "The only person who knows the answer is sitting beside me" , Allegory, Satire, and other literary forms that can be topical without explicitly mentioning the topic.
IAO_0000117: person:Alan Ruttenberg
IAO_0000119: Smith, Ceusters, Ruttenberg, 2000 years of philosophy

denotes
type: ObjectProperty
sub property of: is about
inverse of: denoted by
domain: information content entity
range: entity
IAO_0000112: A person's name denotes the person. A variable name in a computer program denotes some piece of memory. Lexically equivalent strings can denote different things, for instance "Alan" can denote different people. In each case of use, there is a case of the denotation relation obtaining, between "Alan" and the person that is being named.
IAO_0000115: denotes is a primitive, instance-level, relation obtaining between an information content entity and some portion of reality. Denotation is what happens when someone creates an information content entity E in order to specifically refer to something. The only relation between E and the thing is that E can be used to 'pick out' the thing. This relation connects those two together. Freedictionary.com sense 3: To signify directly; refer to specifically
IAO_0000116: 2009-11-10 Alan Ruttenberg. Old definition said the following to emphasize the generic nature of this relation. We no longer have 'specifically denotes', which would have been primitive, so make this relation primitive. g denotes r =def r is a portion of reality there is some c that is a concretization of g every c that is a concretization of g specifically denotes r
IAO_0000117: person:Alan Ruttenberg
IAO_0000119: Conversations with Barry Smith, Werner Ceusters, Bjoern Peters, Michel Dumontier, Melanie Courtot, James Malone, Bill Hogan

denoted by
type: ObjectProperty
domain: entity
range: information content entity
IAO_0000115: inverse of the relation 'denotes'
IAO_0000117: Person: Jie Zheng, Chris Stoeckert, Mike Conlon
IAO_0000233: https://github.com/information-artifact-ontology/IAO/issues/206

inheres in
type: ObjectProperty
equivalent property:
  inverse of: bearer of
sub property of: inheres in part of
inverse of: bearer of
IAO_0000111: inheres in
IAO_0000112: this fragility inheres in this vase
IAO_0000112: this red color inheres in this apple
IAO_0000115: a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence
IAO_0000116: A dependent inheres in its bearer at all times for which the dependent exists.
IAO_0000118: inheres_in
IAO_0000412: obi.owl
IAO_0000412: ro.owl
RO_0001900: RO_0001901

bearer of
type: ObjectProperty
equivalent property:
  inverse of: inheres in
range: specifically dependent continuant
IAO_0000111: bearer of
IAO_0000112: this apple is bearer of this red color
IAO_0000112: this vase is bearer of this fragility
IAO_0000115: a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence
IAO_0000116: A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist.
IAO_0000118: bearer_of
IAO_0000118: is bearer of
IAO_0000412: ro.owl
RO_0001900: RO_0001901

participates in
type: ObjectProperty
equivalent property:
  inverse of: has participant
inverse of: has participant
domain: continuant
range: occurrent
IAO_0000111: participates in
IAO_0000112: this blood clot participates in this blood coagulation
IAO_0000112: this input material (or this output material) participates in this process
IAO_0000112: this investigator participates in this investigation
IAO_0000115: a relation between a continuant and a process, in which the continuant is somehow involved in the process
IAO_0000118: participates_in
IAO_0000412: ro.owl

has participant
type: ObjectProperty
equivalent property:
  inverse of: participates in
domain: occurrent
range: continuant
property chain axiom: has part
IAO_0000111: has participant
IAO_0000112: this blood coagulation has participant this blood clot
IAO_0000112: this investigation has participant this investigator
IAO_0000112: this process has participant this input material (or this output material)
IAO_0000115: a relation between a process and a continuant, in which the continuant is somehow involved in the process
IAO_0000116: Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time.
IAO_0000118: has_participant
IAO_0000412: ro.owl
source: http://www.obofoundry.org/ro/#OBO_REL:has_participant

is concretized as
type: ObjectProperty
equivalent property:
  inverse of: concretizes
inverse of: concretizes
domain: generically dependent continuant
range: specifically dependent continuant
IAO_0000112: A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The journal article (a generically dependent continuant) is concretized as the quality (a specifically dependent continuant), and both depend on that copy of the printed journal (an independent continuant).
IAO_0000112: An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process).
IAO_0000115: A relationship between a generically dependent continuant and a specifically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants.

concretizes
type: ObjectProperty
equivalent property:
  inverse of: is concretized as
domain: specifically dependent continuant
range: generically dependent continuant
IAO_0000112: A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The quality (a specifically dependent continuant) concretizes the journal article (a generically dependent continuant), and both depend on that copy of the printed journal (an independent continuant).
IAO_0000112: An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process).
IAO_0000115: A relationship between a specifically dependent continuant and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. Multiple specifically dependent continuants can concretize the same generically dependent continuant.

quality of
type: ObjectProperty
sub property of: inheres in
inverse of: has quality
IAO_0000112: this red color is a quality of this apple
IAO_0000115: a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence
IAO_0000116: A quality inheres in its bearer at all times for which the quality exists.
IAO_0000118: is quality of
IAO_0000118: quality_of

role of
type: ObjectProperty
equivalent property:
  inverse of: has role
sub property of: inheres in
inverse of: has role
IAO_0000112: this investigator role is a role of this person
IAO_0000115: a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence
IAO_0000116: A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists.
IAO_0000118: is role of
IAO_0000118: role_of
IAO_0000412: ro.owl

has quality
type: ObjectProperty
sub property of: bearer of
range: quality
IAO_0000112: this apple has quality this red color
IAO_0000115: a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence
IAO_0000116: A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist.
IAO_0000118: has_quality

has role
type: ObjectProperty
equivalent property:
  inverse of: role of
sub property of: bearer of
domain: independent continuant
range: role
IAO_0000112: this person has role this investigator role (more colloquially: this person has this role of investigator)
IAO_0000115: a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence
IAO_0000116: A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists.
IAO_0000118: has_role
IAO_0000412: ro.owl

derives from
type: ObjectProperty
inverse of: derives into
type: ReflexiveProperty
IAO_0000112: this cell derives from this parent cell (cell division)
IAO_0000112: this nucleus derives from this parent nucleus (nuclear division)
IAO_0000114: pending final vetting
IAO_0000115: a relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity
IAO_0000116: This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops from'.
IAO_0000118: derives_from
IAO_0000232: This relation is taken from the RO2005 version of RO. It may be obsoleted and replaced by relations with different definitions. See also the 'develops from' family of relations.
IAO_0000412: ro.owl
in subset: ro-eco

derives into
type: ObjectProperty
IAO_0000112: this parent cell derives into this cell (cell division)
IAO_0000112: this parent nucleus derives into this nucleus (nuclear division)
IAO_0000114: pending final vetting
IAO_0000115: a relation between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity
IAO_0000116: This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops into'. To avoid making statements about a future that may not come to pass, it is often better to use the backward-looking 'derives from' rather than the forward-looking 'derives into'.
IAO_0000118: derives_into
IAO_0000412: ro.owl
in subset: ro-eco

location of
type: ObjectProperty
equivalent property:
  inverse of: located in
inverse of: located in
type: TransitiveProperty
IAO_0000111: is location of
IAO_0000112: my head is the location of my brain
IAO_0000112: this cage is the location of this rat
IAO_0000115: a relation between two independent continuants, the location and the target, in which the target is entirely within the location
IAO_0000116: Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
IAO_0000118: location_of
RO_0001900: RO_0001901

contained in
type: ObjectProperty
inverse of: contains
domain: material entity
range: independent continuant
property chain axiom: located in
property chain axiom: part of
IAO_0000111: contained in
IAO_0000116: Containment is location not involving parthood, and arises only where some immaterial continuant is involved.
IAO_0000116: Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t. The containment relation on the instance level can then be defined (see definition):
IAO_0000116: Intended meaning: domain: material entity range: spatial region or site (immaterial continuant)
IAO_0000118: contained_in
RO_0001900: RO_0001901
in subset: ro-eco

contains
type: ObjectProperty
IAO_0000111: contains
RO_0001900: RO_0001901
in subset: ro-eco

located in
type: ObjectProperty
equivalent property:
  inverse of: location of
type: TransitiveProperty
IAO_0000111: located in
IAO_0000112: my brain is located in my head
IAO_0000112: this rat is located in this cage
IAO_0000115: a relation between two independent continuants, the target and the location, in which the target is entirely within the location
IAO_0000116: Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus
IAO_0000116: Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
IAO_0000118: located_in
RO_0001900: RO_0001901
source: http://www.obofoundry.org/ro/#OBO_REL:located_in

has regulatory component activity
type: ObjectProperty
sub property of: has component activity
sub property of: regulated by
IAO_0000115: A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B.
created by: dos
creation date: 2017-05-24T09:30:46Z

has negative regulatory component activity
type: ObjectProperty
sub property of: has regulatory component activity
sub property of: negatively regulated by
IAO_0000115: A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B.
created by: dos
creation date: 2017-05-24T09:31:01Z
comment: By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'.

has positive regulatory component activity
type: ObjectProperty
sub property of: has regulatory component activity
sub property of: positively regulated by
IAO_0000115: A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.
created by: dos
creation date: 2017-05-24T09:31:17Z
comment: By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'.

has component activity
type: ObjectProperty
sub property of: has component process
created by: dos
creation date: 2017-05-24T09:44:33Z
comment: A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B.

has component process
type: ObjectProperty
sub property of: has component
domain: process
range: process
IAO_0000115: w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.
created by: dos
creation date: 2017-05-24T09:49:21Z

has ligand
type: ObjectProperty
sub property of: has input
domain: receptor activity
IAO_0000115: A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function.

directly regulated by
type: ObjectProperty
sub property of: regulated by
inverse of: directly regulates
created by: dos
creation date: 2017-09-17T13:52:24Z
comment: Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.

Axiom
annotated source: directly regulated by
annotated property: comment
annotated target: Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.
has db xref: GOC:dos

directly negatively regulated by
type: ObjectProperty
sub property of: directly regulated by
inverse of: directly negatively regulates
IAO_0000115: Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.
created by: dos
creation date: 2017-09-17T13:52:38Z

Axiom
annotated source: directly negatively regulated by
annotated property: IAO_0000115
annotated target: Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.
has db xref: GOC:dos

directly positively regulated by
type: ObjectProperty
sub property of: directly regulated by
inverse of: directly positively regulates
IAO_0000115: Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.
created by: dos
creation date: 2017-09-17T13:52:47Z

Axiom
annotated source: directly positively regulated by
annotated property: IAO_0000115
annotated target: Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.
has db xref: GOC:dos

has effector activity
type: ObjectProperty
sub property of: has component activity
sub property of: regulates
type: FunctionalProperty
IAO_0000115: A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.
created by: dos
creation date: 2017-09-22T14:14:36Z
comment: This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations.

Axiom
annotated source: has effector activity
annotated property: IAO_0000115
annotated target: A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.
has db xref: GOC:dos

during which ends
type: ObjectProperty
sub property of: temporally related to
inverse of: ends during
IAO_0000117: David Osumi-Sutherland
in subset: ro-eco
comment: Previously had ID http://purl.obolibrary.org/obo/RO_0002122 in test files in sandpit - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line. Official ID now chosen from DOS ID range.

ends after
type: ObjectProperty
sub property of: temporally related to
type: TransitiveProperty
property chain axiom: ends during
property chain axiom: preceded by
IAO_0000117: David Osumi-Sutherland
in subset: ro-eco
comment: X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)

immediately preceded by
type: ObjectProperty
sub property of: preceded by
inverse of: immediately precedes
IAO_0000117: David Osumi-Sutherland
IAO_0000118: starts_at_end_of
comment: X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)

immediately precedes
type: ObjectProperty
sub property of: precedes
IAO_0000117: David Osumi-Sutherland
IAO_0000118: ends_at_start_of
IAO_0000118: meets
RO_0002575: precedes
in subset: ro-eco
comment: X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)

ends during
type: ObjectProperty
sub property of: temporally related to
IAO_0000117: David Osumi-Sutherland
IAO_0000118: o
IAO_0000118: overlaps
in subset: ro-eco
comment: X ends_during Y iff: ((start(Y) before_or_simultaneous_with end(X)) AND end(X) before_or_simultaneous_with end(Y).

overlaps
type: ObjectProperty
sub property of: mereotopologically related to
property chain axiom: part of
property chain axiom: has part
IAO_0000114: pending final vetting
IAO_0000115: x overlaps y if and only if there exists some z such that x has part z and z part of y
IAO_0000412: ro.owl
IAO_0000424: http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)
RO_0001900: RO_0001901
in subset: ro-eco

Axiom
annotated source: overlaps
annotated property: propertyChainAxiom
annotated target: has part
annotated target: part of
RO_0002582: true

Axiom
annotated source: overlaps
annotated property: propertyChainAxiom
annotated target: has part
annotated target: part of
http://purl.obolibrary.org/obo/ro 0002582: true

only in taxon
type: ObjectProperty
sub property of: in taxon
IAO_0000115: x only in taxon y if and only if x is in taxon y, and there is no other organism z such that y!=z a and x is in taxon z.

in taxon
type: ObjectProperty
sub property of: evolutionarily related to
range: organism or virus or viroid
property chain axiom: part of
property chain axiom: has part
property chain axiom: capable of
property chain axiom: actively participates in
IAO_0000115: x is in taxon y if an only if y is an organism, and the relationship between x and y is one of: part of (reflexive), developmentally preceded by, derives from, secreted by, expressed.

spatially disjoint from
type: ObjectProperty
sub property of: mereotopologically related to
IAO_0000114: pending final vetting
IAO_0000115: A is spatially_disjoint_from B if and only if they have no parts in common
IAO_0000116: There are two ways to encode this as a shortcut relation. The other possibility to use an annotation assertion between two classes, and expand this to a disjointness axiom.
IAO_0000117: Chris Mungall
IAO_0000119: http://www.ncbi.nlm.nih.gov/pubmed/22293552
IAO_0000232: Note that it would be possible to use the relation to label the relationship between a near infinite number of structures - between the rings of saturn and my left earlobe. The intent is that this is used for parsiomoniously for disambiguation purposes - for example, between siblings in a jointly exhaustive pairwise disjointness hierarchy
IAO_0000424: BFO_0000051 exactly 0 (BFO_0000050 some ?Y)
RO_0001900: RO_0001901
in subset: ro-eco

has component
type: ObjectProperty
sub property of: has part
IAO_0000114: pending final vetting
IAO_0000115: w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.
IAO_0000116: The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity.
IAO_0000232: For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit.
RO_0001900: RO_0001901
in subset: ro-eco

regulates
type: ObjectProperty
sub property of: causally upstream of
inverse of: regulated by
type: TransitiveProperty
domain: process
range: process
property chain axiom: ends with
property chain axiom: directly regulates
IAO_0000114: pending final vetting
IAO_0000115: process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2.
IAO_0000116: We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit
IAO_0000117: Chris Mungall
IAO_0000117: David Hill
IAO_0000117: Tanya Berardini
IAO_0000119: causal-relations
IAO_0000119: GO
IAO_0000232: Regulation precludes parthood; the regulatory process may not be within the regulated process.
IAO_0000589: regulates (processual)
IAO_0000600: false

negatively regulates
type: ObjectProperty
sub property of: regulates
sub property of: causally upstream of, negative effect
inverse of: negatively regulated by
type: TransitiveProperty
property chain axiom: ends with
IAO_0000114: pending final vetting
IAO_0000115: Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2.
IAO_0000117: Chris Mungall
IAO_0000119: causal-relations
IAO_0000589: negatively regulates (process to process)
RO_0004050: regulates

positively regulates
type: ObjectProperty
sub property of: regulates
sub property of: causally upstream of, positive effect
inverse of: positively regulated by
type: TransitiveProperty
property chain axiom: negatively regulates
property chain axiom: ends with
IAO_0000115: Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2.
IAO_0000117: Chris Mungall
IAO_0000119: causal-relations
IAO_0000589: positively regulates (process to process)
RO_0004049: regulates

capable of
type: ObjectProperty
sub property of: capable of part of
domain: independent continuant
range: process
IAO_0000112: mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)
IAO_0000112: osteoclast SubClassOf 'capable of' some 'bone resorption'
IAO_0000114: pending final vetting
IAO_0000115: A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process.
IAO_0000117: Chris Mungall
IAO_0000118: has function realized in
IAO_0000119: http://www.ncbi.nlm.nih.gov/pubmed/20123131
IAO_0000119: http://www.ncbi.nlm.nih.gov/pubmed/21208450
IAO_0000232: For compatibility with BFO, this relation has a shortcut definition in which the expression "capable of some P" expands to "bearer_of (some realized_by only P)".
IAO_0000424: RO_0000053 some (RO_0000054 only ?Y)
in subset: ro-eco

capable of part of
type: ObjectProperty
sub property of: functionally related to
sub property of: causal agent in
property chain axiom: capable of
property chain axiom: part of
IAO_0000114: pending final vetting
IAO_0000115: c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p.
IAO_0000117: Chris Mungall
IAO_0000118: has function in
IAO_0000424: RO_0000053 some (RO_0000054 only (BFO_0000050 some ?Y))

Axiom
annotated source: capable of part of
annotated property: propertyChainAxiom
annotated target: capable of
annotated target: part of
RO_0002582: true

Axiom
annotated source: capable of part of
annotated property: propertyChainAxiom
annotated target: capable of
annotated target: part of
http://purl.obolibrary.org/obo/ro 0002582: true

actively participates in
type: ObjectProperty
sub property of: participates in
inverse of: obsolete has active participant
IAO_0000114: pending final vetting
IAO_0000115: x actively participates in y if and only if x participates in y and x realizes some active role
IAO_0000117: Chris Mungall
IAO_0000118: agent in

obsolete has active participant
type: ObjectProperty
sub property of: has participant
IAO_0000112: 'heart development' has active participant some Shh protein
IAO_0000114: pending final vetting
IAO_0000115: x has participant y if and only if x realizes some active role that inheres in y
IAO_0000116: This may be obsoleted and replaced by the original 'has agent' relation
IAO_0000117: Chris Mungall
IAO_0000118: has agent
in subset: ro-eco
label: has active participant
deprecated: true

surrounded by
type: ObjectProperty
sub property of: adjacent to
inverse of: surrounds
IAO_0000114: pending final vetting
IAO_0000115: x surrounded_by y if and only if (1) x is adjacent to y and for every region r that is adjacent to x, r overlaps y (2) the shared boundary between x and y occupies the majority of the outermost boundary of x
IAO_0000117: Chris Mungall
RO_0001900: RO_0001901

adjacent to
type: ObjectProperty
sub property of: spatially disjoint from
domain: independent continuant
range: independent continuant
IAO_0000112: A caterpillar walking on the surface of a leaf is adjacent_to the leaf, if one of the caterpillar appendages is touching the leaf. In contrast, a butterfly flying close to a flower is not considered adjacent, unless there are any touching parts.
IAO_0000112: The epidermis layer of a vertebrate is adjacent to the dermis.
IAO_0000112: The plasma membrane of a cell is adjacent to the cytoplasm, and also to the cell lumen which the cytoplasm occupies.
IAO_0000112: The skin of the forelimb is adjacent to the skin of the torso if these are considered anatomical subdivisions with a defined border. Otherwise a relation such as continuous_with would be used.
IAO_0000114: pending final vetting
IAO_0000115: x adjacent to y if and only if x and y share a boundary.
IAO_0000116: This relation acts as a join point with BSPO
IAO_0000117: Chris Mungall
RO_0001900: RO_0001901

Axiom
annotated source: adjacent to
annotated property: IAO_0000112
annotated target: A caterpillar walking on the surface of a leaf is adjacent_to the leaf, if one of the caterpillar appendages is touching the leaf. In contrast, a butterfly flying close to a flower is not considered adjacent, unless there are any touching parts.

surrounds
type: ObjectProperty
sub property of: adjacent to
IAO_0000114: pending final vetting
IAO_0000115: inverse of surrounded by
IAO_0000117: Chris Mungall
RO_0001900: RO_0001901
in subset: RO_0002259

temporally related to
type: ObjectProperty
domain: occurrent
range: occurrent
IAO_0000114: pending final vetting
IAO_0000117: Chris Mungall
IAO_0000119: Allen's interval algebra
IAO_0000232: Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends.
source: https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit
in subset: ro-eco
comment: A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations.

ends
type: ObjectProperty
sub property of: part of
sub property of: temporally related to
inverse of: ends with
IAO_0000114: pending final vetting
IAO_0000115: inverse of ends with
IAO_0000117: Chris Mungall
in subset: ro-eco

ends with
type: ObjectProperty
sub property of: has part
sub property of: temporally related to
type: TransitiveProperty
IAO_0000114: pending final vetting
IAO_0000115: x ends with y if and only if x has part y and the time point at which x ends is equivalent to the time point at which y ends. Formally: α(y) > α(x) ∧ ω(y) = ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
IAO_0000117: Chris Mungall
IAO_0000118: finished by
in subset: ro-eco

has end location
type: ObjectProperty
sub property of: has part that occurs in
domain: process
range: independent continuant
property chain axiom: ends with
property chain axiom: occurs in
IAO_0000114: pending final vetting
IAO_0000115: x 'has end location' y if and only if there exists some process z such that x 'ends with' z and z 'occurs in' y
IAO_0000117: Chris Mungall
IAO_0000118: ends with process that occurs in
in subset: ro-eco

has input
type: ObjectProperty
sub property of: has participant
inverse of: input of
domain: process
range: material entity
IAO_0000114: pending final vetting
IAO_0000115: p has direct input c iff c is a participant in p, c is present at the start of p, and the state of c is modified during p.
IAO_0000115: p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p.
IAO_0000117: Chris Mungall
IAO_0000118: consumes
IAO_0000412: ro.owl
in subset: ro-eco

has output
type: ObjectProperty
sub property of: has participant
inverse of: output of
property chain axiom: ends with
IAO_0000114: pending final vetting
IAO_0000115: p has output c iff c is a participant in p, c is present at the end of p, and c is not present at the beginning of p.
IAO_0000117: Chris Mungall
IAO_0000118: produces
IAO_0000412: ro.owl
in subset: ro-eco

acts upstream of
type: ObjectProperty
sub property of: acts upstream of or within
property chain axiom: enables
property chain axiom: causally upstream of
IAO_0000112: A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision.
IAO_0000115: c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes.
IAO_0000115: c involved in regulation of p if c enables 'p' and p' causally upstream of p

acts upstream of or within
type: ObjectProperty
sub property of: causal agent in
property chain axiom: enables
property chain axiom: causally upstream of or within
IAO_0000112: A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway.
IAO_0000115: c acts upstream of or within p if c is enables 'p' and p' causally upstream of or within p
IAO_0000115: c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process.
has related synonym: affects

results in developmental progression of
type: ObjectProperty
sub property of: developmentally related to
domain: biological_process
range: anatomical structure
IAO_0000114: pending final vetting
IAO_0000115: p results in the developmental progression of s iff p is a developmental process and s is an anatomical structure and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss).
IAO_0000116: This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint.
IAO_0000117: Chris Mungall
shorthand: results_in_developmental_progression_of

results in formation of
type: ObjectProperty
sub property of: has output
sub property of: results in developmental progression of
inverse of: formed as result of
IAO_0000112: an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists.
IAO_0000112: every "endocardial cushion formation" (GO:0003272) results_in_formation_of some "endocardial cushion" (UBERON:0002062)
IAO_0000114: pending final vetting
IAO_0000117: Chris Mungall
IAO_0000119: GOC:mtg_berkeley_2013
shorthand: results_in_formation_of

has habitat
type: ObjectProperty
sub property of: ecologically related to
IAO_0000112: Hydrozoa (NCBITaxon_6074) SubClassOf 'has habitat' some 'Hydrozoa habitat' where 'Hydrozoa habitat' SubClassOf overlaps some ('marine environment' (ENVO_00000569) and 'freshwater environment' (ENVO_01000306) and 'wetland' (ENVO_00000043)) and 'has part' some (freshwater (ENVO_00002011) or 'sea water' (ENVO_00002149)) -- http://eol.org/pages/1795/overview
IAO_0000114: requires discussion
IAO_0000115: x 'has habitat' y if and only if: x is an organism, y is a habitat, and y can sustain and allow the growth of a population of xs.
IAO_0000117: Pier Buttigieg
IAO_0000118: adapted for living in
in subset: ro-eco
comment: A population of xs will possess adaptations (either evolved naturally or via artifical selection) which permit it to exist and grow in y.

causally upstream of, positive effect
type: ObjectProperty
sub property of: causally upstream of
sub property of: causally upstream of or within, positive effect
RO_0004049: causally upstream of
creator: cjm
comment: holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y

causally upstream of, negative effect
type: ObjectProperty
sub property of: causally upstream of
sub property of: causally upstream of or within, negative effect
RO_0004050: causally upstream of
creator: cjm
comment: holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y

inheres in part of
type: ObjectProperty
sub property of: depends on
property chain axiom: inheres in
property chain axiom: part of
IAO_0000115: q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w.
IAO_0000116: Because part_of is transitive, inheres in is a sub-relation of inheres in part of
IAO_0000117: Chris Mungall
IAO_0000119: http://www.ncbi.nlm.nih.gov/pubmed/20064205
IAO_0000412: ro.owl
RO_0001900: RO_0001901

Axiom
annotated source: inheres in part of
annotated property: propertyChainAxiom
annotated target: inheres in
annotated target: part of
RO_0002582: true

evolutionarily related to
type: ObjectProperty
IAO_0000115: A relationship that holds via some environmental process

ecologically related to
type: ObjectProperty
IAO_0000115: A relationship that is mediated in some way by the environment or environmental feature (ENVO:00002297)
IAO_0000116: Awaiting class for domain/range constraint, see: https://github.com/OBOFoundry/Experimental-OBO-Core/issues/6
IAO_0000117: Chris Mungall
IAO_0000232: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving ecological interactions
in subset: ro-eco

mereotopologically related to
type: ObjectProperty
IAO_0000115: A mereological relationship or a topological relationship
IAO_0000117: Chris Mungall
IAO_0000232: Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships
IAO_0000412: ro.owl
RO_0001900: RO_0001901

developmentally related to
type: ObjectProperty
IAO_0000115: A relationship that holds between entities participating in some developmental process (GO:0032502)
IAO_0000117: Chris Mungall
IAO_0000232: Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development

contributes to
type: ObjectProperty
sub property of: capable of part of
sub property of: part of structure that is capable of
IAO_0000112: ATP citrate lyase (ACL) in Arabidopsis: it is a heterooctamer, composed of two types of subunits, ACLA and ACLB in a A(4)B(4) stoichiometry. Neither of the subunits expressed alone give ACL activity, but co-expression results in ACL activity. Both subunits contribute_to the ATP citrate lyase activity.
IAO_0000112: Subunits of nuclear RNA polymerases: none of the individual subunits have RNA polymerase activity, yet all of these subunits contribute_to DNA-dependent RNA polymerase activity.
IAO_0000112: eIF2: has three subunits (alpha, beta, gamma); one binds GTP; one binds RNA; the whole complex binds the ribosome (all three subunits are required for ribosome binding). So one subunit is annotated to GTP binding and one to RNA binding without qualifiers, and all three stand in the contributes_to relationship to "ribosome binding". And all three are part_of an eIF2 complex
IAO_0000116: We would like to say if and only if exists c', p' c part_of c' and c' capable_of p and c capable_of p' and p' part_of p then c contributes_to p However, this is not possible in OWL. We instead make this relation a sub-relation of the two chains, which gives us the inference in the one direction.
IAO_0000117: Chris Mungall
IAO_0000119: http://www.geneontology.org/GO.annotation.conventions.shtml#contributes_to
IAO_0000232: In the context of the Gene Ontology, contributes_to may be used only with classes from the molecular function ontology.

enables
type: ObjectProperty
sub property of: capable of
inverse of: enabled by
property chain axiom: has part
property chain axiom: has component activity
IAO_0000112: a particular instances of akt-2 enables some instance of protein kinase activity
IAO_0000117: Chris Mungall
IAO_0000118: catalyzes
IAO_0000118: executes
IAO_0000118: has
IAO_0000118: is catalyzing
IAO_0000118: is executing
IAO_0000232: This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized.
IAO_0000232: This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time.

functionally related to
type: ObjectProperty
IAO_0000115: A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities.
IAO_0000117: Chris Mungall
IAO_0000232: This is a grouping relation that collects relations used for the purpose of connecting structure and function
IAO_0000412: ro.owl

part of structure that is capable of
type: ObjectProperty
sub property of: functionally related to
property chain axiom: part of
property chain axiom: capable of
IAO_0000115: this relation holds between c and p when c is part of some c', and c' is capable of p.
IAO_0000117: Chris Mungall
IAO_0000118: false

Axiom
annotated source: part of structure that is capable of
annotated property: propertyChainAxiom
annotated target: part of
annotated target: capable of
is a defining property chain axiom: true

Axiom
annotated source: part of structure that is capable of
annotated property: propertyChainAxiom
annotated target: part of
annotated target: capable of
http://purl.obolibrary.org/obo/ro 0002581: true

involved in
type: ObjectProperty
sub property of: participates in
sub property of: actively participates in
sub property of: involved in or involved in regulation of
property chain axiom: enables
property chain axiom: part of
IAO_0000115: c involved_in p if and only if c enables some process p', and p' is part of p
IAO_0000117: Chris Mungall
IAO_0000118: actively involved in
IAO_0000118: enables part of

enabled by
type: ObjectProperty
sub property of: has participant
sub property of: functionally related to
sub property of:
  inverse of: capable of
IAO_0000115: inverse of enables
IAO_0000117: Chris Mungall

regulated by
type: ObjectProperty
sub property of: causally downstream of or within
type: TransitiveProperty
domain: process
range: process
IAO_0000115: inverse of regulates
IAO_0000117: Chris Mungall
IAO_0000589: regulated by (processual)
in subset: RO_0002259

negatively regulated by
type: ObjectProperty
sub property of: regulated by
IAO_0000115: inverse of negatively regulates
IAO_0000117: Chris Mungall
in subset: RO_0002259

positively regulated by
type: ObjectProperty
sub property of: regulated by
IAO_0000115: inverse of positively regulates
IAO_0000117: Chris Mungall
in subset: RO_0002259

member of
type: ObjectProperty
equivalent property:
  inverse of: has member
sub property of: part of
inverse of: has member
IAO_0000112: An organism that is a member of a population of organisms
IAO_0000115: is member of is a mereological relation between a item and a collection.
IAO_0000118: is member of
IAO_0000118: member part of
IAO_0000119: SIO
IAO_0000412: ro.owl
RO_0001900: RO_0001901

has member
type: ObjectProperty
equivalent property:
  inverse of: member of
sub property of: has part
type: IrreflexiveProperty
IAO_0000115: has member is a mereological relation between a collection and an item.
IAO_0000119: SIO
IAO_0000412: ro.owl
RO_0001900: RO_0001901

input of
type: ObjectProperty
sub property of: participates in
sub property of: functionally related to
IAO_0000115: inverse of has input
IAO_0000117: Chris Mungall
IAO_0000412: ro.owl
in subset: RO_0002259
in subset: ro-eco

output of
type: ObjectProperty
sub property of: participates in
sub property of: functionally related to
IAO_0000115: inverse of has output
IAO_0000117: Chris Mungall
IAO_0000412: ro.owl
in subset: RO_0002259
in subset: ro-eco

formed as result of
type: ObjectProperty
sub property of: output of
IAO_0000117: Chris Mungall

spatially coextensive with
type: ObjectProperty
sub property of: overlaps
property chain axiom: located in
property chain axiom:
  inverse of: located in
IAO_0000112: A lump of clay and a statue
IAO_0000115: x spatially_coextensive_with y if and inly if x and y have the same location
IAO_0000117: Chris Mungall
IAO_0000232: This relation is added for formal completeness. It is unlikely to be used in many practical scenarios

causally downstream of
type: ObjectProperty
sub property of: preceded by
sub property of: causally downstream of or within
inverse of: causally upstream of
IAO_0000114: requires discussion
IAO_0000115: inverse of upstream of
IAO_0000117: Chris Mungall

immediately causally downstream of
type: ObjectProperty
sub property of: immediately preceded by
sub property of: causally downstream of
inverse of: immediately causally upstream of
IAO_0000114: requires discussion
IAO_0000117: Chris Mungall

causally related to
type: ObjectProperty
sub property of: related via dependence to
IAO_0000114: requires discussion
IAO_0000115: This relation groups causal relations between material entities and causal relations between processes
IAO_0000116: This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents. To define causal relations in an activity-flow type network, we make use of 3 primitives: * Temporal: how do the intervals of the two occurrents relate? * Is the causal relation regulatory? * Is the influence positive or negative The first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified. For the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule. For the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral. Each of these 3 primitives can be composed to yiel…
IAO_0000117: Chris Mungall
IAO_0000232: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.

causally upstream of
type: ObjectProperty
sub property of: precedes
sub property of: causally upstream of or within
type: TransitiveProperty
IAO_0000114: requires discussion
IAO_0000115: p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain
IAO_0000117: Chris Mungall

immediately causally upstream of
type: ObjectProperty
sub property of: immediately precedes
sub property of: causally upstream of
IAO_0000114: requires discussion
IAO_0000115: p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q.
IAO_0000117: Chris Mungall
RO_0002575: causally upstream of

causally upstream of or within
type: ObjectProperty
sub property of: causal relation between processes
inverse of: causally downstream of or within
type: TransitiveProperty
IAO_0000115: p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q.
IAO_0000116: We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2
IAO_0000117: Chris Mungall
IAO_0000118: influences (processual)
has related synonym: affects

causally downstream of or within
type: ObjectProperty
sub property of: causal relation between processes
type: TransitiveProperty
IAO_0000115: inverse of causally upstream of or within
IAO_0000117: Chris Mungall
IAO_0000119: causal-relations
in subset: RO_0002259

involved in regulation of
type: ObjectProperty
sub property of: acts upstream of
sub property of: involved in or involved in regulation of
property chain axiom: enables
property chain axiom: regulates
property chain axiom: involved in
IAO_0000115: c involved in regulation of p if c is involved in some 'p' and p' regulates some p
IAO_0000115: c involved in regulation of p if c is involved in some p' and p' regulates some p
IAO_0000117: Chris Mungall

involved in positive regulation of
type: ObjectProperty
sub property of: involved in regulation of
property chain axiom: enables
property chain axiom: positively regulates
property chain axiom: involved in
IAO_0000115: c involved in regulation of p if c is involved in some p' and p' positively regulates some p
IAO_0000117: Chris Mungall
RO_0004049: involved in regulation of

involved in negative regulation of
type: ObjectProperty
sub property of: involved in regulation of
property chain axiom: enables
property chain axiom: negatively regulates
property chain axiom: involved in
IAO_0000115: c involved in regulation of p if c is involved in some p' and p' negatively regulates some p
IAO_0000117: Chris Mungall
RO_0004050: involved in regulation of

involved in or involved in regulation of
type: ObjectProperty
sub property of: acts upstream of or within
sub property of: functionally related to
sub property of: causal agent in
IAO_0000115: c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p
IAO_0000116: OWL does not allow defining object properties via a Union
IAO_0000117: Chris Mungall
IAO_0000118: involved in or reguates

enables activity in
type: ObjectProperty
sub property of: overlaps
sub property of: functionally related to
property chain axiom: enables
property chain axiom: occurs in
IAO_0000112: A protein that enables activity in a cytosol.
IAO_0000115: c executes activity in d if and only if c enables p and p occurs_in d
IAO_0000115: c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.
IAO_0000117: Chris Mungall
IAO_0000118: executes activity in
has exact synonym: enables activity in
label: is active in

Axiom
annotated source: enables activity in
annotated property: propertyChainAxiom
annotated target: enables
annotated target: occurs in
is a defining property chain axiom: true

Axiom
annotated source: enables activity in
annotated property: propertyChainAxiom
annotated target: enables
annotated target: occurs in
http://purl.obolibrary.org/obo/ro 0002581: true

Axiom
annotated source: enables activity in
annotated property: IAO_0000115
annotated target: c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.
has db xref: GOC:cjm
has db xref: GOC:dos

interacts with
type: ObjectProperty
type: SymmetricProperty
domain: material entity
range: material entity
IAO_0000115: A relationship that holds between two entities in which the processes executed by the two entities are causally connected.
IAO_0000116: Considering relabeling as 'pairwise interacts with'
IAO_0000116: This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact.
IAO_0000117: Chris Mungall
IAO_0000232: Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules.
has exact synonym: in pairwise interaction with
in subset: ro-eco

molecularly interacts with
type: ObjectProperty
sub property of: interacts with
type: SymmetricProperty
IAO_0000115: An interaction relationship in which the two partners are molecular entities and are executing molecular processes that are directly causally connected.
IAO_0000115: An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other.
IAO_0000117: Chris Mungall
IAO_0000118: binds
IAO_0000118: molecularly binds with

phosphorylates
type: ObjectProperty
sub property of: molecularly interacts with
IAO_0000116: Axiomatization to GO to be added later
IAO_0000117: Chris Mungall
IAO_0000118: An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y.

activity directly regulates activity of
type: ObjectProperty
sub property of: molecularly interacts with
sub property of: causally influences
sub property of: regulates activity of
domain: material entity
range: material entity
property chain axiom: enables
property chain axiom: regulates
property chain axiom: enabled by
IAO_0000115: Holds between molecular entities A and B where A can physically interact with B and in doing so regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B.
IAO_0000115: Holds between molecular entities a and b when the execution of a activates or inhibits the activity of b
IAO_0000115: The entity A, immediately upstream of the entity B, has an activity that regulates an activity performed by B. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B. A and B can be physically interacting but not necessarily. Immediately upstream means there are no intermediate entity between A and B.
IAO_0000117: Chris Mungall
IAO_0000117: Vasundra Touré
has exact synonym: molecularly controls
label: directly regulates activity of
label: molecularly controls

activity directly negatively regulates activity of
type: ObjectProperty
sub property of: activity directly regulates activity of
domain: material entity
range: material entity
property chain axiom: enables
property chain axiom: directly negatively regulates
property chain axiom: enabled by
IAO_0000115: Holds between molecular entities A and B where A can physically interact with B and in doing so negatively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.
IAO_0000115: The entity A, immediately upstream of the entity B, has an activity that negatively regulates an activity performed by B. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.
IAO_0000117: Chris Mungall
IAO_0000117: Vasundra Touré
IAO_0000118: directly inhibits
has exact synonym: molecularly decreases activity of
label: directly negatively regulates activity of

activity directly positively regulates activity of
type: ObjectProperty
sub property of: activity directly regulates activity of
domain: material entity
range: material entity
property chain axiom: enables
property chain axiom: directly positively regulates
property chain axiom: enabled by
IAO_0000115: Holds between molecular entities A and B where A can physically interact with B and in doing so positively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.
IAO_0000115: The entity A, immediately upstream of the entity B, has an activity that positively regulates an activity performed by B. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.
IAO_0000117: Chris Mungall
IAO_0000117: Vasundra Touré
IAO_0000118: directly activates
has exact synonym: molecularly increases activity of
label: directly positively regulates activity of

helper property (not for use in curation)
type: ObjectProperty
IAO_0000117: Chris Mungall
IAO_0000232: This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning.

composed primarily of
type: ObjectProperty
sub property of: has part
IAO_0000112: 'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'
IAO_0000115: x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y.
IAO_0000117: Chris Mungall
IAO_0000119: http://www.ncbi.nlm.nih.gov/pubmed/22293552
RO_0001900: RO_0001901
in subset: ro-eco

has part that occurs in
type: ObjectProperty
domain: occurrent
range: independent continuant
property chain axiom: has part
property chain axiom: occurs in
IAO_0000115: p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c.
IAO_0000117: Chris Mungall
in subset: ro-eco

Axiom
annotated source: has part that occurs in
annotated property: propertyChainAxiom
annotated target: has part
annotated target: occurs in
is a defining property chain axiom: true

Axiom
annotated source: has part that occurs in
annotated property: propertyChainAxiom
annotated target: has part
annotated target: occurs in
http://purl.obolibrary.org/obo/ro 0002581: true

is kinase activity
type: ObjectProperty
sub property of: molecular interaction relation helper property
IAO_0000117: Chris Mungall

causal agent in
type: ObjectProperty
sub property of: causal relation between material entity and a process
inverse of: has causal agent
IAO_0000115: A relationship between a material entity and a process where the material entity has some causal role that influences the process
IAO_0000119: causal-relations
label: causal agent in process

causal relation between processes
type: ObjectProperty
sub property of: causally related to
domain: occurrent
range: occurrent
IAO_0000115: p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q.
IAO_0000117: Chris Mungall
IAO_0000119: causal-relations
IAO_0000232: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.

depends on
type: ObjectProperty
IAO_0000117: Chris Mungall
IAO_0000412: ro.owl

causal relation between entities
type: ObjectProperty
sub property of: causally related to
domain: continuant
domain: material entity
range: continuant
range: material entity
IAO_0000116: The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch
IAO_0000117: Chris Mungall
IAO_0000119: causal-relations
IAO_0000232: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
label: causal relation between material entities

determined by
type: ObjectProperty
sub property of: part of
sub property of: determined by part of
sub property of: causally influenced by
inverse of: determines
domain: system
range: material entity
IAO_0000112: A coral reef environment is determined by a particular coral reef
IAO_0000115: s determined by f if and only if s is a type of system, and f is a material entity that is part of s, such that f exerts a strong causal influence on the functioning of s, and the removal of f would cause the collapse of s.
IAO_0000116: The label for this relation is probably too general for its restricted use, where the domain is a system. It may be relabeled in future
IAO_0000117: Chris Mungall
IAO_0000119: http://www.ncbi.nlm.nih.gov/pubmed/24330602
IAO_0000589: determined by (system to material entity)
creator: Chris Mungall
creator: Pier Buttigieg
in subset: ro-eco

determines
type: ObjectProperty
sub property of: causally influences
IAO_0000115: inverse of determined by
IAO_0000117: Chris Mungall
IAO_0000589: determines (material entity to system)
in subset: RO_0002259
in subset: ro-eco

determined by part of
type: ObjectProperty
sub property of: overlaps
sub property of: causal relation between entities
domain: system
range: material entity
property chain axiom: determined by
property chain axiom: part of
IAO_0000115: s 'determined by part of' w if and only if there exists some f such that (1) s 'determined by' f and (2) f part_of w, or f=w.
IAO_0000117: Chris Mungall
in subset: ro-eco

Axiom
annotated source: determined by part of
annotated property: propertyChainAxiom
annotated target: determined by
annotated target: part of
RO_0002582: true

causally influenced by
type: ObjectProperty
sub property of: causal relation between entities
inverse of: causally influences
IAO_0000117: Chris Mungall
IAO_0000119: causal-relations
IAO_0000589: causally influenced by (entity-centric)
IAO_0000589: causally influenced by (material entity to material entity)

interaction relation helper property
type: ObjectProperty
sub property of: helper property (not for use in curation)
IAO_0000117: Chris Mungall

molecular interaction relation helper property
type: ObjectProperty
sub property of: interaction relation helper property
IAO_0000117: Chris Mungall

causally influences
type: ObjectProperty
sub property of: causal relation between entities
domain: continuant
range: continuant
property chain axiom: enables
property chain axiom: causally upstream of
property chain axiom: has input
property chain axiom: enabled by
IAO_0000115: Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b
IAO_0000115: The entity or characteristic A is causally upstream of the entity or characteristic B, A having an effect on B. An entity corresponds to any biological type of entity as long as a mass is measurable. A characteristic corresponds to a particular specificity of an entity (e.g., phenotype, shape, size).
IAO_0000117: Chris Mungall
IAO_0000117: Vasundra Touré
IAO_0000119: causal-relations
IAO_0000589: causally influences (entity-centric)
IAO_0000589: causally influences (material entity to material entity)

directly regulates
type: ObjectProperty
sub property of: regulates
sub property of: immediately causally upstream of
IAO_0000115: Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.
IAO_0000117: Chris Mungall
IAO_0000119: causal-relations
IAO_0000589: directly regulates (processual)
RO_0002575: regulates

has part structure that is capable of
type: ObjectProperty
sub property of: functionally related to
sub property of: causal relation between material entity and a process
property chain axiom: has part
property chain axiom: capable of
IAO_0000112: gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'
IAO_0000115: s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p
IAO_0000117: Chris Mungall

causal relation between material entity and a process
type: ObjectProperty
sub property of: causally related to
domain: material entity
range: process
IAO_0000115: A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity.
IAO_0000116: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
IAO_0000117: Chris Mungall
IAO_0000119: causal-relations

capable of regulating
type: ObjectProperty
sub property of: causal agent in
property chain axiom: capable of
property chain axiom: regulates
IAO_0000112: pyrethroid -> growth
IAO_0000115: Holds between c and p if and only if c is capable of some activity a, and a regulates p.
IAO_0000119: causal-relations

capable of negatively regulating
type: ObjectProperty
sub property of: capable of regulating
property chain axiom: capable of
property chain axiom: negatively regulates
IAO_0000115: Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.
IAO_0000119: causal-relations

capable of positively regulating
type: ObjectProperty
sub property of: capable of regulating
property chain axiom: capable of
property chain axiom: positively regulates
IAO_0000112: renin -> arteriolar smooth muscle contraction
IAO_0000115: Holds between c and p if and only if c is capable of some activity a, and a positively regulates p.
IAO_0000119: causal-relations

has causal agent
type: ObjectProperty
sub property of: causally related to
IAO_0000115: Inverse of 'causal agent in process'
IAO_0000115: Inverse of 'causal agent in'
IAO_0000119: causal-relations
label: process has causal agent

related via dependence to
type: ObjectProperty
IAO_0000115: A relationship that holds between two entities, where the relationship holds based on the presence or absence of statistical dependence relationship. The entities may be statistical variables, or they may be other kinds of entities such as diseases, chemical entities or processes.
IAO_0000232: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.

directly positively regulates
type: ObjectProperty
sub property of: positively regulates
sub property of: directly regulates
IAO_0000115: Process(P1) directly postively regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2.
IAO_0000119: causal-relations
IAO_0000589: directly positively regulates (process to process)
RO_0004049: directly regulates

directly negatively regulates
type: ObjectProperty
sub property of: negatively regulates
sub property of: directly regulates
IAO_0000115: Process(P1) directly negatively regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2.
IAO_0000119: causal-relations
IAO_0000589: directly negatively regulates (process to process)
RO_0004050: directly regulates

produces
type: ObjectProperty
inverse of: produced by
domain: material entity
range: material entity
property chain axiom:
  inverse of: occurs in
property chain axiom: has output
IAO_0000114: pending final vetting
IAO_0000115: a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix.
IAO_0000117: Melissa Haendel
in subset: ro-eco
comment: Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue.

produced by
type: ObjectProperty
domain: material entity
range: material entity
IAO_0000114: pending final vetting
IAO_0000115: a produced_by b iff some process that occurs_in b has_output a.
IAO_0000117: Melissa Haendel
in subset: ro-eco

enables subfunction
type: ObjectProperty
sub property of: functionally related to
property chain axiom: enables
property chain axiom: has part
IAO_0000115: Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P.
created by: cjm
creation date: 2018-01-25T23:20:13Z

acts upstream of or within, positive effect
type: ObjectProperty
sub property of: acts upstream of or within
property chain axiom: enables
property chain axiom: causally upstream of or within, positive effect
RO_0004049: acts upstream of or within
created by: cjm
creation date: 2018-01-26T23:49:30Z

acts upstream of or within, negative effect
type: ObjectProperty
sub property of: acts upstream of or within
property chain axiom: enables
property chain axiom: causally upstream of or within, negative effect
RO_0004050: acts upstream of or within
created by: cjm
creation date: 2018-01-26T23:49:51Z

acts upstream of, positive effect
type: ObjectProperty
sub property of: acts upstream of
sub property of: acts upstream of or within, positive effect
property chain axiom: enables
property chain axiom: causally upstream of, positive effect
IAO_0000115: c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive
RO_0004049: acts upstream of
created by: cjm
creation date: 2018-01-26T23:53:14Z

acts upstream of, negative effect
type: ObjectProperty
sub property of: acts upstream of
sub property of: acts upstream of or within, negative effect
property chain axiom: enables
property chain axiom: causally upstream of, negative effect
IAO_0000115: c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative
RO_0004050: acts upstream of
created by: cjm
creation date: 2018-01-26T23:53:22Z

causally upstream of or within, negative effect
type: ObjectProperty
sub property of: causally upstream of or within
RO_0004050: causally upstream of or within
created by: cjm
creation date: 2018-03-13T23:55:05Z

causally upstream of or within, positive effect
type: ObjectProperty
sub property of: causally upstream of or within
RO_0004049: causally upstream of or within
created by: cjm
creation date: 2018-03-13T23:55:19Z

regulates activity of
type: ObjectProperty
sub property of: causally influences
domain: material entity
range: material entity
IAO_0000115: The entity A has an activity that regulates an activity of the entity B. For example, A and B are gene products where the catalytic activity of A regulates the kinase activity of B.
IAO_0000117: Vasundra Touré

has start date
type: DatatypeProperty

has end date
type: DatatypeProperty

irrigation process
type: Class
subclass of: agricultural process
subclass of: hydrological process
subclass of: Restriction
  on property: BFO_0000055
  some values from: Restriction
    on property: concretizes
    some values from: irrigation method
subclass of: Restriction
  on property: has participant
  some values from: irrigation equipment
subclass of: Restriction
  on property: has participant
  some values from: liquid water
subclass of: Restriction
  on property: has participant
  some values from: Class
    union of: tractor
    union of: Class
      intersection of: organism
      intersection of: Restriction
        on property: has role
        some values from: Class
IAO_0000115: A planned process in which water is artificially supplied to plant or soil to sustain plants.
has exact synonym: irrigation

Axiom
annotated source: irrigation process
annotated property: IAO_0000115
annotated target: A planned process in which water is artificially supplied to plant or soil to sustain plants.
has db xref: https://en.wikipedia.org/wiki/Irrigation
has db xref: www.dictionary.com/browse/irrigation

irrigation water source role
type: Class
subclass of: role
subclass of: Restriction
  on property: inheres in
  some values from: water body
subclass of: Restriction
  on property: BFO_0000054
  all values from: irrigation process
IAO_0000115: A role that inheres in a water body that is realised in an irrigation process where water is transported from that water body to the target of the irrigation process.

irrigation source
type: Class
equivalent class: Class
  intersection of: material entity
  intersection of: Restriction
    on property: has role
    some values from: irrigation water source role
subclass of: water body
subclass of: Restriction
  on property: has role
  some values from: irrigation water source role
IAO_0000115: A water body from which water is taken during an irrigation process and transported to the target of the irrigation process.

plant reproductive material
type: Class
subclass of: plant anatomical entity
IAO_0000115: A plant anatomical entity that is defined to mean plants or parts of plant capable of and intended for producing or reproducing entire plants.

Axiom
annotated source: plant reproductive material
annotated property: IAO_0000115
annotated target: A plant anatomical entity that is defined to mean plants or parts of plant capable of and intended for producing or reproducing entire plants.
has db xref: http://ec.europa.eu/dgs/health_food-safety/pressroom/docs/proposal_aphp_en.pdf

irrigation method
type: Class
subclass of: plan specification
subclass of: Restriction
  on property: is concretized as
  some values from: Restriction
    on property: BFO_0000054
    some values from: irrigation process
IAO_0000115: A plan specification which describes how water is applied to plants or soil.

draft animal
type: Class
equivalent class: Class
  intersection of: organism
  intersection of: Restriction
    on property: has role
    some values from: draft animal role
subclass of: organism
subclass of: Restriction
  on property: has role
  some values from: draft animal role
IAO_0000115: Organism used to pull agricultural implements.
has exact synonym: draught animal
has exact synonym: working animal

tractor
type: Class
subclass of: agricultural implement
IAO_0000115: A mobile machine specifically designed to deliver a high tractive effort at slow speeds, and mainly used for the purposes of hauling a trailer or machinery used in agriculture or construction.

Axiom
annotated source: tractor
annotated property: IAO_0000115
annotated target: A mobile machine specifically designed to deliver a high tractive effort at slow speeds, and mainly used for the purposes of hauling a trailer or machinery used in agriculture or construction.
has db xref: https://en.wikipedia.org/wiki/Tractor

crop residue
type: Class
equivalent class: Restriction
  on property: derives from
  some values from: plant structure
subclass of: plant anatomical entity
subclass of: Restriction
  on property: derives from
  some values from: plant structure
IAO_0000232: Plant material remaining on the field ground after harvesting, including leaves, stalks, roots.

Axiom
annotated source: crop residue
annotated property: IAO_0000232
annotated target: Plant material remaining on the field ground after harvesting, including leaves, stalks, roots.
has db xref: https://stats.oecd.org/glossary/detail.asp

row
type: Class
subclass of: environmental zone
subclass of: Restriction
  on property: part of
  some values from: agricultural field
IAO_0000115: two or more crop plants planted in a line.

interrow
type: Class
equivalent class: Restriction
  on property: related via dependence to
  some values from: row
subclass of: environmental zone
subclass of: Restriction
  on property: part of
  some values from: agricultural field
subclass of: Restriction
  on property: related via dependence to
  some values from: row
IAO_0000115: A site which is located between two rows of crop plants.

irrigation equipment
type: Class
equivalent class: Class
  intersection of: agricultural implement
  intersection of: Restriction
    on property: participates in
    some values from: irrigation process
subclass of: agricultural implement
subclass of: Restriction
  on property: participates in
  some values from: irrigation process
IAO_0000115: An equipment that is used during an irrigation process.

agricultural experimental plot
type: Class
subclass of: environmental zone
subclass of: Restriction
  on property: contains process
  some values from: agricultural experiment
IAO_0000115: A site within which an agricultural experimental process is conducted
IAO_0000116: This should be harmonized with statistical plot designs, perhaps with STATO
has exact synonym: plot

Axiom
annotated source: agricultural experimental plot
annotated property: IAO_0000115
annotated target: A site within which an agricultural experimental process is conducted
has db xref: http://www.fao.org/wairdocs/ilri/x5546e/x5546e0a.htm

plot spacing
type: Class
equivalent class: Class
  intersection of: distance
  intersection of: Restriction
    on property: inheres in
    some values from: agricultural experimental plot
subclass of: distance
subclass of: Restriction
  on property: inheres in
  some values from: agricultural experimental plot
IAO_0000115: Distance quality that represents the distance between two plots.

distance between plants
type: Class
equivalent class: Class
  intersection of: distance
  intersection of: Restriction
    on property: inheres in
    some values from: row
equivalent class: Class
  intersection of: distance
  intersection of: Restriction
    on property: inheres in
    some values from: whole plant
subclass of: distance
subclass of: Restriction
  on property: inheres in
  some values from: row
subclass of: Restriction
  on property: inheres in
  some values from: whole plant
IAO_0000115: Distance between two rows.
IAO_0000115: The distance of a whole plant
has exact synonym: distance between rows
has exact synonym: interrow
has exact synonym: row spacing
has exact synonym: space between rows

distance between rows
type: Class
equivalent class: Class
  intersection of: distance
  intersection of: Restriction
    on property: inheres in
    some values from: row
subclass of: distance
subclass of: Restriction
  on property: inheres in
  some values from: row
subclass of: Restriction
  on property: inheres in
  some values from: whole plant
IAO_0000115: Average distance between plants in a same row.
IAO_0000115: The distance of a row
has exact synonym: space between plants in row

treatment
type: Class
equivalent class: Restriction
  on property: related via dependence to
  some values from: experimental factor
subclass of: agricultural process
subclass of: Restriction
  on property: part of
  some values from: plant exposure
subclass of: Restriction
  on property: related via dependence to
  some values from: experimental factor
IAO_0000115: A process during which some material is applied to a subject

Axiom
annotated source: treatment
annotated property: IAO_0000115
annotated target: A process during which some material is applied to a subject
has db xref: http://www.fao.org/wairdocs/ilri/x5546e/x5546e0a.htm

crop
type: Class
equivalent class: Class
  intersection of: organism
  intersection of: Restriction
    on property: participates in
    some values from: agricultural experiment
subclass of: organism
subclass of: Restriction
  on property: participates in
  some values from: agricultural experiment
IAO_0000115: A crop is any cultivated plant, fungus, or alga that is harvested for food, clothing, livestock,fodder, biofuel, medicine, or other uses

Axiom
annotated source: crop
annotated property: IAO_0000115
annotated target: A crop is any cultivated plant, fungus, or alga that is harvested for food, clothing, livestock,fodder, biofuel, medicine, or other uses
has db xref: https://en.wikipedia.org/wiki/Crop

higher-level landform
type: Class
subclass of: solid astronomical body part
IAO_0000115: The landform refers to the shape of the land surface in the area in which the agronomic trial site is located.

Axiom
annotated source: higher-level landform
annotated property: IAO_0000115
annotated target: The landform refers to the shape of the land surface in the area in which the agronomic trial site is located.
has db xref: http://www.fao.org/docrep/019/a0541e/a0541e.pdf

agronomic land element
type: Class
subclass of: solid astronomical body part
IAO_0000115: Description of the geomorphology of the immediate surroundings of the experimental site.

Axiom
annotated source: agronomic land element
annotated property: IAO_0000115
annotated target: Description of the geomorphology of the immediate surroundings of the experimental site.
has db xref: http://www.fao.org/docrep/019/a0541e/a0541e.pdf

experimental factor
type: Class
subclass of: experimental condition
IAO_0000115: A factor of an experiment is a controlled independent variable; a variable whose levels are set by the experimenter. A factor is a general type or category of treatments. Different treatments constitute different levels of a factor.

Axiom
annotated source: experimental factor
annotated property: IAO_0000115
annotated target: A factor of an experiment is a controlled independent variable; a variable whose levels are set by the experimenter. A factor is a general type or category of treatments. Different treatments constitute different levels of a factor.
has db xref: http://www.stat.yale.edu/Courses/1997-98/101/expdes.htm

agronomic experimental design
type: Class
subclass of: study design
IAO_0000115: A plan specification that states how treatments are allocated to the experimental units during an agronomic trial. It refers to the conceptual framework within which the experiment is conducted.

Axiom
annotated source: agronomic experimental design
annotated property: IAO_0000115
annotated target: A plan specification that states how treatments are allocated to the experimental units during an agronomic trial. It refers to the conceptual framework within which the experiment is conducted.
has db xref: http://www.simplypsychology.org/experimental-designs.html
has db xref: https://en.wikipedia.org/wiki/Design_of_experiments
has db xref: https://www.okstate.edu/ag/agedcm4h/academic/aged5980a/5980/newpage2.htm

slope shape
type: Class
equivalent class: Class
  intersection of: shape
  intersection of: Restriction
    on property: inheres in
    some values from: slope
subclass of: shape
subclass of: Restriction
  on property: inheres in
  some values from: slope
IAO_0000115: Shape quality that refers to the general shape of a slope in both vertical and horizontal directions.
has exact synonym: slope form

Axiom
annotated source: slope shape
annotated property: IAO_0000115
annotated target: Shape quality that refers to the general shape of a slope in both vertical and horizontal directions.
has db xref: FAO, 1990

experiment
type: Class
subclass of: planned process
IAO_0000115: A planned process in which a procedure is carried out to support, refute, or validate a hypothesis.
IAO_0000116: This class is relevant to more than the agronomy domain. It should be replaced by a class in a more general ontology of experiments
has exact synonym: trial

Axiom
annotated source: experiment
annotated property: IAO_0000115
annotated target: A planned process in which a procedure is carried out to support, refute, or validate a hypothesis.
has db xref: https://en.wikipedia.org/wiki/Experiment

agricultural experiment
type: Class
subclass of: experiment
subclass of: agricultural process
subclass of: study design execution
subclass of: Restriction
  on property: has part
  some values from: treatment
subclass of: Restriction
  on property: BFO_0000055
  some values from: Restriction
    on property: concretizes
    some values from: agronomic experimental design
IAO_0000115: An experiment in which a scientific method is implemented for testing certain agricultural phenomena.
has related synonym: agronomic experiment

agricultural implement
type: Class
subclass of: object

mono-cropping experiment
type: Class
equivalent class: Restriction
  on property: has participant
  qualified cardinality: 1
  on class: crop
subclass of: agricultural experiment
subclass of: Restriction
  on property: has participant
  some values from: crop
IAO_0000115: An agricultural experiment involving the prolonged growing of a single crop.
has exact synonym: continuous crop experiment
has exact synonym: continuous mono-cropping experiment
has exact synonym: monoculture experiment

Axiom
annotated source: mono-cropping experiment
annotated property: label
annotated target: mono-cropping experiment
source: Richard Ostler

draft animal role
type: Class
subclass of: role
IAO_0000115: A role that inheres in an animal that is kept by humans and trained to perform tasks.
creator: http://orcid.org/0000-0002-8461-9745
has exact synonym: draft animal
has exact synonym: draught animal
has exact synonym: working animal

human power role
type: Class
subclass of: role
subclass of: Restriction
  on property: role of
  some values from: Homo sapiens
IAO_0000115: A role that inheres in a human to power an implement.
creator: http://orcid.org/0000-0002-8461-9745

agricultural process
type: Class
equivalent class: Restriction
  on property: occurs in
  some values from: agricultural experimental plot
subclass of: planned process
subclass of: Restriction
  on property: occurs in
  some values from: agricultural experimental plot
IAO_0000115: A planned process which occurs during an agricultural experiment.
creator: http://orcid.org/0000-0002-8461-9745

inter-cropping experiment
type: Class
equivalent class: Restriction
  on property: has participant
  min qualified cardinality: 2
  on class: Class
    intersection of: organism
    intersection of: Restriction
      on property: has role
      some values from: crop
subclass of: agricultural experiment
subclass of: Restriction
  on property: has participant
  some values from: Class
    intersection of: organism
    intersection of: Restriction
      on property: has role
      some values from: crop
IAO_0000115: An agricultural experiment during which at least two different crops are grown at the same time.
creator: http://orcid.org/0000-0002-8461-9745

entity
type: Class
BFO_0000179: entity
BFO_0000180: Entity
IAO_0000112: Julius Caesar
IAO_0000112: Verdi’s Requiem
IAO_0000112: the Second World War
IAO_0000112: your body mass index
IAO_0000116: BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81
IAO_0000116: Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf
IAO_0000412: obi.owl
IAO_0000600: An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])

Axiom
annotated source: entity
annotated property: IAO_0000116
annotated target: Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/0000004
comment: per discussion with Barry Smith

Axiom
annotated source: entity
annotated property: IAO_0000600
annotated target: An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/001-001

continuant
type: Class
subclass of: entity
subclass of: Restriction
  on property: part of
  all values from: continuant
disjoint with: occurrent
disjoint with: Restriction
  on property: part of
  some values from: occurrent
BFO_0000179: continuant
BFO_0000180: Continuant
IAO_0000115: An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.
IAO_0000116: BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240
IAO_0000116: Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants
IAO_0000412: obi.owl
IAO_0000412: ro.owl
IAO_0000600: A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])
IAO_0000601: if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])
IAO_0000601: if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])
IAO_0000601: if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])
IAO_0000602: (forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002]
IAO_0000602: (forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001]
IAO_0000602: (forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002]
IAO_0000602: (forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002]

Axiom
annotated source: continuant
annotated property: IAO_0000116
annotated target: Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/0000007

Axiom
annotated source: continuant
annotated property: IAO_0000600
annotated target: A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/008-002

Axiom
annotated source: continuant
annotated property: IAO_0000601
annotated target: if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/126-001

Axiom
annotated source: continuant
annotated property: IAO_0000601
annotated target: if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/009-002

Axiom
annotated source: continuant
annotated property: IAO_0000601
annotated target: if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/011-002

Axiom
annotated source: continuant
annotated property: IAO_0000602
annotated target: (forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/009-002

Axiom
annotated source: continuant
annotated property: IAO_0000602
annotated target: (forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/126-001

Axiom
annotated source: continuant
annotated property: IAO_0000602
annotated target: (forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/008-002

Axiom
annotated source: continuant
annotated property: IAO_0000602
annotated target: (forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/011-002

occurrent
type: Class
subclass of: entity
subclass of: Restriction
  on property: part of
  all values from: occurrent
disjoint with: Restriction
  on property: part of
  some values from: continuant
BFO_0000179: occurrent
BFO_0000180: Occurrent
IAO_0000115: An entity that has temporal parts and that happens, unfolds or develops through time.
IAO_0000116: BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region
IAO_0000116: BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players.
IAO_0000116: Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.
IAO_0000116: Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.
IAO_0000412: ro.owl
IAO_0000600: An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])
IAO_0000601: Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])
IAO_0000601: b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])
IAO_0000602: (forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001]
IAO_0000602: (forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001]

Axiom
annotated source: occurrent
annotated property: IAO_0000116
annotated target: Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/0000006
comment: per discussion with Barry Smith

Axiom
annotated source: occurrent
annotated property: IAO_0000116
annotated target: Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/0000012

Axiom
annotated source: occurrent
annotated property: IAO_0000600
annotated target: An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/077-002

Axiom
annotated source: occurrent
annotated property: IAO_0000601
annotated target: Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/108-001

Axiom
annotated source: occurrent
annotated property: IAO_0000601
annotated target: b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/079-001

Axiom
annotated source: occurrent
annotated property: IAO_0000602
annotated target: (forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/108-001

Axiom
annotated source: occurrent
annotated property: IAO_0000602
annotated target: (forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/079-001

independent continuant
type: Class
subclass of: continuant
subclass of: Restriction
  on property: part of
  all values from: independent continuant
disjoint with: specifically dependent continuant
disjoint with: generically dependent continuant
BFO_0000179: ic
BFO_0000180: IndependentContinuant
IAO_0000112: a chair
IAO_0000112: a heart
IAO_0000112: a leg
IAO_0000112: a molecule
IAO_0000112: a spatial region
IAO_0000112: an atom
IAO_0000112: an orchestra.
IAO_0000112: an organism
IAO_0000112: the bottom right portion of a human torso
IAO_0000112: the interior of your mouth
IAO_0000115: A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.
IAO_0000115: b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
IAO_0000412: ro.owl
IAO_0000601: For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])
IAO_0000601: For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])
IAO_0000602: (forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001]
IAO_0000602: (forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002]
IAO_0000602: (iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002]

Axiom
annotated source: independent continuant
annotated property: IAO_0000115
annotated target: b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
http://purl.obolibrary.org/obo/iao 0010000: http://purl.obolibrary.org/obo/bfo/axiom/017-002

Axiom
annotated source: independent continuant
annotated property: IAO_0000115
annotated target: b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/017-002

Axiom
annotated source: independent continuant
annotated property: IAO_0000601
annotated target: For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/134-001

Axiom
annotated source: independent continuant
annotated property: IAO_0000601
annotated target: For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/018-002

Axiom
annotated source: independent continuant
annotated property: IAO_0000602
annotated target: (forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/134-001

Axiom
annotated source: independent continuant
annotated property: IAO_0000602
annotated target: (forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/018-002

Axiom
annotated source: independent continuant
annotated property: IAO_0000602
annotated target: (iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/017-002

process
type: Class
subclass of: occurrent
BFO_0000179: process
BFO_0000180: Process
IAO_0000112: a process of cell-division, \ a beating of the heart
IAO_0000112: a process of meiosis
IAO_0000112: a process of sleeping
IAO_0000112: the course of a disease
IAO_0000112: the flight of a bird
IAO_0000112: the life of an organism
IAO_0000112: your process of aging.
IAO_0000115: An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.
IAO_0000115: p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])
IAO_0000116: BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)
IAO_0000412: ro.owl
IAO_0000602: (iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003]

Axiom
annotated source: process
annotated property: IAO_0000115
annotated target: p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])
http://purl.obolibrary.org/obo/iao 0010000: http://purl.obolibrary.org/obo/bfo/axiom/083-003

Axiom
annotated source: process
annotated property: IAO_0000115
annotated target: p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/083-003

Axiom
annotated source: process
annotated property: IAO_0000602
annotated target: (iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/083-003

realizable entity
type: Class
subclass of: specifically dependent continuant
subclass of: Restriction
  on property: part of
  all values from: realizable entity
disjoint with: quality
BFO_0000179: realizable
BFO_0000180: RealizableEntity
IAO_0000112: the disposition of this piece of metal to conduct electricity.
IAO_0000112: the disposition of your blood to coagulate
IAO_0000112: the function of your reproductive organs
IAO_0000112: the role of being a doctor
IAO_0000112: the role of this boundary to delineate where Utah and Colorado meet
IAO_0000115: A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances.
IAO_0000412: ro.owl
IAO_0000600: To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])
IAO_0000601: All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])
IAO_0000602: (forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002]
IAO_0000602: (forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002]

Axiom
annotated source: realizable entity
annotated property: IAO_0000600
annotated target: To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/058-002

Axiom
annotated source: realizable entity
annotated property: IAO_0000601
annotated target: All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/060-002

Axiom
annotated source: realizable entity
annotated property: IAO_0000602
annotated target: (forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/060-002

Axiom
annotated source: realizable entity
annotated property: IAO_0000602
annotated target: (forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/058-002

quality
type: Class
subclass of: specifically dependent continuant
subclass of: Restriction
  on property: part of
  all values from: quality

specifically dependent continuant
type: Class
subclass of: continuant
subclass of: Restriction
  on property: part of
  all values from: specifically dependent continuant
disjoint with: generically dependent continuant
BFO_0000179: sdc
BFO_0000180: SpecificallyDependentContinuant
IAO_0000112: Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key
IAO_0000112: of one-sided specifically dependent continuants: the mass of this tomato
IAO_0000112: of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates.
IAO_0000112: the disposition of this fish to decay
IAO_0000112: the function of this heart: to pump blood
IAO_0000112: the mutual dependence of proton donors and acceptors in chemical reactions [79
IAO_0000112: the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction
IAO_0000112: the pink color of a medium rare piece of grilled filet mignon at its center
IAO_0000112: the role of being a doctor
IAO_0000112: the shape of this hole.
IAO_0000112: the smell of this portion of mozzarella
IAO_0000115: A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.
IAO_0000115: b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])
IAO_0000115: b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])
IAO_0000116: Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.
IAO_0000412: ro.owl
IAO_0000602: (iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003]

Axiom
annotated source: specifically dependent continuant
annotated property: IAO_0000115
annotated target: b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/131-004

Axiom
annotated source: specifically dependent continuant
annotated property: IAO_0000115
annotated target: b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/050-003

Axiom
annotated source: specifically dependent continuant
annotated property: IAO_0000116
annotated target: Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/0000005
comment: per discussion with Barry Smith

Axiom
annotated source: specifically dependent continuant
annotated property: IAO_0000602
annotated target: (iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/050-003

role
type: Class
subclass of: realizable entity
BFO_0000179: role
BFO_0000180: Role
IAO_0000112: John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married.
IAO_0000112: the priest role
IAO_0000112: the role of a boundary to demarcate two neighboring administrative territories
IAO_0000112: the role of a building in serving as a military target
IAO_0000112: the role of a stone in marking a property boundary
IAO_0000112: the role of subject in a clinical trial
IAO_0000112: the student role
IAO_0000115: A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts.
IAO_0000116: BFO 2 Reference: One major family of examples of non-rigid universals involves roles, and ontologies developed for corresponding administrative purposes may consist entirely of representatives of entities of this sort. Thus ‘professor’, defined as follows,b instance_of professor at t =Def. there is some c, c instance_of professor role & c inheres_in b at t.denotes a non-rigid universal and so also do ‘nurse’, ‘student’, ‘colonel’, ‘taxpayer’, and so forth. (These terms are all, in the jargon of philosophy, phase sortals.) By using role terms in definitions, we can create a BFO conformant treatment of such entities drawing on the fact that, while an instance of professor may be simultaneously an instance of trade union member, no instance of the type professor role is also (at any time) an instance of the type trade union member role (any more than any instance of the type color is at any time an instance of the type length).If an ontology of employment positions should be defined in terms of roles following the above pattern, this enables the ontology to do justice to the fact that individuals instantiate the corresponding universals – professor, sergeant, nurse – only during certain phases in their lives.
IAO_0000412: ro.owl
IAO_0000600: b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])
IAO_0000602: (forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001]

Axiom
annotated source: role
annotated property: IAO_0000600
annotated target: b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/061-001

Axiom
annotated source: role
annotated property: IAO_0000602
annotated target: (forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/061-001

fiat object
type: Class
subclass of: material entity
BFO_0000179: fiat-object-part
BFO_0000180: FiatObjectPart
IAO_0000112: or with divisions drawn by cognitive subjects for practical reasons, such as the division of a cake (before slicing) into (what will become) slices (and thus member parts of an object aggregate). However, this does not mean that fiat object parts are dependent for their existence on divisions or delineations effected by cognitive subjects. If, for example, it is correct to conceive geological layers of the Earth as fiat object parts of the Earth, then even though these layers were first delineated in recent times, still existed long before such delineation and what holds of these layers (for example that the oldest layers are also the lowest layers) did not begin to hold because of our acts of delineation.Treatment of material entity in BFOExamples viewed by some as problematic cases for the trichotomy of fiat object part, object, and object aggregate include: a mussel on (and attached to) a rock, a slime mold, a pizza, a cloud, a galaxy, a railway train with engine and multiple carriages, a clonal stand of quaking aspen, a bacterial community (biofilm), a broken femur. Note that, as Aristotle already clearly recognized, such problematic cases – which lie at or near the penumbra of instances defined by the categories in question – need not invalidate these categories. The existence of grey objects does not prove that there are not objects which are black and objects which are white; the existence of mules does not prove that there are not objects which are donkeys and objects which are horses. It does, however, show that the examples in question need to be addressed carefully in order to show how they can be fitted into the proposed scheme, for example by recognizing additional subdivisions [29
IAO_0000112: the FMA:regional parts of an intact human body.
IAO_0000112: the Western hemisphere of the Earth
IAO_0000112: the division of the brain into regions
IAO_0000112: the division of the planet into hemispheres
IAO_0000112: the dorsal and ventral surfaces of the body
IAO_0000112: the upper and lower lobes of the left lung
IAO_0000116: BFO 2 Reference: Most examples of fiat object parts are associated with theoretically drawn divisions
IAO_0000600: b is a fiat object part = Def. b is a material entity which is such that for all times t, if b exists at t then there is some object c such that b proper continuant_part of c at t and c is demarcated from the remainder of c by a two-dimensional continuant fiat boundary. (axiom label in BFO2 Reference: [027-004])
IAO_0000602: (forall (x) (if (FiatObjectPart x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y) (and (Object y) (properContinuantPartOfAt x y t)))))))) // axiom label in BFO2 CLIF: [027-004]
label: fiat object part

Axiom
annotated source: fiat object
annotated property: IAO_0000600
annotated target: b is a fiat object part = Def. b is a material entity which is such that for all times t, if b exists at t then there is some object c such that b proper continuant_part of c at t and c is demarcated from the remainder of c by a two-dimensional continuant fiat boundary. (axiom label in BFO2 Reference: [027-004])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/027-004

Axiom
annotated source: fiat object
annotated property: IAO_0000602
annotated target: (forall (x) (if (FiatObjectPart x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y) (and (Object y) (properContinuantPartOfAt x y t)))))))) // axiom label in BFO2 CLIF: [027-004]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/027-004

object aggregate
type: Class
subclass of: material entity
BFO_0000179: object-aggregate
BFO_0000180: ObjectAggregate
IAO_0000112: a collection of cells in a blood biobank.
IAO_0000112: a swarm of bees is an aggregate of members who are linked together through natural bonds
IAO_0000112: a symphony orchestra
IAO_0000112: an organization is an aggregate whose member parts have roles of specific types (for example in a jazz band, a chess club, a football team)
IAO_0000112: defined by fiat: the aggregate of members of an organization
IAO_0000112: defined through physical attachment: the aggregate of atoms in a lump of granite
IAO_0000112: defined through physical containment: the aggregate of molecules of carbon dioxide in a sealed container
IAO_0000112: defined via attributive delimitations such as: the patients in this hospital
IAO_0000112: the aggregate of bearings in a constant velocity axle joint
IAO_0000112: the aggregate of blood cells in your body
IAO_0000112: the nitrogen atoms in the atmosphere
IAO_0000112: the restaurants in Palo Alto
IAO_0000112: your collection of Meissen ceramic plates.
IAO_0000116: An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
IAO_0000116: BFO 2 Reference: object aggregates may gain and lose parts while remaining numerically identical (one and the same individual) over time. This holds both for aggregates whose membership is determined naturally (the aggregate of cells in your body) and aggregates determined by fiat (a baseball team, a congressional committee).
IAO_0000119: ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158.
IAO_0000600: b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])
IAO_0000602: (forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004]

Axiom
annotated source: object aggregate
annotated property: IAO_0000116
annotated target: An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/0000011

Axiom
annotated source: object aggregate
annotated property: IAO_0000116
annotated target: An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/0000301

Axiom
annotated source: object aggregate
annotated property: IAO_0000119
annotated target: ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158.
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/0000300

Axiom
annotated source: object aggregate
annotated property: IAO_0000600
annotated target: b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/025-004

Axiom
annotated source: object aggregate
annotated property: IAO_0000602
annotated target: (forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/025-004

site
type: Class
subclass of: immaterial entity

object
type: Class
subclass of: material entity

generically dependent continuant
type: Class
subclass of: continuant
subclass of: Restriction
  on property: part of
  all values from: generically dependent continuant
BFO_0000179: gdc
BFO_0000180: GenericallyDependentContinuant
IAO_0000112: The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity.
IAO_0000112: the pdf file on your laptop, the pdf file that is a copy thereof on my laptop
IAO_0000112: the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule.
IAO_0000115: A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.
IAO_0000115: b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])
IAO_0000412: obi.owl
IAO_0000602: (iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001]

Axiom
annotated source: generically dependent continuant
annotated property: IAO_0000115
annotated target: b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/074-001

Axiom
annotated source: generically dependent continuant
annotated property: IAO_0000602
annotated target: (iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/074-001

material entity
type: Class
subclass of: independent continuant
disjoint with: immaterial entity
disjoint with: Restriction
  on property: part of
  some values from: immaterial entity
BFO_0000179: material
BFO_0000180: MaterialEntity
IAO_0000112: a flame
IAO_0000112: a forest fire
IAO_0000112: a human being
IAO_0000112: a hurricane
IAO_0000112: a photon
IAO_0000112: a puff of smoke
IAO_0000112: a sea wave
IAO_0000112: a tornado
IAO_0000112: an aggregate of human beings.
IAO_0000112: an energy wave
IAO_0000112: an epidemic
IAO_0000112: the undetached arm of a human being
IAO_0000115: An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.
IAO_0000116: BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60
IAO_0000116: BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity.
IAO_0000116: BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here.
IAO_0000412: ro.owl
IAO_0000600: A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])
IAO_0000601: Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])
IAO_0000601: every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])
IAO_0000602: (forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002]
IAO_0000602: (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002]
IAO_0000602: (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002]

Axiom
annotated source: material entity
annotated property: IAO_0000600
annotated target: A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/019-002

Axiom
annotated source: material entity
annotated property: IAO_0000601
annotated target: Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/020-002

Axiom
annotated source: material entity
annotated property: IAO_0000601
annotated target: every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/021-002

Axiom
annotated source: material entity
annotated property: IAO_0000602
annotated target: (forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/019-002

Axiom
annotated source: material entity
annotated property: IAO_0000602
annotated target: (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/021-002

Axiom
annotated source: material entity
annotated property: IAO_0000602
annotated target: (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/020-002

immaterial entity
type: Class
subclass of: independent continuant
disjoint with: Restriction
  on property: has part
  some values from: material entity

anatomical structure
type: Class
subclass of: material anatomical entity
IAO_0000412: caro.owl

material anatomical entity
type: Class
subclass of: material entity
IAO_0000412: caro.owl

organism or virus or viroid
type: Class
subclass of: organismal entity
IAO_0000115: Material anatomical entity that is a member of an individual species or is a viral or viroid particle.
IAO_0000589: organism or virus
IAO created by: Melissa Haendel
IAO creation date: 9/18/11

electron
type: Class
subclass of: lepton
IAO_0000115: Elementary particle not affected by the strong force having a spin 1/2, a negative elementary charge and a rest mass of 0.000548579903(13) u, or 0.51099906(15) MeV.
has exact synonym: electron
has related synonym: Elektron
has related synonym: beta
has related synonym: beta(-)
has related synonym: beta-particle
has related synonym: e
has related synonym: e(-)
has related synonym: e-
has related synonym: negatron

Axiom
annotated source: electron
annotated property: hasExactSynonym
annotated target: electron
has db xref: ChEBI

Axiom
annotated source: electron
annotated property: hasExactSynonym
annotated target: electron
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: electron
annotated property: hasExactSynonym
annotated target: electron
has db xref: KEGG_COMPOUND

Axiom
annotated source: electron
annotated property: hasRelatedSynonym
annotated target: Elektron
has db xref: ChEBI

Axiom
annotated source: electron
annotated property: hasRelatedSynonym
annotated target: beta
has db xref: IUPAC

Axiom
annotated source: electron
annotated property: hasRelatedSynonym
annotated target: beta(-)
has db xref: ChEBI

Axiom
annotated source: electron
annotated property: hasRelatedSynonym
annotated target: beta-particle
has db xref: IUPAC

Axiom
annotated source: electron
annotated property: hasRelatedSynonym
annotated target: e
has db xref: IUPAC

Axiom
annotated source: electron
annotated property: hasRelatedSynonym
annotated target: e(-)
has db xref: UniProt

Axiom
annotated source: electron
annotated property: hasRelatedSynonym
annotated target: e-
has db xref: KEGG_COMPOUND

Axiom
annotated source: electron
annotated property: hasRelatedSynonym
annotated target: negatron
has db xref: IUPAC

inorganic acid
type: Class
subclass of: Bronsted acid
IAO_0000115: A Bronsted acid derived from one or more inorganic compounds. Inorganic acids (also known as mineral acids) form hydrons and conjugate base ions when dissolved in water.
has related synonym: inorganic acids
has related synonym: mineral acid
has related synonym: mineral acids

Axiom
annotated source: inorganic acid
annotated property: hasRelatedSynonym
annotated target: inorganic acids
has db xref: ChEBI

Axiom
annotated source: inorganic acid
annotated property: hasRelatedSynonym
annotated target: mineral acid
has db xref: ChEBI

Axiom
annotated source: inorganic acid
annotated property: hasRelatedSynonym
annotated target: mineral acids
has db xref: ChEBI

gas molecular entity
type: Class
subclass of: main group molecular entity
IAO_0000115: Any main group molecular entity that is gaseous at standard temperature and pressure (STP; 0degreeC and 100 kPa).
has related synonym: gas molecular entities
has related synonym: gaseous molecular entities
has related synonym: gaseous molecular entity

Axiom
annotated source: gas molecular entity
annotated property: hasRelatedSynonym
annotated target: gas molecular entities
has db xref: ChEBI

Axiom
annotated source: gas molecular entity
annotated property: hasRelatedSynonym
annotated target: gaseous molecular entities
has db xref: ChEBI

Axiom
annotated source: gas molecular entity
annotated property: hasRelatedSynonym
annotated target: gaseous molecular entity
has db xref: ChEBI

electron donor
type: Class
subclass of: donor

acceptor
type: Class
subclass of: chemical role
IAO_0000115: A molecular entity that can accept an electron, a pair of electrons, an atom or a group from another molecular entity.
has exact synonym: Acceptor
has related synonym: A
has related synonym: Akzeptor
has related synonym: Hydrogen-acceptor
has related synonym: Oxidized donor
has related synonym: accepteur

Axiom
annotated source: acceptor
annotated property: hasExactSynonym
annotated target: Acceptor
has db xref: KEGG_COMPOUND

Axiom
annotated source: acceptor
annotated property: hasRelatedSynonym
annotated target: A
has db xref: KEGG_COMPOUND

Axiom
annotated source: acceptor
annotated property: hasRelatedSynonym
annotated target: Akzeptor
has db xref: ChEBI

Axiom
annotated source: acceptor
annotated property: hasRelatedSynonym
annotated target: Hydrogen-acceptor
has db xref: KEGG_COMPOUND

Axiom
annotated source: acceptor
annotated property: hasRelatedSynonym
annotated target: Oxidized donor
has db xref: KEGG_COMPOUND

Axiom
annotated source: acceptor
annotated property: hasRelatedSynonym
annotated target: accepteur
has db xref: ChEBI

water
type: Class
subclass of: oxygen hydride
subclass of: mononuclear parent hydride
subclass of: inorganic hydroxy compound
subclass of: Restriction
  on property: has role
  some values from: amphiprotic solvent
subclass of: Restriction
  on property: has role
  some values from: mouse metabolite
subclass of: Restriction
  on property: has role
  some values from: Saccharomyces cerevisiae metabolite
subclass of: Restriction
  on property: has role
  some values from: greenhouse gas
subclass of: Restriction
  on property: has role
  some values from: Escherichia coli metabolite
subclass of: Restriction
  on property: has role
  some values from: human metabolite
subclass of: Restriction
  on property: is conjugate acid of
  some values from: hydroxide
subclass of: Restriction
  on property: is conjugate base of
  some values from: oxonium
IAO_0000115: An oxygen hydride consisting of an oxygen atom that is covalently bonded to two hydrogen atoms.
has exact synonym: WATER
has exact synonym: Water
has exact synonym: oxidane
has exact synonym: water
has related synonym: BOUND WATER
has related synonym: H2O
has related synonym: HOH
has related synonym: Wasser
has related synonym: [OH2]
has related synonym: acqua
has related synonym: agua
has related synonym: aqua
has related synonym: dihydridooxygen
has related synonym: dihydrogen oxide
has related synonym: eau
has related synonym: hydrogen hydroxide

Axiom
annotated source: water
annotated property: hasExactSynonym
annotated target: WATER
has db xref: PDBeChem

Axiom
annotated source: water
annotated property: hasExactSynonym
annotated target: Water
has db xref: KEGG_COMPOUND

Axiom
annotated source: water
annotated property: hasExactSynonym
annotated target: oxidane
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: water
annotated property: hasExactSynonym
annotated target: water
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: water
annotated property: hasRelatedSynonym
annotated target: BOUND WATER
has db xref: PDBeChem

Axiom
annotated source: water
annotated property: hasRelatedSynonym
annotated target: H2O
has db xref: KEGG_COMPOUND

Axiom
annotated source: water
annotated property: hasRelatedSynonym
annotated target: H2O
has db xref: UniProt

Axiom
annotated source: water
annotated property: hasRelatedSynonym
annotated target: HOH
has db xref: ChEBI

Axiom
annotated source: water
annotated property: hasRelatedSynonym
annotated target: Wasser
has db xref: ChEBI

Axiom
annotated source: water
annotated property: hasRelatedSynonym
annotated target: [OH2]
has db xref: IUPAC

Axiom
annotated source: water
annotated property: hasRelatedSynonym
annotated target: acqua
has db xref: ChEBI

Axiom
annotated source: water
annotated property: hasRelatedSynonym
annotated target: agua
has db xref: ChEBI

Axiom
annotated source: water
annotated property: hasRelatedSynonym
annotated target: aqua
has db xref: ChEBI

Axiom
annotated source: water
annotated property: hasRelatedSynonym
annotated target: dihydridooxygen
has db xref: IUPAC

Axiom
annotated source: water
annotated property: hasRelatedSynonym
annotated target: dihydrogen oxide
has db xref: IUPAC

Axiom
annotated source: water
annotated property: hasRelatedSynonym
annotated target: eau
has db xref: ChEBI

Axiom
annotated source: water
annotated property: hasRelatedSynonym
annotated target: hydrogen hydroxide
has db xref: ChEBI

dioxygen
type: Class
subclass of: gas molecular entity
subclass of: elemental molecule
subclass of: diatomic oxygen

halide anion
type: Class
subclass of: monoatomic monoanion
subclass of: monovalent inorganic anion
IAO_0000115: A monoatomic monoanion resulting from the addition of an electron to any halogen atom.
has exact synonym: halide ions
has related synonym: HX
has related synonym: Halide
has related synonym: a halide anion
has related synonym: halide anions
has related synonym: halide(1-)
has related synonym: halides
has related synonym: halogen anion

Axiom
annotated source: halide anion
annotated property: hasExactSynonym
annotated target: halide ions
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: halide anion
annotated property: hasRelatedSynonym
annotated target: HX
has db xref: KEGG_COMPOUND

Axiom
annotated source: halide anion
annotated property: hasRelatedSynonym
annotated target: Halide
has db xref: KEGG_COMPOUND

Axiom
annotated source: halide anion
annotated property: hasRelatedSynonym
annotated target: a halide anion
has db xref: UniProt

Axiom
annotated source: halide anion
annotated property: hasRelatedSynonym
annotated target: halide anions
has db xref: ChEBI

Axiom
annotated source: halide anion
annotated property: hasRelatedSynonym
annotated target: halide(1-)
has db xref: ChEBI

Axiom
annotated source: halide anion
annotated property: hasRelatedSynonym
annotated target: halides
has db xref: ChEBI

Axiom
annotated source: halide anion
annotated property: hasRelatedSynonym
annotated target: halogen anion
has db xref: ChEBI

hydroxide
type: Class
subclass of: oxygen hydride
subclass of: Restriction
  on property: has role
  some values from: mouse metabolite
subclass of: Restriction
  on property: is conjugate base of
  some values from: water
has exact synonym: hydridooxygenate(1-)
has exact synonym: hydroxide
has exact synonym: oxidanide
has related synonym: HO-
has related synonym: HYDROXIDE ION
has related synonym: Hydroxide ion
has related synonym: OH(-)
has related synonym: OH-

Axiom
annotated source: hydroxide
annotated property: hasExactSynonym
annotated target: hydridooxygenate(1-)
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydroxide
annotated property: hasExactSynonym
annotated target: hydroxide
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydroxide
annotated property: hasExactSynonym
annotated target: oxidanide
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydroxide
annotated property: hasRelatedSynonym
annotated target: HO-
has db xref: KEGG_COMPOUND

Axiom
annotated source: hydroxide
annotated property: hasRelatedSynonym
annotated target: HYDROXIDE ION
has db xref: PDBeChem

Axiom
annotated source: hydroxide
annotated property: hasRelatedSynonym
annotated target: Hydroxide ion
has db xref: KEGG_COMPOUND

Axiom
annotated source: hydroxide
annotated property: hasRelatedSynonym
annotated target: OH(-)
has db xref: IUPAC

Axiom
annotated source: hydroxide
annotated property: hasRelatedSynonym
annotated target: OH-
has db xref: KEGG_COMPOUND

carbon dioxide
type: Class
subclass of: gas molecular entity
subclass of: carbon oxide
subclass of: one-carbon compound
subclass of: food additive
IAO_0000115: A one-carbon compound with formula CO2 in which the carbon is attached to each oxygen atom by a double bond. A colourless, odourless gas under normal conditions, it is produced during respiration by all animals, fungi and microorganisms that depend directly or indirectly on living or decaying plants for food.

hydrogen chloride
type: Class
subclass of: gas molecular entity
subclass of: hydrogen halide
subclass of: chlorine molecular entity
subclass of: mononuclear parent hydride
subclass of: food additive
subclass of: Restriction
  on property: has role
  some values from: mouse metabolite
subclass of: Restriction
  on property: is conjugate acid of
  some values from: chloride
subclass of: Restriction
  on property: is conjugate base of
  some values from: chloronium
IAO_0000115: A mononuclear parent hydride consisting of covalently bonded hydrogen and chlorine atoms.
has exact synonym: Hydrogen chloride
has exact synonym: chlorane
has exact synonym: chloridohydrogen
has exact synonym: hydrogen chloride
has related synonym: Chlorwasserstoff
has related synonym: HCl
has related synonym: Hydrochloride
has related synonym: Hydrogenchlorid
has related synonym: Wasserstoffchlorid
has related synonym: [HCl]
has related synonym: chlorure d'hydrogene
has related synonym: cloruro de hidrogeno
has related synonym: hydrochloric acid

Axiom
annotated source: hydrogen chloride
annotated property: hasExactSynonym
annotated target: Hydrogen chloride
has db xref: KEGG_COMPOUND

Axiom
annotated source: hydrogen chloride
annotated property: hasExactSynonym
annotated target: chlorane
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydrogen chloride
annotated property: hasExactSynonym
annotated target: chloridohydrogen
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydrogen chloride
annotated property: hasExactSynonym
annotated target: hydrogen chloride
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydrogen chloride
annotated property: hasRelatedSynonym
annotated target: Chlorwasserstoff
has db xref: ChEBI

Axiom
annotated source: hydrogen chloride
annotated property: hasRelatedSynonym
annotated target: HCl
has db xref: KEGG_COMPOUND

Axiom
annotated source: hydrogen chloride
annotated property: hasRelatedSynonym
annotated target: Hydrochloride
has db xref: KEGG_COMPOUND

Axiom
annotated source: hydrogen chloride
annotated property: hasRelatedSynonym
annotated target: Hydrogenchlorid
has db xref: ChEBI

Axiom
annotated source: hydrogen chloride
annotated property: hasRelatedSynonym
annotated target: Wasserstoffchlorid
has db xref: ChEBI

Axiom
annotated source: hydrogen chloride
annotated property: hasRelatedSynonym
annotated target: [HCl]
has db xref: IUPAC

Axiom
annotated source: hydrogen chloride
annotated property: hasRelatedSynonym
annotated target: chlorure d'hydrogene
has db xref: ChEBI

Axiom
annotated source: hydrogen chloride
annotated property: hasRelatedSynonym
annotated target: cloruro de hidrogeno
has db xref: ChEBI

Axiom
annotated source: hydrogen chloride
annotated property: hasRelatedSynonym
annotated target: hydrochloric acid
has db xref: ChemIDplus

donor
type: Class
subclass of: chemical role
IAO_0000115: A molecular entity that can transfer ("donate") an electron, a pair of electrons, an atom or a group to another molecular entity.
has exact synonym: Donor
has related synonym: Donator
has related synonym: donneur

Axiom
annotated source: donor
annotated property: hasExactSynonym
annotated target: Donor
has db xref: KEGG_COMPOUND

Axiom
annotated source: donor
annotated property: hasRelatedSynonym
annotated target: Donator
has db xref: ChEBI

Axiom
annotated source: donor
annotated property: hasRelatedSynonym
annotated target: donneur
has db xref: ChEBI

chloride
type: Class
subclass of: halide anion
subclass of: monoatomic chlorine
subclass of: Restriction
  on property: has role
  some values from: cofactor
subclass of: Restriction
  on property: has role
  some values from: Escherichia coli metabolite
subclass of: Restriction
  on property: has role
  some values from: human metabolite
subclass of: Restriction
  on property: is conjugate base of
  some values from: hydrogen chloride
IAO_0000115: A halide anion formed when chlorine picks up an electron to form an an anion.
has exact synonym: Chloride
has exact synonym: chloride
has exact synonym: chloride(1-)
has related synonym: CHLORIDE ION
has related synonym: Chloride ion
has related synonym: Chloride(1-)
has related synonym: Chlorine anion
has related synonym: Cl(-)
has related synonym: Cl-

Axiom
annotated source: chloride
annotated property: hasExactSynonym
annotated target: Chloride
has db xref: KEGG_COMPOUND

Axiom
annotated source: chloride
annotated property: hasExactSynonym
annotated target: chloride
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: chloride
annotated property: hasExactSynonym
annotated target: chloride
has db xref: UniProt

Axiom
annotated source: chloride
annotated property: hasExactSynonym
annotated target: chloride(1-)
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: chloride
annotated property: hasRelatedSynonym
annotated target: CHLORIDE ION
has db xref: PDBeChem

Axiom
annotated source: chloride
annotated property: hasRelatedSynonym
annotated target: Chloride ion
has db xref: KEGG_COMPOUND

Axiom
annotated source: chloride
annotated property: hasRelatedSynonym
annotated target: Chloride(1-)
has db xref: ChemIDplus

Axiom
annotated source: chloride
annotated property: hasRelatedSynonym
annotated target: Chlorine anion
has db xref: NIST_Chemistry_WebBook

Axiom
annotated source: chloride
annotated property: hasRelatedSynonym
annotated target: Cl(-)
has db xref: IUPAC

Axiom
annotated source: chloride
annotated property: hasRelatedSynonym
annotated target: Cl-
has db xref: KEGG_COMPOUND

dinitrogen
type: Class
subclass of: gas molecular entity
subclass of: elemental molecule
subclass of: diatomic nitrogen
subclass of: Restriction
  on property: has role
  some values from: food packaging gas
subclass of: Restriction
  on property: has role
  some values from: food propellant
subclass of: Restriction
  on property: is conjugate base of
  some values from: diazynium
IAO_0000115: An elemental molecule consisting of two trivalently-bonded nitrogen atoms.
has exact synonym: dinitrogen
has related synonym: N#N
has related synonym: N2
has related synonym: Nitrogen
has related synonym: molecular nitrogen

Axiom
annotated source: dinitrogen
annotated property: hasExactSynonym
annotated target: dinitrogen
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: dinitrogen
annotated property: hasRelatedSynonym
annotated target: N#N
has db xref: ChEBI

Axiom
annotated source: dinitrogen
annotated property: hasRelatedSynonym
annotated target: N2
has db xref: IUPAC

Axiom
annotated source: dinitrogen
annotated property: hasRelatedSynonym
annotated target: N2
has db xref: KEGG_COMPOUND

Axiom
annotated source: dinitrogen
annotated property: hasRelatedSynonym
annotated target: N2
has db xref: UniProt

Axiom
annotated source: dinitrogen
annotated property: hasRelatedSynonym
annotated target: Nitrogen
has db xref: KEGG_COMPOUND

Axiom
annotated source: dinitrogen
annotated property: hasRelatedSynonym
annotated target: molecular nitrogen
has db xref: ChEBI

hydrogen halide
type: Class
subclass of: hydracid
subclass of: Restriction
  on property: has role
  some values from: inorganic acid
has exact synonym: hydrogen halide
has exact synonym: hydrogen halides
has related synonym: HX
has related synonym: hydrogen halides

Axiom
annotated source: hydrogen halide
annotated property: hasExactSynonym
annotated target: hydrogen halide
has db xref: IUPAC

Axiom
annotated source: hydrogen halide
annotated property: hasExactSynonym
annotated target: hydrogen halides
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydrogen halide
annotated property: hasRelatedSynonym
annotated target: HX
has db xref: UniProt

Axiom
annotated source: hydrogen halide
annotated property: hasRelatedSynonym
annotated target: hydrogen halides
has db xref: ChEBI

alkali metal atom
type: Class
subclass of: main group element atom
subclass of: metal atom
subclass of: s-block element atom
has exact synonym: alkali metals
has related synonym: Alkalimetall
has related synonym: Alkalimetalle
has related synonym: alkali metal
has related synonym: metal alcalin
has related synonym: metal alcalino
has related synonym: metales alcalinos
has related synonym: metaux alcalins

Axiom
annotated source: alkali metal atom
annotated property: hasExactSynonym
annotated target: alkali metals
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: alkali metal atom
annotated property: hasRelatedSynonym
annotated target: Alkalimetall
has db xref: ChEBI

Axiom
annotated source: alkali metal atom
annotated property: hasRelatedSynonym
annotated target: Alkalimetalle
has db xref: ChEBI

Axiom
annotated source: alkali metal atom
annotated property: hasRelatedSynonym
annotated target: alkali metal
has db xref: ChEBI

Axiom
annotated source: alkali metal atom
annotated property: hasRelatedSynonym
annotated target: metal alcalin
has db xref: ChEBI

Axiom
annotated source: alkali metal atom
annotated property: hasRelatedSynonym
annotated target: metal alcalino
has db xref: ChEBI

Axiom
annotated source: alkali metal atom
annotated property: hasRelatedSynonym
annotated target: metales alcalinos
has db xref: ChEBI

Axiom
annotated source: alkali metal atom
annotated property: hasRelatedSynonym
annotated target: metaux alcalins
has db xref: ChEBI

anion
type: Class
subclass of: ion
IAO_0000115: A monoatomic or polyatomic species having one or more elementary charges of the electron.
has exact synonym: Anion
has exact synonym: anion
has related synonym: Anionen
has related synonym: aniones
has related synonym: anions

Axiom
annotated source: anion
annotated property: hasExactSynonym
annotated target: Anion
has db xref: ChEBI

Axiom
annotated source: anion
annotated property: hasExactSynonym
annotated target: anion
has db xref: ChEBI

Axiom
annotated source: anion
annotated property: hasExactSynonym
annotated target: anion
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: anion
annotated property: hasRelatedSynonym
annotated target: Anionen
has db xref: ChEBI

Axiom
annotated source: anion
annotated property: hasRelatedSynonym
annotated target: aniones
has db xref: ChEBI

Axiom
annotated source: anion
annotated property: hasRelatedSynonym
annotated target: anions
has db xref: IUPAC

base
type: Class
subclass of: chemical role
IAO_0000115: A molecular entity having an available pair of electrons capable of forming a covalent bond with a hydron (Bronsted base) or with the vacant orbital of some other molecular entity (Lewis base).
has exact synonym: Base
has exact synonym: base
has related synonym: Base1
has related synonym: Base2
has related synonym: Basen
has related synonym: Nucleobase
has related synonym: bases

Axiom
annotated source: base
annotated property: hasExactSynonym
annotated target: Base
has db xref: ChEBI

Axiom
annotated source: base
annotated property: hasExactSynonym
annotated target: base
has db xref: ChEBI

Axiom
annotated source: base
annotated property: hasExactSynonym
annotated target: base
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: base
annotated property: hasRelatedSynonym
annotated target: Base1
has db xref: KEGG_COMPOUND

Axiom
annotated source: base
annotated property: hasRelatedSynonym
annotated target: Base2
has db xref: KEGG_COMPOUND

Axiom
annotated source: base
annotated property: hasRelatedSynonym
annotated target: Basen
has db xref: ChEBI

Axiom
annotated source: base
annotated property: hasRelatedSynonym
annotated target: Nucleobase
has db xref: KEGG_COMPOUND

Axiom
annotated source: base
annotated property: hasRelatedSynonym
annotated target: bases
has db xref: ChEBI

carbon oxide
type: Class
subclass of: organic oxide
subclass of: organooxygen compound

chloride salt
type: Class
subclass of: chlorine molecular entity
subclass of: halide salt
subclass of: Restriction
  on property: has part
  some values from: chloride
has related synonym: chloride salts
has related synonym: chlorides

Axiom
annotated source: chloride salt
annotated property: hasRelatedSynonym
annotated target: chloride salts
has db xref: ChEBI

Axiom
annotated source: chloride salt
annotated property: hasRelatedSynonym
annotated target: chlorides
has db xref: ChEBI

chlorine atom
type: Class
subclass of: halogen
subclass of: Restriction
  on property: has role
  some values from: micronutrient
has exact synonym: chlorine
has related synonym: 17Cl
has related synonym: Chlor
has related synonym: Cl
has related synonym: chlore
has related synonym: chlorine
has related synonym: chlorum
has related synonym: cloro

Axiom
annotated source: chlorine atom
annotated property: hasExactSynonym
annotated target: chlorine
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: chlorine atom
annotated property: hasRelatedSynonym
annotated target: 17Cl
has db xref: IUPAC

Axiom
annotated source: chlorine atom
annotated property: hasRelatedSynonym
annotated target: Chlor
has db xref: ChEBI

Axiom
annotated source: chlorine atom
annotated property: hasRelatedSynonym
annotated target: Cl
has db xref: IUPAC

Axiom
annotated source: chlorine atom
annotated property: hasRelatedSynonym
annotated target: chlore
has db xref: ChEBI

Axiom
annotated source: chlorine atom
annotated property: hasRelatedSynonym
annotated target: chlorine
has db xref: ChEBI

Axiom
annotated source: chlorine atom
annotated property: hasRelatedSynonym
annotated target: chlorum
has db xref: ChEBI

Axiom
annotated source: chlorine atom
annotated property: hasRelatedSynonym
annotated target: cloro
has db xref: ChEBI

chlorine molecular entity
type: Class
subclass of: halogen molecular entity
subclass of: Restriction
  on property: has part
  some values from: chlorine atom
IAO_0000115: A halogen molecular entity containing one or more atoms of chlorine.

cofactor
type: Class
subclass of: biochemical role
IAO_0000115: An organic molecule or ion (usually a metal ion) that is required by an enzyme for its activity. It may be attached either loosely (coenzyme) or tightly (prosthetic group).
has exact synonym: cofactor
has exact synonym: cofactors

Axiom
annotated source: cofactor
annotated property: hasExactSynonym
annotated target: cofactor
has db xref: IUPAC

Axiom
annotated source: cofactor
annotated property: hasExactSynonym
annotated target: cofactors
has db xref: IUPAC
has synonym type: IUPAC NAME

molecular entity
type: Class
subclass of: chemical entity
IAO_0000115: Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity.
has exact synonym: molecular entity
has related synonym: entidad molecular
has related synonym: entidades moleculares
has related synonym: entite moleculaire
has related synonym: molecular entities
has related synonym: molekulare Entitaet

Axiom
annotated source: molecular entity
annotated property: hasExactSynonym
annotated target: molecular entity
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: molecular entity
annotated property: hasRelatedSynonym
annotated target: entidad molecular
has db xref: IUPAC

Axiom
annotated source: molecular entity
annotated property: hasRelatedSynonym
annotated target: entidades moleculares
has db xref: IUPAC

Axiom
annotated source: molecular entity
annotated property: hasRelatedSynonym
annotated target: entite moleculaire
has db xref: IUPAC

Axiom
annotated source: molecular entity
annotated property: hasRelatedSynonym
annotated target: molecular entities
has db xref: IUPAC

Axiom
annotated source: molecular entity
annotated property: hasRelatedSynonym
annotated target: molekulare Entitaet
has db xref: ChEBI

monoatomic anion
type: Class
subclass of: anion
subclass of: monoatomic ion
has related synonym: monoatomic anions

Axiom
annotated source: monoatomic anion
annotated property: hasRelatedSynonym
annotated target: monoatomic anions
has db xref: ChEBI

monoatomic cation
type: Class
subclass of: monoatomic ion
subclass of: cation
has related synonym: monoatomic cations

Axiom
annotated source: monoatomic cation
annotated property: hasRelatedSynonym
annotated target: monoatomic cations
has db xref: ChEBI

chemical entity
type: Class
subclass of: material entity
IAO_0000115: A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances.
has exact synonym: chemical entity

Axiom
annotated source: chemical entity
annotated property: hasExactSynonym
annotated target: chemical entity
has db xref: UniProt

biological role
type: Class
subclass of: role
IAO_0000115: A role played by the molecular entity or part thereof within a biological context.
IAO_0000412: chebi.owl
has related synonym: biological function

Axiom
annotated source: biological role
annotated property: hasRelatedSynonym
annotated target: biological function
has db xref: ChEBI

group
type: Class
subclass of: chemical entity
subclass of: Restriction
  on property: has part
  some values from: atom
IAO_0000115: A defined linked collection of atoms or a single atom within a molecular entity.
has exact synonym: group
has related synonym: Gruppe
has related synonym: Rest
has related synonym: groupe
has related synonym: grupo
has related synonym: grupos

Axiom
annotated source: group
annotated property: hasExactSynonym
annotated target: group
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: group
annotated property: hasRelatedSynonym
annotated target: Gruppe
has db xref: ChEBI

Axiom
annotated source: group
annotated property: hasRelatedSynonym
annotated target: Rest
has db xref: ChEBI

Axiom
annotated source: group
annotated property: hasRelatedSynonym
annotated target: groupe
has db xref: IUPAC

Axiom
annotated source: group
annotated property: hasRelatedSynonym
annotated target: grupo
has db xref: IUPAC

Axiom
annotated source: group
annotated property: hasRelatedSynonym
annotated target: grupos
has db xref: IUPAC

halogen molecular entity
type: Class
subclass of: p-block molecular entity
subclass of: Restriction
  on property: has part
  some values from: halogen
has exact synonym: halogen molecular entity
has related synonym: halogen compounds
has related synonym: halogen molecular entities

Axiom
annotated source: halogen molecular entity
annotated property: hasExactSynonym
annotated target: halogen molecular entity
has db xref: ChEBI

Axiom
annotated source: halogen molecular entity
annotated property: hasRelatedSynonym
annotated target: halogen compounds
has db xref: ChEBI

Axiom
annotated source: halogen molecular entity
annotated property: hasRelatedSynonym
annotated target: halogen molecular entities
has db xref: ChEBI

halogen
type: Class
subclass of: nonmetal atom
subclass of: p-block element atom
has exact synonym: halogen
has exact synonym: halogens
has related synonym: Halogene
has related synonym: group 17 elements
has related synonym: group VII elements
has related synonym: halogene
has related synonym: halogenes
has related synonym: halogeno
has related synonym: halogenos

Axiom
annotated source: halogen
annotated property: hasExactSynonym
annotated target: halogen
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: halogen
annotated property: hasExactSynonym
annotated target: halogens
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: halogen
annotated property: hasRelatedSynonym
annotated target: Halogene
has db xref: ChEBI

Axiom
annotated source: halogen
annotated property: hasRelatedSynonym
annotated target: group 17 elements
has db xref: ChEBI

Axiom
annotated source: halogen
annotated property: hasRelatedSynonym
annotated target: group VII elements
has db xref: ChEBI

Axiom
annotated source: halogen
annotated property: hasRelatedSynonym
annotated target: halogene
has db xref: ChEBI

Axiom
annotated source: halogen
annotated property: hasRelatedSynonym
annotated target: halogenes
has db xref: ChEBI

Axiom
annotated source: halogen
annotated property: hasRelatedSynonym
annotated target: halogeno
has db xref: ChEBI

Axiom
annotated source: halogen
annotated property: hasRelatedSynonym
annotated target: halogenos
has db xref: ChEBI

hydroxides
type: Class
subclass of: oxygen molecular entity
subclass of: hydrogen molecular entity
subclass of: heteroatomic molecular entity
subclass of: Restriction
  on property: has part
  some values from: hydroxy group
IAO_0000115: Hydroxides are chemical compounds containing a hydroxy group or salts containing hydroxide (OH(-)).

inorganic anion
type: Class
subclass of: anion
subclass of: inorganic ion
has related synonym: inorganic anions

Axiom
annotated source: inorganic anion
annotated property: hasRelatedSynonym
annotated target: inorganic anions
has db xref: ChEBI

inorganic molecular entity
type: Class
subclass of: molecular entity
IAO_0000115: A molecular entity that contains no carbon.
has related synonym: anorganische Verbindungen
has related synonym: inorganic compounds
has related synonym: inorganic entity
has related synonym: inorganic molecular entities
has related synonym: inorganics

Axiom
annotated source: inorganic molecular entity
annotated property: hasRelatedSynonym
annotated target: anorganische Verbindungen
has db xref: ChEBI

Axiom
annotated source: inorganic molecular entity
annotated property: hasRelatedSynonym
annotated target: inorganic compounds
has db xref: ChEBI

Axiom
annotated source: inorganic molecular entity
annotated property: hasRelatedSynonym
annotated target: inorganic entity
has db xref: ChEBI

Axiom
annotated source: inorganic molecular entity
annotated property: hasRelatedSynonym
annotated target: inorganic molecular entities
has db xref: ChEBI

Axiom
annotated source: inorganic molecular entity
annotated property: hasRelatedSynonym
annotated target: inorganics
has db xref: ChEBI

inorganic salt
type: Class
subclass of: inorganic molecular entity
subclass of: salt
has related synonym: anorganisches Salz
has related synonym: inorganic salts

Axiom
annotated source: inorganic salt
annotated property: hasRelatedSynonym
annotated target: anorganisches Salz
has db xref: ChEBI

Axiom
annotated source: inorganic salt
annotated property: hasRelatedSynonym
annotated target: inorganic salts
has db xref: ChEBI

salt
type: Class
subclass of: heteroatomic molecular entity
subclass of: Restriction
  on property: has part
  some values from: anion
subclass of: Restriction
  on property: has part
  some values from: cation
IAO_0000115: A salt is an assembly of cations and anions.
has exact synonym: salt
has related synonym: Salz
has related synonym: Salze
has related synonym: ionic compound
has related synonym: ionic compounds
has related synonym: sal
has related synonym: sales
has related synonym: salts
has related synonym: sel
has related synonym: sels

Axiom
annotated source: salt
annotated property: hasExactSynonym
annotated target: salt
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: salt
annotated property: hasRelatedSynonym
annotated target: Salz
has db xref: ChEBI

Axiom
annotated source: salt
annotated property: hasRelatedSynonym
annotated target: Salze
has db xref: ChEBI

Axiom
annotated source: salt
annotated property: hasRelatedSynonym
annotated target: ionic compound
has db xref: ChEBI

Axiom
annotated source: salt
annotated property: hasRelatedSynonym
annotated target: ionic compounds
has db xref: ChEBI

Axiom
annotated source: salt
annotated property: hasRelatedSynonym
annotated target: sal
has db xref: ChEBI

Axiom
annotated source: salt
annotated property: hasRelatedSynonym
annotated target: sales
has db xref: ChEBI

Axiom
annotated source: salt
annotated property: hasRelatedSynonym
annotated target: salts
has db xref: ChEBI

Axiom
annotated source: salt
annotated property: hasRelatedSynonym
annotated target: sel
has db xref: ChEBI

Axiom
annotated source: salt
annotated property: hasRelatedSynonym
annotated target: sels
has db xref: ChEBI

monoatomic ion
type: Class
subclass of: ion
subclass of: monoatomic entity
has related synonym: monoatomic ions

Axiom
annotated source: monoatomic ion
annotated property: hasRelatedSynonym
annotated target: monoatomic ions
has db xref: ChEBI

ion
type: Class
subclass of: molecular entity
IAO_0000115: A molecular entity having a net electric charge.
has exact synonym: Ion
has exact synonym: ion
has related synonym: Ionen
has related synonym: iones
has related synonym: ions

Axiom
annotated source: ion
annotated property: hasExactSynonym
annotated target: Ion
has db xref: ChEBI

Axiom
annotated source: ion
annotated property: hasExactSynonym
annotated target: ion
has db xref: ChEBI

Axiom
annotated source: ion
annotated property: hasExactSynonym
annotated target: ion
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: ion
annotated property: hasRelatedSynonym
annotated target: Ionen
has db xref: ChEBI

Axiom
annotated source: ion
annotated property: hasRelatedSynonym
annotated target: iones
has db xref: ChEBI

Axiom
annotated source: ion
annotated property: hasRelatedSynonym
annotated target: ions
has db xref: ChEBI

metabolite
type: Class
subclass of: biochemical role
IAO_0000115: Any intermediate or product resulting from metabolism. The term 'metabolite' subsumes the classes commonly known as primary and secondary metabolites.
has exact synonym: metabolite
has related synonym: metabolites
has related synonym: primary metabolites
has related synonym: secondary metabolites

Axiom
annotated source: metabolite
annotated property: hasExactSynonym
annotated target: metabolite
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: metabolite
annotated property: hasRelatedSynonym
annotated target: metabolites
has db xref: ChEBI

Axiom
annotated source: metabolite
annotated property: hasRelatedSynonym
annotated target: primary metabolites
has db xref: ChEBI

Axiom
annotated source: metabolite
annotated property: hasRelatedSynonym
annotated target: secondary metabolites
has db xref: ChEBI

metal cation
type: Class
subclass of: monoatomic cation
subclass of: inorganic cation
has related synonym: a metal cation
has related synonym: metal cations

Axiom
annotated source: metal cation
annotated property: hasRelatedSynonym
annotated target: a metal cation
has db xref: UniProt

Axiom
annotated source: metal cation
annotated property: hasRelatedSynonym
annotated target: metal cations
has db xref: ChEBI

elemental molecule
type: Class
subclass of: molecule
subclass of: elemental molecular entity
IAO_0000115: A molecule all atoms of which have the same atomic number.
has related synonym: homoatomic molecule
has related synonym: homoatomic molecules

Axiom
annotated source: elemental molecule
annotated property: hasRelatedSynonym
annotated target: homoatomic molecule
has db xref: ChEBI

Axiom
annotated source: elemental molecule
annotated property: hasRelatedSynonym
annotated target: homoatomic molecules
has db xref: ChEBI

molecule
type: Class
subclass of: polyatomic entity
IAO_0000115: Any polyatomic entity that is an electrically neutral entity consisting of more than one atom.
has exact synonym: molecule
has related synonym: Molekuel
has related synonym: molecula
has related synonym: molecules
has related synonym: neutral molecular compounds

Axiom
annotated source: molecule
annotated property: hasExactSynonym
annotated target: molecule
has db xref: IUPAC

Axiom
annotated source: molecule
annotated property: hasRelatedSynonym
annotated target: Molekuel
has db xref: ChEBI

Axiom
annotated source: molecule
annotated property: hasRelatedSynonym
annotated target: molecula
has db xref: IUPAC

Axiom
annotated source: molecule
annotated property: hasRelatedSynonym
annotated target: molecules
has db xref: IUPAC

Axiom
annotated source: molecule
annotated property: hasRelatedSynonym
annotated target: neutral molecular compounds
has db xref: IUPAC

monoatomic monocation
type: Class
subclass of: monoatomic cation
has related synonym: monoatomic monocations
has related synonym: monovalent inorganic cations

Axiom
annotated source: monoatomic monocation
annotated property: hasRelatedSynonym
annotated target: monoatomic monocations
has db xref: ChEBI

Axiom
annotated source: monoatomic monocation
annotated property: hasRelatedSynonym
annotated target: monovalent inorganic cations
has db xref: ChEBI

nitrogen atom
type: Class
subclass of: nonmetal atom
subclass of: pnictogen
subclass of: Restriction
  on property: has role
  some values from: macronutrient
has exact synonym: nitrogen
has related synonym: 7N
has related synonym: N
has related synonym: Stickstoff
has related synonym: azote
has related synonym: nitrogen
has related synonym: nitrogeno

Axiom
annotated source: nitrogen atom
annotated property: hasExactSynonym
annotated target: nitrogen
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: nitrogen atom
annotated property: hasRelatedSynonym
annotated target: 7N
has db xref: IUPAC

Axiom
annotated source: nitrogen atom
annotated property: hasRelatedSynonym
annotated target: N
has db xref: IUPAC

Axiom
annotated source: nitrogen atom
annotated property: hasRelatedSynonym
annotated target: Stickstoff
has db xref: ChEBI

Axiom
annotated source: nitrogen atom
annotated property: hasRelatedSynonym
annotated target: azote
has db xref: IUPAC

Axiom
annotated source: nitrogen atom
annotated property: hasRelatedSynonym
annotated target: nitrogen
has db xref: ChEBI

Axiom
annotated source: nitrogen atom
annotated property: hasRelatedSynonym
annotated target: nitrogeno
has db xref: ChEBI

nonmetal atom
type: Class
subclass of: atom
has exact synonym: nonmetal
has related synonym: Nichtmetall
has related synonym: Nichtmetalle
has related synonym: no metal
has related synonym: no metales
has related synonym: non-metal
has related synonym: non-metaux
has related synonym: nonmetal
has related synonym: nonmetals

Axiom
annotated source: nonmetal atom
annotated property: hasExactSynonym
annotated target: nonmetal
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: nonmetal atom
annotated property: hasRelatedSynonym
annotated target: Nichtmetall
has db xref: ChEBI

Axiom
annotated source: nonmetal atom
annotated property: hasRelatedSynonym
annotated target: Nichtmetalle
has db xref: ChEBI

Axiom
annotated source: nonmetal atom
annotated property: hasRelatedSynonym
annotated target: no metal
has db xref: ChEBI

Axiom
annotated source: nonmetal atom
annotated property: hasRelatedSynonym
annotated target: no metales
has db xref: ChEBI

Axiom
annotated source: nonmetal atom
annotated property: hasRelatedSynonym
annotated target: non-metal
has db xref: ChEBI

Axiom
annotated source: nonmetal atom
annotated property: hasRelatedSynonym
annotated target: non-metaux
has db xref: ChEBI

Axiom
annotated source: nonmetal atom
annotated property: hasRelatedSynonym
annotated target: nonmetal
has db xref: ChEBI

Axiom
annotated source: nonmetal atom
annotated property: hasRelatedSynonym
annotated target: nonmetals
has db xref: ChEBI

organic oxide
type: Class
subclass of: oxide
subclass of: organic molecule
IAO_0000115: An oxide in which the oxygen atom is bonded to a carbon atom.

oxide
type: Class
subclass of: oxygen molecular entity
subclass of: heteroatomic molecular entity
IAO_0000115: An oxide is a chemical compound of oxygen with other chemical elements.
has exact synonym: oxide
has related synonym: oxides

Axiom
annotated source: oxide
annotated property: hasExactSynonym
annotated target: oxide
has db xref: ChEBI

Axiom
annotated source: oxide
annotated property: hasRelatedSynonym
annotated target: oxides
has db xref: ChEBI

oxygen atom
type: Class
subclass of: nonmetal atom
subclass of: chalcogen
subclass of: Restriction
  on property: has role
  some values from: macronutrient
has exact synonym: oxygen
has related synonym: 8O
has related synonym: O
has related synonym: Sauerstoff
has related synonym: oxigeno
has related synonym: oxygen
has related synonym: oxygene

Axiom
annotated source: oxygen atom
annotated property: hasExactSynonym
annotated target: oxygen
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: oxygen atom
annotated property: hasRelatedSynonym
annotated target: 8O
has db xref: IUPAC

Axiom
annotated source: oxygen atom
annotated property: hasRelatedSynonym
annotated target: O
has db xref: IUPAC

Axiom
annotated source: oxygen atom
annotated property: hasRelatedSynonym
annotated target: Sauerstoff
has db xref: ChEBI

Axiom
annotated source: oxygen atom
annotated property: hasRelatedSynonym
annotated target: oxigeno
has db xref: ChEBI

Axiom
annotated source: oxygen atom
annotated property: hasRelatedSynonym
annotated target: oxygen
has db xref: ChEBI

Axiom
annotated source: oxygen atom
annotated property: hasRelatedSynonym
annotated target: oxygene
has db xref: ChEBI

oxygen molecular entity
type: Class
subclass of: chalcogen molecular entity
subclass of: Restriction
  on property: has part
  some values from: oxygen atom
has exact synonym: oxygen molecular entity
has related synonym: oxygen molecular entities

Axiom
annotated source: oxygen molecular entity
annotated property: hasExactSynonym
annotated target: oxygen molecular entity
has db xref: ChEBI

Axiom
annotated source: oxygen molecular entity
annotated property: hasRelatedSynonym
annotated target: oxygen molecular entities
has db xref: ChEBI

sodium atom
type: Class
subclass of: alkali metal atom
subclass of: Restriction
  on property: has role
  some values from: Saccharomyces cerevisiae metabolite
has exact synonym: sodium
has related synonym: 11Na
has related synonym: Na
has related synonym: Natrium
has related synonym: natrium
has related synonym: sodio
has related synonym: sodium

Axiom
annotated source: sodium atom
annotated property: hasExactSynonym
annotated target: sodium
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: sodium atom
annotated property: hasRelatedSynonym
annotated target: 11Na
has db xref: IUPAC

Axiom
annotated source: sodium atom
annotated property: hasRelatedSynonym
annotated target: Na
has db xref: IUPAC

Axiom
annotated source: sodium atom
annotated property: hasRelatedSynonym
annotated target: Natrium
has db xref: ChemIDplus

Axiom
annotated source: sodium atom
annotated property: hasRelatedSynonym
annotated target: natrium
has db xref: IUPAC

Axiom
annotated source: sodium atom
annotated property: hasRelatedSynonym
annotated target: sodio
has db xref: ChemIDplus

Axiom
annotated source: sodium atom
annotated property: hasRelatedSynonym
annotated target: sodium
has db xref: ChEBI

sodium chloride
type: Class
subclass of: inorganic chloride
subclass of: inorganic sodium salt
IAO_0000115: An inorganic chloride salt having sodium(1+) as the counterion.

sodium molecular entity
type: Class
subclass of: alkali metal molecular entity
subclass of: Restriction
  on property: has part
  some values from: sodium atom
has related synonym: sodium compounds
has related synonym: sodium molecular entities

Axiom
annotated source: sodium molecular entity
annotated property: hasRelatedSynonym
annotated target: sodium compounds
has db xref: ChEBI

Axiom
annotated source: sodium molecular entity
annotated property: hasRelatedSynonym
annotated target: sodium molecular entities
has db xref: ChEBI

sodium salt
type: Class
subclass of: sodium molecular entity
subclass of: alkali metal salt
subclass of: Restriction
  on property: has part
  some values from: sodium(1+)
IAO_0000115: Any alkali metal salt having sodium(1+) as the cation.
has related synonym: Natriumsalz
has related synonym: Natriumsalze
has related synonym: sodium salts

Axiom
annotated source: sodium salt
annotated property: hasRelatedSynonym
annotated target: Natriumsalz
has db xref: ChEBI

Axiom
annotated source: sodium salt
annotated property: hasRelatedSynonym
annotated target: Natriumsalze
has db xref: ChEBI

Axiom
annotated source: sodium salt
annotated property: hasRelatedSynonym
annotated target: sodium salts
has db xref: ChEBI

micronutrient
type: Class
subclass of: nutrient
IAO_0000115: Any nutrient required in small quantities by organisms throughout their life in order to orchestrate a range of physiological functions.
has related synonym: micronutrients
has related synonym: trace elements

Axiom
annotated source: micronutrient
annotated property: hasRelatedSynonym
annotated target: micronutrients
has db xref: ChEBI

Axiom
annotated source: micronutrient
annotated property: hasRelatedSynonym
annotated target: trace elements
has db xref: ChEBI

carbon atom
type: Class
subclass of: nonmetal atom
subclass of: carbon group element atom
subclass of: Restriction
  on property: has role
  some values from: macronutrient
has exact synonym: carbon
has related synonym: 6C
has related synonym: C
has related synonym: Carbon
has related synonym: Kohlenstoff
has related synonym: carbon
has related synonym: carbone
has related synonym: carbonium
has related synonym: carbono

Axiom
annotated source: carbon atom
annotated property: hasExactSynonym
annotated target: carbon
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carbon atom
annotated property: hasRelatedSynonym
annotated target: 6C
has db xref: IUPAC

Axiom
annotated source: carbon atom
annotated property: hasRelatedSynonym
annotated target: C
has db xref: IUPAC

Axiom
annotated source: carbon atom
annotated property: hasRelatedSynonym
annotated target: C
has db xref: KEGG_COMPOUND

Axiom
annotated source: carbon atom
annotated property: hasRelatedSynonym
annotated target: Carbon
has db xref: KEGG_COMPOUND

Axiom
annotated source: carbon atom
annotated property: hasRelatedSynonym
annotated target: Kohlenstoff
has db xref: ChEBI

Axiom
annotated source: carbon atom
annotated property: hasRelatedSynonym
annotated target: carbon
has db xref: ChEBI

Axiom
annotated source: carbon atom
annotated property: hasRelatedSynonym
annotated target: carbone
has db xref: ChEBI

Axiom
annotated source: carbon atom
annotated property: hasRelatedSynonym
annotated target: carbonium
has db xref: ChEBI

Axiom
annotated source: carbon atom
annotated property: hasRelatedSynonym
annotated target: carbono
has db xref: ChEBI

sodium(1+)
type: Class
subclass of: monoatomic monocation
subclass of: alkali metal cation
subclass of: elemental sodium
subclass of: monovalent inorganic cation
subclass of: Restriction
  on property: has role
  some values from: cofactor
subclass of: Restriction
  on property: has role
  some values from: human metabolite
IAO_0000115: A monoatomic monocation obtained from sodium.
has exact synonym: sodium cation
has exact synonym: sodium(1+)
has exact synonym: sodium(1+) ion
has exact synonym: sodium(I) cation
has related synonym: Na(+)
has related synonym: Na+
has related synonym: SODIUM ION

Axiom
annotated source: sodium(1+)
annotated property: hasExactSynonym
annotated target: sodium cation
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: sodium(1+)
annotated property: hasExactSynonym
annotated target: sodium(1+)
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: sodium(1+)
annotated property: hasExactSynonym
annotated target: sodium(1+) ion
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: sodium(1+)
annotated property: hasExactSynonym
annotated target: sodium(I) cation
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: sodium(1+)
annotated property: hasRelatedSynonym
annotated target: Na(+)
has db xref: IUPAC

Axiom
annotated source: sodium(1+)
annotated property: hasRelatedSynonym
annotated target: Na(+)
has db xref: UniProt

Axiom
annotated source: sodium(1+)
annotated property: hasRelatedSynonym
annotated target: Na+
has db xref: KEGG_COMPOUND

Axiom
annotated source: sodium(1+)
annotated property: hasRelatedSynonym
annotated target: SODIUM ION
has db xref: PDBeChem

oxonium
type: Class
subclass of: oxygen hydride
subclass of: onium cation
subclass of: Restriction
  on property: is conjugate acid of
  some values from: water
has exact synonym: aquahydrogen(1+)
has exact synonym: oxidanium
has exact synonym: oxonium
has exact synonym: trihydridooxygen(1+)
has related synonym: H3O(+)
has related synonym: Hydronium cation
has related synonym: Hydronium ion
has related synonym: [OH3](+)

Axiom
annotated source: oxonium
annotated property: hasExactSynonym
annotated target: aquahydrogen(1+)
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: oxonium
annotated property: hasExactSynonym
annotated target: oxidanium
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: oxonium
annotated property: hasExactSynonym
annotated target: oxonium
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: oxonium
annotated property: hasExactSynonym
annotated target: trihydridooxygen(1+)
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: oxonium
annotated property: hasRelatedSynonym
annotated target: H3O(+)
has db xref: IUPAC

Axiom
annotated source: oxonium
annotated property: hasRelatedSynonym
annotated target: Hydronium cation
has db xref: NIST_Chemistry_WebBook

Axiom
annotated source: oxonium
annotated property: hasRelatedSynonym
annotated target: Hydronium ion
has db xref: ChemIDplus

Axiom
annotated source: oxonium
annotated property: hasRelatedSynonym
annotated target: [OH3](+)
has db xref: MolBase

diazynediium
type: Class
subclass of: nitrogen hydride
subclass of: Restriction
  on property: is conjugate acid of
  some values from: diazynium
has exact synonym: diazynediium
has related synonym: HNNH(2+)
has related synonym: [HNNH](2+)

Axiom
annotated source: diazynediium
annotated property: hasExactSynonym
annotated target: diazynediium
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: diazynediium
annotated property: hasRelatedSynonym
annotated target: HNNH(2+)
has db xref: IUPAC

Axiom
annotated source: diazynediium
annotated property: hasRelatedSynonym
annotated target: [HNNH](2+)
has db xref: ChEBI

diazynium
type: Class
subclass of: nitrogen hydride
subclass of: Restriction
  on property: is conjugate acid of
  some values from: dinitrogen
subclass of: Restriction
  on property: is conjugate base of
  some values from: diazynediium
has exact synonym: diazynium
has related synonym: HN2+
has related synonym: N#NH(+)

Axiom
annotated source: diazynium
annotated property: hasExactSynonym
annotated target: diazynium
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: diazynium
annotated property: hasRelatedSynonym
annotated target: HN2+
has db xref: NIST_Chemistry_WebBook

Axiom
annotated source: diazynium
annotated property: hasRelatedSynonym
annotated target: N#NH(+)
has db xref: IUPAC

application
type: Class
subclass of: role
IAO_0000115: Intended use of the molecular entity or part thereof by humans.

fundamental particle
type: Class
subclass of: subatomic particle
IAO_0000115: A particle not known to have substructure.
has exact synonym: elementary particle
has related synonym: elementary particles

Axiom
annotated source: fundamental particle
annotated property: hasExactSynonym
annotated target: elementary particle
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: fundamental particle
annotated property: hasRelatedSynonym
annotated target: elementary particles
has db xref: ChEBI

monoatomic entity
type: Class
subclass of: elemental molecular entity
IAO_0000115: A monoatomic entity is a molecular entity consisting of a single atom.
has related synonym: atomic entity
has related synonym: monoatomic entities

Axiom
annotated source: monoatomic entity
annotated property: hasRelatedSynonym
annotated target: atomic entity
has db xref: ChEBI

Axiom
annotated source: monoatomic entity
annotated property: hasRelatedSynonym
annotated target: monoatomic entities
has db xref: ChEBI

inorganic hydride
type: Class
subclass of: inorganic molecular entity
subclass of: hydrides
has related synonym: inorganic hydrides

Axiom
annotated source: inorganic hydride
annotated property: hasRelatedSynonym
annotated target: inorganic hydrides
has db xref: ChEBI

inorganic group
type: Class
subclass of: group
IAO_0000115: Any substituent group which does not contain carbon.
has related synonym: inorganic groups

Axiom
annotated source: inorganic group
annotated property: hasRelatedSynonym
annotated target: inorganic groups
has db xref: ChEBI

atom
type: Class
subclass of: chemical entity
subclass of: Restriction
  on property: has part
  some values from: electron
subclass of: Restriction
  on property: has part
  some values from: atomic nucleus
IAO_0000115: A chemical entity constituting the smallest component of an element having the chemical properties of the element.
has exact synonym: atom
has related synonym: atome
has related synonym: atomo
has related synonym: atoms
has related synonym: atomus
has related synonym: element
has related synonym: elements

Axiom
annotated source: atom
annotated property: hasExactSynonym
annotated target: atom
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: atom
annotated property: hasRelatedSynonym
annotated target: atome
has db xref: IUPAC

Axiom
annotated source: atom
annotated property: hasRelatedSynonym
annotated target: atomo
has db xref: IUPAC

Axiom
annotated source: atom
annotated property: hasRelatedSynonym
annotated target: atoms
has db xref: ChEBI

Axiom
annotated source: atom
annotated property: hasRelatedSynonym
annotated target: atomus
has db xref: ChEBI

Axiom
annotated source: atom
annotated property: hasRelatedSynonym
annotated target: element
has db xref: ChEBI

Axiom
annotated source: atom
annotated property: hasRelatedSynonym
annotated target: elements
has db xref: ChEBI

atomic nucleus
type: Class
subclass of: nuclear particle
subclass of: Restriction
  on property: has part
  some values from: nucleon
IAO_0000115: A nucleus is the positively charged central portion of an atom, excluding the orbital electrons.
has exact synonym: nucleus
has related synonym: Atomkern
has related synonym: Kern
has related synonym: noyau
has related synonym: noyau atomique
has related synonym: nuclei
has related synonym: nucleo
has related synonym: nucleo atomico
has related synonym: nucleus atomi

Axiom
annotated source: atomic nucleus
annotated property: hasExactSynonym
annotated target: nucleus
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: atomic nucleus
annotated property: hasRelatedSynonym
annotated target: Atomkern
has db xref: ChEBI

Axiom
annotated source: atomic nucleus
annotated property: hasRelatedSynonym
annotated target: Kern
has db xref: ChEBI

Axiom
annotated source: atomic nucleus
annotated property: hasRelatedSynonym
annotated target: noyau
has db xref: IUPAC

Axiom
annotated source: atomic nucleus
annotated property: hasRelatedSynonym
annotated target: noyau atomique
has db xref: ChEBI

Axiom
annotated source: atomic nucleus
annotated property: hasRelatedSynonym
annotated target: nuclei
has db xref: ChEBI

Axiom
annotated source: atomic nucleus
annotated property: hasRelatedSynonym
annotated target: nucleo
has db xref: IUPAC

Axiom
annotated source: atomic nucleus
annotated property: hasRelatedSynonym
annotated target: nucleo atomico
has db xref: ChEBI

Axiom
annotated source: atomic nucleus
annotated property: hasRelatedSynonym
annotated target: nucleus atomi
has db xref: ChEBI

nucleon
type: Class
subclass of: baryon
subclass of: nuclear particle
IAO_0000115: Heavy nuclear particle: proton or neutron.
has exact synonym: nucleon
has related synonym: Nukleon
has related synonym: Nukleonen
has related synonym: nucleons

Axiom
annotated source: nucleon
annotated property: hasExactSynonym
annotated target: nucleon
has db xref: IUPAC

Axiom
annotated source: nucleon
annotated property: hasExactSynonym
annotated target: nucleon
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: nucleon
annotated property: hasRelatedSynonym
annotated target: Nukleon
has db xref: ChEBI

Axiom
annotated source: nucleon
annotated property: hasRelatedSynonym
annotated target: Nukleonen
has db xref: ChEBI

Axiom
annotated source: nucleon
annotated property: hasRelatedSynonym
annotated target: nucleons
has db xref: ChEBI

elemental molecular entity
type: Class
subclass of: molecular entity
IAO_0000115: A molecular entity all atoms of which have the same atomic number.
has related synonym: homoatomic entity
has related synonym: homoatomic molecular entities
has related synonym: homoatomic molecular entity

Axiom
annotated source: elemental molecular entity
annotated property: hasRelatedSynonym
annotated target: homoatomic entity
has db xref: ChEBI

Axiom
annotated source: elemental molecular entity
annotated property: hasRelatedSynonym
annotated target: homoatomic molecular entities
has db xref: ChEBI

Axiom
annotated source: elemental molecular entity
annotated property: hasRelatedSynonym
annotated target: homoatomic molecular entity
has db xref: ChEBI

elemental oxygen
type: Class
subclass of: inorganic molecular entity
subclass of: oxygen molecular entity
subclass of: elemental molecular entity
subclass of: food additive

diatomic oxygen
type: Class
subclass of: elemental oxygen

diatomic nitrogen
type: Class
subclass of: elemental nitrogen

elemental nitrogen
type: Class
subclass of: elemental pnictogen
subclass of: nitrogen molecular entity

nutrient
type: Class
subclass of: food component
IAO_0000115: A nutrient is a food component that an organism uses to survive and grow.
has related synonym: nutrients

Axiom
annotated source: nutrient
annotated property: hasRelatedSynonym
annotated target: nutrients
has db xref: ChEBI

heteroorganic entity
type: Class
subclass of: organic molecular entity
IAO_0000115: A heteroorganic entity is an organic molecular entity in which carbon atoms or organic groups are bonded directly to one or more heteroatoms.
has related synonym: heteroorganic entities
has related synonym: organoelement compounds

Axiom
annotated source: heteroorganic entity
annotated property: hasRelatedSynonym
annotated target: heteroorganic entities
has db xref: ChEBI

Axiom
annotated source: heteroorganic entity
annotated property: hasRelatedSynonym
annotated target: organoelement compounds
has db xref: ChEBI

food
type: Class
subclass of: physiological role
IAO_0000115: Any material that can be ingested by an organism.
IAO_0000412: chebi.owl

alkali metal molecular entity
type: Class
subclass of: s-block molecular entity
subclass of: Restriction
  on property: has part
  some values from: alkali metal atom
IAO_0000115: A molecular entity containing one or more atoms of an alkali metal.
has related synonym: alkali metal molecular entities

Axiom
annotated source: alkali metal molecular entity
annotated property: hasRelatedSynonym
annotated target: alkali metal molecular entities
has db xref: ChEBI

pnictogen
type: Class
subclass of: p-block element atom
IAO_0000115: Any p-block element atom that is in group 15 of the periodic table: nitrogen, phosphorus, arsenic, antimony and bismuth.
has exact synonym: pnictogens
has related synonym: group 15 elements
has related synonym: group V elements
has related synonym: nitrogenoideos
has related synonym: nitrogenoides
has related synonym: pnictogene
has related synonym: pnictogenes

Axiom
annotated source: pnictogen
annotated property: hasExactSynonym
annotated target: pnictogens
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: pnictogen
annotated property: hasRelatedSynonym
annotated target: group 15 elements
has db xref: ChEBI

Axiom
annotated source: pnictogen
annotated property: hasRelatedSynonym
annotated target: group V elements
has db xref: ChEBI

Axiom
annotated source: pnictogen
annotated property: hasRelatedSynonym
annotated target: nitrogenoideos
has db xref: ChEBI

Axiom
annotated source: pnictogen
annotated property: hasRelatedSynonym
annotated target: nitrogenoides
has db xref: ChEBI

Axiom
annotated source: pnictogen
annotated property: hasRelatedSynonym
annotated target: pnictogene
has db xref: ChEBI

Axiom
annotated source: pnictogen
annotated property: hasRelatedSynonym
annotated target: pnictogenes
has db xref: ChEBI

pnictogen molecular entity
type: Class
subclass of: p-block molecular entity
subclass of: Restriction
  on property: has part
  some values from: pnictogen
IAO_0000115: A p-block molecular entity containing any pnictogen.
has exact synonym: pnictogen molecular entity
has related synonym: pnictogen molecular entities

Axiom
annotated source: pnictogen molecular entity
annotated property: hasExactSynonym
annotated target: pnictogen molecular entity
has db xref: ChEBI

Axiom
annotated source: pnictogen molecular entity
annotated property: hasRelatedSynonym
annotated target: pnictogen molecular entities
has db xref: ChEBI

chalcogen
type: Class
subclass of: p-block element atom
IAO_0000115: Any p-block element belonging to the group 16 family of the periodic table.
has exact synonym: chalcogen
has exact synonym: chalcogens
has related synonym: Chalkogen
has related synonym: Chalkogene
has related synonym: anfigeno
has related synonym: anfigenos
has related synonym: calcogeno
has related synonym: calcogenos
has related synonym: chalcogene
has related synonym: chalcogenes
has related synonym: group 16 elements
has related synonym: group VI elements

Axiom
annotated source: chalcogen
annotated property: hasExactSynonym
annotated target: chalcogen
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: chalcogen
annotated property: hasExactSynonym
annotated target: chalcogens
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: chalcogen
annotated property: hasRelatedSynonym
annotated target: Chalkogen
has db xref: ChEBI

Axiom
annotated source: chalcogen
annotated property: hasRelatedSynonym
annotated target: Chalkogene
has db xref: ChEBI

Axiom
annotated source: chalcogen
annotated property: hasRelatedSynonym
annotated target: anfigeno
has db xref: ChEBI

Axiom
annotated source: chalcogen
annotated property: hasRelatedSynonym
annotated target: anfigenos
has db xref: ChEBI

Axiom
annotated source: chalcogen
annotated property: hasRelatedSynonym
annotated target: calcogeno
has db xref: ChEBI

Axiom
annotated source: chalcogen
annotated property: hasRelatedSynonym
annotated target: calcogenos
has db xref: ChEBI

Axiom
annotated source: chalcogen
annotated property: hasRelatedSynonym
annotated target: chalcogene
has db xref: ChEBI

Axiom
annotated source: chalcogen
annotated property: hasRelatedSynonym
annotated target: chalcogenes
has db xref: ChEBI

Axiom
annotated source: chalcogen
annotated property: hasRelatedSynonym
annotated target: group 16 elements
has db xref: ChEBI

Axiom
annotated source: chalcogen
annotated property: hasRelatedSynonym
annotated target: group VI elements
has db xref: ChEBI

chalcogen molecular entity
type: Class
subclass of: p-block molecular entity
subclass of: Restriction
  on property: has part
  some values from: chalcogen
IAO_0000115: Any p-block molecular entity containing a chalcogen.
has exact synonym: chalcogen molecular entity
has related synonym: chalcogen compounds
has related synonym: chalcogen molecular entities

Axiom
annotated source: chalcogen molecular entity
annotated property: hasExactSynonym
annotated target: chalcogen molecular entity
has db xref: ChEBI

Axiom
annotated source: chalcogen molecular entity
annotated property: hasRelatedSynonym
annotated target: chalcogen compounds
has db xref: ChEBI

Axiom
annotated source: chalcogen molecular entity
annotated property: hasRelatedSynonym
annotated target: chalcogen molecular entities
has db xref: ChEBI

carbon group element atom
type: Class
subclass of: p-block element atom
has exact synonym: group 14 elements
has related synonym: carbon group element
has related synonym: carbon group elements
has related synonym: carbonoides
has related synonym: cristallogene
has related synonym: cristallogenes
has related synonym: group IV elements

Axiom
annotated source: carbon group element atom
annotated property: hasExactSynonym
annotated target: group 14 elements
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carbon group element atom
annotated property: hasRelatedSynonym
annotated target: carbon group element
has db xref: ChEBI

Axiom
annotated source: carbon group element atom
annotated property: hasRelatedSynonym
annotated target: carbon group elements
has db xref: ChEBI

Axiom
annotated source: carbon group element atom
annotated property: hasRelatedSynonym
annotated target: carbonoides
has db xref: ChEBI

Axiom
annotated source: carbon group element atom
annotated property: hasRelatedSynonym
annotated target: cristallogene
has db xref: ChEBI

Axiom
annotated source: carbon group element atom
annotated property: hasRelatedSynonym
annotated target: cristallogenes
has db xref: ChEBI

Axiom
annotated source: carbon group element atom
annotated property: hasRelatedSynonym
annotated target: group IV elements
has db xref: ChEBI

main group element atom
type: Class
subclass of: atom
IAO_0000115: An atom belonging to one of the main groups (found in the s- and p- blocks) of the periodic table.
has exact synonym: main group elements
has related synonym: Hauptgruppenelement
has related synonym: Hauptgruppenelemente
has related synonym: main group element

Axiom
annotated source: main group element atom
annotated property: hasExactSynonym
annotated target: main group elements
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: main group element atom
annotated property: hasRelatedSynonym
annotated target: Hauptgruppenelement
has db xref: ChEBI

Axiom
annotated source: main group element atom
annotated property: hasRelatedSynonym
annotated target: Hauptgruppenelemente
has db xref: ChEBI

Axiom
annotated source: main group element atom
annotated property: hasRelatedSynonym
annotated target: main group element
has db xref: ChEBI

hydracid
type: Class
subclass of: hydrogen molecular entity
subclass of: Restriction
  on property: has role
  some values from: Bronsted acid
IAO_0000115: A hydracid is a compound which contains hydrogen that is not bound to oxygen, and which produces a conjugate base by loss of positive hydrogen ion(s) (hydrons).
has exact synonym: hydracid
has related synonym: hydracids

Axiom
annotated source: hydracid
annotated property: hasExactSynonym
annotated target: hydracid
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydracid
annotated property: hasRelatedSynonym
annotated target: hydracids
has db xref: ChEBI

monoatomic monoanion
type: Class
subclass of: monoatomic anion
subclass of: monoanion
has related synonym: monoatomic monoanions

Axiom
annotated source: monoatomic monoanion
annotated property: hasRelatedSynonym
annotated target: monoatomic monoanions
has db xref: ChEBI

elemental chlorine
type: Class
subclass of: chlorine molecular entity
subclass of: elemental halogen

monoatomic chlorine
type: Class
subclass of: elemental chlorine
subclass of: monoatomic halogen
has related synonym: atomic chlorine

Axiom
annotated source: monoatomic chlorine
annotated property: hasRelatedSynonym
annotated target: atomic chlorine
has db xref: ChEBI

monoatomic halogen
type: Class
subclass of: monoatomic entity
has related synonym: monoatomic halogens

Axiom
annotated source: monoatomic halogen
annotated property: hasRelatedSynonym
annotated target: monoatomic halogens
has db xref: ChEBI

elemental halogen
type: Class
subclass of: elemental molecular entity
has exact synonym: elemental halogen
has related synonym: elemental halogens

Axiom
annotated source: elemental halogen
annotated property: hasExactSynonym
annotated target: elemental halogen
has db xref: ChEBI

Axiom
annotated source: elemental halogen
annotated property: hasRelatedSynonym
annotated target: elemental halogens
has db xref: ChEBI

elemental pnictogen
type: Class
subclass of: inorganic molecular entity
subclass of: elemental molecular entity
subclass of: pnictogen molecular entity
has exact synonym: elemental pnictogen
has related synonym: elemental pnictogens

Axiom
annotated source: elemental pnictogen
annotated property: hasExactSynonym
annotated target: elemental pnictogen
has db xref: ChEBI

Axiom
annotated source: elemental pnictogen
annotated property: hasRelatedSynonym
annotated target: elemental pnictogens
has db xref: ChEBI

alkali metal cation
type: Class
subclass of: metal cation
has related synonym: alkali metal cations

Axiom
annotated source: alkali metal cation
annotated property: hasRelatedSynonym
annotated target: alkali metal cations
has db xref: ChEBI

metal atom
type: Class
subclass of: atom
IAO_0000115: An atom of an element that exhibits typical metallic properties, being typically shiny, with high electrical and thermal conductivity.
has related synonym: elemental metal
has related synonym: elemental metals
has related synonym: metal element
has related synonym: metal elements
has related synonym: metals

Axiom
annotated source: metal atom
annotated property: hasRelatedSynonym
annotated target: elemental metal
has db xref: ChEBI

Axiom
annotated source: metal atom
annotated property: hasRelatedSynonym
annotated target: elemental metals
has db xref: ChEBI

Axiom
annotated source: metal atom
annotated property: hasRelatedSynonym
annotated target: metal element
has db xref: ChEBI

Axiom
annotated source: metal atom
annotated property: hasRelatedSynonym
annotated target: metal elements
has db xref: ChEBI

Axiom
annotated source: metal atom
annotated property: hasRelatedSynonym
annotated target: metals
has db xref: ChEBI

s-block element atom
type: Class
subclass of: atom
has related synonym: s-block element
has related synonym: s-block elements

Axiom
annotated source: s-block element atom
annotated property: hasRelatedSynonym
annotated target: s-block element
has db xref: ChEBI

Axiom
annotated source: s-block element atom
annotated property: hasRelatedSynonym
annotated target: s-block elements
has db xref: ChEBI

p-block element atom
type: Class
subclass of: main group element atom
IAO_0000115: Any main group element atom belonging to the p-block of the periodic table.
has related synonym: p-block element
has related synonym: p-block elements

Axiom
annotated source: p-block element atom
annotated property: hasRelatedSynonym
annotated target: p-block element
has db xref: ChEBI

Axiom
annotated source: p-block element atom
annotated property: hasRelatedSynonym
annotated target: p-block elements
has db xref: ChEBI

main group molecular entity
type: Class
subclass of: molecular entity
subclass of: Restriction
  on property: has part
  some values from: main group element atom
IAO_0000115: A molecular entity containing one or more atoms from any of groups 1, 2, 13, 14, 15, 16, 17, and 18 of the periodic table.
has related synonym: main group compounds
has related synonym: main group molecular entities

Axiom
annotated source: main group molecular entity
annotated property: hasRelatedSynonym
annotated target: main group compounds
has db xref: ChEBI

Axiom
annotated source: main group molecular entity
annotated property: hasRelatedSynonym
annotated target: main group molecular entities
has db xref: ChEBI

carbon group molecular entity
type: Class
subclass of: p-block molecular entity
subclass of: Restriction
  on property: has part
  some values from: carbon group element atom
has exact synonym: carbon group molecular entity
has related synonym: carbon group molecular entities

Axiom
annotated source: carbon group molecular entity
annotated property: hasExactSynonym
annotated target: carbon group molecular entity
has db xref: ChEBI

Axiom
annotated source: carbon group molecular entity
annotated property: hasRelatedSynonym
annotated target: carbon group molecular entities
has db xref: ChEBI

noble gas molecular entity
type: Class
subclass of: main group molecular entity
IAO_0000115: A main group molecular entity containing one or more atoms of any noble gas.

hydrogen molecular entity
type: Class
subclass of: s-block molecular entity
subclass of: Restriction
  on property: has part
  some values from: hydrogen atom
has related synonym: hydrogen compounds
has related synonym: hydrogen molecular entities

Axiom
annotated source: hydrogen molecular entity
annotated property: hasRelatedSynonym
annotated target: hydrogen compounds
has db xref: ChEBI

Axiom
annotated source: hydrogen molecular entity
annotated property: hasRelatedSynonym
annotated target: hydrogen molecular entities
has db xref: ChEBI

s-block molecular entity
type: Class
subclass of: main group molecular entity
subclass of: Restriction
  on property: has part
  some values from: s-block element atom
IAO_0000115: An s-block molecular entity is a molecular entity containing one or more atoms of an s-block element.
has exact synonym: s-block molecular entity
has related synonym: s-block compounds
has related synonym: s-block molecular entities

Axiom
annotated source: s-block molecular entity
annotated property: hasExactSynonym
annotated target: s-block molecular entity
has db xref: ChEBI

Axiom
annotated source: s-block molecular entity
annotated property: hasRelatedSynonym
annotated target: s-block compounds
has db xref: ChEBI

Axiom
annotated source: s-block molecular entity
annotated property: hasRelatedSynonym
annotated target: s-block molecular entities
has db xref: ChEBI

p-block molecular entity
type: Class
subclass of: main group molecular entity
subclass of: Restriction
  on property: has part
  some values from: p-block element atom
IAO_0000115: A main group molecular entity that contains one or more atoms of a p-block element.
has related synonym: p-block compounds
has related synonym: p-block molecular entities
has related synonym: p-block molecular entitiy

Axiom
annotated source: p-block molecular entity
annotated property: hasRelatedSynonym
annotated target: p-block compounds
has db xref: ChEBI

Axiom
annotated source: p-block molecular entity
annotated property: hasRelatedSynonym
annotated target: p-block molecular entities
has db xref: ChEBI

Axiom
annotated source: p-block molecular entity
annotated property: hasRelatedSynonym
annotated target: p-block molecular entitiy
has db xref: ChEBI

helium molecular entity
type: Class
subclass of: noble gas molecular entity
subclass of: s-block molecular entity

hydrides
type: Class
subclass of: hydrogen molecular entity
subclass of: heteroatomic molecular entity
IAO_0000115: Hydrides are chemical compounds of hydrogen with other chemical elements.

oxygen hydride
type: Class
subclass of: chalcogen hydride
has exact synonym: oxygen hydride
has related synonym: hydrides of oxygen
has related synonym: oxygen hydrides

Axiom
annotated source: oxygen hydride
annotated property: hasExactSynonym
annotated target: oxygen hydride
has db xref: ChEBI

Axiom
annotated source: oxygen hydride
annotated property: hasRelatedSynonym
annotated target: hydrides of oxygen
has db xref: ChEBI

Axiom
annotated source: oxygen hydride
annotated property: hasRelatedSynonym
annotated target: oxygen hydrides
has db xref: ChEBI

biomacromolecule
type: Class
subclass of: macromolecule
subclass of: organic molecular entity
IAO_0000115: A macromolecule formed by a living organism.

macromolecule
type: Class
subclass of: polyatomic entity
IAO_0000115: A macromolecule is a molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.

macronutrient
type: Class
subclass of: nutrient

halide salt
type: Class
subclass of: salt
subclass of: halide
subclass of: Restriction
  on property: has part
  some values from: halide anion
has related synonym: halide salts
has related synonym: halides

Axiom
annotated source: halide salt
annotated property: hasRelatedSynonym
annotated target: halide salts
has db xref: ChEBI

Axiom
annotated source: halide salt
annotated property: hasRelatedSynonym
annotated target: halides
has db xref: ChEBI

nitrogen hydride
type: Class
subclass of: pnictogen hydride
subclass of: nitrogen molecular entity
has related synonym: nitrogen hydrides

Axiom
annotated source: nitrogen hydride
annotated property: hasRelatedSynonym
annotated target: nitrogen hydrides
has db xref: ChEBI

alkali metal salt
type: Class
subclass of: salt
subclass of: alkali metal molecular entity
has related synonym: alkali metal salts

Axiom
annotated source: alkali metal salt
annotated property: hasRelatedSynonym
annotated target: alkali metal salts
has db xref: ChEBI

pnictogen hydride
type: Class
subclass of: inorganic hydride
subclass of: pnictogen molecular entity
has exact synonym: pnictogen hydride
has related synonym: pnictogen hydrides

Axiom
annotated source: pnictogen hydride
annotated property: hasExactSynonym
annotated target: pnictogen hydride
has db xref: ChEBI

Axiom
annotated source: pnictogen hydride
annotated property: hasRelatedSynonym
annotated target: pnictogen hydrides
has db xref: ChEBI

inorganic chloride
type: Class
subclass of: chloride salt
subclass of: inorganic salt
has related synonym: inorganic chloride salt
has related synonym: inorganic chloride salts
has related synonym: inorganic chlorides

Axiom
annotated source: inorganic chloride
annotated property: hasRelatedSynonym
annotated target: inorganic chloride salt
has db xref: ChEBI

Axiom
annotated source: inorganic chloride
annotated property: hasRelatedSynonym
annotated target: inorganic chloride salts
has db xref: ChEBI

Axiom
annotated source: inorganic chloride
annotated property: hasRelatedSynonym
annotated target: inorganic chlorides
has db xref: ChEBI

lepton
type: Class
subclass of: fundamental particle
subclass of: fermion
IAO_0000115: Lepton is a fermion that does not experience the strong force (strong interaction). The term is derived from the Greek lambdaepsilonpitauomicronsigma (small, thin).
has related synonym: leptons

Axiom
annotated source: lepton
annotated property: hasRelatedSynonym
annotated target: leptons
has db xref: ChEBI

baryon
type: Class
subclass of: fermion
subclass of: hadron
IAO_0000115: Baryon is a fermion that does experience the strong force (strong interaction). The term is derived from the Greek betaalpharhoupsilonsigma (heavy).
has related synonym: baryons

Axiom
annotated source: baryon
annotated property: hasRelatedSynonym
annotated target: baryons
has db xref: ChEBI

fermion
type: Class
subclass of: subatomic particle
IAO_0000115: Particle of half-integer spin quantum number following Fermi-Dirac statistics. Fermions are named after Enrico Fermi.
has exact synonym: fermion
has related synonym: fermions

Axiom
annotated source: fermion
annotated property: hasExactSynonym
annotated target: fermion
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: fermion
annotated property: hasRelatedSynonym
annotated target: fermions
has db xref: ChEBI

subatomic particle
type: Class
subclass of: material entity
IAO_0000115: A particle smaller than an atom.
has related synonym: subatomic particles

Axiom
annotated source: subatomic particle
annotated property: hasRelatedSynonym
annotated target: subatomic particles
has db xref: ChEBI

composite particle
type: Class
subclass of: subatomic particle
IAO_0000115: A subatomic particle known to have substructure (i.e. consisting of smaller particles).
has related synonym: composite particles

Axiom
annotated source: composite particle
annotated property: hasRelatedSynonym
annotated target: composite particles
has db xref: ChEBI

hadron
type: Class
subclass of: composite particle
IAO_0000115: Hadron is a subatomic particle which experiences the strong force.
has related synonym: hadrons

Axiom
annotated source: hadron
annotated property: hasRelatedSynonym
annotated target: hadrons
has db xref: ChEBI

nuclear particle
type: Class
subclass of: subatomic particle
IAO_0000115: A nucleus or any of its constituents in any of their energy states.
has exact synonym: nuclear particle

Axiom
annotated source: nuclear particle
annotated property: hasExactSynonym
annotated target: nuclear particle
has db xref: IUPAC
has synonym type: IUPAC NAME

polyatomic entity
type: Class
subclass of: molecular entity
subclass of: Restriction
  on property: has part
  some values from: group
IAO_0000115: Any molecular entity consisting of more than one atom.
has related synonym: polyatomic entities

Axiom
annotated source: polyatomic entity
annotated property: hasRelatedSynonym
annotated target: polyatomic entities
has db xref: ChEBI

monoanion
type: Class
subclass of: anion
has related synonym: monoanions

Axiom
annotated source: monoanion
annotated property: hasRelatedSynonym
annotated target: monoanions
has db xref: ChEBI

chalcogen hydride
type: Class
subclass of: inorganic hydride
subclass of: chalcogen molecular entity
has exact synonym: chalcogen hydride
has related synonym: chalcogen hydrides

Axiom
annotated source: chalcogen hydride
annotated property: hasExactSynonym
annotated target: chalcogen hydride
has db xref: ChEBI

Axiom
annotated source: chalcogen hydride
annotated property: hasRelatedSynonym
annotated target: chalcogen hydrides
has db xref: ChEBI

argon molecular entity
type: Class
subclass of: noble gas molecular entity
subclass of: food additive

inorganic ion
type: Class
subclass of: inorganic molecular entity
subclass of: ion
has related synonym: inorganic ions

Axiom
annotated source: inorganic ion
annotated property: hasRelatedSynonym
annotated target: inorganic ions
has db xref: ChEBI

inorganic cation
type: Class
subclass of: inorganic ion
subclass of: cation
has related synonym: inorganic cations

Axiom
annotated source: inorganic cation
annotated property: hasRelatedSynonym
annotated target: inorganic cations
has db xref: ChEBI

cation
type: Class
subclass of: ion
IAO_0000115: A monoatomic or polyatomic species having one or more elementary charges of the proton.
has exact synonym: Cation
has exact synonym: cation
has related synonym: Kation
has related synonym: Kationen
has related synonym: cationes
has related synonym: cations

Axiom
annotated source: cation
annotated property: hasExactSynonym
annotated target: Cation
has db xref: KEGG_COMPOUND

Axiom
annotated source: cation
annotated property: hasExactSynonym
annotated target: cation
has db xref: ChEBI

Axiom
annotated source: cation
annotated property: hasExactSynonym
annotated target: cation
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: cation
annotated property: hasRelatedSynonym
annotated target: Kation
has db xref: ChEBI

Axiom
annotated source: cation
annotated property: hasRelatedSynonym
annotated target: Kationen
has db xref: ChEBI

Axiom
annotated source: cation
annotated property: hasRelatedSynonym
annotated target: cationes
has db xref: ChEBI

Axiom
annotated source: cation
annotated property: hasRelatedSynonym
annotated target: cations
has db xref: ChEBI

organochalcogen compound
type: Class
subclass of: heteroorganic entity
subclass of: chalcogen molecular entity
IAO_0000115: An organochalcogen compound is a compound containing at least one carbon-chalcogen bond.
has exact synonym: organochalcogen compound
has related synonym: organochalcogen compounds

Axiom
annotated source: organochalcogen compound
annotated property: hasExactSynonym
annotated target: organochalcogen compound
has db xref: ChEBI

Axiom
annotated source: organochalcogen compound
annotated property: hasRelatedSynonym
annotated target: organochalcogen compounds
has db xref: ChEBI

organooxygen compound
type: Class
subclass of: oxygen molecular entity
subclass of: organochalcogen compound
IAO_0000115: An organochalcogen compound containing at least one carbon-oxygen bond.
has exact synonym: organooxygen compound
has related synonym: organooxygen compounds

Axiom
annotated source: organooxygen compound
annotated property: hasExactSynonym
annotated target: organooxygen compound
has db xref: ChEBI

Axiom
annotated source: organooxygen compound
annotated property: hasRelatedSynonym
annotated target: organooxygen compounds
has db xref: ChEBI

mononuclear parent hydride
type: Class
subclass of: hydrides
has exact synonym: mononuclear parent hydrides
has related synonym: mononuclear hydride
has related synonym: mononuclear hydrides

Axiom
annotated source: mononuclear parent hydride
annotated property: hasExactSynonym
annotated target: mononuclear parent hydrides
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: mononuclear parent hydride
annotated property: hasRelatedSynonym
annotated target: mononuclear hydride
has db xref: ChEBI

Axiom
annotated source: mononuclear parent hydride
annotated property: hasRelatedSynonym
annotated target: mononuclear hydrides
has db xref: IUPAC

elemental sodium
type: Class
subclass of: sodium molecular entity

acid
type: Class
subclass of: chemical role
IAO_0000115: An acid is a molecular entity capable of donating a hydron (Bronsted acid) or capable of forming a covalent bond with an electron pair (Lewis acid).
has exact synonym: Acid
has exact synonym: acid
has related synonym: Saeure
has related synonym: Saeuren
has related synonym: acide
has related synonym: acido
has related synonym: acids

Axiom
annotated source: acid
annotated property: hasExactSynonym
annotated target: Acid
has db xref: KEGG_COMPOUND

Axiom
annotated source: acid
annotated property: hasExactSynonym
annotated target: acid
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: acid
annotated property: hasRelatedSynonym
annotated target: Saeure
has db xref: ChEBI

Axiom
annotated source: acid
annotated property: hasRelatedSynonym
annotated target: Saeuren
has db xref: ChEBI

Axiom
annotated source: acid
annotated property: hasRelatedSynonym
annotated target: acide
has db xref: IUPAC

Axiom
annotated source: acid
annotated property: hasRelatedSynonym
annotated target: acido
has db xref: ChEBI

Axiom
annotated source: acid
annotated property: hasRelatedSynonym
annotated target: acids
has db xref: ChEBI

heteroatomic molecular entity
type: Class
subclass of: polyatomic entity
IAO_0000115: A molecular entity consisting of two or more chemical elements.
has related synonym: chemical compound
has related synonym: heteroatomic molecular entities

Axiom
annotated source: heteroatomic molecular entity
annotated property: hasRelatedSynonym
annotated target: chemical compound
has db xref: ChEBI

Axiom
annotated source: heteroatomic molecular entity
annotated property: hasRelatedSynonym
annotated target: heteroatomic molecular entities
has db xref: ChEBI

halide
type: Class
subclass of: halogen molecular entity
subclass of: heteroatomic molecular entity
IAO_0000115: Any heteroatomic molecular entity that is a chemical compound of halogen with other chemical elements.
has related synonym: halides

Axiom
annotated source: halide
annotated property: hasRelatedSynonym
annotated target: halides
has db xref: ChEBI

inorganic sodium salt
type: Class
subclass of: inorganic salt
subclass of: sodium salt
has related synonym: inorganic sodium salts

Axiom
annotated source: inorganic sodium salt
annotated property: hasRelatedSynonym
annotated target: inorganic sodium salts
has db xref: ChEBI

Bronsted acid
type: Class
subclass of: donor
subclass of: acid
IAO_0000115: A molecular entity capable of donating a hydron to an acceptor (Bronsted base).
has exact synonym: Bronsted acid
has related synonym: Bronsted-Saeure
has related synonym: acide de Bronsted
has related synonym: donneur d'hydron
has related synonym: hydron donor

Axiom
annotated source: Bronsted acid
annotated property: hasExactSynonym
annotated target: Bronsted acid
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: Bronsted acid
annotated property: hasRelatedSynonym
annotated target: Bronsted-Saeure
has db xref: ChEBI

Axiom
annotated source: Bronsted acid
annotated property: hasRelatedSynonym
annotated target: acide de Bronsted
has db xref: IUPAC

Axiom
annotated source: Bronsted acid
annotated property: hasRelatedSynonym
annotated target: donneur d'hydron
has db xref: IUPAC

Axiom
annotated source: Bronsted acid
annotated property: hasRelatedSynonym
annotated target: hydron donor
has db xref: IUPAC

Bronsted base
type: Class
subclass of: acceptor
subclass of: base
IAO_0000115: A molecular entity capable of accepting a hydron from a donor (Bronsted acid).
has exact synonym: Bronsted base
has related synonym: Bronsted-Base
has related synonym: accepteur d'hydron
has related synonym: base de Bronsted
has related synonym: hydron acceptor

Axiom
annotated source: Bronsted base
annotated property: hasExactSynonym
annotated target: Bronsted base
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: Bronsted base
annotated property: hasRelatedSynonym
annotated target: Bronsted-Base
has db xref: ChEBI

Axiom
annotated source: Bronsted base
annotated property: hasRelatedSynonym
annotated target: accepteur d'hydron
has db xref: IUPAC

Axiom
annotated source: Bronsted base
annotated property: hasRelatedSynonym
annotated target: base de Bronsted
has db xref: IUPAC

Axiom
annotated source: Bronsted base
annotated property: hasRelatedSynonym
annotated target: hydron acceptor
has db xref: IUPAC

hydroxy group
type: Class
subclass of: inorganic group
has exact synonym: HYDROXY GROUP
has exact synonym: hydroxy
has exact synonym: hydroxy group
has related synonym: -OH
has related synonym: hydroxyl
has related synonym: hydroxyl group

Axiom
annotated source: hydroxy group
annotated property: hasExactSynonym
annotated target: HYDROXY GROUP
has db xref: PDBeChem

Axiom
annotated source: hydroxy group
annotated property: hasExactSynonym
annotated target: hydroxy
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydroxy group
annotated property: hasExactSynonym
annotated target: hydroxy group
has db xref: UniProt

Axiom
annotated source: hydroxy group
annotated property: hasRelatedSynonym
annotated target: -OH
has db xref: IUPAC

Axiom
annotated source: hydroxy group
annotated property: hasRelatedSynonym
annotated target: hydroxyl
has db xref: ChEBI

Axiom
annotated source: hydroxy group
annotated property: hasRelatedSynonym
annotated target: hydroxyl group
has db xref: ChEBI

mineral
type: Class
subclass of: chemical substance
IAO_0000115: In general, a mineral is a chemical substance that is normally crystalline formed and has been formed as a result of geological processes. The term also includes metamict substances (naturally occurring, formerly crystalline substances whose crystallinity has been destroyed by ionising radiation) and can include naturally occurring amorphous substances that have never been crystalline ('mineraloids') such as georgite and calciouranoite as well as substances formed by the action of geological processes on bigenic compounds ('biogenic minerals').

solvent
type: Class
subclass of: application
subclass of: chemical role
IAO_0000115: A liquid that can dissolve other substances (solutes) without any change in their chemical composition.
has related synonym: Loesungsmittel
has related synonym: solvant
has related synonym: solvents

Axiom
annotated source: solvent
annotated property: hasRelatedSynonym
annotated target: Loesungsmittel
has db xref: ChEBI

Axiom
annotated source: solvent
annotated property: hasRelatedSynonym
annotated target: solvant
has db xref: ChEBI

Axiom
annotated source: solvent
annotated property: hasRelatedSynonym
annotated target: solvents
has db xref: ChEBI

polar solvent
type: Class
subclass of: solvent
IAO_0000115: A solvent that is composed of polar molecules. Polar solvents can dissolve ionic compounds or ionisable covalent compounds.
has exact synonym: polar solvent
has related synonym: polar solvents

Axiom
annotated source: polar solvent
annotated property: hasExactSynonym
annotated target: polar solvent
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: polar solvent
annotated property: hasRelatedSynonym
annotated target: polar solvents
has db xref: ChEBI

protic solvent
type: Class
subclass of: Bronsted acid
subclass of: polar solvent
IAO_0000115: A polar solvent that is capable of acting as a hydron (proton) donor.
has exact synonym: protogenic solvent

Axiom
annotated source: protic solvent
annotated property: hasExactSynonym
annotated target: protogenic solvent
has db xref: IUPAC
has synonym type: IUPAC NAME

protophilic solvent
type: Class
subclass of: Bronsted base
subclass of: polar solvent

amphiprotic solvent
type: Class
subclass of: protic solvent
subclass of: protophilic solvent

hydrogen atom
type: Class
subclass of: inorganic molecular entity
subclass of: nonmetal atom
subclass of: s-block element atom
subclass of: Restriction
  on property: has role
  some values from: macronutrient
has exact synonym: hydrogen
has related synonym: 1H
has related synonym: H
has related synonym: Wasserstoff
has related synonym: hidrogeno
has related synonym: hydrogen
has related synonym: hydrogene

Axiom
annotated source: hydrogen atom
annotated property: hasExactSynonym
annotated target: hydrogen
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydrogen atom
annotated property: hasRelatedSynonym
annotated target: 1H
has db xref: IUPAC

Axiom
annotated source: hydrogen atom
annotated property: hasRelatedSynonym
annotated target: H
has db xref: IUPAC

Axiom
annotated source: hydrogen atom
annotated property: hasRelatedSynonym
annotated target: Wasserstoff
has db xref: ChEBI

Axiom
annotated source: hydrogen atom
annotated property: hasRelatedSynonym
annotated target: hidrogeno
has db xref: ChEBI

Axiom
annotated source: hydrogen atom
annotated property: hasRelatedSynonym
annotated target: hydrogen
has db xref: ChEBI

Axiom
annotated source: hydrogen atom
annotated property: hasRelatedSynonym
annotated target: hydrogene
has db xref: ChEBI

onium compound
type: Class
subclass of: heteroatomic molecular entity

onium cation
type: Class
subclass of: onium compound
IAO_0000115: Mononuclear cations derived by addition of a hydron to a mononuclear parent hydride of the pnictogen, chalcogen and halogen families.
has exact synonym: onium cations
has related synonym: onium cations
has related synonym: onium ion
has related synonym: onium ions

Axiom
annotated source: onium cation
annotated property: hasExactSynonym
annotated target: onium cations
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: onium cation
annotated property: hasRelatedSynonym
annotated target: onium cations
has db xref: ChEBI

Axiom
annotated source: onium cation
annotated property: hasRelatedSynonym
annotated target: onium ion
has db xref: ChEBI

Axiom
annotated source: onium cation
annotated property: hasRelatedSynonym
annotated target: onium ions
has db xref: ChEBI

chloronium
type: Class
subclass of: onium cation
subclass of: Restriction
  on property: is conjugate acid of
  some values from: hydrogen chloride
has exact synonym: chloranium
has exact synonym: chloronium
has related synonym: H2Cl(+)
has related synonym: [ClH2](+)

Axiom
annotated source: chloronium
annotated property: hasExactSynonym
annotated target: chloranium
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: chloronium
annotated property: hasExactSynonym
annotated target: chloronium
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: chloronium
annotated property: hasRelatedSynonym
annotated target: H2Cl(+)
has db xref: IUPAC

Axiom
annotated source: chloronium
annotated property: hasRelatedSynonym
annotated target: [ClH2](+)
has db xref: IUPAC

organic molecular entity
type: Class
subclass of: carbon group molecular entity
subclass of: Restriction
  on property: has part
  some values from: carbon atom
IAO_0000115: Any molecular entity that contains carbon.
has related synonym: organic compounds
has related synonym: organic entity
has related synonym: organic molecular entities

Axiom
annotated source: organic molecular entity
annotated property: hasRelatedSynonym
annotated target: organic compounds
has db xref: ChEBI

Axiom
annotated source: organic molecular entity
annotated property: hasRelatedSynonym
annotated target: organic entity
has db xref: ChEBI

Axiom
annotated source: organic molecular entity
annotated property: hasRelatedSynonym
annotated target: organic molecular entities
has db xref: ChEBI

role
type: Class
subclass of: role
IAO_0000115: A role is particular behaviour which a material entity may exhibit.
IAO_0000412: chebi.owl

chemical role
type: Class
subclass of: role
IAO_0000115: A role played by the molecular entity or part thereof within a chemical context.

nitrogen molecular entity
type: Class
subclass of: pnictogen molecular entity
subclass of: food additive
subclass of: Restriction
  on property: has part
  some values from: nitrogen atom
has related synonym: Nitrogenous compounds
has related synonym: nitrogen compounds
has related synonym: nitrogen molecular entities

Axiom
annotated source: nitrogen molecular entity
annotated property: hasRelatedSynonym
annotated target: Nitrogenous compounds
has db xref: KEGG_COMPOUND

Axiom
annotated source: nitrogen molecular entity
annotated property: hasRelatedSynonym
annotated target: nitrogen compounds
has db xref: ChEBI

Axiom
annotated source: nitrogen molecular entity
annotated property: hasRelatedSynonym
annotated target: nitrogen molecular entities
has db xref: ChEBI

biochemical role
type: Class
subclass of: biological role
IAO_0000115: A biological role played by the molecular entity or part thereof within a biochemical context.

physiological role
type: Class
subclass of: biological role
IAO_0000412: chebi.owl

inorganic hydroxy compound
type: Class
subclass of: hydroxides
subclass of: inorganic molecular entity
has related synonym: inorganic hydroxides

Axiom
annotated source: inorganic hydroxy compound
annotated property: hasRelatedSynonym
annotated target: inorganic hydroxides
has db xref: ChEBI

chemical substance
type: Class
subclass of: chemical entity
IAO_0000115: A chemical substance is a portion of matter of constant composition, composed of molecular entities of the same type or of different types.
has related synonym: Chemische Substanz

Axiom
annotated source: chemical substance
annotated property: hasRelatedSynonym
annotated target: Chemische Substanz
has db xref: ChEBI

monovalent inorganic cation
type: Class
subclass of: inorganic cation
IAO_0000115: An atom or small molecule with a positive charge that does not contain carbon in covalent linkage, with a valency of one.
has related synonym: a monovalent cation

Axiom
annotated source: monovalent inorganic cation
annotated property: hasRelatedSynonym
annotated target: a monovalent cation
has db xref: UniProt

food additive
type: Class
subclass of: application
subclass of: food component
IAO_0000115: Any substance which is added to food to preserve or enhance its flavour and/or appearance.
has related synonym: food additives

Axiom
annotated source: food additive
annotated property: hasRelatedSynonym
annotated target: food additives
has db xref: ChEBI

one-carbon compound
type: Class
subclass of: organic molecular entity
IAO_0000115: An organic molecular entity containing a single carbon atom (C1).
has related synonym: one-carbon compounds

Axiom
annotated source: one-carbon compound
annotated property: hasRelatedSynonym
annotated target: one-carbon compounds
has db xref: ChEBI

organic molecule
type: Class
subclass of: molecule
subclass of: organic molecular entity
IAO_0000115: Any molecule that consists of at least one carbon atom as part of the electrically neutral entity.
has related synonym: organic compound
has related synonym: organic compounds
has related synonym: organic molecules

Axiom
annotated source: organic molecule
annotated property: hasRelatedSynonym
annotated target: organic compound
has db xref: ChEBI

Axiom
annotated source: organic molecule
annotated property: hasRelatedSynonym
annotated target: organic compounds
has db xref: ChEBI

Axiom
annotated source: organic molecule
annotated property: hasRelatedSynonym
annotated target: organic molecules
has db xref: ChEBI

eukaryotic metabolite
type: Class
subclass of: metabolite
IAO_0000115: Any metabolite produced during a metabolic reaction in eukaryotes, the taxon that include members of the fungi, plantae and animalia kingdoms.
has related synonym: eukaryotic metabolites

Axiom
annotated source: eukaryotic metabolite
annotated property: hasRelatedSynonym
annotated target: eukaryotic metabolites
has db xref: ChEBI

animal metabolite
type: Class
subclass of: eukaryotic metabolite
IAO_0000115: Any eukaryotic metabolite produced during a metabolic reaction in animals that include diverse creatures from sponges, insects to mammals.
has related synonym: animal metabolites

Axiom
annotated source: animal metabolite
annotated property: hasRelatedSynonym
annotated target: animal metabolites
has db xref: ChEBI

mammalian metabolite
type: Class
subclass of: animal metabolite
IAO_0000115: Any animal metabolite produced during a metabolic reaction in mammals.
has related synonym: mammalian metabolites

Axiom
annotated source: mammalian metabolite
annotated property: hasRelatedSynonym
annotated target: mammalian metabolites
has db xref: ChEBI

mouse metabolite
type: Class
subclass of: mammalian metabolite
IAO_0000115: Any mammalian metabolite produced during a metabolic reaction in a mouse (Mus musculus).
has related synonym: Mus musculus metabolite
has related synonym: Mus musculus metabolites
has related synonym: mouse metabolites

Axiom
annotated source: mouse metabolite
annotated property: hasRelatedSynonym
annotated target: Mus musculus metabolite
has db xref: ChEBI

Axiom
annotated source: mouse metabolite
annotated property: hasRelatedSynonym
annotated target: Mus musculus metabolites
has db xref: ChEBI

Axiom
annotated source: mouse metabolite
annotated property: hasRelatedSynonym
annotated target: mouse metabolites
has db xref: ChEBI

Saccharomyces cerevisiae metabolite
type: Class
subclass of: fungal metabolite
IAO_0000115: Any fungal metabolite produced during a metabolic reaction in Baker's yeast (Saccharomyces cerevisiae).
has related synonym: S. cerevisiae metabolite
has related synonym: S. cerevisiae metabolites
has related synonym: S. cerevisiae secondary metabolite
has related synonym: S. cerevisiae secondary metabolites
has related synonym: Saccharomyces cerevisiae metabolites
has related synonym: Saccharomyces cerevisiae secondary metabolites
has related synonym: baker's yeast metabolite
has related synonym: baker's yeast metabolites
has related synonym: baker's yeast secondary metabolite
has related synonym: baker's yeast secondary metabolites

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: hasRelatedSynonym
annotated target: S. cerevisiae metabolite
has db xref: ChEBI

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: hasRelatedSynonym
annotated target: S. cerevisiae metabolites
has db xref: ChEBI

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: hasRelatedSynonym
annotated target: S. cerevisiae secondary metabolite
has db xref: ChEBI

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: hasRelatedSynonym
annotated target: S. cerevisiae secondary metabolites
has db xref: ChEBI

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: hasRelatedSynonym
annotated target: Saccharomyces cerevisiae metabolites
has db xref: ChEBI

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: hasRelatedSynonym
annotated target: Saccharomyces cerevisiae secondary metabolites
has db xref: ChEBI

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: hasRelatedSynonym
annotated target: baker's yeast metabolite
has db xref: ChEBI

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: hasRelatedSynonym
annotated target: baker's yeast metabolites
has db xref: ChEBI

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: hasRelatedSynonym
annotated target: baker's yeast secondary metabolite
has db xref: ChEBI

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: hasRelatedSynonym
annotated target: baker's yeast secondary metabolites
has db xref: ChEBI

prokaryotic metabolite
type: Class
subclass of: metabolite
IAO_0000115: Any metabolite produced during a metabolic reaction in prokaryotes, the taxon that include members of domains such as the bacteria and archaea.
has related synonym: prokaryotic metabolites

Axiom
annotated source: prokaryotic metabolite
annotated property: hasRelatedSynonym
annotated target: prokaryotic metabolites
has db xref: ChEBI

greenhouse gas
type: Class
subclass of: chemical role
IAO_0000115: A gas in an atmosphere that absorbs and emits radiation within the thermal infrared range, so contributing to the 'greenhouse effect'.
has related synonym: greenhouse gases
in subset: envoPolar

Axiom
annotated source: greenhouse gas
annotated property: hasRelatedSynonym
annotated target: greenhouse gases
has db xref: ChEBI

propellant
type: Class
subclass of: application
IAO_0000115: A compressed gas or liquid with a boiling point lower than room temperature which to used to propel and dispense liquids such as deodorants, insecticides, paints, etc. from aerosol cans.
has related synonym: propellants

Axiom
annotated source: propellant
annotated property: hasRelatedSynonym
annotated target: propellants
has db xref: ChEBI

fungal metabolite
type: Class
subclass of: eukaryotic metabolite
IAO_0000115: Any eukaryotic metabolite produced during a metabolic reaction in fungi, the kingdom that includes microorganisms such as the yeasts and moulds.
has related synonym: fungal metabolites

Axiom
annotated source: fungal metabolite
annotated property: hasRelatedSynonym
annotated target: fungal metabolites
has db xref: ChEBI

bacterial metabolite
type: Class
subclass of: prokaryotic metabolite
IAO_0000115: Any prokaryotic metabolite produced during a metabolic reaction in bacteria.

Escherichia coli metabolite
type: Class
subclass of: bacterial metabolite
IAO_0000115: Any bacterial metabolite produced during a metabolic reaction in Escherichia coli.
has related synonym: E.coli metabolite
has related synonym: E.coli metabolites
has related synonym: Escherichia coli metabolites

Axiom
annotated source: Escherichia coli metabolite
annotated property: hasRelatedSynonym
annotated target: E.coli metabolite
has db xref: ChEBI

Axiom
annotated source: Escherichia coli metabolite
annotated property: hasRelatedSynonym
annotated target: E.coli metabolites
has db xref: ChEBI

Axiom
annotated source: Escherichia coli metabolite
annotated property: hasRelatedSynonym
annotated target: Escherichia coli metabolites
has db xref: ChEBI

human metabolite
type: Class
subclass of: mammalian metabolite
IAO_0000115: Any mammalian metabolite produced during a metabolic reaction in humans (Homo sapiens).
has related synonym: H. sapiens metabolite
has related synonym: H. sapiens metabolites
has related synonym: Homo sapiens metabolite
has related synonym: Homo sapiens metabolites

Axiom
annotated source: human metabolite
annotated property: hasRelatedSynonym
annotated target: H. sapiens metabolite
has db xref: ChEBI

Axiom
annotated source: human metabolite
annotated property: hasRelatedSynonym
annotated target: H. sapiens metabolites
has db xref: ChEBI

Axiom
annotated source: human metabolite
annotated property: hasRelatedSynonym
annotated target: Homo sapiens metabolite
has db xref: ChEBI

Axiom
annotated source: human metabolite
annotated property: hasRelatedSynonym
annotated target: Homo sapiens metabolites
has db xref: ChEBI

food packaging gas
type: Class
subclass of: food additive
IAO_0000115: A food additive that is a (generally inert) gas which is used to envelop foodstuffs during packing and so protect them from unwanted chemical reactions such as food spoilage or oxidation during subsequent transport and storage. The term includes propellant gases, used to expel foods from a container.
has related synonym: food packaging gases

Axiom
annotated source: food packaging gas
annotated property: hasRelatedSynonym
annotated target: food packaging gases
has db xref: ChEBI

food propellant
type: Class
subclass of: food additive
subclass of: propellant
IAO_0000115: A propellant that is used to expel foods from an aerosol container.
has related synonym: food propellants

Axiom
annotated source: food propellant
annotated property: hasRelatedSynonym
annotated target: food propellants
has db xref: ChEBI

food component
type: Class
subclass of: physiological role
IAO_0000115: Any substance that is distributed in foodstuffs. It includes materials derived from plants or animals, such as vitamins or minerals, as well as environmental contaminants.
has related synonym: dietary component
has related synonym: dietary components
has related synonym: food components

Axiom
annotated source: food component
annotated property: hasRelatedSynonym
annotated target: dietary component
has db xref: ChEBI

Axiom
annotated source: food component
annotated property: hasRelatedSynonym
annotated target: dietary components
has db xref: ChEBI

Axiom
annotated source: food component
annotated property: hasRelatedSynonym
annotated target: food components
has db xref: ChEBI

monovalent inorganic anion
type: Class
subclass of: inorganic anion
IAO_0000115: Any inorganic anion with a valency of one.
has related synonym: monovalent inorganic anions

Axiom
annotated source: monovalent inorganic anion
annotated property: hasRelatedSynonym
annotated target: monovalent inorganic anions
has db xref: ChEBI

geographic feature
type: Class
subclass of: astronomical body part
has db xref: https://en.wikipedia.org/wiki/Geographic_feature
has exact synonym: macroscopic spatial feature
in subset: envoPolar
comment: May appear on a map.

anthropogenic geographic feature
type: Class
equivalent class: Class
  intersection of: astronomical body part
  intersection of: Restriction
    on property: formed as result of
    some values from: anthropisation
subclass of: geographic feature
subclass of: Restriction
  on property: formed as result of
  some values from: anthropisation
IAO_0000115: An anthropogenic geographic feature is a geographic feature resulting from the influence of human beings on nature.
has db xref: FTT:78
has db xref: TGN:50001
has related synonym: man-made feature
has related synonym: manmade feature

Axiom
annotated source: anthropogenic geographic feature
annotated property: IAO_0000115
annotated target: An anthropogenic geographic feature is a geographic feature resulting from the influence of human beings on nature.
has db xref: ORCID:0000-0002-4366-3088

Axiom
annotated source: anthropogenic geographic feature
annotated property: IAO_0000115
annotated target: An anthropogenic geographic feature is a geographic feature resulting from the influence of human beings on nature.
has db xref: ORCID:0000-0002-4366-3088

hydrographic feature
type: Class
equivalent class: Class
  union of: Class
    intersection of: environmental feature
    intersection of: Restriction
      on property: adjacent to
      some values from: water body
  union of: Restriction
    on property: partially_surrounded_by
    some values from: liquid water
subclass of: geographic feature
IAO_0000115: A geographical feature associated with water.
has db xref: FTT:131
has db xref: FTT:280
has db xref: FTT:711
has db xref: FTT:761
has db xref: FTT:824
has db xref: FTT:825
has db xref: FTT:826
has db xref: FTT:827
has db xref: FTT:828
has db xref: FTT:829
has db xref: Geonames:H.OVF
has related synonym: fluvial feature
in subset: envoPolar

Axiom
annotated source: hydrographic feature
annotated property: IAO_0000115
annotated target: A geographical feature associated with water.
has db xref: MA:ma

Axiom
annotated source: hydrographic feature
annotated property: hasRelatedSynonym
annotated target: fluvial feature
has db xref: ADL:FTT

ocean
type: Class
subclass of: marine water body
subclass of: saline water body
subclass of: Restriction
  on property: composed primarily of
  some values from: sea water
IAO_0000115: A marine water body which is constitutes the majority of an astronomical body's hydrosphere.
has alternative id: LTER:695
has db xref: EcoLexicon:ocean
has db xref: FTT:1019
has db xref: FTT:943
has db xref: Geonames:H.OCN
has db xref: SWEETRealm:Ocean
has db xref: TGN:21102
has db xref: https://en.wikipedia.org/wiki/Ocean
has exact synonym: Ocean
has exact synonym: ocean
has related synonym: ocean region
in subset: envoMarine
in subset: envoPolar

Axiom
annotated source: ocean
annotated property: hasAlternativeId
annotated target: LTER:695
has db xref: http://129.24.124.196/vocab/vocab/index.php

Axiom
annotated source: ocean
annotated property: hasExactSynonym
annotated target: Ocean
has db xref: NASA:earthrealm

Axiom
annotated source: ocean
annotated property: hasExactSynonym
annotated target: ocean
has db xref: Geonames:feature

Axiom
annotated source: ocean
annotated property: hasRelatedSynonym
annotated target: ocean region
has db xref: ADL:FTT

sea
type: Class
subclass of: marine water body
subclass of: saline water body
subclass of: Restriction
  on property: composed primarily of
  some values from: sea water
IAO_0000115: A large expanse of saline water usually connected with an ocean.
has db xref: EcoLexicon:sea
has db xref: FTT:233
has db xref: FTT:830
has db xref: Geonames:H.SEA
has db xref: TGN:21103
has db xref: https://en.wikipedia.org/wiki/Sea
has exact synonym: Sea
has exact synonym: sea
has narrow synonym: channel
has narrow synonym: closed sea
has narrow synonym: marginal sea
has narrow synonym: open sea
has narrow synonym: open sound
has narrow synonym: open water
has OBO namespace: ENVO
id: ENVO:00000016
in subset: envoMarine
in subset: envoPolar

Axiom
annotated source: sea
annotated property: IAO_0000115
annotated target: A large expanse of saline water usually connected with an ocean.
has db xref: https://en.wikipedia.org/wiki/Sea

Axiom
annotated source: sea
annotated property: hasExactSynonym
annotated target: Sea
has db xref: NASA:earthrealm

Axiom
annotated source: sea
annotated property: hasExactSynonym
annotated target: sea
has db xref: ADL:FTT

Axiom
annotated source: sea
annotated property: hasExactSynonym
annotated target: sea
has db xref: Geonames:feature

Axiom
annotated source: sea
annotated property: hasNarrowSynonym
annotated target: closed sea
has db xref: USGS:SDTS

Axiom
annotated source: sea
annotated property: hasNarrowSynonym
annotated target: marginal sea
has db xref: USGS:SDTS

Axiom
annotated source: sea
annotated property: hasNarrowSynonym
annotated target: open sea
has db xref: USGS:SDTS

Axiom
annotated source: sea
annotated property: hasNarrowSynonym
annotated target: open sound
has db xref: USGS:SDTS

Axiom
annotated source: sea
annotated property: hasNarrowSynonym
annotated target: open water
has db xref: USGS:SDTS

saline hydrographic feature
type: Class
equivalent class: Class
  union of: Class
    intersection of: hydrographic feature
    intersection of: Restriction
      on property: adjacent to
      some values from: Class
        intersection of: water body
        intersection of: Restriction
  union of: Restriction
    on property: partially_surrounded_by
    some values from: saline water
subclass of: hydrographic feature
IAO_0000115: A geographical feature associated with water with a halinity above 30 ppt (roughly 35 g/L).
has OBO namespace: ENVO
id: ENVO:00000017

Axiom
annotated source: saline hydrographic feature
annotated property: IAO_0000115
annotated target: A geographical feature associated with water with a halinity above 30 ppt (roughly 35 g/L).
has db xref: https://en.wikipedia.org/wiki/Salinity

saline lake
type: Class
equivalent class: Class
  intersection of: lake
  intersection of: Restriction
    on property: composed primarily of
    some values from: saline water
subclass of: lake
subclass of: saline water body
IAO_0000115: A lake whose water contains a considerable concentration of dissolved salts.
has db xref: FTT:221
has db xref: FTT:907
has db xref: Geonames:H.LKN
has db xref: Geonames:H.LKSN
has db xref: TGN:21116
has db xref: https://en.wikipedia.org/wiki/Saline_lake
has exact synonym: salt lake
has related synonym: salina
has related synonym: soda lake

Axiom
annotated source: saline lake
annotated property: IAO_0000115
annotated target: A lake whose water contains a considerable concentration of dissolved salts.
has db xref: MA:ma

Axiom
annotated source: saline lake
annotated property: hasExactSynonym
annotated target: salt lake
has db xref: USGS:SDTS

Axiom
annotated source: saline lake
annotated property: hasRelatedSynonym
annotated target: salina
has db xref: USGS:SDTS

lake
type: Class
equivalent class: Class
  intersection of: lentic water body
  intersection of: Restriction
    on property: partially_surrounded_by
    some values from: land
  intersection of: Restriction
    on property: located in
    some values from: Class
      intersection of: depression
      intersection of: Restriction
        on property: part of
        some values from: land
subclass of: irrigation source
subclass of: lentic water body
subclass of: Restriction
  on property: partially_surrounded_by
  some values from: land
subclass of: Restriction
  on property: located in
  some values from: Class
    intersection of: depression
    intersection of: Restriction
      on property: part of
      some values from: land
IAO_0000115: A body of water or other liquid of considerable size contained in a depression on a landmass.
has alternative id: LTER:278
has db xref: EcoLexicon:lake
has db xref: FTT:221
has db xref: FTT:704
has db xref: FTT:909
has db xref: Geonames:H.LK
has db xref: Geonames:H.LKS
has db xref: SPIRE:Lake_or_pond
has db xref: SWEETRealm:Lake
has db xref: TGN:21114
has db xref: TGN:21115
has narrow synonym: catch basin
has narrow synonym: open water
has narrow synonym: tarn
has related synonym: broad
has related synonym: llyn
has related synonym: loch
has related synonym: lochan
has related synonym: lough
has related synonym: mere
has related synonym: mortlake
has related synonym: pasteuer lake
in subset: envoPolar

Axiom
annotated source: lake
annotated property: IAO_0000115
annotated target: A body of water or other liquid of considerable size contained in a depression on a landmass.
has db xref: https://en.wikipedia.org/wiki/Lake

Axiom
annotated source: lake
annotated property: hasAlternativeId
annotated target: LTER:278
has db xref: http://129.24.124.196/vocab/vocab/index.php

Axiom
annotated source: lake
annotated property: hasNarrowSynonym
annotated target: catch basin
has db xref: USGS:SDTS

Axiom
annotated source: lake
annotated property: hasNarrowSynonym
annotated target: open water
has db xref: USGS:SDTS

Axiom
annotated source: lake
annotated property: hasNarrowSynonym
annotated target: tarn
has db xref: ADL:FTT

Axiom
annotated source: lake
annotated property: hasRelatedSynonym
annotated target: lochan
has db xref: ADL:FTT

Axiom
annotated source: lake
annotated property: hasRelatedSynonym
annotated target: mortlake
has db xref: USGS:SDTS

Axiom
annotated source: lake
annotated property: hasRelatedSynonym
annotated target: pasteuer lake
has db xref: USGS:SDTS

wetland area
type: Class
equivalent class: Class
  intersection of: vegetated area
  intersection of: Restriction
    on property: overlaps
    some values from: wetland ecosystem
subclass of: vegetated area
subclass of: Restriction
  on property: overlaps
  some values from: wetland ecosystem
IAO_0000115: An vegetated area which overlaps a wetland ecosystem.
has related synonym: WetlandRegion

Axiom
annotated source: wetland area
annotated property: IAO_0000115
annotated target: An vegetated area which overlaps a wetland ecosystem.
has db xref: https://en.wikipedia.org/wiki/Wetland

Axiom
annotated source: wetland area
annotated property: hasRelatedSynonym
annotated target: WetlandRegion
has db xref: NASA:earthrealm

water body
type: Class
subclass of: water mass
subclass of: Restriction
  on property: part of
  some values from: hydrosphere
subclass of: Restriction
  on property: composed primarily of
  some values from: water
IAO_0000115: An accumulation of water of varying size.
has broad synonym: hydrographic feature
has db xref: EcoLexicon:waterbody
has db xref: FTT:131
has db xref: FTT:280
has db xref: FTT:827
has db xref: SWEETRealm:BodyOfWater
has db xref: TGN:21100
has db xref: TGN:21101
has db xref: https://en.wikipedia.org/wiki/Water_body
has exact synonym: aquatic feature
has exact synonym: bodies of water
has exact synonym: body of water
has exact synonym: waterbody
comment: https://en.wikipedia.org/wiki/ The term body of water most often refers to large accumulations of water, such as oceans, seas, and lakes, but it includes smaller pools of water such as ponds, wetlands, or more rarely, puddles. A body of water does not have to be still or contained; Rivers, streams, canals, and other geographical features where water moves from one place to another are also considered bodies of water.

Axiom
annotated source: water body
annotated property: IAO_0000115
annotated target: An accumulation of water of varying size.
has db xref: https://en.wikipedia.org/wiki/Body_of_water

Axiom
annotated source: water body
annotated property: hasBroadSynonym
annotated target: hydrographic feature
has db xref: ADL:FTT

Axiom
annotated source: water body
annotated property: hasExactSynonym
annotated target: bodies of water
has db xref: Getty:TGN

Axiom
annotated source: water body
annotated property: hasExactSynonym
annotated target: body of water
has db xref: ADL:FTT

Axiom
annotated source: water body
annotated property: hasExactSynonym
annotated target: body of water
has db xref: Getty:TGN

valley
type: Class
subclass of: higher-level landform
subclass of: geographic basin
subclass of: Restriction
  on property: has quality
  some values from: elongated
subclass of: Restriction
  on property: formed as result of
  some values from: planetary erosion
IAO_0000115: A depression which has been formed as a result of erosion by water or ice and which is low-lying, bordered by higher ground, and especially elongate.
has db xref: EcoLexicon:valley
has db xref: FTT:158
has db xref: FTT:166
has db xref: FTT:418
has db xref: FTT:761
has db xref: FTT:811
has db xref: FTT:949
has db xref: Geonames:T.GRGE
has db xref: Geonames:T.VAL
has db xref: Geonames:T.VALS
has db xref: SWEETRealm:Valley
has db xref: TGN:21425
has db xref: TGN:21451
has db xref: TGN:21452
has db xref: TGN:21453
has narrow synonym: chasm
has narrow synonym: coulee
has narrow synonym: dale
has narrow synonym: glacial gorge
has narrow synonym: glacial trough
has narrow synonym: gulch
has narrow synonym: gully
has narrow synonym: median valley
has narrow synonym: shelf valley
has related synonym: glen
has related synonym: goe
has related synonym: gorge
has related synonym: graben
has related synonym: hollow
has related synonym: lavaka
has related synonym: moat
has related synonym: ravine
has related synonym: re-entrant
has related synonym: seachannel
has related synonym: strath
has related synonym: trench
has related synonym: vale
has related synonym: water gap
comment: Valleys are typically located between hills our mountains.

Axiom
annotated source: valley
annotated property: IAO_0000115
annotated target: A depression which has been formed as a result of erosion by water or ice and which is low-lying, bordered by higher ground, and especially elongate.
has db xref: ADL:FTT
has db xref: https://en.wikipedia.org/wiki/Valley

Axiom
annotated source: valley
annotated property: hasNarrowSynonym
annotated target: chasm
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: hasNarrowSynonym
annotated target: coulee
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: hasNarrowSynonym
annotated target: dale
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: hasNarrowSynonym
annotated target: glacial gorge
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: hasNarrowSynonym
annotated target: glacial trough
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: hasNarrowSynonym
annotated target: gulch
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: hasNarrowSynonym
annotated target: gully
has db xref: Getty:TGN

Axiom
annotated source: valley
annotated property: hasNarrowSynonym
annotated target: gully
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: hasNarrowSynonym
annotated target: median valley
has db xref: ADL:FTT

Axiom
annotated source: valley
annotated property: hasNarrowSynonym
annotated target: median valley
has db xref: Geonames:feature

Axiom
annotated source: valley
annotated property: hasNarrowSynonym
annotated target: shelf valley
has db xref: Geonames:feature

Axiom
annotated source: valley
annotated property: hasRelatedSynonym
annotated target: glen
has db xref: ADL:FTT

Axiom
annotated source: valley
annotated property: hasRelatedSynonym
annotated target: glen
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: hasRelatedSynonym
annotated target: goe
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: hasRelatedSynonym
annotated target: gorge
has db xref: Geonames:feature

Axiom
annotated source: valley
annotated property: hasRelatedSynonym
annotated target: gorge
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: hasRelatedSynonym
annotated target: graben
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: hasRelatedSynonym
annotated target: hollow
has db xref: ADL:FTT

Axiom
annotated source: valley
annotated property: hasRelatedSynonym
annotated target: hollow
has db xref: Getty:TGN

Axiom
annotated source: valley
annotated property: hasRelatedSynonym
annotated target: hollow
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: hasRelatedSynonym
annotated target: moat
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: hasRelatedSynonym
annotated target: ravine
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: hasRelatedSynonym
annotated target: re-entrant
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: hasRelatedSynonym
annotated target: seachannel
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: hasRelatedSynonym
annotated target: strath
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: hasRelatedSynonym
annotated target: trench
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: hasRelatedSynonym
annotated target: water gap
has db xref: USGS:SDTS

agricultural field
type: Class
subclass of: field
IAO_0000115: A field which is located on land and used for agricultural purposes, such as the grazing of livestock or the cultivation of crops.
has broad synonym: agricultural site
has exact synonym: field
has related synonym: cropland
has related synonym: grassland

Axiom
annotated source: agricultural field
annotated property: IAO_0000115
annotated target: A field which is located on land and used for agricultural purposes, such as the grazing of livestock or the cultivation of crops.
has db xref: https://en.wikipedia.org/wiki/Field_%28agriculture%29

Axiom
annotated source: agricultural field
annotated property: hasBroadSynonym
annotated target: agricultural site
has db xref: ADL:FTT

Axiom
annotated source: agricultural field
annotated property: hasExactSynonym
annotated target: field
has db xref: Geonames:feature

Axiom
annotated source: agricultural field
annotated property: hasRelatedSynonym
annotated target: cropland
has db xref: USGS:SDTS

Axiom
annotated source: agricultural field
annotated property: hasRelatedSynonym
annotated target: grassland
has db xref: USGS:SDTS

glacial feature
type: Class
equivalent class: Class
  intersection of: environmental feature
  intersection of: Restriction
    on property: composed primarily of
    some values from: Class
      union of: water ice
      union of: snow
subclass of: environmental feature
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    union of: water ice
    union of: snow
IAO_0000115: A hydrographic feature characterized by the dominance of snow or ice.
has db xref: EcoLexicon:ice
has db xref: FTT:648
has db xref: SWEETRealm:LandIce
has db xref: TGN:21410
has narrow synonym: glacer
has related synonym: Ice
has related synonym: LandIce
has related synonym: glacial landform
has related synonym: glacier feature
in subset: envoPolar
comment: Likely to be depopulated and "glacial" made into a quality or similar.

Axiom
annotated source: glacial feature
annotated property: IAO_0000115
annotated target: A hydrographic feature characterized by the dominance of snow or ice.
has db xref: MA:ma

Axiom
annotated source: glacial feature
annotated property: hasNarrowSynonym
annotated target: glacer
has db xref: ADL:FTT

Axiom
annotated source: glacial feature
annotated property: hasRelatedSynonym
annotated target: Ice
has db xref: NASA:earthrealm

Axiom
annotated source: glacial feature
annotated property: hasRelatedSynonym
annotated target: LandIce
has db xref: NASA:earthrealm

Axiom
annotated source: glacial feature
annotated property: hasRelatedSynonym
annotated target: glacial landform
has db xref: Getty:TGN

Axiom
annotated source: glacial feature
annotated property: hasRelatedSynonym
annotated target: glacier feature
has db xref: ADL:FTT

permafrost
type: Class
subclass of: environmental material
subclass of: Restriction
  on property: has quality
  some values from: decreased temperature
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    union of: rock
    union of: soil
    union of: sediment
IAO_0000115: Soil or rock and included ice or organic material at or below the freezing point of water (0 degrees Celsius or 32 degrees Fahrenheit) for two or more years.
has db xref: EcoLexicon:permafrost
has db xref: LTER:408
has db xref: https://en.wikipedia.org/wiki/Permafrost
has exact synonym: Permafrost
in subset: envoPolar
comment: Ice is not always present, as may be in the case of nonporous bedrock, but it frequently occurs and it may be in amounts exceeding the potential hydraulic saturation of the ground material.

Axiom
annotated source: permafrost
annotated property: IAO_0000115
annotated target: Soil or rock and included ice or organic material at or below the freezing point of water (0 degrees Celsius or 32 degrees Fahrenheit) for two or more years.
has db xref: https://en.wikipedia.org/wiki/Permafrost

Axiom
annotated source: permafrost
annotated property: hasExactSynonym
annotated target: Permafrost
has db xref: NASA:earthrealm

elevation
type: Class
subclass of: solid astronomical body part
subclass of: Restriction
  on property: has part
  some values from: slope
subclass of: Restriction
  on property: has quality
  some values from: increased elevation
IAO_0000115: A landform elevated above the surrounding area.
has db xref: LTER:177
has db xref: SWEETRealm:Elevation
has db xref: https://en.wikipedia.org/wiki/Elevation

Axiom
annotated source: elevation
annotated property: IAO_0000115
annotated target: A landform elevated above the surrounding area.
has db xref: MA:ma

solid astronomical body part
type: Class
equivalent class: Class
  intersection of: astronomical body part
  intersection of: Restriction
    on property: composed primarily of
    some values from: solid environmental material
subclass of: astronomical body part
subclass of: Restriction
  on property: composed primarily of
  some values from: solid environmental material
IAO_0000115: A part of an astronomical body which is primarily composed of a continuous volume of solid material, shaped by one or more environmental processes.
has db xref: EcoLexicon:landform
has db xref: EcoLexicon:landforms
has db xref: FTT:754
has db xref: FTT:96
has db xref: SWEETRealm:Landform
has db xref: TGN:21400
has db xref: TGN:21401
has related synonym: geological feature
has related synonym: physiographic feature

Axiom
annotated source: solid astronomical body part
annotated property: IAO_0000115
annotated target: A part of an astronomical body which is primarily composed of a continuous volume of solid material, shaped by one or more environmental processes.
has db xref: https://en.wikipedia.org/wiki/Landform

Axiom
annotated source: solid astronomical body part
annotated property: hasRelatedSynonym
annotated target: geological feature
has db xref: ADL:FTT

saline wetland
type: Class
equivalent class: Restriction
  on property: overlaps
  some values from: Class
    intersection of: land
    intersection of: Restriction
      on property: composed primarily of
      some values from: Class
        intersection of: soil
        intersection of: Restriction
subclass of: wetland area
subclass of: Restriction
  on property: overlaps
  some values from: Class
    intersection of: land
    intersection of: Restriction
      on property: composed primarily of
      some values from: Class
        intersection of: soil
        intersection of: Restriction
has OBO namespace: ENVO
id: ENVO:00000240
comment: It would be more correct to say that this has_quality salty or has_part ((soil and water) and has_increased_levels_of salt.

glacial valley
type: Class
subclass of: valley
IAO_0000115: A valley that contains, or contained, a glacier and was formed by glacial activity. Typically U-shaped in cross-section.
has db xref: https://en.wikipedia.org/wiki/Glacial_valley
has OBO namespace: ENVO
has related synonym: valley
id: ENVO:00000248
in subset: envoPolar

Axiom
annotated source: glacial valley
annotated property: IAO_0000115
annotated target: A valley that contains, or contained, a glacier and was formed by glacial activity. Typically U-shaped in cross-section.
has db xref: MA:ma

Axiom
annotated source: glacial valley
annotated property: hasRelatedSynonym
annotated target: valley
has db xref: USGS:SDTS

shore
type: Class
equivalent class: Class
  intersection of: land
  intersection of: Restriction
    on property: adjacent to
    some values from: water body
subclass of: hydrographic feature
subclass of: land
subclass of: Restriction
  on property: adjacent to
  some values from: water body
IAO_0000115: That part of the land in immediate contact with a body of water including the area between high and low water lines.
has broad synonym: coastal zone
has db xref: EcoLexicon:shore
has db xref: FTT:240
has db xref: FTT:503
has db xref: FTT:504
has db xref: Geonames:T.SHOR
has db xref: SWEETRealm:Shore
has db xref: TGN:21481
has db xref: https://en.wikipedia.org/wiki/Shore
has exact synonym: SHORE
has exact synonym: shore
has narrow synonym: shoreface
has related synonym: beach face
has related synonym: foreshore
has related synonym: inshore
has related synonym: rivage
has related synonym: seashore
has related synonym: strand

Axiom
annotated source: shore
annotated property: IAO_0000115
annotated target: That part of the land in immediate contact with a body of water including the area between high and low water lines.
has db xref: USGS:SDTS

Axiom
annotated source: shore
annotated property: hasBroadSynonym
annotated target: coastal zone
has db xref: ADL:FTT

Axiom
annotated source: shore
annotated property: hasExactSynonym
annotated target: SHORE
has db xref: USGS:SDTS

Axiom
annotated source: shore
annotated property: hasExactSynonym
annotated target: shore
has db xref: Geonames:feature

Axiom
annotated source: shore
annotated property: hasNarrowSynonym
annotated target: shoreface
has db xref: USGS:SDTS

Axiom
annotated source: shore
annotated property: hasRelatedSynonym
annotated target: beach face
has db xref: USGS:SDTS

Axiom
annotated source: shore
annotated property: hasRelatedSynonym
annotated target: foreshore
has db xref: USGS:SDTS

Axiom
annotated source: shore
annotated property: hasRelatedSynonym
annotated target: inshore
has db xref: USGS:SDTS

Axiom
annotated source: shore
annotated property: hasRelatedSynonym
annotated target: rivage
has db xref: USGS:SDTS

Axiom
annotated source: shore
annotated property: hasRelatedSynonym
annotated target: seashore
has db xref: USGS:SDTS

Axiom
annotated source: shore
annotated property: hasRelatedSynonym
annotated target: strand
has db xref: USGS:SDTS

depression
type: Class
subclass of: irrigation source
subclass of: agronomic land element
subclass of: Restriction
  on property: has part
  some values from: slope
subclass of: Restriction
  on property: has quality
  some values from: decreased elevation
subclass of: Restriction
  on property: has quality
  some values from: sloped downward
IAO_0000115: A landform sunken or depressed below the surrounding area.
IAO_0000116: Clarify that this pertains to the planetary crust and create superclass for general topological depressions. https://github.com/EnvironmentOntology/envo/issues/486
has db xref: EcoLexicon:depression
has db xref: FTT:175
has db xref: FTT:215
has db xref: FTT:216
has db xref: Geonames:T.DPR
has db xref: Geonames:T.PAN
has db xref: Geonames:T.PANS
has db xref: SWEETRealm:Depression
has db xref: TGN:21454
has db xref: TGN:21497
has db xref: TGN:21521
has related synonym: barrier basin
has related synonym: depression
has related synonym: non tidal basin
has related synonym: pan
has related synonym: pan (geologic)
has related synonym: pans
has related synonym: tidal basin

Axiom
annotated source: depression
annotated property: IAO_0000115
annotated target: A landform sunken or depressed below the surrounding area.
has db xref: https://en.wikipedia.org/wiki/Depression_%28geology%29

Axiom
annotated source: depression
annotated property: hasRelatedSynonym
annotated target: barrier basin
has db xref: USGS:SDTS

Axiom
annotated source: depression
annotated property: hasRelatedSynonym
annotated target: depression
has db xref: Geonames:feature

Axiom
annotated source: depression
annotated property: hasRelatedSynonym
annotated target: non tidal basin
has db xref: USGS:SDTS

Axiom
annotated source: depression
annotated property: hasRelatedSynonym
annotated target: pan
has db xref: Geonames:feature

Axiom
annotated source: depression
annotated property: hasRelatedSynonym
annotated target: pan
has db xref: Getty:TGN

Axiom
annotated source: depression
annotated property: hasRelatedSynonym
annotated target: pan (geologic)
has db xref: ADL:FTT

Axiom
annotated source: depression
annotated property: hasRelatedSynonym
annotated target: pans
has db xref: Geonames:feature

Axiom
annotated source: depression
annotated property: hasRelatedSynonym
annotated target: tidal basin
has db xref: USGS:SDTS

biome
type: Class
subclass of: ecosystem
subclass of: Restriction
  on property: part of
  some values from: biosphere
subclass of: Restriction
  on property: determined by
  some values from: ecological community
subclass of: Restriction
  on property: has part
  min qualified cardinality: 2
  on class: habitat
disjoint with: ecoregion
disjoint with: ecozone
IAO_0000115: A biome is an ecosystem to which resident ecological communities have evolved adaptations.
has alternative id: LTER:809
has db xref: EcoLexicon:biome
has exact synonym: major habitat type
has related synonym: EcosytemType
comment: There has been some concern raised (see Issue #143) about the usefulness of the assertion that organisms have evolved within a given biome. They may have evolved adaptations elsewhere and demonstrating one or the other is often not feasible. Consider relabelling to "environmental system determined by an ecological community" or similar.

Axiom
annotated source: biome
annotated property: IAO_0000115
annotated target: A biome is an ecosystem to which resident ecological communities have evolved adaptations.
has db xref: DOI:10.1186/2041-1480-4-43
has db xref: https://en.wikipedia.org/wiki/Biome

Axiom
annotated source: biome
annotated property: hasAlternativeId
annotated target: LTER:809
has db xref: http://129.24.124.196/vocab/vocab/index.php

Axiom
annotated source: biome
annotated property: hasExactSynonym
annotated target: major habitat type
has db xref: WWF:Biome

Axiom
annotated source: biome
annotated property: hasRelatedSynonym
annotated target: EcosytemType
has db xref: NASA:earthrealm

terrestrial biome
type: Class
subclass of: biome
IAO_0000115: A biome that applies to the terrestrial realm.
has db xref: LTER:798
has db xref: SPIRE:Terrestrial
has OBO namespace: ENVO
has related synonym: terrestrial realm
id: ENVO:00000446

Axiom
annotated source: terrestrial biome
annotated property: IAO_0000115
annotated target: A biome that applies to the terrestrial realm.
has db xref: https://en.wikipedia.org/wiki/Biome#Terrestrial_biomes

marine biome
type: Class
subclass of: aquatic biome
subclass of: marine environment
IAO_0000115: An aquatic biome that comprises systems of open-ocean and unprotected coastal habitats, characterized by exposure to wave action, tidal fluctuation, and ocean currents as well as systems that largely resemble these. Water in the marine biome is generally within the salinity range of seawater: 30 to 38 ppt.
has db xref: SPIRE:Marine
has related synonym: marine realm
in subset: envoPolar

Axiom
annotated source: marine biome
annotated property: IAO_0000115
annotated target: An aquatic biome that comprises systems of open-ocean and unprotected coastal habitats, characterized by exposure to wave action, tidal fluctuation, and ocean currents as well as systems that largely resemble these. Water in the marine biome is generally within the salinity range of seawater: 30 to 38 ppt.
has db xref: ISBN-10:0618455043
has db xref: MA:ma
has db xref: ORCID:0000-0002-4366-3088
has db xref: https://en.wikipedia.org/wiki/Ocean

rock
type: Class
subclass of: solid environmental material
subclass of: Restriction
  on property: has quality
  some values from: hard
disjoint with: mineral material
IAO_0000115: A rock is a naturally occurring solid aggregate of one or more minerals or mineraloids.
has db xref: EcoLexicon:rock
has db xref: FTT:1010
has db xref: FTT:145
has db xref: Geonames:T.RK
has db xref: Geonames:T.RKS
has db xref: SWEETRealm:Rock
has db xref: TGN:21444
has db xref: https://en.wikipedia.org/wiki/Rock
has OBO namespace: ENVO
id: ENVO:00001995
comment: From https://en.wikipedia.org/wiki/ [A mineral] is different from a rock, which can be an aggregate of minerals or non-minerals and does not have a specific chemical composition. The exact definition of a mineral is under debate, especially with respect to the requirement a valid species be abiogenic, and to a lesser extent with regards to it having an ordered atomic structure.

Axiom
annotated source: rock
annotated property: IAO_0000115
annotated target: A rock is a naturally occurring solid aggregate of one or more minerals or mineraloids.
has db xref: MA:ma
has db xref: https://en.wikipedia.org/wiki/Rock_(geology)

soil
type: Class
subclass of: environmental material
subclass of: Restriction
  on property: has part
  some values from: clay
subclass of: Restriction
  on property: has part
  some values from: silt
subclass of: Restriction
  on property: has part
  some values from: sand
subclass of: Restriction
  on property: has part
  some values from: organic material
subclass of: Restriction
  on property: has part
  some values from: mineral material
subclass of: Restriction
  on property: has part
  some values from: Class
    intersection of: chemical entity
    intersection of: Restriction
      on property: has role
      some values from: nutrient
subclass of: Restriction
  on property: has quality
  some values from: porous
IAO_0000115: Soil is an environmental material which is primarily composed of minerals, varying proportions of sand, silt, and clay, organic material such as humus, gases, liquids, and a broad range of resident micro- and macroorganisms.
IAO_0000116: The various 'has part' and 'has quality' relations may not hold true for all soils; however, I have yet to find counter examples. Require input from a pedologist or similar. [pbuttigieg]
has broad synonym: regolith
has db xref: LTER:535
has db xref: SPIRE:Soil
has db xref: SWEETRealm:Soil
has db xref: https://en.wikipedia.org/wiki/Soil
in subset: EnvO-Lite-GSC
comment: 'In engineering terms, soil is referred to as regolith, or loose rock material that lies above the 'solid geology'. Soil is commonly referred to as "earth" or "dirt"; technically, the term "dirt" should be restricted to displaced soil.' https://en.wikipedia.org/wiki/Soil " The upper limit of soil is the boundary between soil and air, shallow water, live plants, or plant materials that have not begun to decompose. Areas are not considered to have soil if the surface is permanently covered by water too deep (typically more than 2.5 meters) for the growth of rooted plants. The lower boundary that separates soil from the nonsoil underneath is most difficult to define. Soil consists of horizons near the Earth's surface that, in contrast to the underlying parent material, have been altered by the interactions of climate, relief, and living organisms over time. Commonly, soil grades at its lower boundary to hard rock or to earthy materials virtually devoid of animals, roots, or other marks of biological activity. For purposes of classification, the lower boundary of soil is arbitrarily set at 200 cm." Soil taxonomy, 2nd Ed., quoted in http://www.nrcs.usda.gov/wps/portal/nrcs/detail/soils/edu/?cid=nrcs142p2_054280

Axiom
annotated source: soil
annotated property: IAO_0000115
annotated target: Soil is an environmental material which is primarily composed of minerals, varying proportions of sand, silt, and clay, organic material such as humus, gases, liquids, and a broad range of resident micro- and macroorganisms.
has db xref: https://en.wikipedia.org/wiki/Soil

marine water body
type: Class
subclass of: marine pelagic feature
subclass of: lentic water body
subclass of: hydroform
subclass of: Restriction
  on property: part of
  some values from: marine biome
IAO_0000115: A significant accumulation of water which is part of a marine biome.
has exact synonym: body of marine water
has exact synonym: marine waterbody
comment: Ideas like "significant" are fuzzy and need to be modelled more accurately. The definition is a candidate for review.

slope
type: Class
subclass of: agronomic land element
subclass of: Restriction
  on property: part of
  some values from: elevation
subclass of: Restriction
  on property: part of
  some values from: depression
subclass of: Restriction
  on property: has quality
  some values from: sloped
IAO_0000115: A solid astronomical body part which is part of the planetary surface between the peak of an elevation or the bottom of a depression and relatively flat surrounding land.
has db xref: EcoLexicon:slope
has db xref: SWEETRealm:Slope
has db xref: https://en.wikipedia.org/wiki/Slope
has related synonym: flank
has related synonym: side

Axiom
annotated source: slope
annotated property: IAO_0000115
annotated target: A solid astronomical body part which is part of the planetary surface between the peak of an elevation or the bottom of a depression and relatively flat surrounding land.
has db xref: MA:ma

air
type: Class
subclass of: gaseous environmental material
subclass of: Restriction
  on property: has part
  some values from: dioxygen
subclass of: Restriction
  on property: has part
  some values from: carbon dioxide
subclass of: Restriction
  on property: has part
  some values from: argon molecular entity
subclass of: Restriction
  on property: has part
  some values from: water vapour
subclass of: Restriction
  on property: composed primarily of
  some values from: dinitrogen
IAO_0000115: The mixture of gases (roughly (by molar content/volume: 78% nitrogen, 20.95% oxygen, 0.93% argon, 0.038% carbon dioxide, trace amounts of other gases, and a variable amount (average around 1%) of water vapor) that surrounds the planet Earth.
has db xref: EcoLexicon:air
has db xref: LTER:18
has db xref: SWEETRealm:Air
has db xref: https://en.wikipedia.org/wiki/Air
in subset: EnvO-Lite-GSC
in subset: envoPolar

Axiom
annotated source: air
annotated property: IAO_0000115
annotated target: The mixture of gases (roughly (by molar content/volume: 78% nitrogen, 20.95% oxygen, 0.93% argon, 0.038% carbon dioxide, trace amounts of other gases, and a variable amount (average around 1%) of water vapor) that surrounds the planet Earth.
has db xref: https://en.wikipedia.org/wiki/Air

liquid water
type: Class
subclass of: liquid environmental material
subclass of: Restriction
  on property: composed primarily of
  some values from: water
IAO_0000115: An environmental material primarily composed of dihydrogen oxide in its liquid form.
has broad synonym: water
has db xref: EcoLexicon:water
has db xref: LTER:617
has db xref: https://en.wikipedia.org/wiki/Water

Axiom
annotated source: liquid water
annotated property: IAO_0000115
annotated target: An environmental material primarily composed of dihydrogen oxide in its liquid form.
has db xref: MA:ma

sediment
type: Class
subclass of: environmental material
subclass of: Restriction
  on property: has quality
  some values from: porous
subclass of: Restriction
  on property: has quality
  some values from: granular
IAO_0000115: Sediment is an environmental substance comprised of any particulate matter that can be transported by fluid flow and which eventually is deposited as a layer of solid particles on the bedor bottom of a body of water or other liquid.
has db xref: EcoLexicon:sediment
has db xref: EcoLexicon:sedimentation
has db xref: LTER:492
has db xref: LTER:493
has db xref: SWEETRealm:Sediment
has db xref: https://en.wikipedia.org/wiki/Sediment
in subset: EnvO-Lite-GSC
in subset: envoPolar
comment: It is recommended to use a combination of sediment terms to describe a more specific sediment type.

Axiom
annotated source: sediment
annotated property: IAO_0000115
annotated target: Sediment is an environmental substance comprised of any particulate matter that can be transported by fluid flow and which eventually is deposited as a layer of solid particles on the bedor bottom of a body of water or other liquid.
has db xref: https://en.wikipedia.org/wiki/Sediment

saline water
type: Class
subclass of: liquid water
subclass of: Restriction
  on property: has quality
  some values from: increased osmolarity
subclass of: Restriction
  on property: has increased levels of
  some values from: sodium chloride
IAO_0000115: Water which contains a significant concentration of dissolved salts.
has db xref: EcoLexicon:saltwater
has db xref: SWEETRealm:SalineWater
has db xref: SWEETRealm:SaltWater
has db xref: https://en.wikipedia.org/wiki/Saline_water
has exact synonym: salt water
comment: The threshold salt concentration for classifying water as saline varies, but typically begins at about 1,000 to 3,000 parts salt per million parts water or 0.1–0.3% salt by weight.

aquatic biome
type: Class
subclass of: biome
subclass of: Restriction
  on property: determined by
  some values from: water body
IAO_0000118: A biome which has its properties and composition determined by a water body and within which most members of resident ecological communities have adapted to life in or on water.
has db xref: LTER:41

sea water
type: Class
equivalent class: Class
  intersection of: saline water
  intersection of: Restriction
    on property: part of
    some values from: Class
      union of: ocean
      union of: sea
subclass of: saline water
subclass of: Restriction
  on property: part of
  some values from: Class
    union of: ocean
    union of: sea
IAO_0000115: Water which has physicochemical properties that have been determined by the processes occuring in a sea or ocean.
IAO_0000116: When we have more classes representing the various processes which make seawater seawater, we can further axiomatise this class.
has db xref: EcoLexicon:sea_water
has db xref: LTER:701
has db xref: SWEETRealm:SeaWater
has db xref: https://en.wikipedia.org/wiki/Sea_water
has exact synonym: ocean water
has exact synonym: seawater
comment: This definition refers to water that is actually in a sea or ocean. This water may have a wide range of salinity levels.

environmental feature
type: Class
equivalent class: Class
  intersection of: material entity
  intersection of: Restriction
    on property: determines
    some values from: environmental system
subclass of: material entity
subclass of: Restriction
  on property: determines
  some values from: environmental system
IAO_0000115: A material entity which determines an environmental system.
has OBO namespace: ENVO
id: ENVO:00002297
comment: A material entity determines an environmental system when its removal would cause the collapse of that system. For example, a seamount determines a seamount environment, acting as its 'hub'. This class is currently being aligned to the Basic Formal Ontology. Following this alignment, its definition and the definitions of its subclasses will be revised.

Axiom
annotated source: environmental feature
annotated property: IAO_0000115
annotated target: A material entity which determines an environmental system.
has db xref: DOI:10.1186/2041-1480-4-43
has db xref: NM:nm
has db xref: ORCID:0000-0002-4366-3088

clay
type: Class
subclass of: environmental material
subclass of: Restriction
  on property: has quality
  some values from: porous
disjoint with: silt
IAO_0000115: A group of hydrous aluminium phyllosilicate (phyllosilicates being a subgroup of silicate minerals) minerals (see clay minerals), that are typically less than 2 micrometres in diameter. Clay consists of a variety of phyllosilicate minerals rich in silicon and aluminium oxides and hydroxides which include variable amounts of structural water.
has db xref: EcoLexicon:clay
has db xref: SWEETRealm:Clay
has db xref: https://en.wikipedia.org/wiki/Clay

Axiom
annotated source: clay
annotated property: IAO_0000115
annotated target: A group of hydrous aluminium phyllosilicate (phyllosilicates being a subgroup of silicate minerals) minerals (see clay minerals), that are typically less than 2 micrometres in diameter. Clay consists of a variety of phyllosilicate minerals rich in silicon and aluminium oxides and hydroxides which include variable amounts of structural water.
has db xref: https://en.wikipedia.org/wiki/Clay

enriched soil
type: Class
equivalent class: Class
  intersection of: soil
  intersection of: Restriction
    on property: has increased levels of
    some values from: material entity
subclass of: soil
subclass of: Restriction
  on property: has increased levels of
  some values from: material entity
IAO_0000115: A portion of enriched soil is a portion of soil with elevated levels of some material entity.
has OBO namespace: ENVO
id: ENVO:00003082
comment: This could be demoted to an inferred class if issues with double inheritance arise.

field soil
type: Class
equivalent class: Class
  intersection of: soil
  intersection of: Restriction
    on property: located in
    some values from: agricultural field
subclass of: soil
subclass of: Restriction
  on property: located in
  some values from: agricultural field

environmental material
type: Class
subclass of: fiat object
IAO_0000115: A portion of environmental material is a fiat object part which forms the medium or part of the medium of an environmental system.
IAO_0000115: A portion of environmental material is a fiat object which forms the medium or part of the medium of an environmental system.
IAO_0000412: envo.owl
has exact synonym: portion of environmental material
comment: Everything under this parent must be a mass noun. All subclasses are to be understood as being composed primarily of the named entity, rather than restricted to that entity. For example, "ENVO:water" is to be understood as "environmental material composed primarly of some CHEBI:water". This class is currently being aligned to the Basic Formal Ontology. Following this alignment, its definition and the definitions of its subclasses will be revised.

Axiom
annotated source: environmental material
annotated property: IAO_0000115
annotated target: A portion of environmental material is a fiat object part which forms the medium or part of the medium of an environmental system.
has db xref: DOI:10.1186/2041-1480-4-43
has db xref: MA:ma
has db xref: ORCID:0000-0002-4366-3088
has db xref: URL:http://ontology.buffalo.edu/smith/articles/niches.html

Axiom
annotated source: environmental material
annotated property: IAO_0000115
annotated target: A portion of environmental material is a fiat object which forms the medium or part of the medium of an environmental system.
has db xref: DOI:10.1186/2041-1480-4-43
has db xref: MA:ma
has db xref: ORCID:0000-0002-4366-3088
has db xref: URL:http://ontology.buffalo.edu/smith/articles/niches.html

surface layer
type: Class
subclass of: layer
IAO_0000115: A layer of some material entity which is adjacent to one or more of its external boundaries and directly interacts with its immediate surroundings.
has db xref: EcoLexicon:surface
has db xref: http://sweetontology.net/reprSpaceGeometry/Surface
has db xref: https://en.wikipedia.org/wiki/Surface
comment: This class is distinct from a geometric surface, which is two-dimensional. The idea of "uppermost" may be problematic. Further, the definition of layer (the superclass of surface in rev 133) references surface. This may be another issue. Perhaps this can be made into an inferred class using 'bounding layer of' some material entity, note that 'bounding layer' implies containment, which may not be valid here.

Axiom
annotated source: surface layer
annotated property: IAO_0000115
annotated target: A layer of some material entity which is adjacent to one or more of its external boundaries and directly interacts with its immediate surroundings.
has db xref: URL:http://www.merriam-webster.com/dictionary/surface

aerosol
type: Class
subclass of: environmental material
subclass of: Restriction
  on property: has part
  some values from: gaseous environmental material
subclass of: Restriction
  on property: has part
  some values from: Class
    intersection of: particulate matter
    intersection of: Restriction
      on property: surrounded by
      some values from: gaseous environmental material
subclass of: Restriction
  on property: has quality
  some values from: amorphous
IAO_0000115: Airborne solid particles (also called dust or particulate matter (PM)) or liquid droplets.
has db xref: EcoLexicon:aerosol
has db xref: SWEETRealm:Aerosol
in subset: envoAtmo
comment: Should connect to PATO as "quality of an aerosol"

Axiom
annotated source: aerosol
annotated property: IAO_0000115
annotated target: Airborne solid particles (also called dust or particulate matter (PM)) or liquid droplets.
has db xref: https://en.wikipedia.org/wiki/Aerosol

silt
type: Class
subclass of: environmental material
subclass of: Restriction
  on property: has quality
  some values from: porous
subclass of: Restriction
  on property: has quality
  some values from: granular
disjoint with: sand
IAO_0000115: Silt is granular material of a size somewhere between sand and clay whose mineral origin is quartz and feldspar.
has db xref: EcoLexicon:silt
has db xref: SWEETRealm:Silt
has db xref: https://en.wikipedia.org/wiki/Silt
comment: https://en.wikipedia.org/wiki/ In the Udden-Wentworth scale (due to Krumbein), silt particles range between 0.0039 to 0.0625 mm, larger than clay but smaller than sand particles. ISO 14688 grades silts between 0.002 mm and 0.063 mm. In actuality, silt is chemically distinct from clay, and unlike clay, grains of silt are approximately the same size in all dimensions; furthermore, their size ranges overlap. Clays are formed from thin plate-shaped particles held together by electrostatic forces, so present a cohesion. According to the U.S. Department of Agriculture Soil Texture Classification system, the sand-silt distinction is made at the 0.05 mm particle size. The USDA system has been adopted by the Food and Agriculture Organization (FAO). In the Unified Soil Classification System (USCS) and the AASHTO Soil Classification system, the sand-silt distinction is made at the 0.075 mm particle size (i.e., material passing the #200 sieve). Silts and clays are distinguished mechanically by their plasticity.

Axiom
annotated source: silt
annotated property: IAO_0000115
annotated target: Silt is granular material of a size somewhere between sand and clay whose mineral origin is quartz and feldspar.
has db xref: https://en.wikipedia.org/wiki/Silt

sand
type: Class
subclass of: environmental material
subclass of: Restriction
  on property: derives from
  some values from: rock
IAO_0000115: A naturally occurring granular material composed of finely divided rock and mineral particles.
has db xref: EcoLexicon:sand
has db xref: LTER:484
has db xref: SWEETRealm:Sand
has db xref: https://en.wikipedia.org/wiki/Sand
has OBO namespace: ENVO
id: ENVO:01000017

Axiom
annotated source: sand
annotated property: IAO_0000115
annotated target: A naturally occurring granular material composed of finely divided rock and mineral particles.
has db xref: https://en.wikipedia.org/wiki/Sand

marine pelagic biome
type: Class
subclass of: marine biome
subclass of: Restriction
  on property: has part
  some values from: marine water body
IAO_0000115: The marine pelagic biome (pelagic meaning open sea) is that of the marine water column, from the surface to the greatest depths.
created by: ORCID:0000-0002-4366-3088
creation date: 2010-03-15T11:17:06Z
has OBO namespace: ENVO
id: ENVO:01000023
in subset: envoPolar

Axiom
annotated source: marine pelagic biome
annotated property: IAO_0000115
annotated target: The marine pelagic biome (pelagic meaning open sea) is that of the marine water column, from the surface to the greatest depths.
has db xref: ISBN:0750633840

neritic pelagic zone biome
type: Class
subclass of: marine pelagic biome
disjoint with: oceanic pelagic zone biome
IAO_0000115: The neritic epipelagic zone biome comprises the marine water column above a continental shelf.
created by: ORCID:0000-0002-4366-3088
creation date: 2010-03-15T11:19:19Z
has OBO namespace: ENVO
id: ENVO:01000032

Axiom
annotated source: neritic pelagic zone biome
annotated property: IAO_0000115
annotated target: The neritic epipelagic zone biome comprises the marine water column above a continental shelf.
has db xref: ISBN:044482619X
has db xref: ISBN:0750633840
has db xref: ORCID:0000-0002-4366-3088

oceanic pelagic zone biome
type: Class
subclass of: marine pelagic biome
IAO_0000115: The oceanic epipelagic zone biome comprises the marine water column offshore, beyond a continental shelf.
created by: ORCID:0000-0002-4366-3088
creation date: 2010-03-15T11:19:19Z
has OBO namespace: ENVO
id: ENVO:01000033

Axiom
annotated source: oceanic pelagic zone biome
annotated property: IAO_0000115
annotated target: The oceanic epipelagic zone biome comprises the marine water column offshore, beyond a continental shelf.
has db xref: ISBN:044482619X
has db xref: ISBN:0750633840
has db xref: ORCID:0000-0002-4366-3088

oceanic sea surface microlayer biome
type: Class
subclass of: oceanic pelagic zone biome
IAO_0000115: The oceanic sea surface microlayer (SML) biome comprises the top 1000 micrometers of the marine surface waters occurring offshore, away from a continental shelf. It is the boundary layer where all exchange occurs between the atmosphere and the ocean. The chemical, physical, and biological properties of the SML differ greatly from the sub-surface water just a few centimeters beneath.
created by: ORCID:0000-0002-4366-3088
creation date: 2010-03-15T11:21:03Z
has OBO namespace: ENVO
id: ENVO:01000034

Axiom
annotated source: oceanic sea surface microlayer biome
annotated property: IAO_0000115
annotated target: The oceanic sea surface microlayer (SML) biome comprises the top 1000 micrometers of the marine surface waters occurring offshore, away from a continental shelf. It is the boundary layer where all exchange occurs between the atmosphere and the ocean. The chemical, physical, and biological properties of the SML differ greatly from the sub-surface water just a few centimeters beneath.
has db xref: ORCID:0000-0002-4366-3088
has db xref: https://en.wikipedia.org/wiki/Sea_surface_microlayer

neritic sea surface microlayer biome
type: Class
subclass of: neritic pelagic zone biome
IAO_0000115: The neritic sea surface microlayer (SML) biome comprises the top 1000 micrometers of marine surface waters occurring above a continental shelf. It is the boundary layer where all exchange occurs between the atmosphere and the ocean. The chemical, physical, and biological properties of the SML differ greatly from the sub-surface water just a few centimeters beneath.
created by: ORCID:0000-0002-4366-3088
creation date: 2010-03-15T11:22:09Z
has OBO namespace: ENVO
id: ENVO:01000041

Axiom
annotated source: neritic sea surface microlayer biome
annotated property: IAO_0000115
annotated target: The neritic sea surface microlayer (SML) biome comprises the top 1000 micrometers of marine surface waters occurring above a continental shelf. It is the boundary layer where all exchange occurs between the atmosphere and the ocean. The chemical, physical, and biological properties of the SML differ greatly from the sub-surface water just a few centimeters beneath.
has db xref: ORCID:0000-0002-4366-3088
has db xref: https://en.wikipedia.org/wiki/Sea_surface_microlayer

marine pelagic feature
type: Class
equivalent class: Class
  intersection of: astronomical body part
  intersection of: Class
    union of: Restriction
      on property: part of
      some values from: marine water body
    union of: Restriction
      on property: composed primarily of
      some values from: sea water
subclass of: hydrographic feature
IAO_0000115: A prominent or distinctive aspect, quality, or characteristic of environments occurring within the marine water column.
created by: ORCID:0000-0002-4366-3088
creation date: 2010-03-16T12:10:50Z
in subset: envoPolar

Axiom
annotated source: marine pelagic feature
annotated property: IAO_0000115
annotated target: A prominent or distinctive aspect, quality, or characteristic of environments occurring within the marine water column.
has db xref: ISBN-10:0618455043
has db xref: ORCID:0000-0002-4366-3088

particulate matter
type: Class
subclass of: environmental material
subclass of: Class
  intersection of: Restriction
    on property: surrounded by
    some values from: Class
      union of: gaseous environmental material
      union of: liquid environmental material
  intersection of: Restriction
    on property: composed primarily of
    some values from: Class
      union of: solid environmental material
      union of: liquid environmental material
IAO_0000115: Particulate material is an environmental material which is composed of microscopic portions of solid or liquid material suspended in another environmental material.
IAO_0000116: Subclasses should be assigned by inference.
in subset: envoAtmo
in subset: envoPolar

organic material
type: Class
equivalent class: Class
  intersection of: environmental material
  intersection of: Restriction
    on property: composed primarily of
    some values from: biomacromolecule
subclass of: environmental material
subclass of: Restriction
  on property: composed primarily of
  some values from: biomacromolecule
IAO_0000115: Environmental material derived from living organisms and composed primarily of one or more biomacromolecules.
created by: ORCID:0000-0002-4366-3088
creation date: 2010-03-20T08:40:04Z
has db xref: EcoLexicon:organic_material
has exact synonym: biomass

Axiom
annotated source: organic material
annotated property: IAO_0000115
annotated target: Environmental material derived from living organisms and composed primarily of one or more biomacromolecules.
has db xref: ISBN-10:0618455043
has db xref: ORCID:0000-0002-4366-3088

shrubland biome
type: Class
subclass of: terrestrial biome
IAO_0000115: A shrubland biome is a terrestrial biome which includes, across its entire spatial extent, dense groups of shrubs.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-04-07T14:26:46Z
comment: Preliminary definition.

environmental condition
type: Class
subclass of: physical quality
IAO_0000114: organizational term
IAO_0000115: An environmental condition is a range of a determinate quality or combination of qualities that are present in an environmental system.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-04-07T14:35:18Z
in subset: envoPolar
comment: A condition defines a restricted range of a given quality or combination of qualities. If an environment class, E, has_condition C, then all qualities listed in C are restricted to the ranges defined in C in E. This is not intended as a logical conditional.

Axiom
annotated source: environmental condition
annotated property: IAO_0000115
annotated target: An environmental condition is a range of a determinate quality or combination of qualities that are present in an environmental system.
has db xref: DOI:10.1186/2041-1480-4-43

montane shrubland biome
type: Class
subclass of: shrubland biome
subclass of: Restriction
  on property: has quality
  some values from: montane
IAO_0000115: A montane shrubland biome is a shrubland biome which occurs in regions elevated above sea level and which has community structure determined by elevation-dependent environmental conditions.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-04-07T14:40:32Z
in subset: wwfBiome
comment: Preliminary definition.

environmental system
type: Class
subclass of: system
IAO_0000115: A system which has the disposition to environ one or more material entities.
creation date: 2013-09-23T16:04:08Z
has db xref: EcoLexicon:environment
has exact synonym: environment
comment: In ENVO's alignment with the Basic Formal Ontology, this class is being considered as a subclass of a proposed BFO class "system". The relation "environed_by" is also under development. Roughly, a system which includes a material entity (at least partially) within its site and causally influences that entity may be considered to environ it. Following the completion of this alignment, this class' definition and the definitions of its subclasses will be revised.

Axiom
annotated source: environmental system
annotated property: IAO_0000115
annotated target: A system which has the disposition to environ one or more material entities.
has db xref: DOI:10.1186/2041-1480-4-43

mineral material
type: Class
equivalent class: Class
  intersection of: environmental material
  intersection of: Restriction
    on property: composed primarily of
    some values from: mineral
subclass of: solid environmental material
subclass of: Restriction
  on property: composed primarily of
  some values from: mineral
IAO_0000115: A mineral material is an environmental material which is primarily composed of some substance that is naturally occurring, solid and stable at room temperature, representable by a chemical formula, usually abiogenic, and that has an ordered atomic structure.
IAO_0000116: Look for "mineral" in a chemical or geochemical ontology to formalise the composed primarily of link. From https://en.wikipedia.org/wiki/ [A mineral] is different from a rock, which can be an aggregate of minerals or non-minerals and does not have a specific chemical composition. The exact definition of a mineral is under debate, especially with respect to the requirement a valid species be abiogenic, and to a lesser extent with regards to it having an ordered atomic structure.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-10-05T12:37:41Z
has db xref: LTER:341

Axiom
annotated source: mineral material
annotated property: IAO_0000115
annotated target: A mineral material is an environmental material which is primarily composed of some substance that is naturally occurring, solid and stable at room temperature, representable by a chemical formula, usually abiogenic, and that has an ordered atomic structure.
has db xref: https://en.wikipedia.org/wiki/Mineral

water vapour
type: Class
subclass of: gaseous environmental material
subclass of: Restriction
  on property: composed primarily of
  some values from: water
IAO_0000115: Water vapour is a vapour which is the gas phase of water.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-10-10T07:58:18Z
has exact synonym: aqueous vapor
has exact synonym: aqueous vapour
has exact synonym: water vapor
has OBO namespace: ENVO
id: ENVO:01000266
comment: Perhaps a better relation between water vapour and water can be found in or added to RO?

Axiom
annotated source: water vapour
annotated property: IAO_0000115
annotated target: Water vapour is a vapour which is the gas phase of water.
has db xref: https://en.wikipedia.org/wiki/Water_vapor

Axiom
annotated source: water vapour
annotated property: hasExactSynonym
annotated target: aqueous vapor
has db xref: https://en.wikipedia.org/wiki/Water_vapor

Axiom
annotated source: water vapour
annotated property: hasExactSynonym
annotated target: aqueous vapour
has db xref: https://en.wikipedia.org/wiki/Water_vapor

Axiom
annotated source: water vapour
annotated property: hasExactSynonym
annotated target: water vapor
has db xref: https://en.wikipedia.org/wiki/Water_vapor

atmosphere
type: Class
subclass of: layer
subclass of: gaseous astronomical body part
IAO_0000115: An atmosphere is a layer of gases surrounding a material body of sufficient mass that is held in place by the gravity of the body.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-10-10T08:14:50Z
has db xref: LTER:48

Axiom
annotated source: atmosphere
annotated property: IAO_0000115
annotated target: An atmosphere is a layer of gases surrounding a material body of sufficient mass that is held in place by the gravity of the body.
has db xref: https://en.wikipedia.org/wiki/Atmosphere
has db xref: https://en.wikipedia.org/wiki/Physical_geography

atmospheric water vapour
type: Class
equivalent class: Class
  intersection of: water vapour
  intersection of: Restriction
    on property: part of
    some values from: atmosphere
subclass of: water vapour
subclass of: Restriction
  on property: part of
  some values from: atmosphere
subclass of: Restriction
  on property: has role
  some values from: greenhouse gas
IAO_0000115: Atmospheric water vapour is water vapour that is part of an atmosphere.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-10-10T08:22:07Z
has exact synonym: atmospheric water vapor
has OBO namespace: ENVO
id: ENVO:01000268
in subset: envoPolar

Axiom
annotated source: atmospheric water vapour
annotated property: IAO_0000115
annotated target: Atmospheric water vapour is water vapour that is part of an atmosphere.
has db xref: https://en.wikipedia.org/wiki/Water_vapor

Axiom
annotated source: atmospheric water vapour
annotated property: hasExactSynonym
annotated target: atmospheric water vapor
has db xref: https://en.wikipedia.org/wiki/Water_vapor

ecoregion
type: Class
subclass of: environmental zone
subclass of: Restriction
  on property: part of
  some values from: ecozone
IAO_0000115: A large unit of land or water containing a geographically distinct assemblage of species, natural communities, and environmental conditions.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-10-12T17:21:09Z
in subset: envoPolar
comment: Unlike biomes, ecoregions are geographically defined entities. ENVO's sister project, GAZ, contains terms for instances of ecoregions (e.g. Beringia lowland tundra). Requests for new terms should be directed to GAZ. ENVO will only contain this top-level class. The class' definition is preliminary and will be aligned to BFO.

Axiom
annotated source: ecoregion
annotated property: IAO_0000115
annotated target: A large unit of land or water containing a geographically distinct assemblage of species, natural communities, and environmental conditions.
has db xref: DOI:10.1641/0006-3568(2001)051[0933:TEOTWA]2.0.CO;2
has db xref: URL:http://worldwildlife.org/biomes

water ice
type: Class
subclass of: solid environmental material
subclass of: Restriction
  on property: composed primarily of
  some values from: liquid water
IAO_0000115: Ice is water frozen into a solid state. It can appear transparent or opaque bluish-white color, depending on the presence of impurities or air inclusions. The addition of other materials such as soil may further alter its appearance.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-10-13T12:01:28Z
has db xref: LTER:262
has related synonym: ice
in subset: envoPolar

Axiom
annotated source: water ice
annotated property: IAO_0000115
annotated target: Ice is water frozen into a solid state. It can appear transparent or opaque bluish-white color, depending on the presence of impurities or air inclusions. The addition of other materials such as soil may further alter its appearance.
has db xref: https://en.wikipedia.org/wiki/Ice

Axiom
annotated source: water ice
annotated property: hasRelatedSynonym
annotated target: ice
has db xref: http://www.eionet.europa.eu/gemet/concept/4131

ecozone
type: Class
subclass of: environmental zone
subclass of: Restriction
  on property: part of
  some values from: biosphere
IAO_0000115: Ecozones delineate large areas of a planetary surface within which organisms have been evolving in relative isolation over long periods of time, separated from one another by geographic features, such as oceans, broad deserts, or high mountain ranges, that constitute barriers to migration.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-10-13T18:32:46Z
in subset: envoPolar
comment: ENVO contains this top-level class, but all instances will be in GAZ. The definition is preliminary and will be aligned to BFO. https://en.wikipedia.org/wiki/ Ecozones correspond to the floristic kingdoms of botany or zoogeographic regions of zoology. Ecozones are characterized by the evolutionary history of the organisms they contain. They are distinct from biomes, also known as major habitat types, which are divisions of the Earth's surface based on life form, or the adaptation of plants and animals to climatic, soil, and other conditions. Biomes are characterized by similar climax vegetation. Each ecozone may include a number of different biomes. A tropical moist broadleaf forest in Central America, for example, may be similar to one in New Guinea in its vegetation type and structure, climate, soils, etc., but these forests are inhabited by plants and animals with very different evolutionary histories.

Axiom
annotated source: ecozone
annotated property: IAO_0000115
annotated target: Ecozones delineate large areas of a planetary surface within which organisms have been evolving in relative isolation over long periods of time, separated from one another by geographic features, such as oceans, broad deserts, or high mountain ranges, that constitute barriers to migration.
has db xref: https://en.wikipedia.org/wiki/ecozone

layer
type: Class
subclass of: geographic feature
subclass of: Restriction
  on property: has quality
  some values from: laminar
IAO_0000115: A layer is a quantity of some material which is spatially continuous, has comparable thickness, and usually covers some surface.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-10-15T16:42:02Z
in subset: envoPolar
comment: Preliminary definition.

Axiom
annotated source: layer
annotated property: IAO_0000115
annotated target: A layer is a quantity of some material which is spatially continuous, has comparable thickness, and usually covers some surface.
has db xref: Wiktionary:layer

lake layer
type: Class
equivalent class: Class
  intersection of: aquatic layer
  intersection of: Restriction
    on property: part of
    some values from: lake
subclass of: aquatic layer
subclass of: hydroform
subclass of: Restriction
  on property: part of
  some values from: lake
IAO_0000115: A layer which is part of a lake.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-10-15T16:57:43Z
has OBO namespace: ENVO
id: ENVO:01000283
in subset: envoPolar
comment: Note that this class does not contain metalimnion as a subclass. The metaliminon is classified as a thermocline.

ice mass
type: Class
equivalent class: Class
  intersection of: object
  intersection of: Restriction
    on property: composed primarily of
    some values from: water ice
subclass of: object
subclass of: Restriction
  on property: part of
  some values from: cryosphere
subclass of: Restriction
  on property: composed primarily of
  some values from: water ice
IAO_0000115: A mass of ice.
IAO_0000116: Class should be populated by inference and asserted subclasses redistributed.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-10-15T19:49:11Z
in subset: envoPolar

marine layer
type: Class
equivalent class: Class
  intersection of: aquatic layer
  intersection of: Restriction
    on property: part of
    some values from: Class
      union of: ocean
      union of: sea
subclass of: marine pelagic feature
subclass of: aquatic layer
subclass of: hydroform
subclass of: Restriction
  on property: part of
  some values from: marine water body
subclass of: Restriction
  on property: part of
  some values from: Class
    union of: ocean
    union of: sea
subclass of: Restriction
  on property: composed primarily of
  some values from: sea water
IAO_0000115: A layer that is part of a marine water body.
created by: ORCID:0000-0002-4366-3088
in subset: envoMarine
in subset: envoPolar

Axiom
annotated source: marine layer
annotated property: IAO_0000115
annotated target: A layer that is part of a marine water body.
has db xref: ORCID:0000-0002-4366-3088

endolithic environment
type: Class
equivalent class: Class
  intersection of: environmental system
  intersection of: Restriction
    on property: surrounded by
    some values from: rock
subclass of: environmental system
subclass of: Restriction
  on property: surrounded by
  some values from: rock
IAO_0000115: An endolithic environment is an environment that exists within solid rock.

saline water environment
type: Class
equivalent class: Class
  intersection of: aquatic environment
  intersection of: Restriction
    on property: determined by
    some values from: saline water
subclass of: aquatic environment
subclass of: saline environment
subclass of: Restriction
  on property: determined by
  some values from: saline water
IAO_0000115: An environmental system which has its properties and dynamics determined by saline water.
IAO_0000118: Water (saline)
in subset: envoEmpo
in subset: envoOmics
in subset: envoPolar

Axiom
annotated source: saline water environment
annotated property: IAO_0000118
annotated target: Water (saline)
has db xref: http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/

cold environment
type: Class
equivalent class: Class
  intersection of: environmental system
  intersection of: Restriction
    on property: has quality
    some values from: decreased temperature
subclass of: environmental system
subclass of: Restriction
  on property: has quality
  some values from: decreased temperature
IAO_0000115: An environment which has a lower temperature than some local or global average.
in subset: envoPolar
comment: The definition of the deprecated 'cold temperature habitat' class, which this class was derived from, quotes an upper threshold of 15 degrees Celsius for 'coldness'.

anthropogenic environment
type: Class
equivalent class: Class
  intersection of: environmental system
  intersection of: Restriction
    on property: determined by
    some values from: Restriction
      on property: output of
      some values from: anthropisation
subclass of: environmental system
subclass of: Restriction
  on property: determined by
  some values from: Restriction
    on property: output of
    some values from: anthropisation
IAO_0000115: An anthropogenic environment is an environmental system which is the product of human activity.
comment: Unsatisfactory definition here. Must consider the threshold that makes an environmental system anthropogenic.

high osmolarity environment
type: Class
equivalent class: Class
  intersection of: environmental system determined by a quality
  intersection of: Restriction
    on property: has quality
    some values from: increased osmolarity
subclass of: environmental system determined by a quality
subclass of: Restriction
  on property: has quality
  some values from: increased osmolarity
IAO_0000115: A high osmolarity environment is an environment in which entities are exposed to high concentrations of solutes.

aquatic environment
type: Class
equivalent class: Class
  intersection of: environmental system
  intersection of: Restriction
    on property: determined by
    some values from: liquid water
subclass of: environmental system determined by a quality
subclass of: environmental system determined by a material
subclass of: Restriction
  on property: determined by
  some values from: liquid water
IAO_0000115: An environment whose dynamics are strongly influenced by water.

rocky slope
type: Class
equivalent class: Class
  intersection of: slope
  intersection of: Restriction
    on property: has part
    some values from: Class
      intersection of: surface layer
      intersection of: Restriction
        on property: composed primarily of
        some values from: rock
subclass of: slope
subclass of: Restriction
  on property: has part
  some values from: Class
    intersection of: surface layer
    intersection of: Restriction
      on property: composed primarily of
      some values from: rock
IAO_0000115: A rocky slope is a slope which has a surface primarily composed of rock.

marine environment
type: Class
equivalent class: Class
  intersection of: environmental system
  intersection of: Restriction
    on property: determined by
    some values from: marine water body
subclass of: environmental system
subclass of: Restriction
  on property: determined by
  some values from: marine water body
IAO_0000115: A marine environment and enviroment which is determined by a marine water body.
in subset: envoPolar

Axiom
annotated source: marine environment
annotated property: IAO_0000115
annotated target: A marine environment and enviroment which is determined by a marine water body.
has db xref: NM:nm

sea water environment
type: Class
equivalent class: Class
  intersection of: saline water environment
  intersection of: Restriction
    on property: determined by
    some values from: sea water
subclass of: saline water environment
subclass of: Restriction
  on property: determined by
  some values from: sea water
IAO_0000115: An environmental system determined by seawater.
has exact synonym: ocean water environment
in subset: envoPolar

planetary surface
type: Class
subclass of: surface of an astronomical body
subclass of: Restriction
  on property: part of
  some values from: planet
IAO_0000115: A planetary surface is a surface layer where the solid or liquid material of a planet comes into contact with an atmosphere or outer space.
comment: a useful class: this can be used to define sub-terrestrial and sub-marine entities

aquatic layer
type: Class
equivalent class: Class
  intersection of: liquid layer
  intersection of: Restriction
    on property: composed primarily of
    some values from: liquid water
subclass of: liquid layer
subclass of: Restriction
  on property: composed primarily of
  some values from: liquid water
IAO_0000115: A layer in a water mass, itself composed primarily of water.
in subset: envoPolar
comment: This class will eventually be populated by inference, and its asserted subclasses removed.

montane
type: Class
subclass of: altitudinal condition
IAO_0000115: A montane condition is an environmental condition in which an altitude range falls between mid-altitude forests and the tree line.
created by: ORCID:0000-0002-4366-3088
has db xref: LTER:350
in subset: envoPolar
comment: The exact level of the tree line varies with local climate, but typically the tree line is found where mean monthly soil temperatures never exceed 10.0 degrees C and the mean annual soil temperatures are around 6.7 degrees C. In the tropics, this region is typified by montane rain forest (above 3,000 ft) while at higher latitudes coniferous forests often dominate.

Axiom
annotated source: montane
annotated property: IAO_0000115
annotated target: A montane condition is an environmental condition in which an altitude range falls between mid-altitude forests and the tree line.
has db xref: https://en.wikipedia.org/wiki/Altitudinal_zonation

Axiom
annotated source: montane
annotated property: comment
annotated target: The exact level of the tree line varies with local climate, but typically the tree line is found where mean monthly soil temperatures never exceed 10.0 degrees C and the mean annual soil temperatures are around 6.7 degrees C. In the tropics, this region is typified by montane rain forest (above 3,000 ft) while at higher latitudes coniferous forests often dominate.
has db xref: https://en.wikipedia.org/wiki/Altitudinal_zonation

altitudinal condition
type: Class
subclass of: environmental condition
IAO_0000115: An altitudinal condition is an environmental condition in which ranges of factors such as temperature, humidity, soil composition, solar irradiation, and tree density vary with ranges in altitude.
created by: ORCID:0000-0002-4366-3088
in subset: envoPolar
comment: Depending on the latitude (and, to a lesser extent, other factors), the actual location of the zones where these conditions are in effect will change.

Axiom
annotated source: altitudinal condition
annotated property: IAO_0000115
annotated target: An altitudinal condition is an environmental condition in which ranges of factors such as temperature, humidity, soil composition, solar irradiation, and tree density vary with ranges in altitude.
has db xref: https://en.wikipedia.org/wiki/Altitudinal_zonation

field
type: Class
subclass of: astronomical body part
IAO_0000115: An unbroken expanse (as of ice)

Axiom
annotated source: field
annotated property: IAO_0000115
annotated target: An unbroken expanse (as of ice)
has db xref: http://www.merriam-webster.com/dictionary/field

vegetation layer
type: Class
equivalent class: Class
  intersection of: layer
  intersection of: Restriction
    on property: composed primarily of
    some values from: Viridiplantae
subclass of: layer
subclass of: Restriction
  on property: part of
  some values from: Class
    intersection of: ecosystem
    intersection of: Restriction
      on property: has part
      some values from: Class
        intersection of: ecological community
        intersection of: Restriction
subclass of: Restriction
  on property: composed primarily of
  some values from: Viridiplantae
IAO_0000115: A layer which is determined by a form of vegetation.
has related synonym: forest layer
has related synonym: forest stratum
has related synonym: woodland layer
has related synonym: woodland stratum
comment: Usually found in woodlands and forests.

snow
type: Class
subclass of: environmental material
subclass of: Restriction
  on property: has part
  some values from: air
subclass of: Restriction
  on property: output of
  some values from: snowfall
subclass of: Restriction
  on property: composed primarily of
  some values from: water ice
IAO_0000115: Snow is an environmental material which is primarily composed of flakes of crystalline water ice.
in subset: envoPolar

Axiom
annotated source: snow
annotated property: IAO_0000115
annotated target: Snow is an environmental material which is primarily composed of flakes of crystalline water ice.
has db xref: http://www.eionet.europa.eu/gemet/concept/7769
has db xref: https://en.wikipedia.org/wiki/Snow

environmental zone
type: Class
subclass of: site
subclass of: Restriction
  on property: part of
  some values from: environmental system
IAO_0000115: A site which has its extent determined by the presence or influence of one or more components of an environmental system or the processes occurring therein.
has related synonym: environmental area
in subset: envoPolar
comment: Formerly, this class was an experimental class and a subclass of "environmental feature". It is now aligned to BFO. The class was not obsoleted as the core semantics maintained their stability through its transition.

lentic water body
type: Class
subclass of: water body
IAO_0000115: A lentic water body is a water body in which the accumulated water, in its totality, has very little to no directed flow.

hydrological condensation process
type: Class
subclass of: condensation process
subclass of: hydrological process
subclass of: Restriction
  on property: has input
  some values from: atmospheric water vapour
subclass of: Restriction
  on property: has output
  some values from: liquid water
IAO_0000115: Hydrological condensation is a process in which atmospheric water vapour undergoes a phase transition from the gas phase to the liquid phase.
has broad synonym: condensation
in subset: envoPolar
comment: "process" is included in the label to make it clear that we are not referring to the condensed material (e.g. water droplets, window fog)

Axiom
annotated source: hydrological condensation process
annotated property: IAO_0000115
annotated target: Hydrological condensation is a process in which atmospheric water vapour undergoes a phase transition from the gas phase to the liquid phase.
has db xref: https://en.wikipedia.org/wiki/Condensation

land
type: Class
subclass of: planetary surface
subclass of: solid surface layer
subclass of: Restriction
  on property: surrounded by
  some values from: Class
    complement of: Class
      intersection of: environmental material
      intersection of: Restriction
        on property: has quality
        some values from: quality of a liquid
IAO_0000115: Land is a planetary surface that is not covered by liquid.
has related synonym: ground
comment: Land may more properly be represented as part of a planetary surface rather than a sublcass.

Axiom
annotated source: land
annotated property: IAO_0000115
annotated target: Land is a planetary surface that is not covered by liquid.
has db xref: Adpated from https://en.wikipedia.org/wiki/Planetary_surface

outer space
type: Class
subclass of: environmental feature
subclass of: environmental material
IAO_0000115: Outer space is a hard vacuum containing a low density of particles, predominantly a plasma of hydrogen and helium as well as electromagnetic radiation, magnetic fields, neutrinos, dust and cosmic rays that exists between celestial bodies.
has broad synonym: space
in subset: envoAstro

Axiom
annotated source: outer space
annotated property: IAO_0000115
annotated target: Outer space is a hard vacuum containing a low density of particles, predominantly a plasma of hydrogen and helium as well as electromagnetic radiation, magnetic fields, neutrinos, dust and cosmic rays that exists between celestial bodies.
has db xref: https://en.wikipedia.org/wiki/Outer_space

planetary crust
type: Class
subclass of: planetary structural layer
subclass of: Restriction
  on property: has quality
  some values from: quality of a solid
IAO_0000115: A planetary crust is the outermost solid shell of a rocky planet or natural satellite, which is chemically distinct from the underlying mantle.
has broad synonym: crust
comment: This class is meant to be applicable accross planets. Earth's crust would be an instance.

Axiom
annotated source: planetary crust
annotated property: IAO_0000115
annotated target: A planetary crust is the outermost solid shell of a rocky planet or natural satellite, which is chemically distinct from the underlying mantle.
has db xref: https://en.wikipedia.org/wiki/Crust_(geology)

planetary structural layer
type: Class
subclass of: layer
subclass of: Restriction
  on property: part of
  some values from: planet
IAO_0000115: A planetary structural layer is laminar part of a terrestrial planet or other rocky body large enough to have differentiation by density. Planetary layers have differing physicochemical properties and composition.
IAO_0000116: Label should be improved to match definition.

water mass
type: Class
subclass of: body of liquid
subclass of: Restriction
  on property: composed primarily of
  some values from: liquid water
IAO_0000115: A mass of water.

coast
type: Class
equivalent class: Class
  intersection of: environmental zone
  intersection of: Restriction
    on property: overlaps
    some values from: land
  intersection of: Restriction
    on property: overlaps
    some values from: Class
      union of: ocean
      union of: sea
      union of: lake
subclass of: environmental zone
subclass of: Restriction
  on property: overlaps
  some values from: land
subclass of: Restriction
  on property: overlaps
  some values from: Class
    union of: ocean
    union of: sea
    union of: lake
IAO_0000115: A coast is the area where land meets the sea, ocean, or lake.
comment: Used for both marine and lake coasts. The boundary of the coast is fuzzy and it overlaps both the water body and land in quesiton. Compared to 'shore'

Axiom
annotated source: coast
annotated property: IAO_0000115
annotated target: A coast is the area where land meets the sea, ocean, or lake.
has db xref: https://en.wikipedia.org/wiki/Coast

hydrological precipitation process
type: Class
subclass of: precipitation process
subclass of: Restriction
  on property: has input
  some values from: Class
    intersection of: Class
      intersection of: environmental material
      intersection of: Restriction
        on property: composed primarily of
        some values from: liquid water
    intersection of: Restriction
      on property: output of
      some values from: hydrological condensation process
IAO_0000115: Hydrological precipitation is a process during which any product of the condensation of atmospheric water vapour is pulled to the planetary surface by gravity.
has broad synonym: precipitation
comment: "process" is included in the label to make it clear that we are not referring to the precipitated material (e.g. snow, rain, sleet)

Axiom
annotated source: hydrological precipitation process
annotated property: IAO_0000115
annotated target: Hydrological precipitation is a process during which any product of the condensation of atmospheric water vapour is pulled to the planetary surface by gravity.
has db xref: https://en.wikipedia.org/wiki/Precipitation

condensation process
type: Class
subclass of: material congelation process
subclass of: Restriction
  on property: has input
  some values from: Class
    intersection of: environmental material
    intersection of: Restriction
      on property: has quality
      some values from: quality of a gas
IAO_0000115: Condensation is a process during which a gas undergoes a phase transition into a liquid.

Axiom
annotated source: condensation process
annotated property: IAO_0000115
annotated target: Condensation is a process during which a gas undergoes a phase transition into a liquid.
has db xref: https://en.wikipedia.org/wiki/Condensation

habitat
type: Class
subclass of: ecosystem
subclass of: Restriction
  on property: part of
  some values from: biosphere
subclass of: Restriction
  on property: determined by
  some values from: population of organisms
IAO_0000115: An environmental system which can sustain and allow the growth of an ecological population.
has db xref: EcoLexicon:habitat
has db xref: LTER:238
has db xref: SWEETRealm:Habitat
has db xref: https://en.wikipedia.org/wiki/Habitat
comment: A habitat's specificity to an ecological population differentiates it from other environment classes.

Axiom
annotated source: habitat
annotated property: IAO_0000115
annotated target: An environmental system which can sustain and allow the growth of an ecological population.
has db xref: EnvO:EnvO

aeroform
type: Class
equivalent class: Class
  intersection of: gaseous astronomical body part
  intersection of: Restriction
    on property: located in
    some values from: atmosphere
  intersection of: Restriction
    on property: composed primarily of
    some values from: Class
      union of: air
      union of: aerosol
subclass of: gaseous astronomical body part
subclass of: Restriction
  on property: located in
  some values from: atmosphere
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    union of: air
    union of: aerosol
IAO_0000115: A part of an astronomical body which is primarily composed of a continuous volume of gaseous or aerosolised material held in shape by one or more environmental processes.
IAO_0000116: This may not need to be in the atmosphere, also note that "meteor" will do much of the same work.
in subset: envoAtmo
comment: Similar, in spirit, to landform. This class may need to be split into aerosols and 'pure' volumes of gas.

gaseous environmental material
type: Class
equivalent class: Class
  intersection of: environmental material
  intersection of: Restriction
    on property: has quality
    some values from: quality of a gas
subclass of: environmental material
subclass of: Restriction
  on property: has quality
  some values from: quality of a gas
IAO_0000115: A material entity which is composed of one or more chemical entities and has neither independent shape nor volume but tends to expand indefinitely.
IAO_0000116: This class is to be populated by inference.
has narrow synonym: gas

Axiom
annotated source: gaseous environmental material
annotated property: IAO_0000115
annotated target: A material entity which is composed of one or more chemical entities and has neither independent shape nor volume but tends to expand indefinitely.
has db xref: http://www.merriam-webster.com/dictionary/gas

astronomical body
type: Class
subclass of: astronomical object
IAO_0000115: An object which is naturally occuring, bound together by gravitational or electromagnetic forces, and surrounded by space.
has related synonym: celestial body
in subset: envoAstro
comment: Astronomical bodies are usually cohesive, thus the use of the term 'object' sensu BFO 'object'.

Axiom
annotated source: astronomical body
annotated property: IAO_0000115
annotated target: An object which is naturally occuring, bound together by gravitational or electromagnetic forces, and surrounded by space.
has db xref: https://en.wikipedia.org/wiki/Astronomical_object

planet
type: Class
subclass of: astronomical body
IAO_0000115: A planet is an astronomical body orbiting a star or stellar remnant that is massive enough to be rounded by its own gravity, is not massive enough to cause thermonuclear fusion, and has cleared its neighbouring region of planetesimals.
in subset: envoAstro
in subset: envoPolar
comment: Considerable debate on the definition of planet exists.

Axiom
annotated source: planet
annotated property: IAO_0000115
annotated target: A planet is an astronomical body orbiting a star or stellar remnant that is massive enough to be rounded by its own gravity, is not massive enough to cause thermonuclear fusion, and has cleared its neighbouring region of planetesimals.
has db xref: http://solarsystem.nasa.gov/planets/whatisaplanet
has db xref: https://en.wikipedia.org/wiki/Planet

astronomical object
type: Class
subclass of: object
subclass of: environmental feature
subclass of: Restriction
  on property: has quality
  some values from: geodiversity
subclass of: Restriction
  on property: surrounded by
  some values from: outer space
subclass of: Restriction
  on property: has part
  min qualified cardinality: 1
  on class: astronomical body
IAO_0000115: An object which is composed of one or more gravitationally bound structures that are associated with a position in space.
has related synonym: celestial object
in subset: envoAstro
comment: If there is only one astronomical body involved, this class is equivalent to ENVO:01000799. This may be problematic with reasoning, but it seems to be true to the rather fuzzy definitions found thus far.

Axiom
annotated source: astronomical object
annotated property: IAO_0000115
annotated target: An object which is composed of one or more gravitationally bound structures that are associated with a position in space.
has db xref: https://en.wikipedia.org/wiki/Astronomical_object

astronomical body part
type: Class
subclass of: fiat object
subclass of: environmental feature
subclass of: Restriction
  on property: part of
  some values from: astronomical body
IAO_0000115: A material part of an astronomical body.
in subset: envoAstro
in subset: envoPolar

solid environmental material
type: Class
equivalent class: Class
  intersection of: environmental material
  intersection of: Restriction
    on property: has quality
    some values from: quality of a solid
subclass of: ice
subclass of: Restriction
  on property: has quality
  some values from: quality of a solid
IAO_0000115: An environmental material which is in a solid state.
comment: This is a defined class: its subclasses will not be asserted, but filled by inference.

liquid environmental material
type: Class
equivalent class: Class
  intersection of: environmental material
  intersection of: Restriction
    on property: has quality
    some values from: quality of a liquid
subclass of: environmental material
subclass of: Restriction
  on property: has quality
  some values from: quality of a liquid
IAO_0000115: An environmental material which is in a liquid state.
in subset: envoPolar
comment: This is a defined class: its subclasses will not be asserted, but filled by inference.

biosphere
type: Class
subclass of: astronomical body part
subclass of: ecosystem
subclass of: ENVO_01001784
subclass of: Restriction
  on property: has part
  some values from: collection of organisms
IAO_0000115: A biosphere is a part of an astronomical body which includes, as parts, all the living entities within the gravitational sphere of influence of that body, as well as the non-living and dead entities with which they interact.
IAO_0000115: A biosphere is an environmental system which includes, as parts, all the living entities within the gravitational sphere of influence of an astronomical body, and the non-living and dead entities which they interact with.
IAO_0000116: Whether this class should be grouped with classes such as "hydrosphere" and "cryosphere" requires some discussion.
in subset: envoAstro
in subset: envoPolar
comment: The gravitational sphere of influence referenced in this class' definition is the Hill sphere: a region in which an object dominates the attraction of satellites despite gravitational perturbations.

Axiom
annotated source: biosphere
annotated property: IAO_0000115
annotated target: A biosphere is a part of an astronomical body which includes, as parts, all the living entities within the gravitational sphere of influence of that body, as well as the non-living and dead entities with which they interact.
has db xref: http://www.biology-online.org/dictionary/Biosphere
has db xref: https://en.wikipedia.org/wiki/Biosphere

Axiom
annotated source: biosphere
annotated property: IAO_0000115
annotated target: A biosphere is an environmental system which includes, as parts, all the living entities within the gravitational sphere of influence of an astronomical body, and the non-living and dead entities which they interact with.
has db xref: http://www.biology-online.org/dictionary/Biosphere
has db xref: https://en.wikipedia.org/wiki/Biosphere

cryosphere
type: Class
subclass of: glacial feature
subclass of: cryoform
subclass of: Restriction
  on property: composed primarily of
  some values from: water ice
IAO_0000115: A cryosphere is that part of a planet which is primarily composed of water is in solid form.
in subset: envoAstro
in subset: envoPolar
comment: This is a very broad and, in practice, poorly defined term. Please consider using or requesting a more specific class.

Axiom
annotated source: cryosphere
annotated property: IAO_0000115
annotated target: A cryosphere is that part of a planet which is primarily composed of water is in solid form.
has db xref: https://en.wikipedia.org/wiki/Cryosphere

hydrosphere
type: Class
subclass of: liquid astronomical body part
subclass of: Restriction
  on property: composed primarily of
  some values from: liquid water
IAO_0000115: An astronomical body part which is composed of the combined mass of water found on, under, and over the surface of a planet.
in subset: envoAstro
in subset: envoPolar
comment: This is a very broad and, in practice, poorly defined term. Please consider using or requesting a more specific class.

Axiom
annotated source: hydrosphere
annotated property: IAO_0000115
annotated target: An astronomical body part which is composed of the combined mass of water found on, under, and over the surface of a planet.
has db xref: https://en.wikipedia.org/wiki/Hydrosphere

precipitation process
type: Class
subclass of: material transport process
IAO_0000115: A precipitation process is a process in which a portion of some substance segregates from a material in which that substance or its precursors were dissolved or suspended in and settles due to a force such as gravity or centrifugal force.

Axiom
annotated source: precipitation process
annotated property: IAO_0000115
annotated target: A precipitation process is a process in which a portion of some substance segregates from a material in which that substance or its precursors were dissolved or suspended in and settles due to a force such as gravity or centrifugal force.
has db xref: https://en.wikipedia.org/wiki/Precipitation_%28chemistry%29
comment: https://en.wikipedia.org/wiki/Precipitation

snowfall
type: Class
subclass of: hydrological precipitation process
subclass of: Restriction
  on property: has participant
  some values from: snow
IAO_0000115: A hydrological process in which irregular aggregates of snow fall to a planetary surface.
has exact synonym: snow fall
in subset: environmental_hazards
in subset: envoPolar

natural environment
type: Class
equivalent class: Class
  intersection of: environmental system
  intersection of: Class
    complement of: Restriction
      on property: contains process
      some values from: anthropisation
  intersection of: Class
    complement of: Restriction
      on property: formed as result of
      some values from: anthropisation
equivalent class: Class
  intersection of: environmental system
  intersection of: Class
    complement of: Restriction
      on property: formed as result of
      some values from: anthropisation
subclass of: environmental system
IAO_0000115: An environmental system in which minimal to no anthropisation has occurred and non-human agents are the primary determinants of the system's dynamics and composition.
IAO_0000118: non-anthropised environment
IAO_0000118: non-anthropized environment
comment: In most contexts, 'natural' is defined by the lack of intervention or influence by humans and their activities. On Earth, most environments fall on a scale between completely natural and anthropised.

Axiom
annotated source: natural environment
annotated property: IAO_0000115
annotated target: An environmental system in which minimal to no anthropisation has occurred and non-human agents are the primary determinants of the system's dynamics and composition.
has db xref: https://en.wikipedia.org/wiki/Anthropization
has db xref: https://en.wikipedia.org/wiki/Natural_environment

anthropisation
type: Class
equivalent class: Class
  intersection of: anthropogenic ecosystem conversion process
  intersection of: Restriction
    on property: has input
    some values from: natural environment
  intersection of: Restriction
    on property: has output
    some values from: anthropogenic environment
equivalent class: Class
  intersection of: anthropogenic environmental process
  intersection of: Restriction
    on property: has input
    some values from: natural environment
  intersection of: Restriction
    on property: has output
    some values from: anthropogenic environment
subclass of: anthropogenic ecosystem conversion process
subclass of: Restriction
  on property: has input
  some values from: natural environment
subclass of: Restriction
  on property: has output
  some values from: anthropogenic environment
IAO_0000115: A process during which a natural environmental system is altered by human action.
has exact synonym: anthropization
comment: An area may be classified as anthropized even though it looks natural, such as grasslands that have been deforested by humans. It can be difficult to determine how much a site has been anthropized in the case of urbanization because one must be able to estimate the state of the landscape before significant human action.

Axiom
annotated source: anthropisation
annotated property: IAO_0000115
annotated target: A process during which a natural environmental system is altered by human action.
has db xref: https://en.wikipedia.org/wiki/Anthropization

Axiom
annotated source: anthropisation
annotated property: comment
annotated target: An area may be classified as anthropized even though it looks natural, such as grasslands that have been deforested by humans. It can be difficult to determine how much a site has been anthropized in the case of urbanization because one must be able to estimate the state of the landscape before significant human action.
has db xref: https://en.wikipedia.org/wiki/Anthropization

terrestrial planet
type: Class
equivalent class: Class
  intersection of: planet
  intersection of: Restriction
    on property: composed primarily of
    some values from: Class
      union of: rock
      union of: metallic material
subclass of: planet
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    union of: rock
    union of: metallic material
IAO_0000115: A planet that is composed primarily of silicate rocks or metals.
has exact synonym: rocky planet
has exact synonym: telluric planet
has related synonym: Earth-like planet
in subset: envoAstro

Axiom
annotated source: terrestrial planet
annotated property: IAO_0000115
annotated target: A planet that is composed primarily of silicate rocks or metals.
has db xref: https://en.wikipedia.org/wiki/Terrestrial_planet

mass liquid flow
type: Class
subclass of: advective transport process
subclass of: Restriction
  on property: has participant
  some values from: gaseous environmental material
IAO_0000115: A process whereby a volume of liquid moves due to a disequilibrium of physical forces.
in subset: envoPolar
comment: This class can refer to the flow of any material in a liquid phase.

Axiom
annotated source: mass liquid flow
annotated property: IAO_0000115
annotated target: A process whereby a volume of liquid moves due to a disequilibrium of physical forces.
has db xref: https://en.wikipedia.org/wiki/Wind

water flow process
type: Class
subclass of: mass liquid flow
subclass of: hydrological process
subclass of: Restriction
  on property: has participant
  some values from: liquid water
IAO_0000115: A process during which a volume of water is transported due to a disequilibria in physical forces.
in subset: environmental_hazards

environmental system determined by a quality
type: Class
equivalent class: Class
  intersection of: environmental system
  intersection of: Restriction
    on property: determined by
    some values from: Class
      intersection of: entity
      intersection of: Restriction
        on property: has quality
        some values from: quality
subclass of: environmental system
subclass of: Restriction
  on property: determined by
  some values from: Class
    intersection of: entity
    intersection of: Restriction
      on property: has quality
      some values from: quality
IAO_0000115: An environmental system which is determined by materials bearing roughly homogeneous qualities.
comment: Organisational class. Not intended for annotation.

environmental system determined by a material
type: Class
equivalent class: Class
  intersection of: environmental system
  intersection of: Restriction
    on property: determined by
    some values from: environmental material
subclass of: environmental system
subclass of: Restriction
  on property: determined by
  some values from: environmental material
IAO_0000115: An environmental system within which an environmental material strongly influences the system's composition and properties.
comment: Organisational class. Not intended for annotation. Subclasses describe environments which are usually permeated by an environmental material. They may also describe environments which are sufficiently close to a material, that their dynamics are strongly influenced by it (e.g. a patch of forest ecosystem neighbouring a uranium dump).

environmental system determined by an organism
type: Class
equivalent class: Class
  intersection of: environmental system
  intersection of: Restriction
    on property: determined by
    some values from: cellular organisms
subclass of: ecosystem
subclass of: Restriction
  on property: determined by
  some values from: cellular organisms
IAO_0000115: An environmental system which is determined by a living organism.
has related synonym: host-associated environment
in subset: envoEmpo
in subset: envoOmics

plant-associated environment
type: Class
equivalent class: Class
  intersection of: environmental system
  intersection of: Restriction
    on property: determined by
    some values from: Viridiplantae
subclass of: environmental system determined by an organism
subclass of: Restriction
  on property: determined by
  some values from: Viridiplantae
IAO_0000115: An environmental system determined by a green plant.
IAO_0000118: Plant
has broad synonym: plant environment
has exact synonym: Viridiplantae-associated environment
in subset: envoEmpo
in subset: envoOmics

Axiom
annotated source: plant-associated environment
annotated property: IAO_0000118
annotated target: Plant
has db xref: http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/

animal-associated environment
type: Class
equivalent class: Class
  intersection of: environmental system
  intersection of: Restriction
    on property: determined by
    some values from: Metazoa
subclass of: environmental system determined by an organism
subclass of: Restriction
  on property: determined by
  some values from: Metazoa
IAO_0000115: An environmental system determined by an animal.
IAO_0000118: Animal
has broad synonym: animal environment
has exact synonym: Metazoan-associated environment
in subset: envoEmpo
in subset: envoMeo
in subset: envoOmics

Axiom
annotated source: animal-associated environment
annotated property: IAO_0000118
annotated target: Animal
has db xref: http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/

meteor
type: Class
equivalent class: Class
  intersection of: object
  intersection of: Restriction
    on property: located in
    some values from: atmosphere
subclass of: object
subclass of: Restriction
  on property: located in
  some values from: atmosphere
IAO_0000115: A meteor is any matter- or energy-based entity which is located in the atmosphere of an astronomical body.
in subset: envoAtmo

Axiom
annotated source: meteor
annotated property: IAO_0000115
annotated target: A meteor is any matter- or energy-based entity which is located in the atmosphere of an astronomical body.
has db xref: https://cloudatlas.wmo.int/other-meteors.html

hydrometeor
type: Class
equivalent class: Class
  intersection of: meteor
  intersection of: Restriction
    on property: composed primarily of
    some values from: Class
      union of: liquid water
      union of: water ice
subclass of: meteor
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    union of: liquid water
    union of: water ice
IAO_0000115: A meteor which is primarily composed of water.
in subset: envoAtmo

Axiom
annotated source: hydrometeor
annotated property: IAO_0000115
annotated target: A meteor which is primarily composed of water.
has db xref: https://cloudatlas.wmo.int/other-meteors.html

lithometeor
type: Class
equivalent class: Class
  intersection of: meteor
  intersection of: Restriction
    on property: composed primarily of
    some values from: rock
subclass of: meteor
subclass of: Restriction
  on property: derives from
  some values from: meteoroid
subclass of: Restriction
  on property: composed primarily of
  some values from: rock
IAO_0000115: A meteor which is primarily composed of rock.
in subset: envoAtmo

natural lake
type: Class
equivalent class: Class
  intersection of: lake
  intersection of: Class
    complement of: Restriction
      on property: formed as result of
      some values from: anthropisation
subclass of: lake
IAO_0000115: A lake which has formed as the result of processes that are not or are only minimally driven by human activity.
IAO_0000116: This class is to be filled by inference.

radiation
type: Class
subclass of: environmental system process
subclass of: Restriction
  on property: has participant
  some values from: subatomic particle
subclass of: Restriction
  on property: has participant
  some values from: environmental material
IAO_0000115: A process during which energy is emitted or transmitted in the form of waves or particles through space or a material medium.
IAO_0000116: Requires addition of waves for full axiomatisation. This should be linked to "subatomic particle" with an "or". Note that ENVO represents space as an environmental material (a hard vacuum with sparse material inclusions).
in subset: environmental_hazards
in subset: envoAstro

Axiom
annotated source: radiation
annotated property: IAO_0000115
annotated target: A process during which energy is emitted or transmitted in the form of waves or particles through space or a material medium.
has db xref: https://en.wikipedia.org/wiki/Radiation

saline environment
type: Class
equivalent class: Class
  intersection of: environmental system determined by a quality
  intersection of: Restriction
    on property: determined by
    some values from: Class
      intersection of: environmental material
      intersection of: Class
        union of: Restriction
subclass of: high osmolarity environment
subclass of: environmental system determined by a material
subclass of: Restriction
  on property: determined by
  some values from: Class
    intersection of: environmental material
    intersection of: Class
      union of: Restriction
        on property: has quality
        some values from: increased osmolarity
      union of: Restriction
        on property: has increased levels of
        some values from: sodium chloride
IAO_0000115: An environment which is determined by materials which bear significant concentrations of salts.
IAO_0000118: Saline
in subset: envoEmpo
comment: The thresholds for "significant" concentrations of salts vary widely and thus no committment is made in this class. Subclasses with more explicit thresholds can be made upon request.

Axiom
annotated source: saline environment
annotated property: IAO_0000118
annotated target: Saline
has db xref: http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/

soil environment
type: Class
equivalent class: Class
  intersection of: environmental system
  intersection of: Restriction
    on property: determined by
    some values from: soil
subclass of: environmental system determined by a quality
subclass of: environmental system determined by a material
subclass of: Restriction
  on property: determined by
  some values from: soil
IAO_0000115: An environmental system which has its properties and dynamics determined by soil.
IAO_0000118: Soil (non-saline)
in subset: envoEmpo
in subset: envoOmics

Axiom
annotated source: soil environment
annotated property: IAO_0000118
annotated target: Soil (non-saline)
has db xref: http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/

sediment environment
type: Class
equivalent class: Class
  intersection of: environmental system
  intersection of: Restriction
    on property: determined by
    some values from: sediment
subclass of: environmental system determined by a quality
subclass of: environmental system determined by a material
subclass of: Restriction
  on property: determined by
  some values from: sediment
IAO_0000115: An environmental system which has its properties and dynamics determined by sediment.
in subset: envoEmpo
in subset: envoOmics

aerosol environment
type: Class
equivalent class: Class
  intersection of: environmental system
  intersection of: Restriction
    on property: determined by
    some values from: aerosol
subclass of: environmental system determined by a quality
subclass of: environmental system determined by a material
subclass of: Restriction
  on property: determined by
  some values from: aerosol
IAO_0000115: An environmental system which has its properties and dynamics determined by an aerosol.
IAO_0000118: Aerosol (saline)
in subset: envoEmpo
in subset: envoOmics

Axiom
annotated source: aerosol environment
annotated property: IAO_0000118
annotated target: Aerosol (saline)
has db xref: http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/

saline aerosol environment
type: Class
equivalent class: Class
  intersection of: aerosol environment
  intersection of: Restriction
    on property: determined by
    some values from: Class
      intersection of: aerosol
      intersection of: Restriction
        on property: has quality
        some values from: increased osmolarity
subclass of: saline environment
subclass of: aerosol environment
subclass of: Restriction
  on property: determined by
  some values from: Class
    intersection of: aerosol
    intersection of: Restriction
      on property: has quality
      some values from: increased osmolarity
IAO_0000115: An environmental system which has its properties and dynamics determined by a saline aerosol.
IAO_0000118: Aerosol (saline)
in subset: envoEmpo
in subset: envoOmics

Axiom
annotated source: saline aerosol environment
annotated property: IAO_0000118
annotated target: Aerosol (saline)
has db xref: http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/
comment: seaspray or other aerosolized saline material (>5 psu)

non-saline aerosol environment
type: Class
equivalent class: Class
  intersection of: aerosol environment
  intersection of: Restriction
    on property: determined by
    some values from: Class
      intersection of: aerosol
      intersection of: Class
        complement of: Class
subclass of: aerosol environment
subclass of: Restriction
  on property: determined by
  some values from: Class
    intersection of: aerosol
    intersection of: Class
      complement of: Class
        union of: Restriction
IAO_0000115: An environmental system which has its properties and dynamics determined by an aerosol with a low concentration of dissolved solutes.
IAO_0000118: Aerosol (non-saline)
in subset: envoEmpo
in subset: envoOmics

Axiom
annotated source: non-saline aerosol environment
annotated property: IAO_0000118
annotated target: Aerosol (non-saline)
has db xref: http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/
comment: aerosolized dust or liquid

environment associated with an animal part or small animal
type: Class
equivalent class: Class
  intersection of: environmental system
  intersection of: Restriction
    on property: determined by
    some values from: material anatomical entity
equivalent class: Class
  intersection of: ecosystem
  intersection of: Restriction
    on property: determined by
    some values from: material anatomical entity
subclass of: ecosystem
subclass of: Restriction
  on property: determined by
  some values from: material anatomical entity
IAO_0000115: An environmental system determined by part of a living or dead animal, or a whole small animal.

environment associated with a plant part or small plant
type: Class
equivalent class: Class
  intersection of: environmental system
  intersection of: Restriction
    on property: determined by
    some values from: Class
      union of: plant anatomical entity
      union of: Class
        intersection of: whole plant
        intersection of: Restriction
equivalent class: Class
  intersection of: ecosystem
  intersection of: Restriction
    on property: determined by
    some values from: Class
      union of: plant anatomical entity
      union of: Class
        intersection of: whole plant
        intersection of: Restriction
subclass of: ecosystem
subclass of: Restriction
  on property: determined by
  some values from: Class
    union of: plant anatomical entity
    union of: Class
      intersection of: whole plant
      intersection of: Restriction
        on property: has quality
        some values from: decreased size
IAO_0000115: An environmental system determined by part of a living or dead plant, or a whole small plant.
IAO_0000118: Plant corpus
in subset: envoEmpo
in subset: envoMeo
in subset: envoOmics

Axiom
annotated source: environment associated with a plant part or small plant
annotated property: IAO_0000118
annotated target: Plant corpus
has db xref: http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/

meteoroid
type: Class
subclass of: astronomical body
subclass of: Restriction
  on property: has quality
  some values from: decreased size
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    union of: rock
    union of: metallic material
IAO_0000115: An astronomical body which is composed of rocky or metallic materials and is considerably smaller than asteroids.
in subset: envoAstro

Axiom
annotated source: meteoroid
annotated property: IAO_0000115
annotated target: An astronomical body which is composed of rocky or metallic materials and is considerably smaller than asteroids.
has db xref: https://en.wikipedia.org/wiki/Meteoroid

metallic material
type: Class
subclass of: environmental material
subclass of: Restriction
  on property: has quality
  some values from: opaque
subclass of: Restriction
  on property: has quality
  some values from: Class
    union of: quality of a solid
    union of: quality of a liquid
subclass of: Restriction
  on property: has role
  some values from: electron donor
subclass of: Restriction
  on property: composed primarily of
  some values from: metal atom
IAO_0000115: A material which is composed primarily of one or more pure metals and which shows their properties.
IAO_0000116: Far more axiomatisation can be done should the qualities of metals be added to PATO or a similar quality ontology. However, note that there are many exceptions to the typical qualities of the majority of metals.
has related synonym: metal
comment: While this class allows for some degree of contamination by non-metal substances, the material represented should show at least some of the typical features of a pure metal: hardness (except for liquid metals), opacity, lustre, malleability, fusibility, ductile and good electrical and thermal conductivity.

Axiom
annotated source: metallic material
annotated property: IAO_0000115
annotated target: A material which is composed primarily of one or more pure metals and which shows their properties.
comment: https://en.wikipedia.org/wiki/Metal

aerosolised liquids
type: Class
equivalent class: Class
  intersection of: aerosol
  intersection of: Restriction
    on property: composed primarily of
    some values from: Class
      intersection of: environmental material
      intersection of: Restriction
        on property: has quality
        some values from: quality of a liquid
subclass of: aerosol
subclass of: Restriction
  on property: has quality
  some values from: Class
    union of: quality of a solid
    union of: quality of a liquid
subclass of: Restriction
  on property: surrounded by
  some values from: air
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    intersection of: environmental material
    intersection of: Restriction
      on property: has quality
      some values from: quality of a liquid
IAO_0000115: An aerosol which has non-gaseous parts that are primarily composed of liquid droplets.
has db xref: SWEETRealm:Aerosol
has exact synonym: liquid aerosol
in subset: envoAtmo

Axiom
annotated source: aerosolised liquids
annotated property: IAO_0000115
annotated target: An aerosol which has non-gaseous parts that are primarily composed of liquid droplets.
has db xref: https://en.wikipedia.org/wiki/Aerosol

aerosolised solids
type: Class
equivalent class: Class
  intersection of: aerosol
  intersection of: Restriction
    on property: composed primarily of
    some values from: Class
      intersection of: environmental material
      intersection of: Restriction
        on property: has quality
        some values from: quality of a solid
subclass of: aerosol
subclass of: Restriction
  on property: has quality
  some values from: Class
    union of: quality of a solid
    union of: quality of a liquid
subclass of: Restriction
  on property: surrounded by
  some values from: air
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    intersection of: environmental material
    intersection of: Restriction
      on property: has quality
      some values from: quality of a solid
IAO_0000115: An aerosol which has non-gaseous parts that are primarily composed of solid particles.
has db xref: SWEETRealm:Aerosol
has exact synonym: solid aerosol
in subset: envoAtmo

Axiom
annotated source: aerosolised solids
annotated property: IAO_0000115
annotated target: An aerosol which has non-gaseous parts that are primarily composed of solid particles.
has db xref: https://en.wikipedia.org/wiki/Aerosol

ecosystem
type: Class
equivalent class: Class
  union of: Class
    intersection of: environmental system
    intersection of: Restriction
      on property: has part
      some values from: cellular organisms
  union of: Restriction
    on property: has part
    some values from: collection of organisms
  union of: Restriction
    on property: determined by
    some values from: cellular organisms
  union of: Restriction
    on property: determined by
    some values from: collection of organisms
  union of: Restriction
    on property: determined by
    some values from: plant anatomical entity
  union of: Restriction
    on property: determined by
    some values from: anatomical entity
subclass of: environmental system
IAO_0000115: An environmental system which includes both living and non-living components.
has alternative id: LTER:173
comment: This class will be primarily filled by inference, any environmental system which necessarily includes living parts should be autoclassified here.

Axiom
annotated source: ecosystem
annotated property: IAO_0000115
annotated target: An environmental system which includes both living and non-living components.
has db xref: https://en.wikipedia.org/wiki/Ecosystem

Axiom
annotated source: ecosystem
annotated property: hasAlternativeId
annotated target: LTER:173
has db xref: http://129.24.124.196/vocab/vocab/index.php

gas planet
type: Class
equivalent class: Class
  intersection of: planet
  intersection of: Restriction
    on property: composed primarily of
    some values from: Class
      intersection of: Class
        union of: hydrogen molecular entity
        union of: helium molecular entity
      intersection of: Restriction
        on property: has quality
        some values from: quality of a gas
subclass of: planet
subclass of: Restriction
  on property: composed primarily of
  some values from: astrogeological gas
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    intersection of: Class
      union of: hydrogen molecular entity
      union of: helium molecular entity
    intersection of: Restriction
      on property: has quality
      some values from: quality of a gas
IAO_0000115: A planet which is primarily composed of hydrogen and helium.
in subset: envoAstro
comment: Gas giants are composed of about 90% hydrogen and helium. Jupiter and Saturn are examples of gas giants.

Axiom
annotated source: gas planet
annotated property: IAO_0000115
annotated target: A planet which is primarily composed of hydrogen and helium.
has db xref: http://solarsystem.nasa.gov/planets/whatisaplanet
has db xref: https://en.wikipedia.org/wiki/List_of_planet_types
has db xref: https://en.wikipedia.org/wiki/Planet

ice
type: Class
equivalent class: Class
  intersection of: environmental material
  intersection of: Restriction
    on property: has quality
    some values from: Class
      union of: quality of a solid
      union of: frozen
subclass of: environmental material
subclass of: Restriction
  on property: has quality
  some values from: Class
    union of: quality of a solid
    union of: frozen
IAO_0000115: An ice is an environmental material which is either frozen or which is maintained in a solid state by gravitational forces or pressure.
comment: This class is defined logically - any material that is frozen is considered a subclass. Note that ice may be formed at very high temperatures, due to gravitational effects and/or pressure.

ocean planet
type: Class
equivalent class: Class
  intersection of: planet
  intersection of: Restriction
    on property: has part
    some values from: Class
      intersection of: planetary surface
      intersection of: Restriction
        on property: composed primarily of
        some values from: liquid water
subclass of: planet
subclass of: Restriction
  on property: has part
  some values from: Class
    intersection of: planetary surface
    intersection of: Restriction
      on property: composed primarily of
      some values from: liquid water
IAO_0000115: A planet which has a surface layer that nearly completely or completely covered by water, and which has a substantial portion of its mass composed of water.
IAO_0000116: An axiom to express that the planet has a 'substantial' proportion of its mass in the form of water wound enhance this class.
has exact synonym: aquaplanet
has exact synonym: panthalassic planet
has exact synonym: water world
in subset: envoAstro
comment: While this planetary form is still mostly theoretical, strong candidates exist such as the extrasolar planet GJ 1214 b and ocean planet candidate Kepler-22b.

Axiom
annotated source: ocean planet
annotated property: IAO_0000115
annotated target: A planet which has a surface layer that nearly completely or completely covered by water, and which has a substantial portion of its mass composed of water.
has db xref: https://en.wikipedia.org/wiki/Ocean_planet

ice planet
type: Class
equivalent class: Class
  intersection of: planet
  intersection of: Restriction
    on property: has part
    some values from: Class
      intersection of: planetary surface
      intersection of: Restriction
        on property: composed primarily of
        some values from: ice
subclass of: planet
subclass of: Restriction
  on property: has part
  some values from: Class
    intersection of: planetary surface
    intersection of: Restriction
      on property: composed primarily of
      some values from: ice
IAO_0000115: A planet which has a surface layer that nearly completely or completely covered by ice, and which has a substantial portion of its mass composed of ice.
has exact synonym: cryoplanet
in subset: envoAstro
comment: While this planetary form is still mostly theoretical, strong candidates exist such as OGLE-2005-BLG-390Lb, OGLE-2013-BLG-0341L b and MOA-2007-BLG-192Lb. Pluto was considered an ice planet until its reclassification in 2006 CE. Surface temperatures of ice planets would have to be below 260 K (−13°C) if composed primarily of water, below 180 K (−93°C) if primarily composed of CO2 and ammonia, and below 80 K (−193°C) if composed primarily of methane.

Axiom
annotated source: ice planet
annotated property: IAO_0000115
annotated target: A planet which has a surface layer that nearly completely or completely covered by ice, and which has a substantial portion of its mass composed of ice.
has db xref: https://en.wikipedia.org/wiki/Ice_planet

Axiom
annotated source: ice planet
annotated property: comment
annotated target: While this planetary form is still mostly theoretical, strong candidates exist such as OGLE-2005-BLG-390Lb, OGLE-2013-BLG-0341L b and MOA-2007-BLG-192Lb. Pluto was considered an ice planet until its reclassification in 2006 CE. Surface temperatures of ice planets would have to be below 260 K (−13°C) if composed primarily of water, below 180 K (−93°C) if primarily composed of CO2 and ammonia, and below 80 K (−193°C) if composed primarily of methane.
has db xref: https://en.wikipedia.org/wiki/Ice_planet

helium planet
type: Class
equivalent class: Class
  intersection of: gas planet
  intersection of: Restriction
    on property: has part
    some values from: Class
      intersection of: atmosphere
      intersection of: Restriction
        on property: composed primarily of
        some values from: helium molecular entity
subclass of: gas planet
subclass of: Restriction
  on property: has part
  some values from: Class
    intersection of: atmosphere
    intersection of: Restriction
      on property: composed primarily of
      some values from: helium molecular entity
IAO_0000115: A gas planet which has an atmosphere composed primarily of helium.
IAO_0000116: The placement of this class assumes that some traces of hydrogen are left in the atmosphere. If this is not the case, the axiom on gas planet must be updated.
in subset: envoAstro
comment: A helium planet might form via hydrogen evaporation from a gaseous planet orbiting close to a star. Low-mass white dwarfs may transition into objects which are essentially helium planets by hydrogen depletion through mass transfer to a massive object such as a neutron star. Gliese 436 b is a candidate helium planet.

Axiom
annotated source: helium planet
annotated property: IAO_0000115
annotated target: A gas planet which has an atmosphere composed primarily of helium.
has db xref: https://en.wikipedia.org/wiki/Helium_planet

Axiom
annotated source: helium planet
annotated property: comment
annotated target: A helium planet might form via hydrogen evaporation from a gaseous planet orbiting close to a star. Low-mass white dwarfs may transition into objects which are essentially helium planets by hydrogen depletion through mass transfer to a massive object such as a neutron star. Gliese 436 b is a candidate helium planet.
has db xref: https://en.wikipedia.org/wiki/Helium_planet

volatile astrogeological material
type: Class
subclass of: environmental material
subclass of: Restriction
  on property: part of
  some values from: Class
    union of: atmosphere
    union of: planetary crust
IAO_0000115: A material which is composed primarily of chemical elements and compounds with relatively low boiling points, equilibrium condensation temperatures below 1300 Kelvin, and which are part of the crust or atmosphere of a moon or planet.
IAO_0000116: Add and axiomatise with moon and lunar crust
has related synonym: volatile
in subset: envoAstro
comment: Examples include nitrogen, water, carbon dioxide, ammonia, hydrogen, methane and sulfur dioxide. In astrogeology, these compounds, in their solid state, often comprise large proportions of the crusts of moons and dwarf planets.

Axiom
annotated source: volatile astrogeological material
annotated property: IAO_0000115
annotated target: A material which is composed primarily of chemical elements and compounds with relatively low boiling points, equilibrium condensation temperatures below 1300 Kelvin, and which are part of the crust or atmosphere of a moon or planet.
has db xref: https://en.wikipedia.org/wiki/Volatiles

Axiom
annotated source: volatile astrogeological material
annotated property: comment
annotated target: Examples include nitrogen, water, carbon dioxide, ammonia, hydrogen, methane and sulfur dioxide. In astrogeology, these compounds, in their solid state, often comprise large proportions of the crusts of moons and dwarf planets.
has db xref: https://en.wikipedia.org/wiki/Volatiles

astrogeological gas
type: Class
subclass of: volatile astrogeological material
IAO_0000115: An astrogeological volatile which is composed primarily of chemical compounds with boiling points around those of hydrogen and helium.
has related synonym: gas
in subset: envoAstro
comment: This is a term native to the fields of planetary science and astrophysics. Hydrogen has a boiling point of 20.271 Kelvin and a melting point of 13.99 Kelvin. Helium has a boiling point of 4.222 Kelvin and a melting point of 0.95 Kelvin.

Axiom
annotated source: astrogeological gas
annotated property: IAO_0000115
annotated target: An astrogeological volatile which is composed primarily of chemical compounds with boiling points around those of hydrogen and helium.
has db xref: https://en.wikipedia.org/wiki/Volatiles

geodiversity
type: Class
subclass of: physical object quality
IAO_0000115: A quality which inheres in a astronomical body or astronomical body part by virtue of the variation in its material composition, participation in geological processes, and the variation in is land- and hydroforms.
comment: Materials which are usually assessed when appraising geodiversity include minerals, rocks, sediments, fossils, soils and water. Landforms factored into geodiversity metrics typically include folds, faults, and other expressions of morphology or relations between units of earth material. Natural processes that are included in measures of geodiversity are those which either maintain or change materials or geoforms, including tectonics, sediment transport, and pedogenesis. Geodiversity does not usually factor in anthropogenic entities.

Axiom
annotated source: geodiversity
annotated property: IAO_0000115
annotated target: A quality which inheres in a astronomical body or astronomical body part by virtue of the variation in its material composition, participation in geological processes, and the variation in is land- and hydroforms.
has db xref: https://en.wikipedia.org/wiki/Geodiversity

Axiom
annotated source: geodiversity
annotated property: comment
annotated target: Materials which are usually assessed when appraising geodiversity include minerals, rocks, sediments, fossils, soils and water. Landforms factored into geodiversity metrics typically include folds, faults, and other expressions of morphology or relations between units of earth material. Natural processes that are included in measures of geodiversity are those which either maintain or change materials or geoforms, including tectonics, sediment transport, and pedogenesis. Geodiversity does not usually factor in anthropogenic entities.

environment associated with an aquatic invertebrate
type: Class
equivalent class: Class
  intersection of: ecosystem
  intersection of: Restriction
    on property: determined by
    some values from: Class
      intersection of: Class
        intersection of: Metazoa
        intersection of: Class
      intersection of: Restriction
        on property: has habitat
        some values from: Restriction
subclass of: animal-associated environment
subclass of: Restriction
  on property: determined by
  some values from: Class
    intersection of: Class
      intersection of: Metazoa
      intersection of: Class
        complement of: Vertebrata <Metazoa>
    intersection of: Restriction
      on property: has habitat
      some values from: Restriction
        on property: overlaps
        some values from: aquatic environment
IAO_0000115: An environment which has its properties and composition largely determined by the presence of a metazoan which lacks a vetebral column and which has a habitat that is found in an aquatic environmental system.
has db xref: http://purl.jp/bio/11/meo/MEO_0000871
in subset: envoMeo
in subset: envoOmics

Axiom
annotated source: environment associated with an aquatic invertebrate
annotated property: hasDbXref
annotated target: http://purl.jp/bio/11/meo/MEO_0000871
comment: Not currently live, may need to be switched to alternative PURLs.

water surface
type: Class
equivalent class: Class
  intersection of: liquid surface layer
  intersection of: Restriction
    on property: part of
    some values from: liquid water
subclass of: aquatic layer
subclass of: liquid surface layer
subclass of: Restriction
  on property: part of
  some values from: liquid water
IAO_0000115: The surface layer of a volume of water.
has db xref: EcoLexicon:surface_water
has db xref: SWEETRealm:SurfaceWater
has db xref: https://en.wikipedia.org/wiki/Surface_water
has exact synonym: surface of a body of water
has exact synonym: water body surface

sediment surface
type: Class
equivalent class: Class
  intersection of: surface layer
  intersection of: Restriction
    on property: part of
    some values from: sediment
subclass of: surface of an astronomical body
subclass of: Restriction
  on property: part of
  some values from: sediment
IAO_0000115: The surface layer of a mass of sediment.
has exact synonym: surface of a sedimentary mass
has exact synonym: surface sediment

terrestrial environmental zone
type: Class
equivalent class: Class
  intersection of: environmental zone
  intersection of: Restriction
    on property: part of
    some values from: land
subclass of: environmental zone
subclass of: Restriction
  on property: part of
  some values from: terrestrial biome
subclass of: Restriction
  on property: part of
  some values from: land
IAO_0000115: An environmental zone which is bounded by material parts of a land mass or the atmosphere or space adjacent to it.

marine environmental zone
type: Class
equivalent class: Class
  intersection of: environmental zone
  intersection of: Restriction
    on property: part of
    some values from: marine environment
subclass of: environmental zone
subclass of: Restriction
  on property: part of
  some values from: marine environment
IAO_0000115: An environmental zone which is bounded by material parts of a marine environment.
comment: This class will eventually be populated by inference alone, with its subclasses distributed in more process-linked hierarchies to improve semantic density.

wetland ecosystem
type: Class
subclass of: ecosystem
subclass of: Restriction
  on property: has part
  some values from: Class
    intersection of: land
    intersection of: Restriction
      on property: composed primarily of
      some values from: Class
        intersection of: soil
        intersection of: Restriction
IAO_0000115: A terrestrial ecosystem which is inundated or saturated by surface or ground water at a frequency and duration sufficient to support, and that under normal circumstances does support, a prevalence of vegetation typically adapted for life in saturated soil conditions.
has db xref: EcoLexicon:wetland
has db xref: FTT:1001
has db xref: FTT:1060
has db xref: FTT:1061
has db xref: FTT:1118
has db xref: FTT:1180
has db xref: FTT:1190
has db xref: FTT:1206
has db xref: FTT:1207
has db xref: FTT:1226
has db xref: FTT:184
has db xref: FTT:185
has db xref: FTT:228
has db xref: FTT:281
has db xref: FTT:480
has db xref: FTT:716
has db xref: FTT:883
has db xref: FTT:934
has db xref: FTT:945
has db xref: FTT:983
has db xref: Geonames:H.WTLD
has db xref: LTER:630
has db xref: SPIRE:Bog
has db xref: SWEETRealm:Wetland
has db xref: TGN:21301
has db xref: TGN:21304
has db xref: TGN:21305
has db xref: https://en.wikipedia.org/wiki/Wetland
has exact synonym: WETLAND
has exact synonym: Wetland
has narrow synonym: EstuarineWetland
has narrow synonym: LacustrineWetland
has narrow synonym: MarineWetland
has narrow synonym: PalustrineWetland
has narrow synonym: RiparianWetland
has narrow synonym: TerrestialWetland
has narrow synonym: back marsh
has narrow synonym: backswamp
has narrow synonym: backwater
has narrow synonym: barrier flat
has narrow synonym: blanket bog
has narrow synonym: bog
has narrow synonym: cienaga
has narrow synonym: dismal
has narrow synonym: everglade
has narrow synonym: floating marsh
has narrow synonym: forested wetland
has narrow synonym: marsh
has narrow synonym: mire
has narrow synonym: mud flat
has narrow synonym: peat cutting area
has narrow synonym: peatland
has narrow synonym: quagmire
has narrow synonym: quaking bog
has narrow synonym: riparian area
has narrow synonym: slash
has narrow synonym: slough
has narrow synonym: slue
has narrow synonym: swamp forest
has narrow synonym: tulelands
has related synonym: moor
has related synonym: morass
has related synonym: muskeg

Axiom
annotated source: wetland ecosystem
annotated property: IAO_0000115
annotated target: A terrestrial ecosystem which is inundated or saturated by surface or ground water at a frequency and duration sufficient to support, and that under normal circumstances does support, a prevalence of vegetation typically adapted for life in saturated soil conditions.
has db xref: https://en.wikipedia.org/wiki/Wetland

Axiom
annotated source: wetland ecosystem
annotated property: hasExactSynonym
annotated target: WETLAND
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasExactSynonym
annotated target: Wetland
has db xref: NASA:earthrealm

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: EstuarineWetland
has db xref: NASA:earthrealm

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: LacustrineWetland
has db xref: NASA:earthrealm

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: MarineWetland
has db xref: NASA:earthrealm

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: PalustrineWetland
has db xref: NASA:earthrealm

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: RiparianWetland
has db xref: NASA:earthrealm

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: TerrestialWetland
has db xref: NASA:earthrealm

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: back marsh
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: backswamp
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: backwater
has db xref: ADL:FTT

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: barrier flat
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: blanket bog
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: bog
has db xref: ADL:FTT

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: bog
has db xref: Getty:TGN

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: cienaga
has db xref: ADL:FTT

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: dismal
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: everglade
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: floating marsh
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: forested wetland
has db xref: ADL:FTT

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: marsh
has db xref: ADL:FTT

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: mire
has db xref: ADL:FTT

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: mire
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: mud flat
has db xref: ADL:FTT

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: peat cutting area
has db xref: ADL:FTT

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: peatland
has db xref: ADL:FTT

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: quagmire
has db xref: ADL:FTT

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: quagmire
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: quaking bog
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: riparian area
has db xref: ADL:FTT

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: slash
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: slough
has db xref: ADL:FTT

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: slough
has db xref: Getty:TGN

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: slough
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: slue
has db xref: ADL:FTT

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: swamp forest
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: tulelands
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasRelatedSynonym
annotated target: moor
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasRelatedSynonym
annotated target: morass
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasRelatedSynonym
annotated target: muskeg
has db xref: USGS:SDTS

terrestrial natural environment
type: Class
equivalent class: Class
  intersection of: natural environment
  intersection of: Restriction
    on property: part of
    some values from: land
subclass of: natural environment
subclass of: Restriction
  on property: part of
  some values from: land
IAO_0000115: A natural environment which is located on a land mass.

aquatic natural environment
type: Class
equivalent class: Class
  intersection of: natural environment
  intersection of: Restriction
    on property: part of
    some values from: water body
subclass of: natural environment
subclass of: Restriction
  on property: part of
  some values from: water body
IAO_0000115: A natural environment which is within a water body.

liquid layer
type: Class
equivalent class: Class
  intersection of: layer
  intersection of: Restriction
    on property: composed primarily of
    some values from: liquid environmental material
subclass of: layer
subclass of: liquid astronomical body part
IAO_0000115: A layer which is primarily composed of some liquid material.

solid layer
type: Class
equivalent class: Class
  intersection of: layer
  intersection of: Restriction
    on property: composed primarily of
    some values from: solid environmental material
subclass of: solid astronomical body part
subclass of: layer
IAO_0000115: A layer which is primarily composed of some solid material, allowing for non-solid parts such as interstitial pockets of gas or liquid.

water ice layer
type: Class
equivalent class: Class
  intersection of: solid layer
  intersection of: Restriction
    on property: composed primarily of
    some values from: water ice
subclass of: glacial feature
subclass of: solid layer
subclass of: cryoform
subclass of: Restriction
  on property: composed primarily of
  some values from: water ice
IAO_0000115: A layer which is primarily composed of some solid material, allowing for non-solid parts such as interstitial pockets of gas or liquid.

atmospheric zone
type: Class
equivalent class: Class
  intersection of: environmental zone
  intersection of: Restriction
    on property: part of
    some values from: atmosphere
subclass of: environmental zone
subclass of: Restriction
  on property: part of
  some values from: atmosphere
IAO_0000115: An environmental zone which is part of an atmosphere.
has exact synonym: atmospheric area

vegetated area
type: Class
subclass of: terrestrial environmental zone
IAO_0000115: A vegetated area is a geographic feature which has ground cover dominated by plant communities.
created by: ORCID:0000-0002-4366-3088
in subset: envoPolar

hydroform
type: Class
equivalent class: Class
  intersection of: liquid astronomical body part
  intersection of: Restriction
    on property: part of
    some values from: water body
  intersection of: Restriction
    on property: composed primarily of
    some values from: liquid water
subclass of: liquid astronomical body part
subclass of: Restriction
  on property: part of
  some values from: water body
subclass of: Restriction
  on property: contains process
  some values from: water flow process
subclass of: Restriction
  on property: composed primarily of
  some values from: liquid water
IAO_0000115: A geographic feature which is primarily composed of a continuous volume of liquid water held in shape or sustained by an environmental process.
IAO_0000116: Should create links to envrionmental process with new relation like "sustained_by"
comment: Similar, in spirit, to landform.

Axiom
annotated source: hydroform
annotated property: IAO_0000116
annotated target: Should create links to envrionmental process with new relation like "sustained_by"
created by: ORCID:0000-0002-4366-3088

liquid air-water interface layer
type: Class
equivalent class: Class
  intersection of: liquid surface layer
  intersection of: Restriction
    on property: adjacent to
    some values from: air
subclass of: liquid surface layer
subclass of: Restriction
  on property: adjacent to
  some values from: air
IAO_0000115: A liquid surface layer which is in contact with air.

liquid surface layer
type: Class
equivalent class: Class
  intersection of: surface layer
  intersection of: Restriction
    on property: composed primarily of
    some values from: liquid environmental material
subclass of: liquid layer
subclass of: surface of an astronomical body
IAO_0000115: A liquid surface layer which is in contact with air.

solid surface layer
type: Class
equivalent class: Class
  intersection of: surface layer
  intersection of: Restriction
    on property: composed primarily of
    some values from: solid environmental material
subclass of: solid layer
subclass of: surface of an astronomical body
IAO_0000115: A surface layer which is composed primarily of solid environmental material.

saline water body
type: Class
equivalent class: Class
  intersection of: water body
  intersection of: Restriction
    on property: composed primarily of
    some values from: saline water
subclass of: water body
subclass of: Restriction
  on property: composed primarily of
  some values from: saline water
IAO_0000115: A body of water which is primarily composed of saline water.
has exact synonym: saline body of water
comment: This class has its subclasses populated by inference.

advective transport process
type: Class
subclass of: material transport process
IAO_0000115: A material transport process during which a volume of material is displaced due to a disequilibrium in physical forces and during which 1) the qualities that inhere in that volume and 2) the processes that are unfolding within it are largely unchanged.
has exact synonym: advective transport
comment: Advective processes are disjoint from diffusive processes. Typically, fluids are advected.

Axiom
annotated source: advective transport process
annotated property: IAO_0000115
annotated target: A material transport process during which a volume of material is displaced due to a disequilibrium in physical forces and during which 1) the qualities that inhere in that volume and 2) the processes that are unfolding within it are largely unchanged.
has db xref: https://en.wikipedia.org/wiki/Advection
has db xref: https://en.wikipedia.org/wiki/Intensive_and_extensive_properties

erosion
type: Class
subclass of: material transport process
subclass of: Restriction
  on property: has participant
  some values from: environmental material
subclass of: Restriction
  on property: has participant
  some values from: planetary crust
IAO_0000115: An action of exogenic processes (such as water flow or wind) which remove environmental material from one location on the surface of an astronomical body, transporting it to another location where it is deposited.

Axiom
annotated source: erosion
annotated property: IAO_0000115
annotated target: An action of exogenic processes (such as water flow or wind) which remove environmental material from one location on the surface of an astronomical body, transporting it to another location where it is deposited.
has db xref: https://en.wikipedia.org/wiki/Erosion

primary aerosol formation process
type: Class
equivalent class: Class
  intersection of: material transport process
  intersection of: Restriction
    on property: has input
    some values from: Class
      intersection of: gaseous environmental material
      intersection of: Class
        union of: particulate matter
        union of: solid environmental material
        union of: liquid environmental material
  intersection of: Restriction
    on property: has output
    some values from: aerosol
subclass of: material transport process
subclass of: Restriction
  on property: has input
  some values from: Class
    intersection of: gaseous environmental material
    intersection of: Class
      union of: particulate matter
      union of: solid environmental material
      union of: liquid environmental material
subclass of: Restriction
  on property: has output
  some values from: aerosol
IAO_0000115: A material transport process during which solid or liquid particles are directly introduced into a volume of gas.
has related synonym: primary aerosol formation

Axiom
annotated source: primary aerosol formation process
annotated property: IAO_0000115
annotated target: A material transport process during which solid or liquid particles are directly introduced into a volume of gas.
has db xref: https://en.wikipedia.org/wiki/Aerosol
has db xref: https://en.wikipedia.org/wiki/Particulates

anthropogenic ecosystem conversion process
type: Class
subclass of: anthropogenic environmental process
IAO_0000115: A process during which an ecosystem - natural or anthropised - is changed by the actions of humans.
created by: http://orcid.org/0000-0002-4366-3088

body of liquid
type: Class
subclass of: liquid astronomical body part
created by: http://orcid.org/0000-0002-4366-3088

liquid astronomical body part
type: Class
equivalent class: Class
  intersection of: fluid astronomical body part
  intersection of: Restriction
    on property: composed primarily of
    some values from: liquid environmental material
subclass of: fluid astronomical body part
subclass of: Restriction
  on property: composed primarily of
  some values from: liquid environmental material
IAO_0000115: A part of an astronomical body which is primarily composed of a continuous volume of liquid material, shaped by one or more environmental processes.
created by: http://orcid.org/0000-0002-4366-3088

Axiom
annotated source: liquid astronomical body part
annotated property: IAO_0000115
annotated target: A part of an astronomical body which is primarily composed of a continuous volume of liquid material, shaped by one or more environmental processes.
has db xref: https://en.wikipedia.org/wiki/Landform

gaseous astronomical body part
type: Class
equivalent class: Class
  intersection of: fluid astronomical body part
  intersection of: Restriction
    on property: composed primarily of
    some values from: gaseous environmental material
subclass of: fluid astronomical body part
subclass of: Restriction
  on property: composed primarily of
  some values from: gaseous environmental material
IAO_0000115: A part of an astronomical body which is primarily composed of a continuous volume of liquid material, shaped by one or more environmental processes.
created by: http://orcid.org/0000-0002-4366-3088

Axiom
annotated source: gaseous astronomical body part
annotated property: IAO_0000115
annotated target: A part of an astronomical body which is primarily composed of a continuous volume of liquid material, shaped by one or more environmental processes.
has db xref: https://en.wikipedia.org/wiki/Landform

fluid astronomical body part
type: Class
equivalent class: Class
  intersection of: astronomical body part
  intersection of: Restriction
    on property: composed primarily of
    some values from: Class
      union of: gaseous environmental material
      union of: liquid environmental material
subclass of: astronomical body part
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    union of: gaseous environmental material
    union of: liquid environmental material
IAO_0000115: A part of an astronomical body which is primarily composed of a continuous volume of liquid or gaseous material, shaped by one or more environmental processes.
created by: http://orcid.org/0000-0002-4366-3088
creation date: 2018-10-04T13:59:22Z

Axiom
annotated source: fluid astronomical body part
annotated property: IAO_0000115
annotated target: A part of an astronomical body which is primarily composed of a continuous volume of liquid or gaseous material, shaped by one or more environmental processes.
has db xref: https://en.wikipedia.org/wiki/Landform

surface of an astronomical body
type: Class
equivalent class: Class
  intersection of: surface layer
  intersection of: Restriction
    on property: part of
    some values from: astronomical body
subclass of: surface layer
subclass of: Class
  union of: Restriction
    on property: adjacent to
    some values from: atmosphere
  union of: Restriction
    on property: adjacent to
    some values from: outer space
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    union of: solid environmental material
    union of: liquid environmental material
IAO_0000115: A surface layer where the solid or liquid material of an astronomical body comes into contact with an atmosphere or outer space.
created by: http://orcid.org/0000-0002-4366-3088
creation date: 2018-10-04T16:55:57Z
comment: a useful class: this can be used to define sub-terrestrial and sub-marine entities

material congelation process
type: Class
subclass of: material transformation process
subclass of: Restriction
  on property: has output
  some values from: Class
    intersection of: environmental material
    intersection of: Restriction
      on property: has quality
      some values from: increased viscosity
IAO_0000115: A material transformation process during which a material's viscosity increase either through a reduction in temperature or through chemical reactions.
created by: http://orcid.org/0000-0002-4366-3088
creation date: 2019-01-14T18:47:32Z
has exact synonym: congelation
has exact synonym: congelation process
comment: Sometimes the increase in viscosity is great enough to crystallize or solidify the substance in question.

Axiom
annotated source: material congelation process
annotated property: IAO_0000115
annotated target: A material transformation process during which a material's viscosity increase either through a reduction in temperature or through chemical reactions.
has db xref: https://en.wikipedia.org/wiki/Congelation

Axiom
annotated source: material congelation process
annotated property: comment
annotated target: Sometimes the increase in viscosity is great enough to crystallize or solidify the substance in question.
has db xref: https://en.wikipedia.org/wiki/Congelation

frozen land
type: Class
equivalent class: Class
  intersection of: land
  intersection of: Restriction
    on property: has quality
    some values from: frozen
subclass of: land
subclass of: Restriction
  on property: has quality
  some values from: frozen
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    union of: rock
    union of: soil
IAO_0000115: Land which is below the freezing point of water.
created by: http://orcid.org/0000-0002-4366-3088
creation date: 2019-01-14T21:18:19Z
has db xref: http://sweetontology.net/realmCryo/FrozenGround
has exact synonym: frozen ground
comment: Perennially and seasonally frozen ground can vary from being partially to extensively frozen depending on the extent of the phase change. It may be described as hard frozen ground, plastic frozen ground, or dry frozen ground, depending on the pore ice and unfrozen water contents and its compressibility under load.

Axiom
annotated source: frozen land
annotated property: IAO_0000115
annotated target: Land which is below the freezing point of water.
has db xref: https://orcid.org/0000-0003-4808-4736

Axiom
annotated source: frozen land
annotated property: comment
annotated target: Perennially and seasonally frozen ground can vary from being partially to extensively frozen depending on the extent of the phase change. It may be described as hard frozen ground, plastic frozen ground, or dry frozen ground, depending on the pore ice and unfrozen water contents and its compressibility under load.
has db xref: https://orcid.org/0000-0003-4808-4736

frozen soil
type: Class
equivalent class: Class
  intersection of: soil
  intersection of: Restriction
    on property: has quality
    some values from: frozen
subclass of: soil
subclass of: ice
subclass of: Restriction
  on property: part of
  some values from: frozen land
subclass of: Restriction
  on property: has quality
  some values from: frozen
IAO_0000115: Soil which is below the freezing point of water.
created by: http://orcid.org/0000-0002-4366-3088
creation date: 2019-01-14T21:26:59Z

surface layer of a water body
type: Class
equivalent class: Class
  intersection of: water surface
  intersection of: Restriction
    on property: part of
    some values from: water body
subclass of: water surface
subclass of: hydroform
IAO_0000115: A water surface that is part of a water body.
created by: http://orcid.org/0000-0002-4366-3088
creation date: 2019-02-27T21:22:13Z

terrestrial ecoregion
type: Class
subclass of: ecoregion
subclass of: Restriction
  on property: adjacent to
  some values from: land
IAO_0000115: An ecoregion which is located on a landmass.
created by: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-05T17:40:44Z
has db xref: https://www.worldwildlife.org/biome-categories/terrestrial-ecoregions

sea surface layer
type: Class
equivalent class: Class
  intersection of: surface layer of a water body
  intersection of: Restriction
    on property: part of
    some values from: Class
      union of: ocean
      union of: sea
subclass of: marine layer
subclass of: surface layer of a water body
subclass of: Restriction
  on property: has part
  some values from: Class
    union of: oceanic sea surface microlayer biome
    union of: neritic sea surface microlayer biome
IAO_0000115: A surface layer of a water body which is part of an ocean or sea.
created by: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-06T01:22:01Z
in subset: envoMarine
comment: At this level, the depth of this layer is ambiguous. Some methods (telemetry) measure only the first few centimeters of the sea or ocean surface. In situ methods often sample the first few meters. Subclasses can be created for such cases.

environmental system process
type: Class
equivalent class: Class
  intersection of: process
  intersection of: Restriction
    on property: has participant
    some values from: Class
      union of: environmental feature
      union of: environmental material
      union of: environmental system
subclass of: process
subclass of: Restriction
  on property: has participant
  some values from: Class
    union of: environmental feature
    union of: environmental material
    union of: environmental system
IAO_0000115: A process in which includes the components of an environmental system as participants.
comment: This is a convenience class for organisation and should not be used for annotation.

atmospheric process
type: Class
equivalent class: Class
  intersection of: environmental system process
  intersection of: Restriction
    on property: occurs in
    some values from: atmosphere
subclass of: environmental system process
subclass of: Restriction
  on property: occurs in
  some values from: atmosphere
IAO_0000115: A process which occurs within an atmosphere.
comment: This class will be populated by inference and is primarily organisational.

anthropogenic modulatory intervention process
type: Class
equivalent class: Class
  intersection of: planned process
  intersection of: Restriction
    on property: regulates
    some values from: environmental system process
  intersection of: Restriction
    on property: obsolete has active participant
    some values from: Homo sapiens
subclass of: planned process
subclass of: Restriction
  on property: regulates
  some values from: environmental system process
subclass of: Restriction
  on property: obsolete has active participant
  some values from: Homo sapiens
IAO_0000115: A process during which humans apply technology to alter the magnitude, duration, rate, or impact of an environmental process.

anthropogenic environmental process
type: Class
equivalent class: Class
  intersection of: environmental system process
  intersection of: Restriction
    on property: obsolete has active participant
    some values from: Homo sapiens
subclass of: environmental system process
subclass of: Restriction
  on property: obsolete has active participant
  some values from: Homo sapiens
IAO_0000115: An environmental process which is driven by the action of humans.

planetary erosion
type: Class
subclass of: erosion
IAO_0000115: An action of exogenic processes (such as water flow or wind) which remove environmental material from one part of a planet's crust, transporting it to another location where it is deposited.
in subset: envoPolar

Axiom
annotated source: planetary erosion
annotated property: IAO_0000115
annotated target: An action of exogenic processes (such as water flow or wind) which remove environmental material from one part of a planet's crust, transporting it to another location where it is deposited.
has db xref: https://en.wikipedia.org/wiki/Erosion

hydrological process
type: Class
equivalent class: Class
  intersection of: environmental system process
  intersection of: Restriction
    on property: has participant
    some values from: Class
      union of: liquid water
      union of: water vapour
      union of: water ice
subclass of: environmental system process
subclass of: Restriction
  on property: has participant
  some values from: Class
    union of: water
    union of: water vapour
    union of: water ice
subclass of: Restriction
  on property: has participant
  some values from: Class
    union of: liquid water
    union of: water vapour
    union of: water ice
IAO_0000115: An environmental process which has water - in any of its states - as a participant.
comment: This classes asserted subclasses will be moved away as it should be an inferred class.

material accumulation process
type: Class
subclass of: environmental system process
subclass of: Restriction
  on property: during which ends
  some values from: Class
    union of: material transport process
    union of: material transformation process
subclass of: Restriction
  on property: has output
  some values from: Class
    intersection of: material entity
    intersection of: Restriction
      on property: has quality
      some values from: increased mass
IAO_0000115: A process during which the mass of one or more materials, present within a given site, increases.
IAO_0000117: http://orcid.org/0000-0002-3410-4655
IAO_0000117: http://orcid.org/0000-0002-4366-3088
in subset: envoPolar
comment: Experimental class for structural purposes not recommended for annotation. A material accumulation process ends a material transport process.

material transport process
type: Class
subclass of: environmental system process
subclass of: Restriction
  on property: has output
  some values from: Class
    intersection of: material entity
    intersection of: Restriction
      on property: has quality
      some values from: displaced
IAO_0000115: A process during which material is displaced from its original location and transported either to a new location or back to the original location.
IAO_0000117: http://orcid.org/0000-0002-3410-4655
IAO_0000117: http://orcid.org/0000-0002-4366-3088
in subset: envoPolar
comment: Experimental class for structural purposes not recommended for annotation.

geographic basin
type: Class
subclass of: depression
subclass of: Restriction
  on property: overlaps
  some values from: planetary crust
IAO_0000115: A depression which is part of a planetary crust, is of geographic scale, and is partially or completely enclosed.
IAO_0000116: The general semantics of depression and geographic basin are still to be worked out see https://github.com/EnvironmentOntology/envo/issues/486
IAO_0000117: http://orcid.org/0000-0002-3410-4655
IAO_0000117: http://orcid.org/0000-0002-4366-3088
in subset: envoPolar

Axiom
annotated source: geographic basin
annotated property: IAO_0000115
annotated target: A depression which is part of a planetary crust, is of geographic scale, and is partially or completely enclosed.
has db xref: https://en.wikipedia.org/wiki/Basin

marine sediment
type: Class
equivalent class: Class
  union of: Class
    intersection of: sediment
    intersection of: Restriction
      on property: overlaps
      some values from: marine water body
  union of: Class
    intersection of: sediment
    intersection of: Restriction
      on property: adjacent to
      some values from: marine water body
subclass of: sediment
subclass of: Restriction
  on property: adjacent to
  some values from: marine water body
subclass of: Restriction
  on property: output of
  some values from: sedimentation in a water body
IAO_0000115: Sediment which has been transported through the marine water column, settling on the seafloor.
IAO_0000117: http://orcid.org/0000-0002-3410-4655
IAO_0000117: http://orcid.org/0000-0002-4366-3088
has exact synonym: marine sediments
in subset: envoPolar
comment: Particles of marine sediment are primarily generated by 1) processes in terrestrial systems and transported to the marine realm by the action of rivers or aeolian processes (amongst other routes) , 2) marine organisms, 3) chemical processes in seawater, or 4) cosmogeneous input.

Axiom
annotated source: marine sediment
annotated property: IAO_0000115
annotated target: Sediment which has been transported through the marine water column, settling on the seafloor.
has db xref: https://en.wikipedia.org/wiki/Pelagic_sediment#_note-8

sedimentation in a water body
type: Class
subclass of: material accumulation process
subclass of: Restriction
  on property: has part
  some values from: precipitation process
subclass of: Restriction
  on property: occurs in
  some values from: water body
subclass of: Restriction
  on property: has participant
  some values from: particulate matter
subclass of: Restriction
  on property: ends
  some values from: material transport process
IAO_0000115: A material accumulation process during which solid particles are pulled through a water body by gravitation or centrifugal force and which ends when they settle on a solid surface.
IAO_0000117: http://orcid.org/0000-0002-3410-4655
IAO_0000117: http://orcid.org/0000-0002-4366-3088
in subset: envoPolar

material transformation process
type: Class
subclass of: environmental system process
subclass of: Restriction
  on property: has input
  some values from: environmental material
subclass of: Restriction
  on property: has output
  some values from: environmental material
IAO_0000115: A process during which a portion of some environmental material is converted into a different material or a collection of materials.
IAO_0000116: A different material transformation process class (or similarly named class) pertaining to the conversion of a specific chemical into another belongs in CHEBI and or REX ontologies.
IAO_0000117: http://orcid.org/0000-0002-3410-4655
IAO_0000117: http://orcid.org/0000-0002-4366-3088
in subset: envoPolar
comment: Experimental class for structural purposes not recommended for annotation. A material transformation process only refers to ENVO:environmental material classes (e.g. bulk and typically impure substances), rather than transformations converting a specific chemical into another.

cryoform
type: Class
equivalent class: Class
  intersection of: solid astronomical body part
  intersection of: Restriction
    on property: composed primarily of
    some values from: Class
      union of: permafrost
      union of: water ice
      union of: snow
subclass of: solid astronomical body part
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    union of: permafrost
    union of: water ice
    union of: snow
IAO_0000115: A geographic feature which is primarily composed of a continuous mass of snow and/or ice.
IAO_0000116: Place holder class. Also the axiom should be changed to something along the lines of 'primairly composed of’ some ‘environmental material’ and ‘has quality’ frozen once PATO:frozen is imported.
IAO_0000117: http://orcid.org/0000-0002-3410-4655
IAO_0000117: http://orcid.org/0000-0002-4366-3088
in subset: envoPolar

snow mass
type: Class
equivalent class: Class
  intersection of: object
  intersection of: Restriction
    on property: composed primarily of
    some values from: snow
subclass of: object
subclass of: Restriction
  on property: composed primarily of
  some values from: snow
IAO_0000115: A mass of snow.
IAO_0000117: http://orcid.org/0000-0002-3410-4655
IAO_0000117: http://orcid.org/0000-0002-4366-3088
in subset: envoPolar

temperature of environmental material
type: Class
equivalent class: Class
  intersection of: temperature
  intersection of: Restriction
    on property: inheres in
    some values from: environmental material
subclass of: temperature
subclass of: Restriction
  on property: inheres in
  some values from: environmental material
IAO_0000115: The temperature of some environmental material.
has exact synonym: environmental material temperature

temperature of air
type: Class
equivalent class: Class
  intersection of: temperature
  intersection of: Restriction
    on property: inheres in
    some values from: air
subclass of: temperature of environmental material
subclass of: Restriction
  on property: inheres in
  some values from: air
IAO_0000115: The temperature of some air.
has exact synonym: air temperature

porosity of soil
type: Class
equivalent class: Class
  intersection of: porosity
  intersection of: Restriction
    on property: inheres in
    some values from: soil
subclass of: structure of soil
subclass of: porosity
IAO_0000115: The porosity of some soil.
has exact synonym: soil porosity

composition of soil
type: Class
equivalent class: Class
  intersection of: composition
  intersection of: Restriction
    on property: inheres in
    some values from: soil
subclass of: structure of soil
subclass of: composition
IAO_0000115: The composition of some soil.
has exact synonym: soil composition

structure of soil
type: Class
equivalent class: Class
  intersection of: structure
  intersection of: Restriction
    on property: inheres in
    some values from: soil
subclass of: structure
subclass of: Restriction
  on property: inheres in
  some values from: soil
IAO_0000115: The structure of some soil.
has exact synonym: soil structure

temperature of soil
type: Class
equivalent class: Class
  intersection of: temperature
  intersection of: Restriction
    on property: inheres in
    some values from: soil
subclass of: temperature of environmental material
subclass of: Restriction
  on property: inheres in
  some values from: soil
IAO_0000115: The temperature of some soil.
has exact synonym: soil temperature

wetness of soil
type: Class
equivalent class: Class
  intersection of: wetness
  intersection of: Restriction
    on property: inheres in
    some values from: soil
subclass of: wetness
subclass of: Restriction
  on property: inheres in
  some values from: soil
IAO_0000115: The wetness of some soil.
has exact synonym: soil wetness

temperature of water
type: Class
equivalent class: Class
  intersection of: temperature
  intersection of: Restriction
    on property: inheres in
    some values from: liquid water
subclass of: temperature of environmental material
subclass of: Restriction
  on property: inheres in
  some values from: liquid water
IAO_0000115: The temperature of some water.
has exact synonym: water temperature

composition of water
type: Class
equivalent class: Class
  intersection of: composition
  intersection of: Restriction
    on property: inheres in
    some values from: liquid water
subclass of: composition
subclass of: Restriction
  on property: inheres in
  some values from: liquid water
IAO_0000115: The composition of some water.
has exact synonym: water composition

concentration of oxygen in water
type: Class
equivalent class: Class
  intersection of: concentration of
  intersection of: Restriction
    on property: inheres in
    some values from: Class
      intersection of: dioxygen
      intersection of: Restriction
        on property: part of
        some values from: liquid water
subclass of: food object quality
subclass of: concentration of
subclass of: Restriction
  on property: inheres in
  some values from: Class
    intersection of: dioxygen
    intersection of: Restriction
      on property: part of
      some values from: liquid water
IAO_0000115: The concentration of a oxygen when measured in water.
has exact synonym: water oxygen concentration

anatomical entity environment
type: Class
equivalent class: Class
  intersection of: environmental system
  intersection of: Restriction
    on property: determined by part of
    some values from: anatomical entity
subclass of: environmental system
subclass of: Restriction
  on property: part of
  some values from: environmental system determined by an organism
subclass of: Restriction
  on property: determined by part of
  some values from: anatomical entity
IAO_0000115: An environment which is determined by an anatomical entity.

concentration of dioxygen in water
type: Class
equivalent class: Class
  intersection of: concentration of
  intersection of: Restriction
    on property: inheres in
    some values from: Class
      intersection of: dioxygen
      intersection of: Restriction
        on property: part of
        some values from: liquid water
subclass of: food object quality
subclass of: concentration of
subclass of: Restriction
  on property: inheres in
  some values from: Class
    intersection of: dioxygen
    intersection of: Restriction
      on property: part of
      some values from: liquid water
IAO_0000115: The concentration of dioxygen when measured in water.
has exact synonym: water dioxygen concentration

foodon product type
type: Class
equivalent class: Class
  intersection of: food material
  intersection of: food product type
subclass of: food material
subclass of: food product type
IAO_0000115: A substance, usually composed primarily of carbohydrates, fats, water and/or proteins, that can be eaten or drunk by an animal or human being for nutrition or pleasure.
IAO_0000117: Damion Dooley
IAO_0000119: https://en.wikipedia.org/wiki/Food
has synonym: food product
comment: The FoodOn product type class is provided as a food product category tree under which new food product categories and food products themselves can be placed. This tree has upper level categories inspired from other product type schemes like the US Code of Federal Regulations. However it has a much greater depth to it than the other product type schemes in an effort to group related products together. The basis of this tree was inherited from the environment ontology (ENVO).

plant food product
type: Class
equivalent class: Class
  intersection of: food product by organism
  intersection of: Restriction
    on property: derives from
    some values from: whole plant
subclass of: crop residue
subclass of: food product by organism
subclass of: Restriction
  on property: derives from
  some values from: whole plant
IAO_0000114: requires discussion
IAO_0000115: This food product type includes food products which are derived from or produced by a plant.

vertebrate animal food product
type: Class
equivalent class: Class
  intersection of: food product by organism
  intersection of: Restriction
    on property: derives from
    some values from: vertebrate animal
subclass of: food product by organism
subclass of: Restriction
  on property: derives from
  some values from: vertebrate animal
IAO_0000114: ready for release
IAO_0000115: A food product which is derived from or produced by an animal that has a vertibrae.
IAO_0000117: Damion Dooley

invertebrate animal food product
type: Class
equivalent class: Class
  intersection of: food product by organism
  intersection of: Restriction
    on property: derives from
    some values from: invertebrate animal
subclass of: food product by organism
subclass of: Restriction
  on property: derives from
  some values from: invertebrate animal

food component
type: Class
subclass of: foodon product type
label: food component product

food product by organism
type: Class
subclass of: foodon product type

food material
type: Class
equivalent class: Class
  intersection of: environmental material
  intersection of: Restriction
    on property: has role
    some values from: food
subclass of: environmental material
subclass of: Restriction
  on property: has role
  some values from: food
has synonym: food

invertebrate animal
type: Class
subclass of: animal
IAO_0000115: Invertebrates are animals that neither possess nor develop a vertebral column (commonly known as a backbone or spine), derived from the notochord. This includes all animals apart from the subphylum Vertebrata.
has broad synonym: animal

food object quality
type: Class
equivalent class: Restriction
  on property: inheres in
  some values from: food material
subclass of: physical object quality
subclass of: Restriction
  on property: inheres in
  some values from: food material

animal
type: Class
subclass of: food source
IAO_0000115: A multicellular eukaryotic heterotrophic organism within the kingdom Animalia.

vegetarian food product
type: Class
equivalent class: Class
  intersection of: foodon product type
  intersection of: Class
    complement of: Restriction
      on property: derives from
      some values from: Class
        union of: invertebrate animal
        union of: vertebrate animal
subclass of: food product by organism
IAO_0000114: ready for release
IAO_0000115: A food product not including meat and animal tissue products (such as gelatin or animal-derived rennet).
IAO_0000117: http://orcid.org/0000-0002-8844-9165
IAO_0000119: https://en.wikipedia.org/wiki/Vegetarian_cuisine
date: 2019-09-11T21:12:43Z
has exact synonym: vegetarian food

food product type
type: Class
subclass of: material entity
IAO_0000114: requires discussion
IAO_0000115: A food product type is a class of food products that is differentiated by its food composition, processing and/or consumption characteristics. This does not include brand name products but it may include generic food dish categories.
IAO_0000117: Damion Dooley
IAO_0000412: http://langual.org
has db xref: http://www.langual.org/langual_thesaurus.asp
comment: LanguaL curation note: This term is for CLASSIFICATION ONLY; DO NOT USE term in indexing. Use a more precise narrower term.

chemical food component
type: Class
subclass of: food component
IAO_0000114: requires discussion
IAO_0000412: http://langual.org
has db xref: http://www.langual.org/langual_thesaurus.asp
comment: LanguaL curation note: A chemical food component is a food substance derived from a nonliving source (e.g., salt, water or synthesized compounds).
label: chemical food product

mammal
type: Class
equivalent class: Class
  intersection of: vertebrate animal food product
  intersection of: vertebrate animal
subclass of: vertebrate animal food product
subclass of: vertebrate animal
IAO_0000115: Mammals (from Latin mamma "breast") are vertebrate animals constituting the class Mammalia, and characterized by the presence of mammary glands which in females produce milk for feeding (nursing) their young, a neocortex (a region of the brain), fur or hair, and three middle ear bones.

vertebrate animal
type: Class
subclass of: animal
IAO_0000115: A vertebrate animal is any species of organism within the subphylum Vertebrata (chordates with backbones). Vertebrates represent the overwhelming majority of the phylum Chordata, with currently about 69,276 species described.
has broad synonym: animal

food source
type: Class
subclass of: environmental material
IAO_0000114: requires discussion
IAO_0000412: http://langual.org
has db xref: http://www.langual.org/langual_thesaurus.asp
comment: This was LanguaL definition: Individual plant or animal from which the food product or its major ingredient is derived; also a chemical food source [FDA CFSAN 1995].

food additive
type: Class
subclass of: chemical food component
IAO_0000114: requires discussion
IAO_0000119: This section and its narrover terms refer to the European Commission food additive regulation according to COMMISSION REGULATION (EU) No 1129/2011 of 11 November 2011 amending Annex II to Regulation (EC) No 1333/2008 of the European Parliament and of the Council by establishing a Union list of food additives [http://eur-lex.europa.eu/LexUriServ/LexUriServ.do?uri=OJ:L:2011:295:0001:0177:EN:PDF] and its basis, the four Food Additive Directives: the EEC Framework Directive on Food Additives (89/107/EEC), the Directive on colours (94/36/EC), the Directive on sweeteners (94/35/EC) and the 'miscellaneous' Directive (95/2/EC) plus amendments [http://ec.europa.eu/food/fs/sfp/flav_index_en.html] and/or Codex Alimentarius Commission General Standard for Food Additives (CODEX STAN 192, revised 2011) [http://www.codexalimentarius.net/download/standards/4/CXS_192e.pdf]. If used for food supplement substances, thissection and its narrover terms refer to the European Commission regulation in general [http://ec.europa.eu/food/food/labellingnutrition/supplements/index_en.htm] and specifically to the EC Directive on the approximation of the laws of the Members States relating to food supplements (2002/46/EC) [http://eur-lex.europa.eu/LexUriServ/LexUriServ.do?uri=OJ:L:2002:183:0051:0057:EN:PDF].
IAO_0000412: http://langual.org
has db xref: http://www.langual.org/langual_thesaurus.asp
comment: Damion Dooley's note: manysubclasses here are currently originating from LanguaL additives that have not yet been matched to CHEBI ontology terms. If matches are possible they will be implemented over time, at which point the corresponding FoodOn id's will be deprecated.

molecular_function
type: Class
subclass of: process
IAO_0000115: A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process.
IAO_0000589: molecular process
has exact synonym: molecular function

Axiom
annotated source: molecular_function
annotated property: IAO_0000115
annotated target: A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process.
has db xref: GOC:pdt

catalytic activity
type: Class
subclass of: molecular_function

receptor activity
type: Class

signaling receptor binding
type: Class
subclass of: protein binding
IAO_0000115: Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
has broad synonym: receptor binding
has narrow synonym: receptor ligand
has related synonym: receptor-associated protein activity

Axiom
annotated source: signaling receptor binding
annotated property: IAO_0000115
annotated target: Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
has db xref: GOC:bf
has db xref: GOC:ceb
has db xref: ISBN:0198506732

binding
type: Class
subclass of: molecular_function
IAO_0000115: The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
has narrow synonym: ligand

Axiom
annotated source: binding
annotated property: IAO_0000115
annotated target: The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
has db xref: GOC:ceb
has db xref: GOC:mah
has db xref: ISBN:0198506732

protein binding
type: Class
subclass of: binding
IAO_0000115: Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
has exact synonym: protein amino acid binding
has narrow synonym: glycoprotein binding

Axiom
annotated source: protein binding
annotated property: IAO_0000115
annotated target: Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
has db xref: GOC:go_curators

cell communication
type: Class
subclass of: cellular process
IAO_0000115: Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.

Axiom
annotated source: cell communication
annotated property: IAO_0000115
annotated target: Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.
has db xref: GOC:mah

signal transduction
type: Class
subclass of: cellular process
subclass of: regulation of cellular process
subclass of: Restriction
  on property: part of
  some values from: cell communication
subclass of: Restriction
  on property: part of
  some values from: signaling
subclass of: Restriction
  on property: part of
  some values from: cellular response to stimulus
IAO_0000115: The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
has narrow synonym: signaling cascade
has narrow synonym: signalling cascade
has related synonym: signaling pathway
has related synonym: signalling pathway

Axiom
annotated source: signal transduction
annotated property: IAO_0000115
annotated target: The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
has db xref: GOC:go_curators
has db xref: GOC:mtg_signaling_feb11

Axiom
annotated source: signal transduction
annotated property: hasRelatedSynonym
annotated target: signalling pathway
has db xref: GOC:mah

biological_process
type: Class
subclass of: process
disjoint with: planned process
IAO_0000115: A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.
IAO_0000115: Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
created by: janelomax
creation date: 2012-09-19T15:05:24Z
has alternative id: GO:0000004
has alternative id: GO:0007582
has alternative id: GO:0044699
has db xref: Wikipedia:Biological_process
has exact synonym: biological process
has exact synonym: physiological process
has OBO namespace: biological_process
has related synonym: single organism process
has related synonym: single-organism process
id: GO:0008150
in subset: goslim aspergillus
in subset: goslim candida
in subset: goslim chembl
in subset: goslim generic
in subset: goslim metagenomics
in subset: goslim pir
in subset: goslim plant
in subset: goslim pombe
in subset: goslim yeast
comment: Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this.

Axiom
annotated source: biological_process
annotated property: IAO_0000115
annotated target: A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.
has db xref: GOC:pdt

Axiom
annotated source: biological_process
annotated property: IAO_0000115
annotated target: Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
has db xref: GOC:go_curators
has db xref: GOC:isa_complete

regulation of signal transduction
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: signal transduction
subclass of: regulation of cell communication
subclass of: regulation of signaling
subclass of: regulation of response to stimulus
subclass of: Restriction
  on property: regulates
  some values from: signal transduction
IAO_0000115: Any process that modulates the frequency, rate or extent of signal transduction.
has related synonym: regulation of signaling pathway
has related synonym: regulation of signalling pathway

Axiom
annotated source: regulation of signal transduction
annotated property: IAO_0000115
annotated target: Any process that modulates the frequency, rate or extent of signal transduction.
has db xref: GOC:sm

Axiom
annotated source: regulation of signal transduction
annotated property: hasRelatedSynonym
annotated target: regulation of signalling pathway
has db xref: GOC:mah

cellular process
type: Class
subclass of: biological_process
IAO_0000115: Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
has exact synonym: cell physiology
has exact synonym: cellular physiological process
has narrow synonym: cell growth and/or maintenance
has related synonym: single-organism cellular process

Axiom
annotated source: cellular process
annotated property: IAO_0000115
annotated target: Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
has db xref: GOC:go_curators
has db xref: GOC:isa_complete

regulation of cell communication
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: cell communication
subclass of: regulation of cellular process
subclass of: Restriction
  on property: regulates
  some values from: cell communication
IAO_0000115: Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.

Axiom
annotated source: regulation of cell communication
annotated property: IAO_0000115
annotated target: Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.
has db xref: GOC:dph
has db xref: GOC:tb

kinase activity
type: Class
subclass of: transferase activity, transferring phosphorus-containing groups
subclass of: Restriction
  on property: is kinase activity
  has self: true

transferase activity
type: Class
subclass of: catalytic activity

transferase activity, transferring phosphorus-containing groups
type: Class
subclass of: transferase activity

regulation of signaling
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: signaling
subclass of: regulation of biological process
subclass of: Restriction
  on property: regulates
  some values from: signaling
IAO_0000115: Any process that modulates the frequency, rate or extent of a signaling process.
has related synonym: regulation of signaling process
has related synonym: regulation of signalling process

Axiom
annotated source: regulation of signaling
annotated property: IAO_0000115
annotated target: Any process that modulates the frequency, rate or extent of a signaling process.
has db xref: GOC:mtg_signal

Axiom
annotated source: regulation of signaling
annotated property: hasRelatedSynonym
annotated target: regulation of signaling process
has db xref: GOC:bf

Axiom
annotated source: regulation of signaling
annotated property: hasRelatedSynonym
annotated target: regulation of signalling process
has db xref: GOC:mah

signaling
type: Class
subclass of: biological_process
IAO_0000115: The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered.
has exact synonym: biological signaling
has exact synonym: signaling process
has exact synonym: signalling
has related synonym: signalling process
has related synonym: single organism signaling

Axiom
annotated source: signaling
annotated property: IAO_0000115
annotated target: The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered.
has db xref: GOC:mtg_signal
has db xref: GOC:mtg_signaling_feb11
has db xref: GOC:signaling

Axiom
annotated source: signaling
annotated property: hasRelatedSynonym
annotated target: signalling process
has db xref: GOC:mah

receptor regulator activity
type: Class
subclass of: molecular function regulator
IAO_0000115: The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is changed.

Axiom
annotated source: receptor regulator activity
annotated property: IAO_0000115
annotated target: The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is changed.
has db xref: GOC:ceb

signaling receptor activator activity
type: Class
subclass of: receptor regulator activity
IAO_0000115: The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased.
has broad synonym: receptor activator activity

Axiom
annotated source: signaling receptor activator activity
annotated property: IAO_0000115
annotated target: The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased.
has db xref: GOC:ceb

regulation of protein binding
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: protein binding
subclass of: regulation of binding
subclass of: Restriction
  on property: regulates
  some values from: protein binding
IAO_0000115: Any process that modulates the frequency, rate or extent of protein binding.

Axiom
annotated source: regulation of protein binding
annotated property: IAO_0000115
annotated target: Any process that modulates the frequency, rate or extent of protein binding.
has db xref: GOC:go_curators

receptor ligand activity
type: Class
subclass of: signaling receptor binding
subclass of: signaling receptor activator activity
subclass of: Restriction
  on property: part of
  some values from: signal transduction
IAO_0000115: The activity of a gene product that interacts with a receptor to effect a change in the activity of the receptor. Ligands may be produced by the same, or different, cell that expresses the receptor. Ligands may diffuse extracellularly from their point of origin to the receiving cell, or remain attached to an adjacent cell surface (e.g. Notch ligands).
has broad synonym: receptor agonist activity
has exact synonym: signaling molecule
has exact synonym: signaling receptor ligand activity
has narrow synonym: vitamin D receptor activator activity

Axiom
annotated source: receptor ligand activity
annotated property: IAO_0000115
annotated target: The activity of a gene product that interacts with a receptor to effect a change in the activity of the receptor. Ligands may be produced by the same, or different, cell that expresses the receptor. Ligands may diffuse extracellularly from their point of origin to the receiving cell, or remain attached to an adjacent cell surface (e.g. Notch ligands).
has db xref: GOC:kv
has db xref: GOC:molecular_function_refactoring
has db xref: GOC:pdt

Axiom
annotated source: receptor ligand activity
annotated property: hasBroadSynonym
annotated target: receptor agonist activity
has db xref: GOC:molecular_function_refactoring

regulation of response to stimulus
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: response to stimulus
subclass of: regulation of biological process
subclass of: Restriction
  on property: regulates
  some values from: response to stimulus
IAO_0000115: Any process that modulates the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.

Axiom
annotated source: regulation of response to stimulus
annotated property: IAO_0000115
annotated target: Any process that modulates the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.
has db xref: GOC:jid

regulation of biological process
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: biological_process
subclass of: biological regulation
subclass of: Restriction
  on property: regulates
  some values from: biological_process
IAO_0000115: Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
has exact synonym: regulation of physiological process

Axiom
annotated source: regulation of biological process
annotated property: IAO_0000115
annotated target: Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
has db xref: GOC:ai
has db xref: GOC:go_curators

regulation of cellular process
type: Class
equivalent class: Class
  intersection of: biological regulation
  intersection of: Restriction
    on property: regulates
    some values from: cellular process
subclass of: regulation of biological process
subclass of: Restriction
  on property: regulates
  some values from: cellular process
IAO_0000115: Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
has exact synonym: regulation of cellular physiological process

Axiom
annotated source: regulation of cellular process
annotated property: IAO_0000115
annotated target: Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
has db xref: GOC:go_curators

response to stimulus
type: Class
subclass of: biological_process
IAO_0000115: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
has exact synonym: physiological response to stimulus

Axiom
annotated source: response to stimulus
annotated property: IAO_0000115
annotated target: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
has db xref: GOC:ai
has db xref: GOC:bf

regulation of binding
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: binding
subclass of: regulation of molecular function
subclass of: Restriction
  on property: regulates
  some values from: binding
IAO_0000115: Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule.

Axiom
annotated source: regulation of binding
annotated property: IAO_0000115
annotated target: Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule.
has db xref: GOC:ai

cellular response to stimulus
type: Class
subclass of: cellular process
subclass of: response to stimulus
IAO_0000115: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell.

Axiom
annotated source: cellular response to stimulus
annotated property: IAO_0000115
annotated target: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell.
has db xref: GOC:bf
has db xref: GOC:jl

biological regulation
type: Class
subclass of: biological_process
IAO_0000115: Any process that modulates a measurable attribute of any biological process, quality or function.
has broad synonym: regulation

Axiom
annotated source: biological regulation
annotated property: IAO_0000115
annotated target: Any process that modulates a measurable attribute of any biological process, quality or function.
has db xref: GOC:dph
has db xref: GOC:isa_complete
has db xref: GOC:mah
has db xref: GOC:pr
has db xref: GOC:vw

regulation of molecular function
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: molecular_function
subclass of: biological regulation
subclass of: Restriction
  on property: regulates
  some values from: molecular_function
IAO_0000115: Any process that modulates the frequency, rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding.
has exact synonym: regulation of a molecular function

Axiom
annotated source: regulation of molecular function
annotated property: IAO_0000115
annotated target: Any process that modulates the frequency, rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding.
has db xref: GOC:isa_complete

molecular function regulator
type: Class
subclass of: molecular_function
subclass of: Restriction
  on property: part of
  some values from: regulation of molecular function
IAO_0000115: A molecular function that modulates the activity of a gene product or complex. Examples include enzyme regulators and channel regulators.

Axiom
annotated source: molecular function regulator
annotated property: IAO_0000115
annotated target: A molecular function that modulates the activity of a gene product or complex. Examples include enzyme regulators and channel regulators.
has db xref: GOC:dos
has db xref: GOC:pt

regulation of receptor binding
type: Class
equivalent class: Class
  intersection of: biological_process
  intersection of: Restriction
    on property: regulates
    some values from: signaling receptor binding
subclass of: regulation of protein binding
subclass of: Restriction
  on property: regulates
  some values from: signaling receptor binding
IAO_0000115: Any process that modulates the frequency, rate or extent of a protein or other molecule binding to a receptor.
has narrow synonym: regulation of receptor ligand

Axiom
annotated source: regulation of receptor binding
annotated property: IAO_0000115
annotated target: Any process that modulates the frequency, rate or extent of a protein or other molecule binding to a receptor.
has db xref: GOC:TermGenie
has db xref: GOC:signaling

Axiom
annotated source: regulation of receptor binding
annotated property: hasNarrowSynonym
annotated target: regulation of receptor ligand
has db xref: GOC:TermGenie

measurement unit label
type: Class
subclass of: datum label
IAO_0000115: A measurement unit label is as a label that is part of a scalar measurement datum and denotes a unit of measure.

objective specification
type: Class
subclass of: directive information entity
IAO_0000115: a directive information entity that describes an intended process endpoint. When part of a plan specification the concretization is realized in a planned process in which the bearer tries to effect the world so that the process endpoint is achieved.
has exact synonym: experiment objective

action specification
type: Class
subclass of: directive information entity
IAO_0000115: a directive information entity that describes an action the bearer will take

datum label
type: Class
subclass of: information content entity
IAO_0000115: A label is a symbol that is part of some other datum and is used to either partially define the denotation of that datum or to provide a means for identifying the datum as a member of the set of data with the same label

software
type: Class
subclass of: plan specification
IAO_0000115: Software is a plan specification composed of a series of instructions that can be interpreted by or directly executed by a processing unit.

information carrier
type: Class
equivalent class: Class
  intersection of: quality
  intersection of: Restriction
    on property: concretizes
    some values from: information content entity
subclass of: quality
subclass of: Restriction
  on property: concretizes
  some values from: information content entity
IAO_0000115: A quality of an information bearer that imparts the information content

data item
type: Class
subclass of: information content entity
IAO_0000111: data item
IAO_0000112: Data items include counts of things, analyte concentrations, and statistical summaries.
IAO_0000114: pending final vetting
IAO_0000115: a data item is an information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements.
IAO_0000116: 2/2/2009 Alan and Bjoern discussing FACS run output data. This is a data item because it is about the cell population. Each element records an event and is typically further composed a set of measurment data items that record the fluorescent intensity stimulated by one of the lasers.
IAO_0000116: 2009-03-16: data item deliberatly ambiguous: we merged data set and datum to be one entity, not knowing how to define singular versus plural. So data item is more general than datum.
IAO_0000116: 2009-03-16: removed datum as alternative term as datum specifically refers to singular form, and is thus not an exact synonym.
IAO_0000116: 2014-03-31: See discussion at http://odontomachus.wordpress.com/2014/03/30/aboutness-objects-propositions/
IAO_0000116: JAR: datum -- well, this will be very tricky to define, but maybe some information-like stuff that might be put into a computer and that is meant, by someone, to denote and/or to be interpreted by some process... I would include lists, tables, sentences... I think I might defer to Barry, or to Brian Cantwell Smith JAR: A data item is an approximately justified approximately true approximate belief
IAO_0000117: PERSON: Alan Ruttenberg
IAO_0000117: PERSON: Chris Stoeckert
IAO_0000117: PERSON: Jonathan Rees
IAO_0000118: data
IAO_0000412: obi.owl

symbol
type: Class
subclass of: information content entity
IAO_0000111: symbol
IAO_0000112: a serial number such as "12324X"
IAO_0000112: a stop sign
IAO_0000112: a written proper name such as "OBI"
IAO_0000114: pending final vetting
IAO_0000115: An information content entity that is a mark(s) or character(s) used as a conventional representation of another entity.
IAO_0000116: 20091104, MC: this needs work and will most probably change
IAO_0000116: 2014-03-31: We would like to have a deeper analysis of 'mark' and 'sign' in the future (see https://github.com/information-artifact-ontology/IAO/issues/154).
IAO_0000117: PERSON: James A. Overton
IAO_0000117: PERSON: Jonathan Rees
IAO_0000119: based on Oxford English Dictionary

information content entity
type: Class
subclass of: generically dependent continuant
subclass of: Restriction
  on property: is about
  some values from: entity
IAO_0000111: information content entity
IAO_0000112: Examples of information content entites include journal articles, data, graphical layouts, and graphs.
IAO_0000114: ready for release
IAO_0000115: A generically dependent continuant that is about some thing.
IAO_0000116: 2014-03-10: The use of "thing" is intended to be general enough to include universals and configurations (see https://groups.google.com/d/msg/information-ontology/GBxvYZCk1oc/-L6B5fSBBTQJ).
IAO_0000116: information_content_entity 'is_encoded_in' some digital_entity in obi before split (040907). information_content_entity 'is_encoded_in' some physical_document in obi before split (040907). Previous. An information content entity is a non-realizable information entity that 'is encoded in' some digital or physical entity.
IAO_0000117: PERSON: Chris Stoeckert
IAO_0000119: OBI_0000142
IAO_0000412: obi.owl

directive information entity
type: Class
subclass of: information content entity
subclass of: Restriction
  on property: is about
  some values from: realizable entity
IAO_0000115: An information content entity whose concretizations indicate to their bearer how to realize them in a process.

dot plot
type: Class
subclass of: graph
IAO_0000115: A dot plot is a report graph which is a graphical representation of data where each data point is represented by a single dot placed on coordinates corresponding to data point values in particular dimensions.

graph
type: Class
subclass of: diagram
IAO_0000115: A diagram that presents one or more tuples of information by mapping those tuples in to a two dimensional space in a non arbitrary way.

algorithm
type: Class
subclass of: plan specification
IAO_0000115: A plan specification which describes the inputs and output of mathematical functions as well as workflow of execution for achieving an predefined objective. Algorithms are realized usually by means of implementation as computer programs for execution by automata.

curation status specification
type: Class
equivalent class: Class
  one of: example to be eventually removed
  one of: metadata complete
  one of: organizational term
  one of: ready for release
  one of: metadata incomplete
  one of: uncurated
  one of: pending final vetting
  one of: to be replaced with external ontology term
  one of: requires discussion
subclass of: data about an ontology part
IAO_0000111: curation status specification
IAO_0000114: pending final vetting
IAO_0000115: The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.
IAO_0000116: Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting)
IAO_0000117: PERSON:Bill Bug
IAO_0000119: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
IAO_0000119: OBI_0000266
IAO_0000412: obi.owl

data format specification
type: Class
subclass of: directive information entity
IAO_0000115: A data format specification is the information content borne by the document published defining the specification. Example: The ISO document specifying what encompasses an XML document; The instructions in a XSD file

data set
type: Class
subclass of: data item
IAO_0000111: data set
IAO_0000112: Intensity values in a CEL file or from multiple CEL files comprise a data set (as opposed to the CEL files themselves).
IAO_0000114: pending final vetting
IAO_0000115: A data item that is an aggregate of other data items of the same type that have something in common. Averages and distributions can be determined for data sets.
IAO_0000116: 2009/10/23 Alan Ruttenberg. The intention is that this term represent collections of like data. So this isn't for, e.g. the whole contents of a cel file, which includes parameters, metadata etc. This is more like java arrays of a certain rather specific type
IAO_0000116: 2014-05-05: Data sets are aggregates and thus must include two or more data items. We have chosen not to add logical axioms to make this restriction.
IAO_0000117: person:Allyson Lister
IAO_0000117: person:Chris Stoeckert
IAO_0000119: OBI_0000042
IAO_0000119: group:OBI

image
type: Class
subclass of: figure
IAO_0000115: An image is an affine projection to a two dimensional surface, of measurements of some quality of an entity or entities repeated at regular intervals across a spatial range, where the measurements are represented as color and luminosity on the projected on surface.

data about an ontology part
type: Class
subclass of: data item
IAO_0000115: data about an ontology part is a data item about a part of an ontology, for example a term
IAO_0000117: Person:Alan Ruttenberg
IAO_0000412: obi.owl

plan specification
type: Class
subclass of: directive information entity
subclass of: Restriction
  on property: has part
  some values from: objective specification
subclass of: Restriction
  on property: has part
  some values from: action specification
IAO_0000115: A directive information entity with action specifications and objective specifications as parts that, when concretized, is realized in a process in which the bearer tries to achieve the objectives by taking the actions specified.

material information bearer
type: Class
equivalent class: Class
  intersection of: material entity
  intersection of: Restriction
    on property: bearer of
    some values from: Restriction
      on property: concretizes
      some values from: information content entity
subclass of: material entity
subclass of: Restriction
  on property: bearer of
  some values from: Restriction
    on property: concretizes
    some values from: information content entity
IAO_0000115: A material entity in which a concretization of an information content entity inheres.

histogram
type: Class
subclass of: graph
IAO_0000115: A histogram is a report graph which is a statistical description of a distribution in terms of occurrence frequencies of different event classes.

heatmap
type: Class
subclass of: graph
IAO_0000115: A heatmap is a report graph which is a graphical representation of data where the values taken by a variable(s) are shown as colors in a two-dimensional map.

dendrogram
type: Class
subclass of: graph
IAO_0000115: A dendrogram is a report graph which is a tree diagram frequently used to illustrate the arrangement of the clusters produced by a clustering algorithm.

scatter plot
type: Class
subclass of: graph
IAO_0000115: A scatterplot is a graph which uses Cartesian coordinates to display values for two variables for a set of data. The data is displayed as a collection of points, each having the value of one variable determining the position on the horizontal axis and the value of the other variable determining the position on the vertical axis.

obsolescence reason specification
type: Class
equivalent class: Class
  one of: failed exploratory term
  one of: placeholder removed
  one of: terms merged
  one of: term imported
  one of: term split
subclass of: data about an ontology part
IAO_0000111: obsolescence reason specification
IAO_0000114: pending final vetting
IAO_0000115: The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.
IAO_0000116: The creation of this class has been inspired in part by Werner Ceusters' paper, Applying evolutionary terminology auditing to the Gene Ontology.
IAO_0000117: PERSON: Alan Ruttenberg
IAO_0000117: PERSON: Melanie Courtot

figure
type: Class
subclass of: information content entity
IAO_0000115: An information content entity consisting of a two dimensional arrangement of information content entities such that the arrangement itself is about something.

diagram
type: Class
subclass of: figure
IAO_0000115: A figure that expresses one or more propositions

document
type: Class
subclass of: information content entity
IAO_0000115: A collection of information content entities intended to be understood together as a whole

denotator type
type: Class
equivalent class: Class
  one of: universal
  one of: defined class
  one of: named class expression
subclass of: data about an ontology part
IAO_0000112: The Basic Formal Ontology ontology makes a distinction between Universals and defined classes, where the formal are "natural kinds" and the latter arbitrary collections of entities.
IAO_0000115: A denotator type indicates how a term should be interpreted from an ontological perspective.
IAO_0000117: Alan Ruttenberg
IAO_0000119: Barry Smith, Werner Ceusters

centrally registered identifier symbol
type: Class
subclass of: symbol
subclass of: Restriction
  on property: part of
  some values from: centrally registered identifier
IAO_0000112: The sentence "The article has Pubmed ID 12345." contains a CRID that has two parts: one part is the CRID symbol, which is '12345'; the other part denotes the CRID registry, which is Pubmed.
IAO_0000114: metadata complete
IAO_0000115: A symbol that is part of a CRID and that is sufficient to look up a record from the CRID's registry.
IAO_0000117: PERSON: Alan Ruttenberg
IAO_0000117: PERSON: Bill Hogan
IAO_0000117: PERSON: Bjoern Peters
IAO_0000117: PERSON: Melanie Courtot
IAO_0000118: CRID symbol
IAO_0000119: Original proposal from Bjoern, discussions at IAO calls

centrally registered identifier
type: Class
subclass of: information content entity
subclass of: Restriction
  on property: has part
  some values from: centrally registered identifier symbol
subclass of: Restriction
  on property: has part
  some values from: Restriction
    on property: denotes
    some values from: centrally registered identifier registry
IAO_0000112: The sentence "The article has Pubmed ID 12345." contains a CRID that has two parts: one part is the CRID symbol, which is '12345'; the other part denotes the CRID registry, which is Pubmed.
IAO_0000114: metadata complete
IAO_0000115: An information content entity that consists of a CRID symbol and additional information about the CRID registry to which it belongs.
IAO_0000116: 2014-05-05: In defining this term we take no position on what the CRID denotes. In particular do not assume it denotes a *record* in the CRID registry (since the registry might not have 'records').
IAO_0000116: Alan, IAO call 20101124: potentially the CRID denotes the instance it was associated with during creation.
IAO_0000116: Note, IAO call 20101124: URIs are not always CRID, as not centrally registered. We acknowledge that CRID is a subset of a larger identifier class, but this subset fulfills our current needs. OBI PURLs are CRID as they are registered with OCLC. UPCs (Universal Product Codes from AC Nielsen)are not CRID as they are not centrally registered.
IAO_0000117: PERSON: Alan Ruttenberg
IAO_0000117: PERSON: Bill Hogan
IAO_0000117: PERSON: Bjoern Peters
IAO_0000117: PERSON: Melanie Courtot
IAO_0000118: CRID
IAO_0000119: Original proposal from Bjoern, discussions at IAO calls

centrally registered identifier registry
type: Class
subclass of: data set
IAO_0000112: PubMed is a CRID registry. It has a dataset of PubMed identifiers associated with journal articles.
IAO_0000114: metadata complete
IAO_0000115: A CRID registry is a dataset of CRID records, each consisting of a CRID symbol and additional information which was recorded in the dataset through a assigning a centrally registered identifier process.
IAO_0000117: PERSON: Alan Ruttenberg
IAO_0000117: PERSON: Bill Hogan
IAO_0000117: PERSON: Bjoern Peters
IAO_0000117: PERSON: Melanie Courtot
IAO_0000118: CRID registry
IAO_0000119: Original proposal from Bjoern, discussions at IAO calls

root
type: Class
subclass of: material entity
has db xref: GC_ID:1
has OBO namespace: ncbi_taxonomy
has related synonym: all
id: NCBITaxon:1

Axiom
annotated source: root
annotated property: hasRelatedSynonym
annotated target: all
has synonym type: synonym

Axiom
annotated source: root
annotated property: hasRelatedSynonym
annotated target: all
has synonym type: synonym

Viruses
type: Class
subclass of: root
subclass of: organism
has related synonym: Vira
has related synonym: Viridae
has related synonym: viruses

Axiom
annotated source: Viruses
annotated property: hasRelatedSynonym
annotated target: Vira
has synonym type: synonym

Axiom
annotated source: Viruses
annotated property: hasRelatedSynonym
annotated target: Viridae
has synonym type: synonym

Axiom
annotated source: Viruses
annotated property: hasRelatedSynonym
annotated target: viruses
has synonym type: blast name

Teleostomi
type: Class
subclass of: Gnathostomata <vertebrate>

Euteleostomi
type: Class
subclass of: Teleostomi
has exact synonym: bony vertebrates

Axiom
annotated source: Euteleostomi
annotated property: hasExactSynonym
annotated target: bony vertebrates
has synonym type: genbank common name

cellular organisms
type: Class
subclass of: root
has db xref: GC_ID:1
has OBO namespace: ncbi_taxonomy
has related synonym: biota
id: NCBITaxon:131567

Axiom
annotated source: cellular organisms
annotated property: hasRelatedSynonym
annotated target: biota
has synonym type: synonym

Axiom
annotated source: cellular organisms
annotated property: hasRelatedSynonym
annotated target: biota
has synonym type: synonym

Dipnotetrapodomorpha
type: Class
subclass of: Sarcopterygii

Boreoeutheria
type: Class
subclass of: Eutheria
has related synonym: Boreotheria

Axiom
annotated source: Boreoeutheria
annotated property: hasRelatedSynonym
annotated target: Boreotheria
has synonym type: synonym

Bacteria
type: Class
subclass of: cellular organisms
subclass of: organism
has exact synonym: eubacteria
has related synonym: Monera
has related synonym: Procaryotae
has related synonym: Prokaryota
has related synonym: Prokaryotae
has related synonym: bacteria
has related synonym: not Bacteria Haeckel 1894
has related synonym: prokaryote
has related synonym: prokaryotes

Axiom
annotated source: Bacteria
annotated property: hasExactSynonym
annotated target: eubacteria
has synonym type: genbank common name

Axiom
annotated source: Bacteria
annotated property: hasRelatedSynonym
annotated target: Monera
has synonym type: in part

Axiom
annotated source: Bacteria
annotated property: hasRelatedSynonym
annotated target: Procaryotae
has synonym type: in part

Axiom
annotated source: Bacteria
annotated property: hasRelatedSynonym
annotated target: Prokaryota
has synonym type: in part

Axiom
annotated source: Bacteria
annotated property: hasRelatedSynonym
annotated target: Prokaryotae
has synonym type: in part

Axiom
annotated source: Bacteria
annotated property: hasRelatedSynonym
annotated target: bacteria
has synonym type: blast name

Axiom
annotated source: Bacteria
annotated property: hasRelatedSynonym
annotated target: not Bacteria Haeckel 1894
has synonym type: synonym

Axiom
annotated source: Bacteria
annotated property: hasRelatedSynonym
annotated target: prokaryote
has synonym type: in part

Axiom
annotated source: Bacteria
annotated property: hasRelatedSynonym
annotated target: prokaryotes
has synonym type: in part

Homininae
type: Class
subclass of: Hominidae
has related synonym: Homo/Pan/Gorilla group

Axiom
annotated source: Homininae
annotated property: hasRelatedSynonym
annotated target: Homo/Pan/Gorilla group
has synonym type: synonym

Archaea
type: Class
subclass of: cellular organisms
subclass of: organism
has related synonym: Archaebacteria
has related synonym: Mendosicutes
has related synonym: Metabacteria
has related synonym: Monera
has related synonym: Procaryotae
has related synonym: Prokaryota
has related synonym: Prokaryotae
has related synonym: archaea
has related synonym: prokaryote
has related synonym: prokaryotes

Axiom
annotated source: Archaea
annotated property: hasRelatedSynonym
annotated target: Archaebacteria
has synonym type: synonym

Axiom
annotated source: Archaea
annotated property: hasRelatedSynonym
annotated target: Mendosicutes
has synonym type: synonym

Axiom
annotated source: Archaea
annotated property: hasRelatedSynonym
annotated target: Metabacteria
has synonym type: synonym

Axiom
annotated source: Archaea
annotated property: hasRelatedSynonym
annotated target: Monera
has synonym type: in part

Axiom
annotated source: Archaea
annotated property: hasRelatedSynonym
annotated target: Procaryotae
has synonym type: in part

Axiom
annotated source: Archaea
annotated property: hasRelatedSynonym
annotated target: Prokaryota
has synonym type: in part

Axiom
annotated source: Archaea
annotated property: hasRelatedSynonym
annotated target: Prokaryotae
has synonym type: in part

Axiom
annotated source: Archaea
annotated property: hasRelatedSynonym
annotated target: archaea
has synonym type: blast name

Axiom
annotated source: Archaea
annotated property: hasRelatedSynonym
annotated target: prokaryote
has synonym type: in part

Axiom
annotated source: Archaea
annotated property: hasRelatedSynonym
annotated target: prokaryotes
has synonym type: in part

Eukaryota
type: Class
subclass of: cellular organisms
subclass of: organism
IAO_0000412: ncbitaxon.owl
has rank: NCBITaxon superkingdom
has db xref: GC_ID:1
has db xref: PMID:23020233
has db xref: PMID:30257078
has exact synonym: eucaryotes
has exact synonym: eukaryotes
has OBO namespace: ncbi_taxonomy
has related synonym: Eucarya
has related synonym: Eucaryotae
has related synonym: Eukarya
has related synonym: Eukaryotae
has related synonym: eukaryotes
id: NCBITaxon:2759

Axiom
annotated source: Eukaryota
annotated property: hasExactSynonym
annotated target: eucaryotes
has synonym type: genbank common name

Axiom
annotated source: Eukaryota
annotated property: hasExactSynonym
annotated target: eucaryotes
has synonym type: genbank common name

Axiom
annotated source: Eukaryota
annotated property: hasExactSynonym
annotated target: eukaryotes
has synonym type: common name

Axiom
annotated source: Eukaryota
annotated property: hasExactSynonym
annotated target: eukaryotes
has synonym type: common name

Axiom
annotated source: Eukaryota
annotated property: hasRelatedSynonym
annotated target: Eucarya
has synonym type: synonym

Axiom
annotated source: Eukaryota
annotated property: hasRelatedSynonym
annotated target: Eucarya
has synonym type: synonym

Axiom
annotated source: Eukaryota
annotated property: hasRelatedSynonym
annotated target: Eucaryotae
has synonym type: synonym

Axiom
annotated source: Eukaryota
annotated property: hasRelatedSynonym
annotated target: Eucaryotae
has synonym type: synonym

Axiom
annotated source: Eukaryota
annotated property: hasRelatedSynonym
annotated target: Eukarya
has synonym type: synonym

Axiom
annotated source: Eukaryota
annotated property: hasRelatedSynonym
annotated target: Eukarya
has synonym type: synonym

Axiom
annotated source: Eukaryota
annotated property: hasRelatedSynonym
annotated target: Eukaryotae
has synonym type: synonym

Axiom
annotated source: Eukaryota
annotated property: hasRelatedSynonym
annotated target: Eukaryotae
has synonym type: synonym

Axiom
annotated source: Eukaryota
annotated property: hasRelatedSynonym
annotated target: eukaryotes
has synonym type: blast name

Axiom
annotated source: Eukaryota
annotated property: hasRelatedSynonym
annotated target: eukaryotes
has synonym type: blast name

Euarchontoglires
type: Class
subclass of: Boreoeutheria

Simiiformes
type: Class
subclass of: Haplorrhini
has related synonym: Anthropoidea

Axiom
annotated source: Simiiformes
annotated property: hasRelatedSynonym
annotated target: Anthropoidea
has synonym type: synonym

Hominoidea
type: Class
subclass of: Catarrhini
has exact synonym: ape
has exact synonym: apes

Axiom
annotated source: Hominoidea
annotated property: hasExactSynonym
annotated target: ape
has synonym type: common name

Axiom
annotated source: Hominoidea
annotated property: hasExactSynonym
annotated target: apes
has synonym type: genbank common name

Tetrapoda
type: Class
subclass of: Dipnotetrapodomorpha
has exact synonym: tetrapods

Axiom
annotated source: Tetrapoda
annotated property: hasExactSynonym
annotated target: tetrapods
has synonym type: genbank common name

Amniota
type: Class
subclass of: Tetrapoda
has exact synonym: amniotes

Axiom
annotated source: Amniota
annotated property: hasExactSynonym
annotated target: amniotes
has synonym type: genbank common name

Theria <Mammalia>
type: Class
subclass of: Mammalia
has exact synonym: Theria
label: Theria <mammals>

Axiom
annotated source: Theria <Mammalia>
annotated property: hasExactSynonym
annotated target: Theria
has synonym type: scientific name

Viridiplantae
type: Class
subclass of: Eukaryota
IAO_0000412: ncbitaxon.owl
has exact synonym: Chlorophyta/Embryophyta group
has exact synonym: chlorophyte/embryophyte group
has exact synonym: green plants
has related synonym: Chlorobionta
has related synonym: Chlorophyta/Embryophyta group
has related synonym: Chloroplastida
has related synonym: chlorophyte/embryophyte group
has related synonym: green plants

Axiom
annotated source: Viridiplantae
annotated property: hasExactSynonym
annotated target: Chlorophyta/Embryophyta group
has synonym type: equivalent name

Axiom
annotated source: Viridiplantae
annotated property: hasExactSynonym
annotated target: chlorophyte/embryophyte group
has synonym type: equivalent name

Axiom
annotated source: Viridiplantae
annotated property: hasExactSynonym
annotated target: green plants
has synonym type: common name

Axiom
annotated source: Viridiplantae
annotated property: hasExactSynonym
annotated target: green plants
has synonym type: common name

Axiom
annotated source: Viridiplantae
annotated property: hasRelatedSynonym
annotated target: Chlorobionta
has synonym type: synonym

Axiom
annotated source: Viridiplantae
annotated property: hasRelatedSynonym
annotated target: Chlorobionta
has synonym type: synonym

Axiom
annotated source: Viridiplantae
annotated property: hasRelatedSynonym
annotated target: Chlorophyta/Embryophyta group
has synonym type: synonym

Axiom
annotated source: Viridiplantae
annotated property: hasRelatedSynonym
annotated target: Chlorophyta/Embryophyta group
has synonym type: synonym

Axiom
annotated source: Viridiplantae
annotated property: hasRelatedSynonym
annotated target: Chloroplastida
has synonym type: synonym

Axiom
annotated source: Viridiplantae
annotated property: hasRelatedSynonym
annotated target: chlorophyte/embryophyte group
has synonym type: synonym

Axiom
annotated source: Viridiplantae
annotated property: hasRelatedSynonym
annotated target: chlorophyte/embryophyte group
has synonym type: synonym

Axiom
annotated source: Viridiplantae
annotated property: hasRelatedSynonym
annotated target: green plants
has synonym type: blast name

Axiom
annotated source: Viridiplantae
annotated property: hasRelatedSynonym
annotated target: green plants
has synonym type: blast name

Opisthokonta
type: Class
subclass of: Eukaryota
has db xref: GC_ID:1
has OBO namespace: ncbi_taxonomy
has related synonym: Fungi/Metazoa group
has related synonym: opisthokonts
id: NCBITaxon:33154

Axiom
annotated source: Opisthokonta
annotated property: hasRelatedSynonym
annotated target: Fungi/Metazoa group
has synonym type: synonym

Axiom
annotated source: Opisthokonta
annotated property: hasRelatedSynonym
annotated target: Fungi/Metazoa group
has synonym type: synonym

Axiom
annotated source: Opisthokonta
annotated property: hasRelatedSynonym
annotated target: opisthokonts
has synonym type: synonym

Axiom
annotated source: Opisthokonta
annotated property: hasRelatedSynonym
annotated target: opisthokonts
has synonym type: synonym

Metazoa
type: Class
subclass of: Opisthokonta
has exact synonym: metazoans
has exact synonym: multicellular animals
has related synonym: Animalia
has related synonym: animals

Axiom
annotated source: Metazoa
annotated property: hasExactSynonym
annotated target: metazoans
has synonym type: genbank common name

Axiom
annotated source: Metazoa
annotated property: hasExactSynonym
annotated target: multicellular animals
has synonym type: common name

Axiom
annotated source: Metazoa
annotated property: hasRelatedSynonym
annotated target: Animalia
has synonym type: synonym

Axiom
annotated source: Metazoa
annotated property: hasRelatedSynonym
annotated target: animals
has synonym type: blast name

Bilateria
type: Class
subclass of: Eumetazoa

Deuterostomia
type: Class
subclass of: Bilateria
has exact synonym: deuterostomes

Axiom
annotated source: Deuterostomia
annotated property: hasExactSynonym
annotated target: deuterostomes
has synonym type: common name

Haplorrhini
type: Class
subclass of: Primates

Mammalia
type: Class
subclass of: Amniota
has exact synonym: mammals
has related synonym: mammals

Axiom
annotated source: Mammalia
annotated property: hasExactSynonym
annotated target: mammals
has synonym type: genbank common name

Axiom
annotated source: Mammalia
annotated property: hasRelatedSynonym
annotated target: mammals
has synonym type: blast name

Eumetazoa
type: Class
subclass of: Metazoa

Chordata
type: Class
subclass of: Deuterostomia
has exact synonym: chordates
has related synonym: chordates

Axiom
annotated source: Chordata
annotated property: hasExactSynonym
annotated target: chordates
has synonym type: genbank common name

Axiom
annotated source: Chordata
annotated property: hasRelatedSynonym
annotated target: chordates
has synonym type: blast name

Vertebrata <Metazoa>
type: Class
subclass of: Craniata <chordata>
has exact synonym: Vertebrata
has exact synonym: vertebrates
has related synonym: vertebrates
label: Vertebrata <vertebrates>

Axiom
annotated source: Vertebrata <Metazoa>
annotated property: hasExactSynonym
annotated target: Vertebrata
has synonym type: scientific name

Axiom
annotated source: Vertebrata <Metazoa>
annotated property: hasExactSynonym
annotated target: vertebrates
has synonym type: genbank common name

Axiom
annotated source: Vertebrata <Metazoa>
annotated property: hasRelatedSynonym
annotated target: vertebrates
has synonym type: blast name

Gnathostomata <vertebrate>
type: Class
subclass of: Vertebrata <Metazoa>
has exact synonym: Gnathostomata
has exact synonym: jawed vertebrates
label: Gnathostomata <vertebrates>

Axiom
annotated source: Gnathostomata <vertebrate>
annotated property: hasExactSynonym
annotated target: Gnathostomata
has synonym type: scientific name

Axiom
annotated source: Gnathostomata <vertebrate>
annotated property: hasExactSynonym
annotated target: jawed vertebrates
has synonym type: genbank common name

Sarcopterygii
type: Class
subclass of: Euteleostomi

Craniata <chordata>
type: Class
subclass of: Chordata
has exact synonym: Craniata
label: Craniata <chordates>

Axiom
annotated source: Craniata <chordata>
annotated property: hasExactSynonym
annotated target: Craniata
has synonym type: scientific name

Eutheria
type: Class
subclass of: Theria <Mammalia>
has exact synonym: eutherian mammals
has exact synonym: placental mammals
has exact synonym: placentals
has related synonym: Placentalia
has related synonym: placentals

Axiom
annotated source: Eutheria
annotated property: hasExactSynonym
annotated target: eutherian mammals
has synonym type: common name

Axiom
annotated source: Eutheria
annotated property: hasExactSynonym
annotated target: placental mammals
has synonym type: common name

Axiom
annotated source: Eutheria
annotated property: hasExactSynonym
annotated target: placentals
has synonym type: genbank common name

Axiom
annotated source: Eutheria
annotated property: hasRelatedSynonym
annotated target: Placentalia
has synonym type: synonym

Axiom
annotated source: Eutheria
annotated property: hasRelatedSynonym
annotated target: placentals
has synonym type: blast name

Primates
type: Class
subclass of: Euarchontoglires
has exact synonym: primate
has related synonym: Primata
has related synonym: primates

Axiom
annotated source: Primates
annotated property: hasExactSynonym
annotated target: primate
has synonym type: equivalent name

Axiom
annotated source: Primates
annotated property: hasRelatedSynonym
annotated target: Primata
has synonym type: synonym

Axiom
annotated source: Primates
annotated property: hasRelatedSynonym
annotated target: primates
has synonym type: blast name

Catarrhini
type: Class
subclass of: Simiiformes

Hominidae
type: Class
subclass of: Hominoidea
has exact synonym: great apes
has related synonym: Pongidae

Axiom
annotated source: Hominidae
annotated property: hasExactSynonym
annotated target: great apes
has synonym type: genbank common name

Axiom
annotated source: Hominidae
annotated property: hasRelatedSynonym
annotated target: Pongidae
has synonym type: synonym

Homo
type: Class
subclass of: Homininae
has exact synonym: humans

Axiom
annotated source: Homo
annotated property: hasExactSynonym
annotated target: humans
has synonym type: common name

Homo sapiens
type: Class
subclass of: Homo
has exact synonym: human
has exact synonym: man
has related synonym: humans

Axiom
annotated source: Homo sapiens
annotated property: hasExactSynonym
annotated target: human
has synonym type: genbank common name

Axiom
annotated source: Homo sapiens
annotated property: hasExactSynonym
annotated target: man
has synonym type: common name

planned process
type: Class
equivalent class: Restriction
  on property: BFO_0000055
  some values from: Restriction
    on property: concretizes
    some values from: plan specification
equivalent class: Restriction
  on property: has start date
  some values from: dateTime
equivalent class: Restriction
  on property: has end date
  some values from: dateTime
subclass of: process
subclass of: Restriction
  on property: BFO_0000055
  some values from: Restriction
    on property: concretizes
    some values from: plan specification
IAO_0000115: A processual entity that realizes a plan which is the concretization of a plan specification.

regulator role
type: Class
subclass of: regulatory role
IAO_0000115: a regulatory role involved with making and/or enforcing relevant legislation and governmental orders

regulatory role
type: Class
subclass of: role
IAO_0000115: a role which inheres in material entities and is realized in the processes of making, enforcing or being defined by legislation or orders issued by a governmental body.

material supplier role
type: Class
subclass of: service provider role
IAO_0000115: a role realized through the process of supplying materials such as animal subjects, reagents or other materials used in an investigation.

classified data set
type: Class
equivalent class: Restriction
  on property: OBI_0000312
  some values from: class prediction data transformation
subclass of: data set
subclass of: Restriction
  on property: OBI_0000312
  some values from: class prediction data transformation
IAO_0000115: A data set that is produced as the output of a class prediction data transformation and consists of a data set with assigned class labels.

processed material
type: Class
equivalent class: Class
  intersection of: material entity
  intersection of: Restriction
    on property: OBI_0000312
    some values from: material processing
subclass of: material entity
subclass of: Restriction
  on property: OBI_0000312
  some values from: material processing
IAO_0000115: Is a material entity that is created or changed during material processing.

material processing
type: Class
equivalent class: Restriction
  on property: OBI_0000417
  some values from: material transformation objective
subclass of: planned process
subclass of: Restriction
  on property: OBI_0000299
  some values from: processed material
subclass of: Restriction
  on property: OBI_0000417
  some values from: material transformation objective
subclass of: Restriction
  on property: OBI_0000293
  all values from: material entity
IAO_0000115: A planned process which results in physical changes in a specified input material

specimen role
type: Class
subclass of: role
subclass of: Restriction
  on property: inheres in
  some values from: Class
    intersection of: material entity
    intersection of: Restriction
      on property: OBI_0000312
      some values from: specimen collection process
IAO_0000115: a role borne by a material entity that is gained during a specimen collection process and that can be realized by use of the specimen in an investigation

organization
type: Class
subclass of: material entity
IAO_0000115: An entity that can bear roles, has members, and has a set of organization rules. Members of organizations are either organizations themselves or individual people. Members can bear specific organization member roles that are determined in the organization rules. The organization rules also determine how decisions are made on behalf of the organization by the organization members.

protocol
type: Class
subclass of: plan specification
IAO_0000115: A plan specification which has sufficient level of detail and quantitative information to communicate it between investigation agents, so that different investigation agents will reliably be able to independently reproduce the process.

regulatory agency
type: Class
equivalent class: Class
  intersection of: organization
  intersection of: Restriction
    on property: has role
    some values from: regulator role
subclass of: organization
subclass of: Restriction
  on property: has role
  some values from: regulator role
IAO_0000115: A regulatory agency is a organization that has responsibility over or for the legislation (acts and regulations) for a given sector of the government.

material transformation objective
type: Class
subclass of: objective specification
IAO_0000115: an objective specifiction that creates an specific output object from input materials.

manufacturing
type: Class
equivalent class: Restriction
  on property: OBI_0000417
  some values from: manufacturing objective
subclass of: material processing
subclass of: Restriction
  on property: OBI_0000293
  some values from: material entity
subclass of: Restriction
  on property: OBI_0000417
  some values from: manufacturing objective
IAO_0000115: Manufacturing is a process with the intent to produce a processed material which will have a function for future use. A person or organization (having manufacturer role) is a participant in this process

manufacturing objective
type: Class
subclass of: material transformation objective
IAO_0000115: is the objective to manufacture a material of a certain function (device)

study design execution
type: Class
equivalent class: Class
  intersection of: planned process
  intersection of: Restriction
    on property: BFO_0000055
    some values from: Restriction
      on property: concretizes
      some values from: study design
subclass of: planned process
subclass of: Restriction
  on property: BFO_0000055
  some values from: Restriction
    on property: concretizes
    some values from: study design
IAO_0000115: a planned process that carries out a study design

manufacturer role
type: Class
subclass of: role
subclass of: Restriction
  on property: inheres in
  some values from: Class
    union of: Homo sapiens
    union of: organization
subclass of: Restriction
  on property: BFO_0000054
  all values from: manufacturing
IAO_0000115: Manufacturer role is a role which inheres in a person or organization and which is realized by a manufacturing process.

clustered data set
type: Class
equivalent class: Restriction
  on property: OBI_0000312
  some values from: class discovery data transformation
subclass of: data set
subclass of: Restriction
  on property: OBI_0000312
  some values from: class discovery data transformation
IAO_0000115: A data set that is produced as the output of a class discovery data transformation and consists of a data set with assigned discovered class labels.

specimen collection process
type: Class
equivalent class: Class
  intersection of: planned process
  intersection of: Restriction
    on property: OBI_0000417
    some values from: specimen collection objective
subclass of: planned process
subclass of: Restriction
  on property: OBI_0000293
  some values from: material entity
subclass of: Restriction
  on property: OBI_0000299
  some values from: specimen
subclass of: Restriction
  on property: OBI_0000417
  some values from: specimen collection objective
IAO_0000115: A planned process with the objective of collecting a specimen.

class prediction data transformation
type: Class
equivalent class: Class
  union of: Restriction
    on property: OBI_0000299
    some values from: classified data set
  union of: Restriction
    on property: OBI_0000417
    some values from: class prediction objective
subclass of: data transformation
IAO_0000115: A class prediction data transformation (sometimes called supervised classification) is a data transformation that has objective class prediction.

specimen collection objective
type: Class
subclass of: objective specification
IAO_0000115: A objective specification to obtain a material entity for potential use as an input during an investigation.

support vector machine
type: Class
subclass of: class prediction data transformation
subclass of: Restriction
  on property: OBI_0000417
  some values from: class prediction objective
IAO_0000115: A support vector machine is a data transformation with a class prediction objective based on the construction of a separating hyperplane that maximizes the margin between two data sets of vectors in n-dimensional space.

decision tree induction objective
type: Class
subclass of: data transformation objective
IAO_0000115: A decision tree induction objective is a data transformation objective in which a tree-like graph of edges and nodes is created and from which the selection of each branch requires that some type of logical decision is made.

decision tree building data transformation
type: Class
equivalent class: Restriction
  on property: OBI_0000417
  some values from: decision tree induction objective
subclass of: data transformation
subclass of: Restriction
  on property: OBI_0000417
  some values from: decision tree induction objective
IAO_0000115: A decision tree building data transformation is a data transformation that has objective decision tree induction.

GenePattern software
type: Class
subclass of: software
IAO_0000115: a software that provides access to more than 100 tools for gene expression analysis, proteomics, SNP analysis and common data processing tasks.

peak matching
type: Class
subclass of: data transformation
IAO_0000115: Peak matching is a data transformation performed on a dataset of a graph of ordered data points (e.g. a spectrum) with the objective of pattern matching local maxima above a noise threshold

k-nearest neighbors
type: Class
subclass of: partitioning data transformation
subclass of: class discovery data transformation
subclass of: Class
  intersection of: Restriction
    on property: OBI_0000299
    some values from: clustered data set
  intersection of: Restriction
    on property: OBI_0000417
    some values from: class discovery objective
IAO_0000115: A k-nearest neighbors is a data transformation which achieves a class discovery or partitioning objective, in which an input data object with vector y is assigned to a class label based upon the k closest training data set points to y; where k is the largest value that class label is assigned.

CART
type: Class
subclass of: decision tree building data transformation
IAO_0000115: A CART (classification and regression trees) is a data transformation method for producing a classification or regression model with a tree-based structure.

statistical model validation
type: Class
equivalent class: Restriction
  on property: OBI_0000417
  some values from: cross validation objective
subclass of: partitioning data transformation
subclass of: Restriction
  on property: OBI_0000417
  some values from: cross validation objective
IAO_0000115: A data transformation which assesses how the results of a statistical analysis will generalize to an independent data set.

manufacturer
type: Class
equivalent class: Class
  intersection of: Class
    union of: Homo sapiens
    union of: organization
  intersection of: Restriction
    on property: has role
    some values from: manufacturer role
subclass of: material entity
subclass of: Restriction
  on property: has role
  some values from: manufacturer role
IAO_0000115: A person or organization that has a manufacturer role

service provider role
type: Class
subclass of: role
subclass of: Restriction
  on property: inheres in
  some values from: Class
    union of: Homo sapiens
    union of: organization
subclass of: Restriction
  on property: BFO_0000054
  all values from: planned process
IAO_0000115: is a role which inheres in a person or organization and is realized in in a planned process which provides access to training, materials or execution of protocols for an organization or person

processed specimen
type: Class
equivalent class: Class
  intersection of: processed material
  intersection of: specimen
subclass of: processed material
subclass of: specimen
IAO_0000115: A specimen that has been intentionally physically modified.

categorical label
type: Class
subclass of: datum label
IAO_0000115: A label that is part of a categorical datum and that indicates the value of the data item on the categorical scale.

questionnaire
type: Class
subclass of: document
IAO_0000115: A document with a set of printed or written questions with a choice of answers, devised for the purposes of a survey or statistical study.

categorical value specification
type: Class
subclass of: value specification
IAO_0000115: A value specification that is specifies one category out of a fixed number of nominal categories

value specification
type: Class
subclass of: information content entity
IAO_0000115: An information content entity that specifies a value within a classification scheme or on a quantitative scale.

collection of specimens
type: Class
equivalent class: Class
  intersection of: material entity
  intersection of: Restriction
    on property: has member
    all values from: specimen
subclass of: material entity
IAO_0000115: A material entity that has two or more specimens as its parts.

histologic grade according to AJCC 7th edition
type: Class
subclass of: categorical value specification
IAO_0000115: A categorical value specification that is a histologic grade assigned to a tumor slide specimen according to the American Joint Committee on Cancer (AJCC) 7th Edition grading system.

histologic grade according to the Fuhrman Nuclear Grading System
type: Class
subclass of: categorical value specification
IAO_0000115: A categorical value specification that is a histologic grade assigned to a tumor slide specimen according to the Fuhrman Nuclear Grading System.

histologic grade for ovarian tumor
type: Class
subclass of: categorical value specification
IAO_0000115: A categorical value specification that is a histologic grade assigned to a ovarian tumor.

histologic grade for ovarian tumor according to a two-tier grading system
type: Class
subclass of: histologic grade for ovarian tumor
IAO_0000115: A histologic grade for ovarian tumor that is from a two-tier histological classification of tumors.

histologic grade for ovarian tumor according to the World Health Organization
type: Class
subclass of: histologic grade for ovarian tumor
IAO_0000115: A histologic grade for ovarian tumor that is from a histological classification by the World Health Organization (WHO).

pathologic primary tumor stage for colon and rectum according to AJCC 7th edition
type: Class
subclass of: categorical value specification
IAO_0000115: A categorical value specification that is a pathologic finding about one or more characteristics of colorectal cancer following the rules of the TNM American Joint Committee on Cancer (AJCC) version 7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.

pathologic primary tumor stage for lung according to AJCC 7th edition
type: Class
subclass of: categorical value specification
IAO_0000115: A categorical value specification that is a pathologic finding about one or more characteristics of lung cancer following the rules of the TNM American Joint Committee on Cancer (AJCC) version 7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.

pathologic primary tumor stage for kidney according to AJCC 7th edition
type: Class
subclass of: categorical value specification
IAO_0000115: A categorical value specification that is a pathologic finding about one or more characteristics of renal cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.

pathologic primary tumor stage for ovary according to AJCC 7th edition
type: Class
subclass of: categorical value specification
IAO_0000115: A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.

pathologic lymph node stage for colon and rectum according to AJCC 7th edition
type: Class
subclass of: categorical value specification
IAO_0000115: A categorical value specification that is a pathologic finding about one or more characteristics of colorectal cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes.

pathologic lymph node stage for lung according to AJCC 7th edition
type: Class
subclass of: categorical value specification
IAO_0000115: A categorical value specification that is a pathologic finding about one or more characteristics of lung cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes.

pathologic lymph node stage for kidney according to AJCC 7th edition
type: Class
subclass of: categorical value specification
IAO_0000115: A categorical value specification that is a pathologic finding about one or more characteristics of renal cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes.

pathologic lymph node stage for ovary according to AJCC 7th edition
type: Class
subclass of: categorical value specification
IAO_0000115: A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes.

pathologic distant metastases stage for colon according to AJCC 7th edition
type: Class
subclass of: categorical value specification
IAO_0000115: A categorical value specification that is a pathologic finding about one or more characteristics of colon cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.

pathologic distant metastases stage for lung according to AJCC 7th edition
type: Class
subclass of: categorical value specification
IAO_0000115: A categorical value specification that is a pathologic finding about one or more characteristics of lung cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.

pathologic distant metastases stage for kidney according to AJCC 7th edition
type: Class
subclass of: categorical value specification
IAO_0000115: A categorical value specification that is a pathologic finding about one or more characteristics of renal cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.

pathologic distant metastases stage for ovary according to AJCC 7th edition
type: Class
subclass of: categorical value specification
IAO_0000115: A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.

clinical tumor stage group according to AJCC 7th edition
type: Class
subclass of: categorical value specification
IAO_0000115: A categorical value specification that is an assessment of the stage of a cancer according to the American Joint Committee on Cancer (AJCC) v7 staging systems.

International Federation of Gynecology and Obstetrics cervical cancer stage value specification
type: Class
subclass of: categorical value specification
IAO_0000115: A categorical value specification that is an assessment of the stage of a gynecologic cancer according to the International Federation of Gynecology and Obstetrics (FIGO) staging systems.

International Federation of Gynecology and Obstetrics ovarian cancer stage value specification
type: Class
subclass of: categorical value specification
IAO_0000115: A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the FIGO classification system.

performance status value specification
type: Class
subclass of: categorical value specification
IAO_0000115: A categorical value specification that is an assessment of a participant's performance status (general well-being and activities of daily life).

Eastern Cooperative Oncology Group score value specification
type: Class
subclass of: performance status value specification
IAO_0000115: A performance status value specification designed by the Eastern Cooperative Oncology Group to assess disease progression and its affect on the daily living abilities of the patient.

Karnofsky score vaue specification
type: Class
subclass of: performance status value specification
IAO_0000115: A performance status value specification designed for classifying patients 16 years of age or older by their functional impairment.

organism
type: Class
equivalent class: Class
  union of: Viruses
  union of: Bacteria
  union of: Archaea
  union of: Eukaryota
subclass of: material entity
IAO_0000111: organism
IAO_0000112: animal
IAO_0000112: fungus
IAO_0000112: plant
IAO_0000112: virus
IAO_0000114: ready for release
IAO_0000115: A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs.
IAO_0000116: 10/21/09: This is a placeholder term, that should ideally be imported from the NCBI taxonomy, but the high level hierarchy there does not suit our needs (includes plasmids and 'other organisms')
IAO_0000116: 13-02-2009: OBI doesn't take position as to when an organism starts or ends being an organism - e.g. sperm, foetus. This issue is outside the scope of OBI.
IAO_0000117: GROUP: OBI Biomaterial Branch
IAO_0000119: WEB: http://en.wikipedia.org/wiki/Organism
IAO_0000412: obi.owl

specimen
type: Class
equivalent class: Class
  intersection of: material entity
  intersection of: Restriction
    on property: has role
    some values from: specimen role
subclass of: material entity
subclass of: Restriction
  on property: has role
  some values from: specimen role
IAO_0000115: A material entity that has the specimen role.

data transformation
type: Class
equivalent class: Restriction
  on property: OBI_0000417
  some values from: data transformation objective
subclass of: planned process
subclass of: Restriction
  on property: BFO_0000055
  some values from: Restriction
    on property: concretizes
    some values from: Class
      intersection of: algorithm
      intersection of: Restriction
        on property: has part
        some values from: objective specification
subclass of: Restriction
  on property: OBI_0000417
  some values from: data transformation objective
subclass of: Restriction
  on property: OBI_0000293
  all values from: data item
IAO_0000115: A planned process that produces output data from input data.

leave one out cross validation method
type: Class
subclass of: statistical model validation
IAO_0000115: is a data transformation : leave-one-out cross-validation (LOOCV) involves using a single observation from the original sample as the validation data, and the remaining observations as the training data. This is repeated such that each observation in the sample is used once as the validation data

k-means clustering
type: Class
subclass of: partitioning data transformation
subclass of: class discovery data transformation
subclass of: Class
  intersection of: Restriction
    on property: OBI_0000299
    some values from: clustered data set
  intersection of: Restriction
    on property: OBI_0000417
    some values from: class discovery objective
IAO_0000115: A k-means clustering is a data transformation which achieves a class discovery or partitioning objective, which takes as input a collection of objects (represented as points in multidimensional space) and which partitions them into a specified number k of clusters. The algorithm attempts to find the centers of natural clusters in the data. The most common form of the algorithm starts by partitioning the input points into k initial sets, either at random or using some heuristic data. It then calculates the mean point, or centroid, of each set. It constructs a new partition by associating each point with the closest centroid. Then the centroids are recalculated for the new clusters, and the algorithm repeated by alternate applications of these two steps until convergence, which is obtained when the points no longer switch clusters (or alternatively centroids are no longer changed).

hierarchical clustering
type: Class
subclass of: class discovery data transformation
subclass of: Class
  intersection of: Restriction
    on property: OBI_0000299
    some values from: clustered data set
  intersection of: Restriction
    on property: OBI_0000417
    some values from: class discovery objective
IAO_0000115: A hierarchical clustering is a data transformation which achieves a class discovery objective, which takes as input data item and builds a hierarchy of clusters. The traditional representation of this hierarchy is a tree (visualized by a dendrogram), with the individual input objects at one end (leaves) and a single cluster containing every object at the other (root).

dimensionality reduction
type: Class
subclass of: class discovery data transformation
subclass of: Class
  intersection of: Restriction
    on property: OBI_0000299
    some values from: clustered data set
  intersection of: Restriction
    on property: OBI_0000417
    some values from: class discovery objective
IAO_0000115: A dimensionality reduction is data partitioning which transforms each input m-dimensional vector (x_1, x_2, ..., x_m) into an output n-dimensional vector (y_1, y_2, ..., y_n), where n is smaller than m.

principal components analysis dimensionality reduction
type: Class
subclass of: dimensionality reduction
IAO_0000115: A principal components analysis dimensionality reduction is a dimensionality reduction achieved by applying principal components analysis and by keeping low-order principal components and excluding higher-order ones.

data visualization
type: Class
subclass of: planned process
subclass of: Restriction
  on property: OBI_0000293
  some values from: data item
subclass of: Restriction
  on property: OBI_0000299
  some values from: Class
    union of: graph
    union of: image
subclass of: Restriction
  on property: OBI_0000293
  all values from: data item
subclass of: Restriction
  on property: OBI_0000299
  all values from: Class
    union of: graph
    union of: image
IAO_0000115: An planned process that creates images, diagrams or animations from the input data.

data transformation objective
type: Class
subclass of: objective specification
IAO_0000115: An objective specification to transformation input data into output data

partitioning data transformation
type: Class
equivalent class: Restriction
  on property: OBI_0000417
  some values from: partitioning objective
subclass of: data transformation
subclass of: Restriction
  on property: OBI_0000417
  some values from: partitioning objective
IAO_0000115: A partitioning data transformation is a data transformation that has objective partitioning.

partitioning objective
type: Class
subclass of: data transformation objective
IAO_0000115: A partitioning objective is a data transformation objective where the aim is to generate a collection of disjoint non-empty subsets whose union equals a non-empty input set.

class discovery data transformation
type: Class
equivalent class: Class
  union of: Restriction
    on property: OBI_0000299
    some values from: clustered data set
  union of: Restriction
    on property: OBI_0000417
    some values from: class discovery objective
subclass of: data transformation
IAO_0000115: A class discovery data transformation (sometimes called unsupervised classification) is a data transformation that has objective class discovery.

class discovery objective
type: Class
subclass of: data transformation objective
IAO_0000115: A class discovery objective (sometimes called unsupervised classification) is a data transformation objective where the aim is to organize input data (typically vectors of attributes) into classes, where the number of classes and their specifications are not known a priori. Depending on usage, the class assignment can be definite or probabilistic.

class prediction objective
type: Class
subclass of: data transformation objective
IAO_0000115: A class prediction objective (sometimes called supervised classification) is a data transformation objective where the aim is to create a predictor from training data through a machine learning technique. The training data consist of pairs of objects (typically vectors of attributes) and class labels for these objects. The resulting predictor can be used to attach class labels to any valid novel input object. Depending on usage, the prediction can be definite or probabilistic. A classification is learned from the training data and can then be tested on test data.

cross validation objective
type: Class
subclass of: partitioning objective
IAO_0000115: A cross validation objective is a data transformation objective in which the aim is to partition a sample of data into subsets such that the analysis is initially performed on a single subset, while the other subset(s) are retained for subsequent use in confirming and validating the initial analysis.

clustered data visualization
type: Class
subclass of: data visualization
subclass of: Restriction
  on property: OBI_0000299
  some values from: Class
    union of: dot plot
    union of: histogram
    union of: heatmap
    union of: dendrogram
    union of: scatter plot
subclass of: Restriction
  on property: OBI_0000293
  all values from: clustered data set
IAO_0000115: A data visualization which has input of a clustered data set and produces an output of a report graph which is capable of rendering data of this type.

study design
type: Class
subclass of: plan specification
subclass of: Restriction
  on property: has part
  some values from: protocol
IAO_0000115: A plan specification comprised of protocols (which may specify how and what kinds of data will be gathered) that are executed as part of an investigation and is realized during a study design execution.

quality
type: Class
subclass of: specifically dependent continuant
IAO_0000115: A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities
IAO_0000412: pato.owl
IAO_0000589: quality (PATO)
has alternative id: PATO:0000072
has exact synonym: trait
has OBO namespace: quality
id: PATO:0000001

Axiom
annotated source: quality
annotated property: IAO_0000115
annotated target: A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities
has db xref: PATOC:GVG

composition
type: Class
subclass of: structure
IAO_0000115: A single physical entity inhering in an bearer by virtue of the bearer's quantities or relative ratios of subparts.
has exact synonym: composed of
has exact synonym: compositionality
has exact synonym: content
has exact synonym: structure, composition

concentration of
type: Class
subclass of: molecular quality
IAO_0000115: A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance.
has exact synonym: concentration

Axiom
annotated source: concentration of
annotated property: IAO_0000115
annotated target: A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance.
has db xref: Wikipedia:http://en.wikipedia.org/wiki/concentration

distance
type: Class
subclass of: physical quality
IAO_0000115: A quality that is the extent of space between two entities.

Axiom
annotated source: distance
annotated property: IAO_0000115
annotated target: A quality that is the extent of space between two entities.
has db xref: PATOC:GVG

frequency
type: Class
subclass of: rate of occurence
IAO_0000115: A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time.

Axiom
annotated source: frequency
annotated property: IAO_0000115
annotated target: A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time.
has db xref: Wikipedia:http://en.wikipedia.org/wiki/frequency

hardness
type: Class
subclass of: quality of a solid
IAO_0000115: A physical quality inhering in a bearer by virtue of the bearer's resistance to pressure, being broken, or pierced
has related synonym: impenetrability
has related synonym: toughness

morphology
type: Class
subclass of: physical object quality
IAO_0000115: A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.

Axiom
annotated source: morphology
annotated property: IAO_0000115
annotated target: A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.
has db xref: PATOC:GVG

shape
type: Class
subclass of: morphology
IAO_0000115: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
has exact synonym: relational shape quality

Axiom
annotated source: shape
annotated property: IAO_0000115
annotated target: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
has db xref: PATOC:GVG

qualitative
type: Class
subclass of: quality

deviation (from_normal)
type: Class
subclass of: qualitative
IAO_0000115: A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average.
label: deviation(from_normal)

size
type: Class
subclass of: morphology
IAO_0000115: A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.

Axiom
annotated source: size
annotated property: IAO_0000115
annotated target: A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
has db xref: WordNet:WordNet

mass
type: Class
subclass of: physical quality
IAO_0000115: A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter.

Axiom
annotated source: mass
annotated property: IAO_0000115
annotated target: A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter.
has db xref: PATOC:GVG

weight
type: Class
subclass of: force
IAO_0000115: A physical quality inhering in a bearer that has mass near a gravitational body.

Axiom
annotated source: weight
annotated property: IAO_0000115
annotated target: A physical quality inhering in a bearer that has mass near a gravitational body.
has db xref: Wikipedia:http://en.wikipedia.org/wiki/Weight

position
type: Class
subclass of: physical quality
IAO_0000115: A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity.
has exact synonym: location
has exact synonym: placement
has exact synonym: relational spatial quality

Axiom
annotated source: position
annotated property: IAO_0000115
annotated target: A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity.
has db xref: PATOC:GVG

structure
type: Class
subclass of: morphology
IAO_0000115: A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form.
has broad synonym: conformation
has exact synonym: relational structural quality

Axiom
annotated source: structure
annotated property: IAO_0000115
annotated target: A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form.
has db xref: PATOC:GVG

Axiom
annotated source: structure
annotated property: hasBroadSynonym
annotated target: conformation
has db xref: VT:1000738

temperature
type: Class
subclass of: physical quality
subclass of: quality of a single physical entity
IAO_0000115: A physical quality of the thermal energy of a system.

Axiom
annotated source: temperature
annotated property: IAO_0000115
annotated target: A physical quality of the thermal energy of a system.
has db xref: PATOC:GVG

rate
type: Class
subclass of: physical quality of a process
IAO_0000115: A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time.

Axiom
annotated source: rate
annotated property: IAO_0000115
annotated target: A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time.
has db xref: PATOC:melissa

time
type: Class
subclass of: physical quality
IAO_0000115: A quality in which events occur in sequence.

Axiom
annotated source: time
annotated property: IAO_0000115
annotated target: A quality in which events occur in sequence.
has db xref: PATOC:GVG

behavioral quality
type: Class
subclass of: organismal quality
IAO_0000115: An organismal quality inhering in a bearer by virtue of the bearer's behavior aggregate of the responses or reactions or movements in a given situation.

hard
type: Class
subclass of: hardness
subclass of: increased object quality
IAO_0000115: A hardness quality of being rigid and resistant to pressure.
has related synonym: firm
has related synonym: impenetrable
has related synonym: tough

decreased size
type: Class
subclass of: size
subclass of: decreased object quality
IAO_0000115: A size quality which is relatively low.
has narrow synonym: hypoplasia
has narrow synonym: underdeveloped
has related synonym: reduced
has related synonym: small
has related synonym: tiny

opacity
type: Class
subclass of: optical quality
IAO_0000115: An optical quality which obtains by virtue of the ability of the bearer to absorb visible light.

Axiom
annotated source: opacity
annotated property: IAO_0000115
annotated target: An optical quality which obtains by virtue of the ability of the bearer to absorb visible light.
has db xref: PATOC:GVG

opaque
type: Class
subclass of: opacity
IAO_0000115: A optical quality inhering in a bearer by virtue of the bearer's not being clear; not transmitting or reflecting light or radiant energy.
has exact synonym: non-transparent
has related synonym: clouding
has related synonym: cloudy

permeability
type: Class
subclass of: structure
IAO_0000115: A structural quality inhering in a bearer by virtue of the bearer's disposition to being permeated or pervaded by a gas or liquid (as by osmosis or diffusion).

porosity
type: Class
subclass of: permeability
IAO_0000115: A permeability quality inhering in a bearer by virtue of the bearer's disposition to admit the passage of gas or liquid through pores or interstices.
IAO_0000115: A structure quality inhering in a bearer by virtue of the bearer's disposition to admit the passage of gas or liquid through pores or interstices.

Axiom
annotated source: porosity
annotated property: IAO_0000115
annotated target: A structure quality inhering in a bearer by virtue of the bearer's disposition to admit the passage of gas or liquid through pores or interstices.
has db xref: PATOC:GVG

porous
type: Class
subclass of: porosity
IAO_0000115: A porosity quality inhering in a bearer by virtue of the bearer's being capable of admitting the passage of gas or liquid through pores or interstices.

viscosity
type: Class
subclass of: quality of a liquid
IAO_0000115: A physical quality of a liquid inhering in a bearer by virtue of the bearer's disposition to internal resistance to flow.

viscous
type: Class
subclass of: viscosity
IAO_0000115: A viscosity quality inhering in a bearer by virtue of the bearer's having viscosity.

physical quality
type: Class
subclass of: physical object quality
IAO_0000115: A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.
has exact synonym: relational physical quality

Axiom
annotated source: physical quality
annotated property: IAO_0000115
annotated target: A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.
has db xref: PATOC:GVG

force
type: Class
subclass of: physical quality
IAO_0000115: A physical quality inhering in a bearer by virtue of the bearer's rate of change of momentum.
has exact synonym: force amplitude

Axiom
annotated source: force
annotated property: IAO_0000115
annotated target: A physical quality inhering in a bearer by virtue of the bearer's rate of change of momentum.
has db xref: thesaurus.maths:thesaurus.maths

elongated
type: Class
subclass of: shape
IAO_0000115: A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width.

process quality
type: Class
subclass of: quality
disjoint with: physical object quality
IAO_0000115: A quality which inheres in an process.
has exact synonym: quality of a process
has exact synonym: quality of occurrent
has exact synonym: quality of process
has exact synonym: relational quality of occurrent

Axiom
annotated source: process quality
annotated property: IAO_0000115
annotated target: A quality which inheres in an process.
has db xref: PATOC:GVG

quality of a single physical entity
type: Class
subclass of: quality
IAO_0000115: A physical object quality which inheres in a single-bearer.
deprecated: true

physical object quality
type: Class
subclass of: quality
IAO_0000115: A quality which inheres in a continuant.
IAO_0000412: pato.owl
has exact synonym: monadic quality of a continuant
has exact synonym: multiply inhering quality of a physical entity
has exact synonym: quality of a continuant
has exact synonym: quality of a single physical entity
has exact synonym: quality of an object
has exact synonym: quality of continuant
has narrow synonym: monadic quality of an object
has narrow synonym: monadic quality of continuant

Axiom
annotated source: physical object quality
annotated property: IAO_0000115
annotated target: A quality which inheres in a continuant.
has db xref: PATOC:GVG

electromagnetic (EM) radiation quality
type: Class
subclass of: radiation quality
IAO_0000115: A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation.

Axiom
annotated source: electromagnetic (EM) radiation quality
annotated property: IAO_0000115
annotated target: A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation.
has db xref: Wikipedia:http://en.wikipedia.org/wiki/Electromagnetic_radiation

optical quality
type: Class
subclass of: electromagnetic (EM) radiation quality
IAO_0000115: An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light.

Axiom
annotated source: optical quality
annotated property: IAO_0000115
annotated target: An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light.
has db xref: PATOC:GVG

decreased temperature
type: Class
subclass of: temperature
subclass of: decreased object quality
IAO_0000115: A temperature which is relatively low.
has exact synonym: cold
has exact synonym: low temperature

duration
type: Class
subclass of: physical quality of a process
IAO_0000115: A process quality inhering in a bearer by virtue of the bearer's magnitude of the temporal extent between the starting and ending point.
has exact synonym: period
has related synonym: time

Axiom
annotated source: duration
annotated property: IAO_0000115
annotated target: A process quality inhering in a bearer by virtue of the bearer's magnitude of the temporal extent between the starting and ending point.
has db xref: PATOC:mellybelly

amorphous
type: Class
subclass of: morphology
IAO_0000115: A morphology quality inhering in a bearer by virtue of the bearer's lack of distinct morphology.

increased position
type: Class
subclass of: position
subclass of: increased object quality
IAO_0000115: A position which is relatively high.
has related synonym: high position

decreased position
type: Class
subclass of: position
subclass of: decreased object quality
IAO_0000115: A positional which is relatively low.
has related synonym: low position

sloped
type: Class
subclass of: shape
IAO_0000115: A shape quality inhering in a bearer by virtue of the bearer's having an oblique or slanted direction.

quality of a solid
type: Class
subclass of: quality of a single physical entity
subclass of: quality of a substance
IAO_0000115: A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity characterized by particles arranged such that their shape and volume are relatively stable.
has exact synonym: solidity

quality of a gas
type: Class
subclass of: quality of a single physical entity
subclass of: quality of a substance
IAO_0000115: A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity consisting of particles that have neither a defined volume nor defined shape.
has exact synonym: gaseous

Axiom
annotated source: quality of a gas
annotated property: IAO_0000115
annotated target: A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity consisting of particles that have neither a defined volume nor defined shape.
has db xref: Chemistry:http://chemistry.about.com/od/chemistryglossary/a/gasdefinition.htm
has db xref: PATOC:GVG

quality of a liquid
type: Class
subclass of: quality of a single physical entity
subclass of: quality of a substance
IAO_0000115: A physical quality inhering in an entity exhibiting the physical characteristics of an amorphous (non-crystalline) form of matter between a gas and a solid that has a definite volume, but no definite shape.
has exact synonym: liquidity

increased mass
type: Class
subclass of: mass
subclass of: increased object quality
IAO_0000115: A mass which is higher than normal or average.
has exact synonym: high mass
has exact synonym: large mass

osmolarity
type: Class
subclass of: concentration of
IAO_0000115: A concentration quality inhering in a bearer by virtue of the bearer's amount of osmoles of solute per liter of solution.

increased osmolarity
type: Class
subclass of: osmolarity
subclass of: increased object quality
IAO_0000115: A osmolarity which is relatively high.
has exact synonym: high osmolarity

elevation
type: Class
subclass of: position
IAO_0000115: A positional quality inhering in a bearer by virtue of the bearer's vertical distance of a point above or below a reference surface.

Axiom
annotated source: elevation
annotated property: IAO_0000115
annotated target: A positional quality inhering in a bearer by virtue of the bearer's vertical distance of a point above or below a reference surface.
has db xref: Trailillustrated:Trailillustrated

increased elevation
type: Class
subclass of: increased position
subclass of: elevation
IAO_0000115: An elevation which is relatively high.
has exact synonym: high elevation
has related synonym: elevated

decreased elevation
type: Class
subclass of: decreased position
subclass of: elevation
IAO_0000115: An elevation which is relatively low.
has exact synonym: low elevation

increased viscosity
type: Class
subclass of: viscous
subclass of: increased object quality
IAO_0000115: A viscosity which relatively high.
has exact synonym: high viscosity

1-D extent
type: Class
subclass of: size
IAO_0000115: A size quality inhering in an bearer by virtue of the bearer's extension in one dimension.
has exact synonym: 1-D size

Axiom
annotated source: 1-D extent
annotated property: IAO_0000115
annotated target: A size quality inhering in an bearer by virtue of the bearer's extension in one dimension.
has db xref: PATOC:GVG

3-D extent
type: Class
subclass of: size
IAO_0000115: A size quality inhering in an bearer by virtue of the bearer's extension in three dimensions.
has exact synonym: 3D size

Axiom
annotated source: 3-D extent
annotated property: IAO_0000115
annotated target: A size quality inhering in an bearer by virtue of the bearer's extension in three dimensions.
has db xref: PATOC:GVG

radiation quality
type: Class
subclass of: physical quality
subclass of: Restriction
  on property: inheres in
  some values from: Class
    intersection of: continuant
    intersection of: Restriction
      on property: participates in
      some values from: radiation
IAO_0000115: A quality that inheres in an bearer by virtue of how that bearer interacts with radiation.

Axiom
annotated source: radiation quality
annotated property: IAO_0000115
annotated target: A quality that inheres in an bearer by virtue of how that bearer interacts with radiation.
has db xref: PATOC:GVG

granular
type: Class
subclass of: composition
IAO_0000115: A composition quality inhering in a bearer by virtue of the bearer's containing granules.

wetness
type: Class
subclass of: physical quality
IAO_0000115: A quality inhering in a bearer by virtue of whether the bearer's being covered by a liquid.

Axiom
annotated source: wetness
annotated property: IAO_0000115
annotated target: A quality inhering in a bearer by virtue of whether the bearer's being covered by a liquid.
has db xref: wordreference.com:wordreference.com

wet
type: Class
subclass of: wetness
IAO_0000115: A wetness quality inhering in a bearer by virtue of the bearer's being covered by a liquid.

Axiom
annotated source: wet
annotated property: IAO_0000115
annotated target: A wetness quality inhering in a bearer by virtue of the bearer's being covered by a liquid.
has db xref: PATOC:GVG

frozen
type: Class
subclass of: temperature
IAO_0000115: A quality inhering in a bearer by virtue of the bearer's being kept below its freezing point.

organismal quality
type: Class
subclass of: physical object quality
IAO_0000115: A quality that inheres in an entire organism or part of an organism.

Axiom
annotated source: organismal quality
annotated property: IAO_0000115
annotated target: A quality that inheres in an entire organism or part of an organism.
has db xref: PATOC:CJM

physical quality of a process
type: Class
subclass of: process quality

laminar
type: Class
subclass of: structure
IAO_0000115: A quality inhering in a bearer by virtue of the bearer's processing the form of a thin plate sheet or layer.

sloped downward
type: Class
subclass of: sloped

displaced
type: Class
subclass of: position
IAO_0000115: A positional quality inhering in a bearer by virtue the bearer's being changed in position.

molecular quality
type: Class
subclass of: physical object quality
IAO_0000115: A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc.
has exact synonym: relational molecular quality

Axiom
annotated source: molecular quality
annotated property: IAO_0000115
annotated target: A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc.
has db xref: PATOC:GVG

quality of a substance
type: Class
subclass of: physical quality
IAO_0000115: A quality inhering in a bearer by virtue of its constitution.

Axiom
annotated source: quality of a substance
annotated property: IAO_0000115
annotated target: A quality inhering in a bearer by virtue of its constitution.
has db xref: PATOC:GVG

handedness
type: Class
subclass of: behavioral quality
IAO_0000115: A behavioral quality inhering ina bearer by virtue of the bearer's unequal distribution of fine motor skill between its left and right hands or feet.

left handedness
type: Class
subclass of: handedness
IAO_0000115: Handedness where the organism preferentially uses the left hand or foot for tasks requiring the use of a single hand or foot or a dominant hand or foot.

right handedness
type: Class
subclass of: handedness
IAO_0000115: Handedness where the organism preferentially uses the right hand or foot for tasks requiring the use of a single hand or foot or a dominant hand or foot.

ambidextrous handedness
type: Class
subclass of: handedness
IAO_0000115: Handedness where the organism exhibits no overall dominance in the use of right or left hand or foot in the performance of tasks that require one hand or foot or a dominant hand or foot.

increased quality
type: Class
subclass of: deviation (from_normal)
IAO_0000115: A quality that has a value that is increased compared to normal or average.

decreased quality
type: Class
subclass of: deviation (from_normal)
IAO_0000115: A quality that has a value that is decreased compared to normal or average.

decreased object quality
type: Class
subclass of: physical object quality
subclass of: decreased quality
IAO_0000115: A quality of an object that has a value that is decreased compared to normal or average.

increased object quality
type: Class
subclass of: physical object quality
subclass of: increased quality
IAO_0000115: A quality of an object that has a value that is increased compared to normal or average.

rate of occurence
type: Class
subclass of: rate
IAO_0000115: The number of repeated events per unit time, occurring in a repeating series. (e.g. the number of heart beats occurring over 1 minute)

Axiom
annotated source: rate of occurence
annotated property: IAO_0000115
annotated target: The number of repeated events per unit time, occurring in a repeating series. (e.g. the number of heart beats occurring over 1 minute)
has db xref: https://orcid.org/0000-0002-9943-9018

collection of organisms
type: Class
equivalent class: Class
  intersection of: Restriction
    on property: has member
    all values from: organism or virus or viroid
  intersection of: Restriction
    on property: has member
    min qualified cardinality: 2
    on class: organism or virus or viroid
subclass of: object aggregate
subclass of: organismal entity
subclass of: Restriction
  on property: has member
  some values from: organism or virus or viroid
IAO_0000112: Examples include: population, community, species (meaning the collection of organisms that makes up a species, not the taxonomic rank), and family.
IAO_0000114: pending final vetting
IAO_0000115: A material entity that consists of two or more organisms, viruses, or viroids.
IAO_0000118: group of organism
IAO_0000118: organism collection
comment: May be of the same or different species.

population of organisms
type: Class
subclass of: single-species collection of organisms
subclass of: Restriction
  on property: has habitat
  some values from: habitat
IAO_0000112: This a general term that can include every organism of a species living in an area or any subset of them. Subclasses can be more specific as needed.
IAO_0000114: pending final vetting
IAO_0000115: A collection of organisms, all of the same species, that live in the same place.
IAO_0000119: ISBN:0878932739
comment: It is sometimes difficult to define the physical boundaries of a population. In the case of sexually reproducing organisms, the individuals within a population have the potential to reproduce with one another during the course of their lifetimes. 'Community', as often used to describe a group of humans, is a type of population of organisms. Classes for population already exist in IDO ('organism population', IDO_0000509) and OBI ('population', OBI_0000181). The definitions should be standardized across OBO Foundry ontologies and only one term used.

ecological community
type: Class
subclass of: community
subclass of: multi-species collection of organisms
subclass of: Class
  intersection of: multi-species collection of organisms
  intersection of: Restriction
    on property: has member
    min qualified cardinality: 2
    on class: population of organisms
IAO_0000115: A community of at least two different species, living in a particular area. Must have at least two populations of different species as members.
IAO_0000115: A multi-species collection of organisms of at least two different species, living in a particular area. Must have at least two populations of different species as members.
IAO_0000118: multispecies community
IAO_0000119: ISBN:0865423504
in subset: envoPolar
comment: Ecological community is defined broadly here, but includes both ecological interactions (inherited from parent term community) and spatial co-existence. It may be used to describe every organisms living in an area, but is often used to refer only to organisms of a particular taxon or guild (e.g., the plant community, the insect community, the herbivore community). The word community, as it often used to describe a group of humans living together, is a type of single-species collection of organisms, not an ecological community.

species as a collection of organisms
type: Class
subclass of: single-species collection of organisms
IAO_0000114: metadata complete
IAO_0000115: A collection of organisms that has as parts every organism of given species and no organisms of any other species.
IAO_0000116: At the moment there is no way to specify in an OWL axiom that the collection includes every individual of a species. This should be added, if possible.
comment: This term is neutral with respect to which organisms are included in a species. Membership will depend on the species concept and the taxonomic assertions used to define the species. These criteria must be specified by the user.

single-species collection of organisms
type: Class
equivalent class: Class
  intersection of: Restriction
    on property: has member
    all values from: organism or virus or viroid
  intersection of: Restriction
    on property: has member
    all values from: Restriction
      on property: member of
      qualified cardinality: 1
      on class: species as a collection of organisms
  intersection of: Restriction
    on property: has member
    min qualified cardinality: 2
    on class: organism or virus or viroid
subclass of: collection of organisms
IAO_0000114: metadata complete
IAO_0000115: A material entity that has as parts two or more organisms, viruses, or viroids of the same species and no members of any other species.
IAO_0000118: collection of organisms of the same species

community
type: Class
subclass of: collection of organisms
IAO_0000115: A collection of organisms of the same species whose members are all either genealogically related to each other or have mated with each other.

multi-species collection of organisms
type: Class
subclass of: collection of organisms
IAO_0000114: metadata incomplete
IAO_0000115: A collection of organisms that consists of two or more organisms from at least two species.
IAO_0000116: Need to add axiom to specify that it has at a mimum members of two different species, but not sure how to specify that. Can't say "('has member' only ('member of' min 2 'species as a collection of organisms'))".

organismal entity
type: Class
equivalent class: Class
  union of: organism or virus or viroid
  union of: collection of organisms
subclass of: material entity
IAO_0000114: metadata complete
IAO_0000115: A material entity that is one or more organisms, viruses or viroids.

plant exposure
type: Class
subclass of: plant experimental condition
IAO_0000115: A plant experimental condition (PECO:0007359) or set of conditions describing the application of an abiotic (PECO:0007191) or biotic plant exposure (PECO:0007357) or the combinatorial application thereof.
has narrow synonym: plant treatment (narrow)

Axiom
annotated source: plant exposure
annotated property: IAO_0000115
annotated target: A plant experimental condition (PECO:0007359) or set of conditions describing the application of an abiotic (PECO:0007191) or biotic plant exposure (PECO:0007357) or the combinatorial application thereof.
has db xref: PECO:cooperl

plant experimental condition
type: Class
IAO_0000115: A plant exposure (PECO:0001001) and/or study type (PECO:0007231) applied to a whole plant (PO:0000003), a plant structure (PO:00090119), and/or a plant population as part of an experiment to evaluate the plant response.
has related synonym: plant treatment ontology (related)
has related synonym: treatment ontology (related)

Axiom
annotated source: plant experimental condition
annotated property: IAO_0000115
annotated target: A plant exposure (PECO:0001001) and/or study type (PECO:0007231) applied to a whole plant (PO:0000003), a plant structure (PO:00090119), and/or a plant population as part of an experiment to evaluate the plant response.
has db xref: Gramene:pankaj_jaiswal
has db xref: PECO:cooperl

whole plant
type: Class
subclass of: plant reproductive material
subclass of: food source
subclass of: plant structure
IAO_0000115: A plant structure (PO:0005679) which is a whole organism.
IAO_0000412: po.owl
has broad synonym: genet (broad)
has broad synonym: ramet (broad)
has db xref: PO_GIT:538
has db xref: PO_GIT:69
has exact synonym: planta entera (Spanish, exact)
has exact synonym: 植物体全体 (Japanese, exact)
has narrow synonym: bush (narrow)
has narrow synonym: frutex (narrow)
has narrow synonym: frutices (narrow)
has narrow synonym: gametophyte (narrow)
has narrow synonym: herb (narrow)
has narrow synonym: liana (narrow)
has narrow synonym: prothalli (narrow)
has narrow synonym: prothallium (narrow)
has narrow synonym: prothallus (narrow)
has narrow synonym: seedling (narrow)
has narrow synonym: shrub (narrow)
has narrow synonym: sporophyte (narrow)
has narrow synonym: suffrutex (narrow)
has narrow synonym: suffrutices (narrow)
has narrow synonym: tree (narrow)
has narrow synonym: vine (narrow)
has narrow synonym: woody clump (narrow)
has OBO namespace: plant_anatomy
has related synonym: clonal colony (related)
has related synonym: colony (related)
id: PO:0000003
in subset: TraitNet
in subset: reference
comment: Examples include plant embryo (PO:0009009), megagametophyte (PO:0025279) and microgametophyte (PO:0025280).

Axiom
annotated source: whole plant
annotated property: IAO_0000115
annotated target: A plant structure (PO:0005679) which is a whole organism.
has db xref: POC:curators

Axiom
annotated source: whole plant
annotated property: hasExactSynonym
annotated target: planta entera (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: whole plant
annotated property: hasExactSynonym
annotated target: 植物体全体 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

Axiom
annotated source: whole plant
annotated property: hasNarrowSynonym
annotated target: frutex (narrow)

Axiom
annotated source: whole plant
annotated property: hasNarrowSynonym
annotated target: frutices (narrow)
has synonym type: Plural

Axiom
annotated source: whole plant
annotated property: hasNarrowSynonym
annotated target: prothalli (narrow)
has synonym type: Plural

Axiom
annotated source: whole plant
annotated property: hasNarrowSynonym
annotated target: prothallus (narrow)

Axiom
annotated source: whole plant
annotated property: hasNarrowSynonym
annotated target: suffrutex (narrow)

Axiom
annotated source: whole plant
annotated property: hasNarrowSynonym
annotated target: suffrutices (narrow)
has synonym type: Plural

Axiom
annotated source: whole plant
annotated property: hasNarrowSynonym
annotated target: woody clump (narrow)

plant structure
type: Class
subclass of: crop residue
IAO_0000115: A plant anatomical entity (PO:0025131) that is, or was, part of a plant, or was derived from a part of a plant.
IAO_0000115: An anatomical structure that is or was part of a plant, or was derived from a part of a plant.
IAO_0000412: po.owl
has db xref: PO_GIT:57
has exact synonym: estructura vegetal (Spanish, exact)
has exact synonym: 植物 構造 (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0009011
in subset: TraitNet
comment: 'Part' includes both proper parts and the whole plant. CARO:0000003 'connected anatomical structure' is defined as: Material anatomical entity that is a single connected structure with inherent 3D shape, generated by coordinated expression of the organism's own genome.

Axiom
annotated source: plant structure
annotated property: IAO_0000115
annotated target: A plant anatomical entity (PO:0025131) that is, or was, part of a plant, or was derived from a part of a plant.
has db xref: CARO:0000003
has db xref: POC:curators

Axiom
annotated source: plant structure
annotated property: hasExactSynonym
annotated target: estructura vegetal (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: plant structure
annotated property: hasExactSynonym
annotated target: 植物 構造 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

Axiom
annotated source: plant structure
annotated property: comment
annotated target: 'Part' includes both proper parts and the whole plant. CARO:0000003 'connected anatomical structure' is defined as: Material anatomical entity that is a single connected structure with inherent 3D shape, generated by coordinated expression of the organism's own genome.
has db xref: PO:cooperl

plant anatomical entity
type: Class
subclass of: material entity
subclass of: Restriction
  on property: only in taxon
  some values from: Viridiplantae
IAO_0000115: An anatomical entity that is or was part of a plant.
created by: rwalls
creation date: 2010-11-15T11:41:38Z
has db xref: PO_GIT:224
has exact synonym: entidad anat&#243mica vegetal (Spanish, exact)
has exact synonym: 植物 解剖学（形態）的実体 (Japanese, exact)
has OBO namespace: plant_anatomy
id: PO:0025131
comment: Includes both material entities such as plant structures and immaterial entities such as plant anatomical spaces. CARO:0000000 'anatomical entity' is defined as: A part of a cellular organism that is either an immaterial entity or a material entity with granularity aboove the level of a protein complex. Or, a substance produced by a cellular organism with granularity above the level of a protein complex. Refers to BFO:0000004 'independent continuant'.

Axiom
annotated source: plant anatomical entity
annotated property: subClassOf
annotated target: Restriction
  on property: only in taxon
  some values from: Viridiplantae
source: cjm

Axiom
annotated source: plant anatomical entity
annotated property: IAO_0000115
annotated target: An anatomical entity that is or was part of a plant.
has db xref: BFO:0000004
has db xref: CARO:0000000
has db xref: POC:curators

Axiom
annotated source: plant anatomical entity
annotated property: hasExactSynonym
annotated target: entidad anat&#243mica vegetal (Spanish, exact)
has db xref: POC:Maria_Alejandra_Gandolfo
has synonym type: Spanish

Axiom
annotated source: plant anatomical entity
annotated property: hasExactSynonym
annotated target: 植物 解剖学（形態）的実体 (Japanese, exact)
has db xref: NIG:Yukiko_Yamazaki
has synonym type: Japanese

Axiom
annotated source: plant anatomical entity
annotated property: comment
annotated target: Includes both material entities such as plant structures and immaterial entities such as plant anatomical spaces. CARO:0000000 'anatomical entity' is defined as: A part of a cellular organism that is either an immaterial entity or a material entity with granularity aboove the level of a protein complex. Or, a substance produced by a cellular organism with granularity above the level of a protein complex. Refers to BFO:0000004 'independent continuant'.
has db xref: CAROC:Brownsville2014

system
type: Class
subclass of: material entity
IAO_0000115: A material entity consisting of multiple components that are causally integrated.
IAO_0000116: May be replaced by a BFO class, as discussed in http://www.jbiomedsem.com/content/4/1/43
IAO_0000117: Chris Mungall
IAO_0000119: http://www.jbiomedsem.com/content/4/1/43

root node
type: Class

anatomical entity
type: Class
subclass of: independent continuant
IAO_0000115: Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species.

unit
type: Class
IAO_0000115: A unit of measurement is a standardized quantity of a physical quality.
comment: "A unit of measurement is a standardized quantity of a physical quality." [Wikipedia:Wikipedia]

Axiom
annotated source: unit
annotated property: IAO_0000115
annotated target: A unit of measurement is a standardized quantity of a physical quality.
has db xref: Wikipedia:Wikipedia

length unit
type: Class
subclass of: measurement unit label
subclass of: unit
subclass of: Restriction
  on property: is unit of
  some values from: distance
subclass of: Restriction
  on property: is unit of
  some values from: elevation
subclass of: Restriction
  on property: is unit of
  some values from: 1-D extent
IAO_0000115: A unit which is a standard measure of the distance between two points.
comment: "A unit which is a standard measure of the distance between two points." [Wikipedia:Wikipedia]

Axiom
annotated source: length unit
annotated property: IAO_0000115
annotated target: A unit which is a standard measure of the distance between two points.
has db xref: Wikipedia:Wikipedia

mass unit
type: Class
subclass of: measurement unit label
subclass of: unit
subclass of: Restriction
  on property: is unit of
  some values from: mass
subclass of: Restriction
  on property: is unit of
  some values from: weight
IAO_0000115: A unit which is a standard measure of the amount of matter/energy of a physical object.
comment: "A unit which is a standard measure of the amount of matter/energy of a physical object." [Wikipedia:Wikipedia]

Axiom
annotated source: mass unit
annotated property: IAO_0000115
annotated target: A unit which is a standard measure of the amount of matter/energy of a physical object.
has db xref: Wikipedia:Wikipedia

time unit
type: Class
subclass of: measurement unit label
subclass of: unit
subclass of: Restriction
  on property: is unit of
  some values from: time
subclass of: Restriction
  on property: is unit of
  some values from: duration
IAO_0000115: A unit which is a standard measure of the dimension in which events occur in sequence.
has exact synonym: time derived unit
comment: "A unit which is a standard measure of the dimension in which events occur in sequence." [Wikipedia:Wikipedia]

Axiom
annotated source: time unit
annotated property: IAO_0000115
annotated target: A unit which is a standard measure of the dimension in which events occur in sequence.
has db xref: Wikipedia:Wikipedia

electric current unit
type: Class
subclass of: unit
comment: "A unit which is a standard measure of the flow of electric charge." [Wikipedia:Wikipedia]

temperature unit
type: Class
subclass of: measurement unit label
subclass of: unit
subclass of: Restriction
  on property: is unit of
  some values from: temperature
IAO_0000115: A unit which is a standard measure of the average kinetic energy of the particles in a sample of matter.
has exact synonym: temperature derived unit
comment: "A unit which is a standard measure of the average kinetic energy of the particles in a sample of matter." [Wikipedia:Wikipedia]

Axiom
annotated source: temperature unit
annotated property: IAO_0000115
annotated target: A unit which is a standard measure of the average kinetic energy of the particles in a sample of matter.
has db xref: Wikipedia:Wikipedia

substance unit
type: Class
subclass of: measurement unit label
subclass of: unit
IAO_0000115: A unit which is a standardised quantity of an element or compound with uniform composition.
comment: "A unit which is a standardised quantity of an element or compound with uniform composition." [Wikipedia:Wikipedia]

luminous intensity unit
type: Class
subclass of: light unit
comment: "A unit which is a standard measure of the wavelength-weighted power emitted by a light source in a particular direction." [Wikipedia:Wikipedia]

meter
type: Class
equivalent class: Class
  one of: meter
subclass of: base unit
subclass of: meter based unit
type: NamedIndividual
type: length unit
has exact synonym: metre
has exact synonym: m
IAO_0000115: A length unit which is equal to the length of the path traveled by light in vacuum during a time interval of 1/299 792 458 of a second.
comment: "A length unit which is equal to the length of the path traveled by light in vacuum during a time interval of 1/299 792 458 of a second." [BIPM:BIPM, NIST:NIST]

kilogram
type: Class
equivalent class: Class
  intersection of: gram based unit
  intersection of: Restriction
    on property: has prefix
    some values from: kilo
equivalent class: Class
  one of: kilogram
subclass of: base unit
subclass of: gram based unit
subclass of: Restriction
  on property: has prefix
  some values from: kilo
type: NamedIndividual
type: mass unit
IAO_0000115: A mass unit which is equal to the mass of the International Prototype Kilogram kept by the BIPM at Svres, France.
has exact synonym: kg
comment: "A mass unit which is equal to the mass of the International Prototype Kilogram kept by the BIPM at Svres, France." [BIPM:BIPM, NIST:NIST]

second
type: Class
equivalent class: Class
  one of: second
subclass of: base unit
subclass of: second based unit
type: NamedIndividual
type: time unit
has exact synonym: s
comment: "A time unit which is equal to the duration of 9 192 631 770 periods of the radiation corresponding to the transition between the two hyperfine levels of the ground state of the caesium 133 atom." [BIPM:BIPM, NIST:NIST]
IAO_0000115: A time unit which is equal to the duration of 9 192 631 770 periods of the radiation corresponding to the transition between the two hyperfine levels of the ground state of the caesium 133 atom.

ampere
type: Class
equivalent class: Class
  one of: ampere
subclass of: base unit
subclass of: ampere based unit
type: NamedIndividual
comment: "An electric current unit which is equal to the constant current which, if maintained in two straight parallel conductors of infinite length, of negligible circular cross-section, and placed 1 m apart in vacuum, would produce between these conductors a force equal to 2 x 10^[-7] newton per meter of length." [BIPM:BIPM, NIST:NIST]

kelvin
type: Class
equivalent class: Class
  one of: kelvin
subclass of: base unit
subclass of: kelvin based unit
type: NamedIndividual
comment: "A thermodynamic temperature unit which is equal to the fraction 1/273.16 of the thermodynamic temperature of the triple point of water." [BIPM:BIPM, NIST:NIST]

mole
type: Class
equivalent class: Class
  one of: mole
subclass of: base unit
subclass of: mole based unit
type: NamedIndividual
comment: "A substance unit which is equal to the amount of substance of a molecular system which contains as many elementary entities as there are atoms in 0.012 kilogram of carbon 12." [BIPM:BIPM, NIST:NIST]

candela
type: Class
equivalent class: Class
  one of: candela
subclass of: base unit
subclass of: candela based unit
type: NamedIndividual
comment: "A luminous intensity unit which equal to the luminous intensity, in a given direction, of a source that emits monochromatic radiation of frequency 540 x 1012 hertz and that has a radiant intensity in that direction of 1/683 watt per steradian." [BIPM:BIPM, NIST:NIST]

centimeter
type: Class
equivalent class: Class
  intersection of: meter based unit
  intersection of: Restriction
    on property: has prefix
    some values from: centi
equivalent class: Class
  one of: centimeter
subclass of: meter based unit
subclass of: Restriction
  on property: has prefix
  some values from: centi
type: NamedIndividual
type: length unit
has exact synonym: cm
has exact synonym: centimetre
comment: "A length unit which is equal to one hundredth of a meter or 10^[-2] m." [NIST:NIST]
IAO_0000115: A length unit which is equal to one hundredth of a meter or 10^[-2] m.

millimeter
type: Class
equivalent class: Class
  intersection of: meter based unit
  intersection of: Restriction
    on property: has prefix
    some values from: milli
equivalent class: Class
  one of: millimeter
subclass of: meter based unit
subclass of: Restriction
  on property: has prefix
  some values from: milli
type: NamedIndividual
type: length unit
has exact synonym: micrometre
IAO_0000115: A length unit which is equal to one thousandth of a meter or 10^[-3] m.
has exact synonym: mm
comment: "A length unit which is equal to one thousandth of a meter or 10^[-3] m." [NIST:NIST]

micrometer
type: Class
equivalent class: Class
  intersection of: meter based unit
  intersection of: Restriction
    on property: has prefix
    some values from: micro
equivalent class: Class
  one of: micrometer
subclass of: meter based unit
subclass of: Restriction
  on property: has prefix
  some values from: micro
type: NamedIndividual
type: length unit
comment: "A length unit which is equal to one millionth of a meter or 10^[-6] m." [NIST:NIST]

nanometer
type: Class
equivalent class: Class
  intersection of: meter based unit
  intersection of: Restriction
    on property: has prefix
    some values from: nano
equivalent class: Class
  one of: nanometer
subclass of: meter based unit
subclass of: Restriction
  on property: has prefix
  some values from: nano
type: NamedIndividual
type: length unit
comment: "A length unit which is equal to one thousandth of one millionth of a meter or 10^[-9] m." [NIST:NIST]

angstrom
type: Class
equivalent class: Class
  one of: angstrom
subclass of: angstrom based unit
type: NamedIndividual
type: length unit
comment: "A length unit which is equal to 10 [-10] m." [NIST:NIST]

picometer
type: Class
equivalent class: Class
  intersection of: meter based unit
  intersection of: Restriction
    on property: has prefix
    some values from: pico
equivalent class: Class
  one of: picometer
subclass of: meter based unit
subclass of: Restriction
  on property: has prefix
  some values from: pico
type: NamedIndividual
comment: "A length unit which is equal to 10^[-12] m." [NIST:NIST]

gram
type: Class
equivalent class: Class
  one of: gram
subclass of: gram based unit
type: NamedIndividual
type: mass unit
IAO_0000115: A mass unit which is equal to one thousandth of a kilogram or 10^[-3] kg.
has exact synonym: g
comment: "A mass unit which is equal to one thousandth of a kilogram or 10^[-3] kg." [NIST:NIST]

milligram
type: Class
equivalent class: Class
  intersection of: gram based unit
  intersection of: Restriction
    on property: has prefix
    some values from: milli
equivalent class: Class
  one of: milligram
subclass of: gram based unit
subclass of: Restriction
  on property: has prefix
  some values from: milli
type: NamedIndividual
type: mass unit
IAO_0000115: A mass unit which is equal to one thousandth of a gram or 10^[-3] g.
comment: "A mass unit which is equal to one thousandth of a gram or 10^[-3] g." [UOC:GVG]
has exact synonym: mg

microgram
type: Class
equivalent class: Class
  intersection of: gram based unit
  intersection of: Restriction
    on property: has prefix
    some values from: micro
equivalent class: Class
  one of: microgram
subclass of: gram based unit
subclass of: Restriction
  on property: has prefix
  some values from: micro
type: NamedIndividual
type: mass unit
comment: "A mass unit which is equal to one millionth of a gram or 10^[-6] g." [UOC:GVG]

nanogram
type: Class
equivalent class: Class
  intersection of: gram based unit
  intersection of: Restriction
    on property: has prefix
    some values from: nano
equivalent class: Class
  one of: nanogram
subclass of: gram based unit
subclass of: Restriction
  on property: has prefix
  some values from: nano
type: NamedIndividual
type: mass unit
comment: "A mass unit which is equal to one thousandth of one millionth of a gram or 10^[-9] g." [UOC:GVG]

picogram
type: Class
equivalent class: Class
  intersection of: gram based unit
  intersection of: Restriction
    on property: has prefix
    some values from: pico
equivalent class: Class
  one of: picogram
subclass of: gram based unit
subclass of: Restriction
  on property: has prefix
  some values from: pico
type: NamedIndividual
type: mass unit
comment: "A mass unit which is equal to 10^[-12] g." [UOC:GVG]

femtogram
type: Class
equivalent class: Class
  intersection of: gram based unit
  intersection of: Restriction
    on property: has prefix
    some values from: femto
equivalent class: Class
  one of: femtogram
subclass of: gram based unit
subclass of: Restriction
  on property: has prefix
  some values from: femto
type: NamedIndividual
comment: "A mass unit which is equal to 10^[-15] g." [NIST:NIST]

degree Celsius
type: Class
equivalent class: Class
  one of: degree Celsius
subclass of: degree Celsius based unit
type: NamedIndividual
type: temperature unit
comment: "A temperature unit which is equal to one kelvin degree. However, they have their zeros at different points. The centigrade scale has its zero at 273.15 K." [NIST:NIST]
IAO_0000115: A temperature unit which is equal to one kelvin degree. However, they have their zeros at different points. The centigrade scale has its zero at 273.15 K.
has exact synonym: C

millisecond
type: Class
equivalent class: Class
  intersection of: second based unit
  intersection of: Restriction
    on property: has prefix
    some values from: milli
equivalent class: Class
  one of: millisecond
subclass of: second based unit
subclass of: Restriction
  on property: has prefix
  some values from: milli
type: NamedIndividual
comment: "A time unit which is equal to one thousandth of a second or 10^[-3] s." [NIST:NIST]

microsecond
type: Class
equivalent class: Class
  intersection of: second based unit
  intersection of: Restriction
    on property: has prefix
    some values from: micro
equivalent class: Class
  one of: microsecond
subclass of: second based unit
subclass of: Restriction
  on property: has prefix
  some values from: micro
type: NamedIndividual
comment: "A time unit which is equal to one millionth of a second or 10^[-6] s." [NIST:NIST]

picosecond
type: Class
equivalent class: Class
  intersection of: second based unit
  intersection of: Restriction
    on property: has prefix
    some values from: pico
equivalent class: Class
  one of: picosecond
subclass of: second based unit
subclass of: Restriction
  on property: has prefix
  some values from: pico
type: NamedIndividual
comment: "A time unit which is equal to 10^[-12] s." [NIST:NIST]

minute
type: Class
equivalent class: Class
  one of: minute
subclass of: minute based unit
type: NamedIndividual
type: time unit
has exact synonym: min
IAO_0000115: A time unit which is equal to 60 seconds.
comment: "A time unit which is equal to 60 seconds." [Wikipedia:Wikipedia]

hour
type: Class
equivalent class: Class
  one of: hour
subclass of: hour based unit
type: NamedIndividual
type: time unit
IAO_0000115: A time unit which is equal to 3600 seconds or 60 minutes.
has exact synonym: h
comment: "A time unit which is equal to 3600 seconds or 60 minutes." [Wikipedia:Wikipedia]

day
type: Class
equivalent class: Class
  one of: day
subclass of: day based unit
type: NamedIndividual
type: time unit
IAO_0000115: A time unit which is equal to 24 hours.
comment: "A time unit which is equal to 24 hours." [Wikipedia:Wikipedia]

week
type: Class
equivalent class: Class
  one of: week
subclass of: week based unit
type: NamedIndividual
type: time unit
IAO_0000115: A time unit which is equal to 7 days.
comment: "A time unit which is equal to 7 days." [Wikipedia:Wikipedia]

month
type: Class
equivalent class: Class
  one of: month
subclass of: month based unit
type: NamedIndividual
type: time unit
IAO_0000115: A time unit which is approximately equal to the length of time of one of cycle of the moon's phases which in science is taken to be equal to 30 days.
comment: "A time unit which is approximately equal to the length of time of one of cycle of the moon's phases which in science is taken to be equal to 30 days." [Wikipedia:Wikipedia]

year
type: Class
equivalent class: Class
  one of: year
subclass of: year based unit
type: NamedIndividual
type: time unit
IAO_0000115: A time unit which is equal to 12 months which in science is taken to be equal to 365.25 days.
comment: "A time unit which is equal to 12 months which in science is taken to be equal to 365.25 days." [Wikipedia:Wikipedia]

milliampere
type: Class
equivalent class: Class
  intersection of: ampere based unit
  intersection of: Restriction
    on property: has prefix
    some values from: milli
equivalent class: Class
  one of: milliampere
subclass of: ampere based unit
subclass of: Restriction
  on property: has prefix
  some values from: milli
type: NamedIndividual
comment: "An electric current unit current which is equal to one thousandth of an ampere or 10^[-3] A." [UOC:GVG]

microampere
type: Class
equivalent class: Class
  intersection of: ampere based unit
  intersection of: Restriction
    on property: has prefix
    some values from: micro
equivalent class: Class
  one of: microampere
subclass of: ampere based unit
subclass of: Restriction
  on property: has prefix
  some values from: micro
type: NamedIndividual
comment: "An electric current unit current which is equal to one millionth of an ampere or 10^[-6] A." [UOC:GVG]

micromole
type: Class
equivalent class: Class
  intersection of: mole based unit
  intersection of: Restriction
    on property: has prefix
    some values from: micro
equivalent class: Class
  one of: micromole
subclass of: mole based unit
subclass of: Restriction
  on property: has prefix
  some values from: micro
type: NamedIndividual
type: substance unit
comment: "A substance unit equal to a millionth of a mol or 10^[-6] mol." [NIST:NIST]

millimole
type: Class
equivalent class: Class
  intersection of: mole based unit
  intersection of: Restriction
    on property: has prefix
    some values from: milli
equivalent class: Class
  one of: millimole
subclass of: mole based unit
subclass of: Restriction
  on property: has prefix
  some values from: milli
type: NamedIndividual
comment: "A substance unit equal to a thousandth of a mol or 10^[-3] mol." [NIST:NIST]

nanomole
type: Class
equivalent class: Class
  intersection of: mole based unit
  intersection of: Restriction
    on property: has prefix
    some values from: nano
equivalent class: Class
  one of: nanomole
subclass of: mole based unit
subclass of: Restriction
  on property: has prefix
  some values from: nano
type: NamedIndividual
type: substance unit
comment: "A substance unit equal to one thousandth of one millionth of a mole or 10^[-9] mol." [NIST:NIST]

picomole
type: Class
equivalent class: Class
  intersection of: mole based unit
  intersection of: Restriction
    on property: has prefix
    some values from: pico
equivalent class: Class
  one of: picomole
subclass of: mole based unit
subclass of: Restriction
  on property: has prefix
  some values from: pico
type: NamedIndividual
type: substance unit
comment: "A substance unit equal to 10^[-12] mol." [NIST:NIST]

femtomole
type: Class
equivalent class: Class
  intersection of: mole based unit
  intersection of: Restriction
    on property: has prefix
    some values from: femto
equivalent class: Class
  one of: femtomole
subclass of: mole based unit
subclass of: Restriction
  on property: has prefix
  some values from: femto
type: NamedIndividual
comment: "A substance unit equal to 10^[-15] mol." [NIST:NIST]

attomole
type: Class
equivalent class: Class
  intersection of: mole based unit
  intersection of: Restriction
    on property: has prefix
    some values from: atto
equivalent class: Class
  one of: attomole
subclass of: mole based unit
subclass of: Restriction
  on property: has prefix
  some values from: atto
type: NamedIndividual
comment: "A substance unit equal to 10^[-18] mol." [NIST:NIST]

base unit
type: Class
subclass of: unit
comment: "A unit which is one of a particular measure to which all measures of that type can be related." [NIST:NIST]

prefix
type: Class

area unit
type: Class
subclass of: unit
comment: "A unit which is a standard measure of the amount of a 2-dimensional flat surface." [UOC:GVG]

acceleration unit
type: Class
subclass of: unit
comment: "A unit which is a standard measure of the rate of change of velocity in either speed or direction." [Wikipedia:Wikipedia]

angular velocity unit
type: Class
subclass of: unit
comment: "A unit which is a standard measure of the rate of angular movement about an axis; the angle rotated in a given time." [Wikipedia:Wikipedia]

angular acceleration unit
type: Class
subclass of: unit
comment: "A unit which is a standard measure of the rate of change of angular velocity." [Wikipedia:Wikipedia]

concentration unit
type: Class
subclass of: measurement unit label
subclass of: unit
subclass of: Restriction
  on property: is unit of
  some values from: concentration of
IAO_0000115: A unit which represents a standard measurement of how much of a given substance there is mixed with another substance.
comment: "A unit which represents a standard measurement of how much of a given substance there is mixed with another substance." [UOC:GVG]

Axiom
annotated source: concentration unit
annotated property: IAO_0000115
annotated target: A unit which represents a standard measurement of how much of a given substance there is mixed with another substance.
has db xref: UOC:GVG

mass density unit
type: Class
subclass of: density unit
comment: "A density unit which is a standard measure of the mass of a substance in a given volume." [UOC:GVG]

luminance unit
type: Class
subclass of: light unit
comment: "A unit which is a standard measure of the luminous intensity impinging on a given area." [Wikipedia:Wikipedia]

area density unit
type: Class
subclass of: density unit
comment: "A density unit which is a standard measure of the mass exerting an influence on a given area." [Wikipedia:Wikipedia]

molar mass unit
type: Class
subclass of: mass unit
comment: "A unit which is a standard measure of the mass of a homogeneous substance containing 6.02 x 1023 atoms or molecules." [Wikipedia:Wikipedia]

molar volume unit
type: Class
subclass of: volume unit
comment: "A unit which is a standard measure of the volume of a homogeneous substance containing 6.02 x 1023 atoms or molecules." [Wikipedia:Wikipedia]

momentum unit
type: Class
subclass of: unit
comment: "A unit which is a standard measure of the quantity of motion measured by the product of mass and velocity." [Wikipedia:Wikipedia]

rotational frequency unit
type: Class
subclass of: frequency unit
comment: "A unit which is a standard measure of the number of rotations in a given time." [NIST:NIST]

specific volume unit
type: Class
subclass of: volume unit
comment: "A unit which is a standard measure of the volume of a given mass of substance (the reciprocal of density)." [Wikipedia:Wikipedia]

speed/velocity unit
type: Class
subclass of: unit
comment: "A unit which is a standard measure of the rate of movement. Speed is measured in the same physical units of measurement as velocity, but does not contain the element of direction that velocity has. Speed is thus the magnitude component of velocity." [Wikipedia:Wikipedia]

unit of molarity
type: Class
subclass of: concentration unit
comment: "A concentration unit which is a standard measure of the number of moles of a given substance per liter of solution." [UOC:GVG]

molar
type: Class
equivalent class: Class
  one of: molar
subclass of: molar based unit
type: NamedIndividual
type: concentration unit
comment: "A unit of concentration which expresses a concentration of 1 mole of solute per liter of solution (mol/L)." [UOC:GVG]

millimolar
type: Class
equivalent class: Class
  intersection of: molar based unit
  intersection of: Restriction
    on property: has prefix
    some values from: milli
equivalent class: Class
  one of: millimolar
subclass of: molar based unit
subclass of: Restriction
  on property: has prefix
  some values from: milli
type: NamedIndividual
type: concentration unit
comment: "A unit of molarity which is equal to one thousandth of a molar or 10^[-3] M." [UOC:GVG]

micromolar
type: Class
equivalent class: Class
  intersection of: molar based unit
  intersection of: Restriction
    on property: has prefix
    some values from: micro
equivalent class: Class
  one of: micromolar
subclass of: molar based unit
subclass of: Restriction
  on property: has prefix
  some values from: micro
type: NamedIndividual
type: concentration unit
comment: "A unit of molarity which is equal to one millionth of a molar or 10^[-6] M." [UOC:GVG]

nanomolar
type: Class
equivalent class: Class
  intersection of: molar based unit
  intersection of: Restriction
    on property: has prefix
    some values from: nano
equivalent class: Class
  one of: nanomolar
subclass of: molar based unit
subclass of: Restriction
  on property: has prefix
  some values from: nano
type: NamedIndividual
type: concentration unit
comment: "A unit of molarity which is equal to one thousandth of one millionth of a molar or 10^[-9] M." [UOC:GVG]

picomolar
type: Class
equivalent class: Class
  intersection of: molar based unit
  intersection of: Restriction
    on property: has prefix
    some values from: pico
equivalent class: Class
  one of: picomolar
subclass of: molar based unit
subclass of: Restriction
  on property: has prefix
  some values from: pico
type: NamedIndividual
type: concentration unit
comment: "A unit of molarity which is equal to 10^[-12] M." [UOC:GVG]

unit of molality
type: Class
subclass of: concentration unit
comment: "A concentration unit which is a standard measure of the number of moles of a given substance per kilogram of solvent." [UOC:GVG]

molal
type: Class
equivalent class: Class
  one of: molal
subclass of: molal based unit
type: NamedIndividual
comment: "A unit of concentration which expresses a concentration of a solution of 1 mole per kilogram of solvent (mol/kg)." [UOC:GVG]

millimolal
type: Class
equivalent class: Class
  intersection of: molal based unit
  intersection of: Restriction
    on property: has prefix
    some values from: milli
equivalent class: Class
  one of: millimolal
subclass of: molal based unit
subclass of: Restriction
  on property: has prefix
  some values from: milli
type: NamedIndividual
comment: "A molality unit which is equal to one thousandth of a molal or 10^[-3] m." [UOC:GVG]

micromolal
type: Class
equivalent class: Class
  intersection of: molal based unit
  intersection of: Restriction
    on property: has prefix
    some values from: micro
equivalent class: Class
  one of: micromolal
subclass of: molal based unit
subclass of: Restriction
  on property: has prefix
  some values from: micro
type: NamedIndividual
comment: "A molality unit which is equal to one millionth of a molal or 10^[-6] m." [UOC:GVG]

nanomolal
type: Class
equivalent class: Class
  intersection of: molal based unit
  intersection of: Restriction
    on property: has prefix
    some values from: nano
equivalent class: Class
  one of: nanomolal
subclass of: molal based unit
subclass of: Restriction
  on property: has prefix
  some values from: nano
type: NamedIndividual
comment: "A molality unit which is equal to one thousandth of one millionth of a molal or 10^[-9] m." [UOC:GVG]

picomolal
type: Class
equivalent class: Class
  intersection of: molal based unit
  intersection of: Restriction
    on property: has prefix
    some values from: pico
equivalent class: Class
  one of: picomolal
subclass of: molal based unit
subclass of: Restriction
  on property: has prefix
  some values from: pico
type: NamedIndividual
comment: "A molality unit which is equal to 10^[-12] m." [UOC:GVG]

femtomolar
type: Class
equivalent class: Class
  intersection of: molar based unit
  intersection of: Restriction
    on property: has prefix
    some values from: femto
equivalent class: Class
  one of: femtomolar
subclass of: molar based unit
subclass of: Restriction
  on property: has prefix
  some values from: femto
type: NamedIndividual
comment: "A unit of molarity which is equal to 10^[-15] M." [UOC:GVG]

unit of normality
type: Class
subclass of: concentration unit
comment: "A unit of concentration which highlights the chemical nature of salts." [Wikipedia:Wikipedia]

normal
type: Class
equivalent class: Class
  one of: normal
subclass of: normal based unit
type: NamedIndividual
comment: "A unit of concentration which is one gram equivalent of a solute per liter of solution. A gram equivalent weight or equivalent is a measure of the reactive capacity of a given molecule." [Wikipedia:Wikipedia]

mole fraction
type: Class
equivalent class: Class
  one of: mole fraction
subclass of: mole fraction based unit
type: NamedIndividual
comment: "A concentration unit which denotes the number of moles of solute as a proportion of the total number of moles in a solution." [Wikipedia:Wikipedia]

meter per second per second
type: Class
equivalent class: Class
  one of: meter per second per second
subclass of: meter per second per second based unit
type: NamedIndividual
comment: "An acceleration unit which is equal to the acceleration an object changing its velocity by 1meter/s over a time period that equals one second." [NIST:NIST]

radian per second per second
type: Class
equivalent class: Class
  one of: radian per second per second
subclass of: radian per second per second based unit
type: NamedIndividual
comment: "An angular unit acceleration which is equal to the angular acceleration of an object changing its angular velocity by 1rad/s over a time period that equals one second." [NIST:NIST]

radian per second
type: Class
equivalent class: Class
  one of: radian per second
subclass of: radian per second based unit
type: NamedIndividual
comment: "An angular unit velocity which is equal to about 9.54930 rpm (revolutions per minute)." [NIST:NIST]

square meter
type: Class
equivalent class: Class
  one of: square meter
subclass of: square meter based unit
type: NamedIndividual
comment: "An area unit which is equal to an area enclosed by a square with sides each 1 meter long." [NIST:NIST]

square centimeter
type: Class
equivalent class: Class
  one of: square centimeter
subclass of: square centimeter based unit
type: NamedIndividual
comment: "An area unit which is equal to one ten thousandth of a square meter or 10^[-4] m^[2]." [NIST:NIST]

square millimeter
type: Class
equivalent class: Class
  one of: square millimeter
subclass of: square millimeter based unit
type: NamedIndividual
comment: "An area unit which is equal to one millionth of a square meter or 10^[-6] m^[2]." [NIST:NIST]

kilogram per cubic meter
type: Class
equivalent class: Class
  one of: kilogram per cubic meter
subclass of: mass density unit
type: NamedIndividual
comment: "A mass unit density which is equal to mass of an object in kilograms divided by the volume in cubic meters." [UOC:GVG]

gram per cubic centimeter
type: Class
equivalent class: Class
  one of: gram per cubic centimeter
subclass of: gram per cubic centimeter based unit
type: NamedIndividual
comment: "A mass unit density which is equal to mass of an object in grams divided by the volume in cubic centimeters." [UOC:GVG]

candela per square meter
type: Class
equivalent class: Class
  one of: candela per square meter
subclass of: candela per square meter based unit
type: NamedIndividual
comment: "A luminance unit which is equal to a luminous intensity of one candela radiating from a surface whose area is one square meter." [NIST:NIST]

kilogram per square meter
type: Class
equivalent class: Class
  intersection of: gram per square meter based unit
  intersection of: Restriction
    on property: has prefix
    some values from: kilo
equivalent class: Class
  one of: kilogram per square meter
subclass of: gram per square meter based unit
subclass of: Restriction
  on property: has prefix
  some values from: kilo
type: NamedIndividual
comment: "An area density unit which is equal to the mass of an object in kilograms divided by the surface area in meters squared." [NIST:NIST]

kilogram per mole
type: Class
equivalent class: Class
  intersection of: gram per mole based unit
  intersection of: Restriction
    on property: has prefix
    some values from: kilo
equivalent class: Class
  one of: kilogram per mole
subclass of: gram per mole based unit
subclass of: Restriction
  on property: has prefix
  some values from: kilo
type: NamedIndividual
comment: "A molar mass unit which is equal to one kilogram of mass of one mole of chemical element or chemical compound." [NIST:NIST]

gram per mole
type: Class
equivalent class: Class
  one of: gram per mole
subclass of: gram per mole based unit
type: NamedIndividual
comment: "A molar mass unit which is equal to one gram of mass of one mole of chemical element or chemical compound." [NIST:NIST]

cubic meter per mole
type: Class
equivalent class: Class
  one of: cubic meter per mole
subclass of: cubic meter per mole based unit
type: NamedIndividual
comment: "A molar volume unit which is equal to 1 cubic meter occupied by one mole of a substance in the form of a solid, liquid, or gas." [NIST:NIST]

cubic centimeter per mole
type: Class
equivalent class: Class
  one of: cubic centimeter per mole
subclass of: cubic centimeter per mole based unit
type: NamedIndividual
comment: "A molar volume unit which is equal to 1 cubic centimeter occupied by one mole of a substance in the form of a solid, liquid, or gas." [NIST:NIST]

kilogram meter per second
type: Class
equivalent class: Class
  one of: kilogram meter per second
subclass of: momentum unit
type: NamedIndividual
comment: "A momentum unit which is equal to the momentum of a one kilogram mass object with a speed of one meter per second." [NIST:NIST]

turns per second
type: Class
equivalent class: Class
  one of: turns per second
subclass of: turns per second based unit
type: NamedIndividual
comment: "A rotational frequency unit which is equal to the number complete turn in a period of time that equals to 1 second." [NIST:NIST]

cubic meter per kilogram
type: Class
equivalent class: Class
  one of: cubic meter per kilogram
subclass of: cubic meter per kilogram based unit
type: NamedIndividual
comment: "A specific volume unit which is equal to one cubic meter volume occupied by one kilogram of a particular substance." [NIST:NIST]

meter per second
type: Class
equivalent class: Class
  one of: meter per second
subclass of: meter per second based unit
type: NamedIndividual
comment: "A speed/velocity unit which is equal to the speed of an object traveling 1 meter distance in one second." [NIST:NIST]

volume unit
type: Class
subclass of: measurement unit label
subclass of: unit
subclass of: Restriction
  on property: is unit of
  some values from: 3-D extent
IAO_0000115: A unit which is a standard measure of the amount of space occupied by any substance, whether solid, liquid, or gas.
comment: "A unit which is a standard measure of the amount of space occupied by any substance, whether solid, liquid, or gas." [NIST:NIST]

Axiom
annotated source: volume unit
annotated property: IAO_0000115
annotated target: A unit which is a standard measure of the amount of space occupied by any substance, whether solid, liquid, or gas.
has db xref: NIST:NIST

cubic meter
type: Class
equivalent class: Class
  one of: cubic meter
subclass of: cubic meter based unit
type: NamedIndividual
comment: "A volume unit which is equal to the volume of a cube with edges one meter in length. One cubic meter equals to 1000 liters." [NIST:NIST]

cubic centimeter
type: Class
equivalent class: Class
  one of: cubic centimeter
subclass of: cubic centimeter based unit
type: NamedIndividual
type: volume unit
comment: "A volume unit which is equal to one millionth of a cubic meter or 10^[-9] m^[3], or to 1 ml." [NIST:NIST]

milliliter
type: Class
equivalent class: Class
  intersection of: liter based unit
  intersection of: Restriction
    on property: has prefix
    some values from: milli
equivalent class: Class
  one of: milliliter
subclass of: liter based unit
subclass of: Restriction
  on property: has prefix
  some values from: milli
type: NamedIndividual
type: volume unit
comment: "A volume unit which is equal to one thousandth of a liter or 10^[-3] L, or to 1 cubic centimeter." [NIST:NIST]
IAO_0000115: A volume unit which is equal to one thousandth of a liter or 10^[-3] L, or to 1 cubic centimeter.
has exact synonym: millilitre
has exact synonym: ml

liter
type: Class
equivalent class: Class
  one of: liter
subclass of: liter based unit
type: NamedIndividual
type: volume unit
has exact synonym: litre
IAO_0000115: A volume unit which is equal to one thousandth of a cubic meter or 10^[-3] m^[3], or to 1 decimeter.
comment: "A volume unit which is equal to one thousandth of a cubic meter or 10^[-3] m^[3], or to 1 decimeter." [NIST:NIST]
has exact synonym: L
has exact synonym: l

cubic decimeter
type: Class
equivalent class: Class
  one of: cubic decimeter
subclass of: cubic decimeter based unit
type: NamedIndividual
type: volume unit
comment: "A volume unit which is equal to one thousand of a cubic meter or 10^[-3] m^[3], or to 1 L." [NIST:NIST]

microliter
type: Class
equivalent class: Class
  intersection of: liter based unit
  intersection of: Restriction
    on property: has prefix
    some values from: micro
equivalent class: Class
  one of: microliter
subclass of: liter based unit
subclass of: Restriction
  on property: has prefix
  some values from: micro
type: NamedIndividual
type: volume unit
comment: "A volume unit which is equal to one millionth of a liter or 10^[-6] L." [NIST:NIST]

nanoliter
type: Class
equivalent class: Class
  intersection of: liter based unit
  intersection of: Restriction
    on property: has prefix
    some values from: nano
equivalent class: Class
  one of: nanoliter
subclass of: liter based unit
subclass of: Restriction
  on property: has prefix
  some values from: nano
type: NamedIndividual
type: volume unit
comment: "A volume unit which is equal to one thousandth of one millionth of a liter or 10^[-9] L." [NIST:NIST]

picoliter
type: Class
equivalent class: Class
  intersection of: liter based unit
  intersection of: Restriction
    on property: has prefix
    some values from: pico
equivalent class: Class
  one of: picoliter
subclass of: liter based unit
subclass of: Restriction
  on property: has prefix
  some values from: pico
type: NamedIndividual
type: volume unit
comment: "A volume unit which is equal to 10^[-12] L." [NIST:NIST]

femtoliter
type: Class
equivalent class: Class
  intersection of: liter based unit
  intersection of: Restriction
    on property: has prefix
    some values from: femto
equivalent class: Class
  one of: femtoliter
subclass of: liter based unit
subclass of: Restriction
  on property: has prefix
  some values from: femto
type: NamedIndividual
comment: "A volume unit which is equal to 10^[-15] L." [NIST:NIST]

frequency unit
type: Class
subclass of: measurement unit label
subclass of: unit
subclass of: Restriction
  on property: is unit of
  some values from: frequency
IAO_0000115: A unit which is a standard measure of the number of repetitive actions in a particular time.
comment: "A unit which is a standard measure of the number of repetitive actions in a particular time." [NIST:NIST]

Axiom
annotated source: frequency unit
annotated property: IAO_0000115
annotated target: A unit which is a standard measure of the number of repetitive actions in a particular time.
has db xref: NIST:NIST

hertz
type: Class
equivalent class: Class
  one of: hertz
subclass of: hertz based unit
type: NamedIndividual
type: frequency unit
comment: "A frequency unit which is equal to 1 complete cycle of a recurring phenomenon in 1 second." [NIST:NIST]

force unit
type: Class
subclass of: unit
comment: "A unit which is a standard measure of the force is applied when a mass is accelerated." [NIST:NIST]

newton
type: Class
equivalent class: Class
  one of: newton
subclass of: newton based unit
type: NamedIndividual
comment: "A force unit which is equal to the force required to cause an acceleration of 1m/s2 of a mass of 1 Kg in the direction of the force." [NIST:NIST]

pressure unit
type: Class
subclass of: unit
comment: "A unit which is a standard measure of the force applied to a given area." [NIST:NIST]

pascal
type: Class
equivalent class: Class
  one of: pascal
subclass of: pascal based unit
type: NamedIndividual
comment: "A pressure unit which is equal to the pressure or stress on a surface caused by a force of 1 newton spread over a surface of 1 m^[2]." [NIST:NIST]

energy unit
type: Class
subclass of: unit
comment: "A unit which is a standard measure of the work done by a certain force (gravitational, electric, magnetic, force of inertia, etc)." [NIST:NIST]

joule
type: Class
equivalent class: Class
  one of: joule
subclass of: joule based unit
type: NamedIndividual
comment: "An energy unit which is equal to the energy required when a force of 1 newton moves an object 1 meter in the direction of the force." [NIST:NIST]

power unit
type: Class
subclass of: unit
comment: "A unit which is a standard measure power or the rate of doing work." [NIST:NIST]

watt
type: Class
equivalent class: Class
  one of: watt
subclass of: watt based unit
type: NamedIndividual
comment: "A power unit which is equal to the power used when work is done at the rate of 1 joule per second." [NIST:NIST]

illuminance unit
type: Class
subclass of: light unit
comment: "A unit which is a standard measure of the luminous flux incident on a unit area." [Wikipedia:Wikipedia]

lux
type: Class
equivalent class: Class
  one of: lux
subclass of: lux based unit
type: NamedIndividual
comment: "An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread over an area 1 m^[2]." [NIST:NIST]

luminous flux unit
type: Class
subclass of: light unit
comment: "A unit which is a standard measure of the flow of radiant energy." [Wikipedia:Wikipedia]

lumen
type: Class
equivalent class: Class
  one of: lumen
subclass of: lumen based unit
type: NamedIndividual
comment: "A luminous flux unit which is equal to the luminous flux emitted into 1 steradian by a point source of 1 candela." [NIST:NIST]

catalytic activity unit
type: Class
subclass of: unit
comment: "A unit which is a standard measure of the amount of the action of a catalyst." [NIST:NIST]

katal
type: Class
equivalent class: Class
  one of: katal
subclass of: katal based unit
type: NamedIndividual
comment: "A catalytic unit activity which is equal to the activity of a catalyst in moles per second, such as the amount of an enzyme needed to transform one mole of substrate per second." [NIST:NIST]

angle unit
type: Class
subclass of: unit
comment: "A unit which is a standard measure of the figure or space formed by the junction of two lines or planes." [Wikipedia:Wikipedia]

plane angle unit
type: Class
subclass of: angle unit
comment: "A unit which is a standard measure of the angle formed by two straight lines in the same plane." [Wikipedia:Wikipedia]

radian
type: Class
equivalent class: Class
  one of: radian
subclass of: radian based unit
type: NamedIndividual
comment: "A plane angle unit which is equal to the angle subtended at the center of a circle by an arc equal in length to the radius of the circle, approximately 57 degrees 17 minutes and 44.6 seconds." [NIST:NIST]

solid angle unit
type: Class
subclass of: angle unit
comment: "A unit which is a standard measure of the angle formed by three or more planes intersecting at a common point." [Wikipedia:Wikipedia]

steradian
type: Class
equivalent class: Class
  one of: steradian
subclass of: steradian based unit
type: NamedIndividual
comment: "A solid angle unit which is equal to the solid angle subtended at the center of a sphere by an area on the surface of the sphere that is equal to the radius squared." [NIST:NIST]

radiation unit
type: Class
subclass of: unit
comment: "A unit which is a standard measure of the amount of radiation emitted by a given radiation source as well as the amount of radiation absorbed or deposited in a specific material by a radiation source." [OCRBS:OCRBS]

activity (of a radionuclide) unit
type: Class
subclass of: radiation unit
comment: "A unit which is a standard measure of the transformation (disintegration) rate of a radioactive substance." [DEFRA:DEFRA]

absorbed dose unit
type: Class
subclass of: radiation unit
comment: "A unit which is a standard measure of the energy imparted by ionizing radiation to unit mass of matter such as tissue." [DEFRA:DEFRA]

dose equivalent unit
type: Class
subclass of: radiation unit
comment: "A unit which is a standard measure of the expression of dose in terms of its biological effect." [ORCBS:ORCBS]

exposure unit
type: Class
subclass of: radiation unit
comment: "A unit which is a standard measure of the quantity that expresses the ability of radiation to ionize air and thereby create electric charges which can be collected and measured." [ORCBS:ORCBS]

becquerel
type: Class
equivalent class: Class
  one of: becquerel
subclass of: becquerel based unit
type: NamedIndividual
comment: "An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per second or there is one atom disintegration per second (dps)." [NIST:NIST]

curie
type: Class
equivalent class: Class
  one of: curie
subclass of: curie based unit
type: NamedIndividual
comment: "An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which there are 3.7 x 10^[10] atom disintegration per second (dps)." [ORCBS:ORCBS]

gray
type: Class
equivalent class: Class
  one of: gray
subclass of: gray based unit
type: NamedIndividual
comment: "An absorbed dose unit which is equal to the absorption of one joule of radiation energy by one kilogram of matter." [NIST:NIST]

rad
type: Class
equivalent class: Class
  one of: rad
subclass of: rad based unit
type: NamedIndividual
comment: "An absorbed dose unit which is equal to 0.01 gray (Gy)." [Wikipedia:Wikipedia]

roentgen
type: Class
equivalent class: Class
  one of: roentgen
subclass of: roentgen based unit
type: NamedIndividual
comment: "An exposure unit which is equal to the amount of radiation required to liberate positive and negative charges of one electrostatic unit of charge in 1 cm^[3] of air at standard temperature and pressure (STP). This corresponds to the generation of approximately 2.0810^[9] ion pairs." [Wikipedia:Wikipedia]

sievert
type: Class
equivalent class: Class
  one of: sievert
subclass of: sievert based unit
type: NamedIndividual
comment: "A dose equivalent unit which is equal to the absorption of one joule of radiation energy by one kilogram of matter." [NIST:NIST]

millisievert
type: Class
equivalent class: Class
  intersection of: sievert based unit
  intersection of: Restriction
    on property: has prefix
    some values from: milli
equivalent class: Class
  one of: millisievert
subclass of: sievert based unit
subclass of: Restriction
  on property: has prefix
  some values from: milli
type: NamedIndividual
comment: "A dose equivalent unit which is equal to one thousandth of a sievert or 10^[-3] Sv." [NIST:NIST]

microsievert
type: Class
equivalent class: Class
  intersection of: sievert based unit
  intersection of: Restriction
    on property: has prefix
    some values from: micro
equivalent class: Class
  one of: microsievert
subclass of: sievert based unit
subclass of: Restriction
  on property: has prefix
  some values from: micro
type: NamedIndividual
comment: "A dose equivalent unit which is equal to one millionth of a sievert or 10^[-6] Sv." [NIST:NIST]

Roentgen equivalent man
type: Class
equivalent class: Class
  one of: Roentgen equivalent man
subclass of: Roentgen equivalent man based unit
type: NamedIndividual
comment: "A dose equivalent unit which when multiplied by hundred is equal to one sievert or 1 Sv. 1 Sv is equal to 100 rem." [Wikipedia:Wikipedia]

microgray
type: Class
equivalent class: Class
  intersection of: gray based unit
  intersection of: Restriction
    on property: has prefix
    some values from: micro
equivalent class: Class
  one of: microgray
subclass of: gray based unit
subclass of: Restriction
  on property: has prefix
  some values from: micro
type: NamedIndividual
comment: "An absorbed dose unit which is equal to one millionth of a gray or 10^[-6] Gy." [NIST:NIST]

milligray
type: Class
equivalent class: Class
  intersection of: gray based unit
  intersection of: Restriction
    on property: has prefix
    some values from: milli
equivalent class: Class
  one of: milligray
subclass of: gray based unit
subclass of: Restriction
  on property: has prefix
  some values from: milli
type: NamedIndividual
comment: "An absorbed dose unit which is equal to one thousandth of a gray or 10^[-3] Gy." [NIST:NIST]

nanogray
type: Class
equivalent class: Class
  intersection of: gray based unit
  intersection of: Restriction
    on property: has prefix
    some values from: nano
equivalent class: Class
  one of: nanogray
subclass of: gray based unit
subclass of: Restriction
  on property: has prefix
  some values from: nano
type: NamedIndividual
comment: "An absorbed dose unit which is equal to one thousandth of a millionth of a gray or 10^[-9] Gy." [NIST:NIST]

nanosievert
type: Class
equivalent class: Class
  intersection of: sievert based unit
  intersection of: Restriction
    on property: has prefix
    some values from: nano
equivalent class: Class
  one of: nanosievert
subclass of: sievert based unit
subclass of: Restriction
  on property: has prefix
  some values from: nano
type: NamedIndividual
comment: "A dose equivalent unit which is equal to one thousandth of a millionth of a sievert or 10^[-9] Sv." [NIST:NIST]

millicurie
type: Class
equivalent class: Class
  intersection of: curie based unit
  intersection of: Restriction
    on property: has prefix
    some values from: milli
equivalent class: Class
  one of: millicurie
subclass of: curie based unit
subclass of: Restriction
  on property: has prefix
  some values from: milli
type: NamedIndividual
comment: "An activity (of a radionuclide) unit which is equal to one thousandth of a curie or 10^[-3] Ci." [ORCBS:ORCBS]

microcurie
type: Class
equivalent class: Class
  intersection of: curie based unit
  intersection of: Restriction
    on property: has prefix
    some values from: micro
equivalent class: Class
  one of: microcurie
subclass of: curie based unit
subclass of: Restriction
  on property: has prefix
  some values from: micro
type: NamedIndividual
comment: "An activity (of a radionuclide) unit which is equal to one millionth of a curie or 10^[-6] Ci." [ORCBS:ORCBS]

disintegrations per minute
type: Class
equivalent class: Class
  one of: disintegrations per minute
subclass of: disintegrations per minute based unit
type: NamedIndividual
comment: "An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per minute or there is one atom disintegration per minute." [ORCBS:ORCBS]

counts per minute
type: Class
equivalent class: Class
  one of: counts per minute
subclass of: counts per minute based unit
type: NamedIndividual
comment: "An activity (of a radionuclide) unit which is equal to the number of light emissions produced by ionizing radiation in one minute." [ORCBS:ORCBS]

nanosecond
type: Class
equivalent class: Class
  intersection of: second based unit
  intersection of: Restriction
    on property: has prefix
    some values from: nano
equivalent class: Class
  one of: nanosecond
subclass of: second based unit
subclass of: Restriction
  on property: has prefix
  some values from: nano
type: NamedIndividual
comment: "A time unit which is equal to one thousandth of one millionth of a second or 10^[-9] s." [NIST:NIST]

century
type: Class
equivalent class: Class
  one of: century
subclass of: century based unit
type: NamedIndividual
comment: "A time unit which is equal to 100 years." [Wikipedia:Wikipedia]

half life
type: Class
equivalent class: Class
  one of: half life
subclass of: half life based unit
type: NamedIndividual
comment: "A time unit which represents the period over which the activity or concentration of a specified chemical or element falls to half its original activity or concentration." [MGED:MGED]

foot candle
type: Class
equivalent class: Class
  one of: foot candle
subclass of: foot candle based unit
type: NamedIndividual
comment: "An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread over an area 1 foot^[2]. One footcandle is equal to 10.76 lux." [Wikipedia:Wikipedia]

irradiance unit
type: Class
subclass of: light unit
comment: "A unit which is a standard measure of the power of electromagnetic radiation at a surface, per unit area." [Wikipedia:Wikipedia]

watt per square meter
type: Class
equivalent class: Class
  one of: watt per square meter
subclass of: watt per square meter based unit
type: NamedIndividual
comment: "An irradiance unit which is equal to 1 watt of radiant power incident per one square meter surface area." [NIST:NIST]

einstein per square meter per second
type: Class
equivalent class: Class
  one of: einstein per square meter per second
subclass of: einstein per square meter per second based unit
type: NamedIndividual
comment: "An irradiance unit which is equal to one einstein per square meter per second. One einstein is one mole of photons, regardless of their frequency. Therefore, the number of photons in an einstein is Avogadro's number." [Wikipedia:Wikipedia]

light unit
type: Class
subclass of: unit
comment: "A unit which is a standard measure of the intensity of light." [NIST:NIST]

watt per steradian per square meter
type: Class
equivalent class: Class
  one of: watt per steradian per square meter
subclass of: watt per steradian per square meter based unit
type: NamedIndividual
comment: "A radiance unit which is equal to one watt of radiant power incident per steradian solid angle per one square meter projected area of the source, as viewed from the given direction." [NIST:NIST]

radiant intensity unit
type: Class
subclass of: light unit
comment: "A unit which is a standard measure of the intensity of electromagnetic radiation." [Wikipedia:Wikipedia]

microeinstein per square meter per second
type: Class
equivalent class: Class
  intersection of: einstein per square meter per second based unit
  intersection of: Restriction
    on property: has prefix
    some values from: micro
equivalent class: Class
  one of: microeinstein per square meter per second
subclass of: einstein per square meter per second based unit
subclass of: Restriction
  on property: has prefix
  some values from: micro
type: NamedIndividual
comment: "An irradiance unit which is equal to one microeinstein per square meter per second or 10^[-6] microeinstein/sm^[2]." [Wikipedia:Wikipedia]

radiance unit
type: Class
subclass of: light unit
comment: "A unit which is a standard measure of the power of electromagnetic radiation through space or through a material medium in the form of electromagnetic waves." [Wikipedia:Wikipedia]

watt per steradian
type: Class
equivalent class: Class
  one of: watt per steradian
subclass of: watt per steradian based unit
type: NamedIndividual
comment: "A radiant intensity unit which is equal to one kilogram meter squared per second cubed per steradian." [NIST:NIST]

mass percentage
type: Class
equivalent class: Class
  one of: mass percentage
subclass of: mass percentage based unit
type: NamedIndividual
type: concentration unit
has exact synonym: weight-weight percentage
has exact synonym: w/w
IAO_0000115: A dimensionless concentration unit which denotes the mass of a substance in a mixture as a percentage of the mass of the entire mixture.
comment: "A dimensionless concentration unit which denotes the mass of a substance in a mixture as a percentage of the mass of the entire mixture." [Wikipedia:Wikipedia]

mass volume percentage
type: Class
equivalent class: Class
  one of: mass volume percentage
subclass of: mass volume percentage based unit
type: NamedIndividual
type: concentration unit
comment: "A dimensionless concentration unit which denotes the mass of the substance in a mixture as a percentage of the volume of the entire mixture." [UOC:GVG]

volume percentage
type: Class
equivalent class: Class
  one of: volume percentage
subclass of: volume percentage based unit
type: NamedIndividual
type: concentration unit
comment: "A dimensionless concentration unit which denotes the volume of the solute in mL per 100 mL of the resulting solution." [UOC:GVG]

parts per notation unit
type: Class
subclass of: dimensionless unit
comment: "A dimensionless concentration notation which describes the amount of one substance in another. It is the ratio of the amount of the substance of interest to the amount of that substance plus the amount of the substance." [Wikipedia:Wikipedia]

parts per hundred
type: Class
equivalent class: Class
  one of: parts per hundred
subclass of: parts per hundred based unit
type: NamedIndividual
comment: "A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 100 regardless of the units of measure as long as they are the same." [UOC:GVG]

parts per thousand
type: Class
equivalent class: Class
  one of: parts per thousand
subclass of: parts per thousand based unit
type: NamedIndividual
comment: "A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1000 regardless of the units of measure as long as they are the same." [UOC:GVG]

parts per million
type: Class
equivalent class: Class
  one of: parts per million
subclass of: parts per million based unit
type: NamedIndividual
comment: "A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[6]." [UOC:GVG]

parts per billion
type: Class
equivalent class: Class
  one of: parts per billion
subclass of: parts per billion based unit
type: NamedIndividual
comment: "A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000 regardless of the units of measure as long as they are the same or 1 part in 10^[9]." [UOC:GVG]

parts per trillion
type: Class
equivalent class: Class
  one of: parts per trillion
subclass of: parts per trillion based unit
type: NamedIndividual
comment: "A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[12]." [UOC:GVG]

parts per quadrillion
type: Class
equivalent class: Class
  one of: parts per quadrillion
subclass of: parts per quadrillion based unit
type: NamedIndividual
comment: "A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[15]." [UOC:GVG]

gram per milliliter
type: Class
equivalent class: Class
  one of: gram per milliliter
subclass of: gram per milliliter based unit
type: NamedIndividual
comment: "A mass unit density which is equal to mass of an object in grams divided by the volume in milliliter." [UOC:GVG]

kilogram per liter
type: Class
equivalent class: Class
  intersection of: gram per liter based unit
  intersection of: Restriction
    on property: has prefix
    some values from: kilo
equivalent class: Class
  one of: kilogram per liter
subclass of: gram per liter based unit
subclass of: Restriction
  on property: has prefix
  some values from: kilo
type: NamedIndividual
comment: "A mass unit density which is equal to mass of an object in kilograms divided by the volume in liters." [UOC:GVG]

gram per liter
type: Class
equivalent class: Class
  one of: gram per liter
subclass of: gram per liter based unit
type: NamedIndividual
type: concentration unit
IAO_0000115: A mass unit density which is equal to mass of an object in grams divided by the volume in liters.
has exact synonym: gram per litre
comment: "A mass unit density which is equal to mass of an object in grams divided by the volume in liters." [UOC:GVG]
has exact synonym: g/L

milligram per milliliter
type: Class
equivalent class: Class
  intersection of: gram per liter based unit
  intersection of: Restriction
    on property: has prefix
    some values from: milli
equivalent class: Class
  one of: milligram per milliliter
subclass of: gram per liter based unit
subclass of: Restriction
  on property: has prefix
  some values from: milli
type: NamedIndividual
type: concentration unit
comment: "A mass unit density which is equal to mass of an object in milligrams divided by the volume in milliliters." [UOC:GVG]

unit per volume unit
type: Class
subclass of: concentration unit
comment: "A concentration unit which is a standard measure of the number of units, as an agreed arbitrary amount, of a given substance per a specific volume of solution." [Webmd:Webmd]

unit per milliliter
type: Class
equivalent class: Class
  one of: unit per milliliter
subclass of: unit per milliliter based unit
type: NamedIndividual
comment: "A unit per milliliter unit which is equal to one unit of an agreed arbitrary amount per one milliliter." [Webmd:Webmd]

unit per liter
type: Class
equivalent class: Class
  one of: unit per liter
subclass of: unit per liter based unit
type: NamedIndividual
comment: "A unit per milliliter unit which is equal to one unit of an agreed arbitrary amount per one liter." [UOC:GVG]

mass per unit volume
type: Class
equivalent class: Class
  one of: mass per unit volume
subclass of: mass per unit volume based unit
type: NamedIndividual
comment: "A concentration unit which is a standard measure of the mass of a substance in a given volume (density)." [Wikipedia:Wikipedia]

enzyme unit
type: Class
equivalent class: Class
  one of: enzyme unit
subclass of: enzyme unit based unit
type: NamedIndividual
comment: "A catalytic unit activity which is equal to the amount of the enzyme that catalyzes the conversion of 1 micro mole of substrate per minute." [Wikipedia:Wikipedia]

density unit
type: Class
subclass of: unit
comment: "A unit which is a standard measure of the influence exerted by some mass." [Wikipedia:Wikipedia]

linear density unit
type: Class
subclass of: density unit
comment: "A density unit which is a standard measure of the mass exerting an influence on a one-dimensional object." [Wikipedia:Wikipedia]

kilogram per meter
type: Class
equivalent class: Class
  one of: kilogram per meter
subclass of: linear density unit
type: NamedIndividual
comment: "An area density unit which is equal to the mass of an object in kilograms divided by one meter." [NIST:NIST]

degree
type: Class
equivalent class: Class
  one of: degree
subclass of: degree based unit
type: NamedIndividual
comment: "A plane angle unit which is equal to 1/360 of a full rotation or 1.7453310^[-2] rad." [Wikipedia:Wikipedia]

dimensionless unit
type: Class
subclass of: unit
comment: "A unit which is a standard measure of physical quantity consisting of only a numerical number without any units." [Wikipedia:Wikipedia]

percent
type: Class
subclass of: ratio
comment: "A dimensionless ratio unit which denotes numbers as fractions of 100." [Wikipedia:Wikipedia]

pi
type: Class
equivalent class: Class
  one of: pi
subclass of: pi based unit
type: NamedIndividual
comment: "A dimensionless unit which denoted an irrational real number, approximately equal to 3.14159 which is the ratio of a circle's circumference to its diameter in Euclidean geometry." [Wikipedia:Wikipedia]

count unit
type: Class
subclass of: dimensionless unit
comment: "A dimensionless unit which denotes a simple count of things." [MGED:MGED]

ratio
type: Class
subclass of: dimensionless unit
comment: "A dimensionless unit which denotes an amount or magnitude of one quantity relative to another." [Wikipedia:Wikipedia]

fraction
type: Class
subclass of: ratio
comment: "A dimensionless ratio unit which relates the part (the numerator) to the whole (the denominator)." [Wikipedia:Wikipedia]

molecule count
type: Class
equivalent class: Class
  one of: molecule count
subclass of: molecule count based unit
type: NamedIndividual
comment: "A dimensionless count unit which denotes the number of molecules." [MGED:MGED]

purity percentage
type: Class
equivalent class: Class
  one of: purity percentage
subclass of: purity percentage based unit
type: NamedIndividual
comment: "A dimensionless percent unit which denotes the homogeneity of a biomaterial." [MGED:MGED]

confluence percentage
type: Class
equivalent class: Class
  one of: confluence percentage
subclass of: confluence percentage based unit
type: NamedIndividual
comment: "A dimensionless percent unit which denotes the density of an attached or monolayer culture (e.g., cell culture)." [MGED:MGED]

degree Fahrenheit
type: Class
equivalent class: Class
  one of: degree Fahrenheit
subclass of: degree Fahrenheit based unit
type: NamedIndividual
type: temperature unit
IAO_0000115: A temperature unit which is equal to 5/9ths of a kelvin. Negative 40 degrees Fahrenheit is equal to negative 40 degrees Celsius.
comment: "A temperature unit which is equal to 5/9ths of a kelvin. Negative 40 degrees Fahrenheit is equal to negative 40 degrees Celsius." [Wikipedia:Wikipedia]
has exact synonym: F

pH
type: Class
equivalent class: Class
  one of: pH
subclass of: pH based unit
type: NamedIndividual
type: concentration unit
IAO_0000115: A dimensionless concentration notation which denotes the acidity of a solution in terms of activity of hydrogen ions (H+).
comment: "A dimensionless concentration notation which denotes the acidity of a solution in terms of activity of hydrogen ions (H+)." [Wikipedia:Wikipedia]

liter per kilogram
type: Class
equivalent class: Class
  one of: liter per kilogram
subclass of: liter per kilogram based unit
type: NamedIndividual
comment: "A specific volume unit which is equal to one liter volume occupied by one kilogram of a particular substance." [NIST:NIST]

milliliter per kilogram
type: Class
equivalent class: Class
  intersection of: liter per kilogram based unit
  intersection of: Restriction
    on property: has prefix
    some values from: milli
equivalent class: Class
  one of: milliliter per kilogram
subclass of: liter per kilogram based unit
subclass of: Restriction
  on property: has prefix
  some values from: milli
type: NamedIndividual
comment: "A specific volume unit which is equal to a thousandth of a liter per kilogram or 10^[-3] l/kg." [NIST:NIST]

microliter per kilogram
type: Class
equivalent class: Class
  intersection of: liter per kilogram based unit
  intersection of: Restriction
    on property: has prefix
    some values from: micro
equivalent class: Class
  one of: microliter per kilogram
subclass of: liter per kilogram based unit
subclass of: Restriction
  on property: has prefix
  some values from: micro
type: NamedIndividual
comment: "A specific volume unit which is equal to one millionth of a liter per kilogram or 10^[-6] l/kg." [NIST:NIST]

cell concentration unit
type: Class
subclass of: concentration unit
comment: "A concentration unit which denotes the average cell number in a given volume." [Bioedonline:Bioedonline]

cells per milliliter
type: Class
equivalent class: Class
  one of: cells per milliliter
subclass of: cells per milliliter based unit
type: NamedIndividual
comment: "A unit of cell concentration which is equal to one cell in a volume of 1 milliliter." [Bioedonline:Bioedonline]

catalytic (activity) concentration unit
type: Class
subclass of: concentration unit
comment: "A concentration unit which is a standard measure of the amount of the action of a catalyst in a given volume." [UOC:GVG]

katal per cubic meter
type: Class
equivalent class: Class
  one of: katal per cubic meter
subclass of: katal per cubic meter based unit
type: NamedIndividual
comment: "A catalytic (activity) concentration unit which is equal to 1 katal activity of a catalyst in a given volume of one cubic meter." [NIST:NIST]

katal per liter
type: Class
equivalent class: Class
  one of: katal per liter
subclass of: katal per liter based unit
type: NamedIndividual
comment: "A catalytic (activity) concentration unit which is equal to 1 katal activity of a catalyst in a given volume of one thousandth of a cubic meter." [NIST:NIST]

volume per unit volume
type: Class
subclass of: concentration unit
comment: "A dimensionless concentration unit which denotes the given volume of the solute in the total volume of the resulting solution." [NIST:NIST]

milliliter per cubic meter
type: Class
equivalent class: Class
  one of: milliliter per cubic meter
subclass of: volume per unit volume
type: NamedIndividual
comment: "A volume per unit volume unit which is equal to one millionth of a liter of solute in one cubic meter of solution." [NIST:NIST]

milliliter per liter
type: Class
equivalent class: Class
  one of: milliliter per liter
subclass of: volume per unit volume
type: NamedIndividual
type: concentration unit
comment: "A volume per unit volume unit which is equal to one millionth of a liter of solute in one liter of solution." [NIST:NIST]

gram per deciliter
type: Class
equivalent class: Class
  one of: gram per deciliter
subclass of: gram per deciliter based unit
type: NamedIndividual
type: concentration unit
comment: "A mass density unit which is equal to mass of an object in grams divided by the volume in deciliters." [UOC:GVG]

deciliter
type: Class
equivalent class: Class
  intersection of: liter based unit
  intersection of: Restriction
    on property: has prefix
    some values from: deci
equivalent class: Class
  one of: deciliter
subclass of: liter based unit
subclass of: Restriction
  on property: has prefix
  some values from: deci
type: NamedIndividual
comment: "A volume unit which is equal to one tenth of a liter or 10^[-1] L." [NIST:NIST]

colony forming unit
type: Class
equivalent class: Class
  one of: colony forming unit
subclass of: colony forming unit based unit
type: NamedIndividual
comment: "A dimensionless count unit which a measure of viable bacterial numbers." [Wikipedia:Wikipedia]

plaque forming unit
type: Class
equivalent class: Class
  one of: plaque forming unit
subclass of: plaque forming unit based unit
type: NamedIndividual
comment: "A dimensionless count unit which a measure of plague forming units in a given volume." [Wikipedia:Wikipedia]

colony forming unit per volume
type: Class
subclass of: concentration unit
type: NamedIndividual
type: concentration unit
comment: "A concentration unit which a measure of viable bacterial numbers in a given volume." [Wikipedia:Wikipedia]

colony forming unit per milliliter
type: Class
equivalent class: Class
  one of: colony forming unit per milliliter
subclass of: colony forming unit per milliliter based unit
type: NamedIndividual
comment: "A colony forming unit which a measure of viable bacterial numbers in one milliliter." [Wikipedia:Wikipedia]

plaque forming unit per volume
type: Class
subclass of: concentration unit
comment: "A concentration unit which a measure of plague forming units in a given volume." [UOC:GVG]

plaque forming unit per milliliter
type: Class
equivalent class: Class
  one of: plaque forming unit per milliliter
subclass of: plaque forming unit per milliliter based unit
type: NamedIndividual
comment: "A concentration unit which a measure of plague forming units in one milliliter." [UOC:GVG]

disintegrations per second
type: Class
equivalent class: Class
  one of: disintegrations per second
subclass of: disintegrations per second based unit
type: NamedIndividual
comment: "An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per second or there is one atom disintegration per second." [ORCBS:ORCBS]

electric potential difference unit
type: Class
subclass of: unit
comment: "A unit which is a standard measure of the work done per unit charge as a charge is moved between two points in an electric field." [Wikipedia:Wikipedia]

volt
type: Class
equivalent class: Class
  one of: volt
subclass of: volt based unit
type: NamedIndividual
comment: "An electric potential difference unit which is equal to the work per unit charge. One volt is the potential difference required to move one coulomb of charge between two points in a circuit while using one joule of energy." [Wikipedia:Wikipedia]

electric charge
type: Class
subclass of: unit
comment: "A unit which is a standard measure of the quantity of unbalanced electricity in a body (either positive or negative) and construed as an excess or deficiency of electrons." [WordNet:WordNet]

coulomb
type: Class
equivalent class: Class
  one of: coulomb
subclass of: coulomb based unit
type: NamedIndividual
comment: "An electrical charge unit which is equal to the amount of charge transferred by a current of 1 ampere in 1 second." [WordNet:WordNet]

dalton
type: Class
equivalent class: Class
  one of: dalton
subclass of: dalton based unit
type: NamedIndividual
comment: "An independently to the base SI units defined mass unit which is equal to one twelfth of the mass of an unbound atom of the carbon-12 nuclide, at rest and in its ground state." [Wikipedia:Wikipedia]

kilodalton
type: Class
equivalent class: Class
  intersection of: dalton based unit
  intersection of: Restriction
    on property: has prefix
    some values from: kilo
equivalent class: Class
  one of: kilodalton
subclass of: dalton based unit
subclass of: Restriction
  on property: has prefix
  some values from: kilo
type: NamedIndividual
comment: "A mass unit which is equal to one thousand daltons." [Wikipedia:Wikipedia]

watt-hour
type: Class
equivalent class: Class
  one of: watt-hour
subclass of: watt-hour based unit
type: NamedIndividual
comment: "An energy unit which is equal to the amount of electrical energy equivalent to a one-watt load drawing power for one hour." [Wikipedia:Wikipedia]

kilowatt-hour
type: Class
equivalent class: Class
  intersection of: watt-hour based unit
  intersection of: Restriction
    on property: has prefix
    some values from: kilo
equivalent class: Class
  one of: kilowatt-hour
subclass of: watt-hour based unit
subclass of: Restriction
  on property: has prefix
  some values from: kilo
type: NamedIndividual
comment: "An energy unit which is equal to 1,000 watt-hours." [Wikipedia:Wikipedia]

magnetic flux unit
type: Class
subclass of: unit
comment: "A unit which is a standard measure of quantity of magnetism, taking account of the strength and the extent of a magnetic field." [Wikipedia:Wikipedia]

weber
type: Class
equivalent class: Class
  one of: weber
subclass of: weber based unit
type: NamedIndividual
comment: "A magnetic flux unit which is equal to the amount of flux that when linked with a single turn of wire for an interval of one second will induce an electromotive force of one volt." [ScienceLobby:ScienceLobby]

magnetic flux density unit
type: Class
subclass of: unit
comment: "A unit which is a standard measure of the strength of a magnetic field." [allnet:allnet]

tesla
type: Class
equivalent class: Class
  one of: tesla
subclass of: tesla based unit
type: NamedIndividual
comment: "A magnetic flux density unit which is equal to one weber per square meter." [WordNet:WordNet]

volt-hour
type: Class
equivalent class: Class
  one of: volt-hour
subclass of: volt-hour based unit
type: NamedIndividual
comment: "A magnetic flux unit which is equal to 3600 Wb." [UOC:GVG]

kilovolt-hour
type: Class
equivalent class: Class
  intersection of: volt-hour based unit
  intersection of: Restriction
    on property: has prefix
    some values from: kilo
equivalent class: Class
  one of: kilovolt-hour
subclass of: volt-hour based unit
subclass of: Restriction
  on property: has prefix
  some values from: kilo
type: NamedIndividual
comment: "A magnetic flux unit which is equal to one thousand volt-hours." [UOC:GVG]

information unit
type: Class
subclass of: unit
comment: "A unit which is a standard measure of the amount of information." [Wikipedia:Wikipedia]

bit
type: Class
equivalent class: Class
  one of: bit
subclass of: bit based unit
type: NamedIndividual
comment: "An information unit which refers to a digit in the binary numeral system, which consists of base 2 digits (ie there are only 2 possible values: 0 or 1)." [Wikipedia:Wikipedia]

byte
type: Class
equivalent class: Class
  one of: byte
subclass of: byte based unit
type: NamedIndividual
comment: "An information unit which is equal to 8 bits." [Wikipedia:Wikipedia]

kilobyte
type: Class
equivalent class: Class
  intersection of: byte based unit
  intersection of: Restriction
    on property: has prefix
    some values from: kilo
equivalent class: Class
  one of: kilobyte
subclass of: byte based unit
subclass of: Restriction
  on property: has prefix
  some values from: kilo
type: NamedIndividual
comment: "An information unit which is equal to 1000 bytes." [Wikipedia:Wikipedia]

megabyte
type: Class
equivalent class: Class
  intersection of: byte based unit
  intersection of: Restriction
    on property: has prefix
    some values from: mega
equivalent class: Class
  one of: megabyte
subclass of: byte based unit
subclass of: Restriction
  on property: has prefix
  some values from: mega
type: NamedIndividual
comment: "An information unit which is equal to 1000 kB." [Wikipedia:Wikipedia]

image resolution unit
type: Class
subclass of: information unit
comment: "An information unit which is a standard measure of the detail an image holds." [Wikipedia:Wikipedia]

chroma sampling unit
type: Class
equivalent class: Class
  one of: chroma sampling unit
subclass of: chroma sampling unit based unit
type: NamedIndividual
comment: "An image resolution unit which is a standard measure of the amount of spatial detail in an image." [Wikipedia:Wikipedia]

dynamic range unit
type: Class
equivalent class: Class
  one of: dynamic range unit
subclass of: dynamic range unit based unit
type: NamedIndividual
comment: "An image resolution unit which is a standard measure of the amount of contrast available in a pixel." [Wikipedia:Wikipedia]

spatial resolution unit
type: Class
subclass of: image resolution unit
comment: "An image resolution unit which is a standard measure of the way luminance and chrominance may be sampled at different levels." [Wikipedia:Wikipedia]

dots per inch
type: Class
equivalent class: Class
  one of: dots per inch
subclass of: dots per inch based unit
type: NamedIndividual
comment: "A spatial resolution unit which is a standard measure of the printing resolution, in particular the number of individual dots of ink a printer or toner can produce within a linear one-inch space." [Wikipedia:Wikipedia]

micron pixel
type: Class
equivalent class: Class
  one of: micron pixel
subclass of: spatial resolution unit
type: NamedIndividual
comment: "A spatial resolution unit which is equal to a pixel size of one micrometer." [Wikipedia:Wikipedia]

pixels per inch
type: Class
equivalent class: Class
  one of: pixels per inch
subclass of: pixels per inch based unit
type: NamedIndividual
comment: "A spatial resolution unit which is a standard measure of the resolution of a computer display, related to the size of the display in inches and the total number of pixels in the horizontal and vertical directions." [Wikipedia:Wikipedia]

pixels per millimeter
type: Class
equivalent class: Class
  one of: pixels per millimeter
subclass of: pixels per millimeter based unit
type: NamedIndividual
comment: "A spatial resolution unit which is a standard measure of the number of pixels in one millimeter length or width of a digital image divided by the physical length or width of a printed image." [Wikipedia:Wikipedia]

base pair
type: Class
equivalent class: Class
  one of: base pair
subclass of: base pair based unit
type: NamedIndividual
comment: "A count unit which contains one nucleotide." [UO:GVG]

kibibyte
type: Class
equivalent class: Class
  one of: kibibyte
subclass of: kibibyte based unit
type: NamedIndividual
comment: "An information unit which is equal to 1024 B." [NIST:NIST]

mebibyte
type: Class
equivalent class: Class
  one of: mebibyte
subclass of: mebibyte based unit
type: NamedIndividual
comment: "An information unit which is equal to 1024 KiB." [NIST:NIST]

millivolt
type: Class
equivalent class: Class
  intersection of: volt based unit
  intersection of: Restriction
    on property: has prefix
    some values from: milli
equivalent class: Class
  one of: millivolt
subclass of: volt based unit
subclass of: Restriction
  on property: has prefix
  some values from: milli
type: NamedIndividual
comment: "An electric potential difference unit which is equal to one thousandth of a volt or 10^[-3] V." [UOC:GVG]

kilovolt
type: Class
equivalent class: Class
  intersection of: volt based unit
  intersection of: Restriction
    on property: has prefix
    some values from: kilo
equivalent class: Class
  one of: kilovolt
subclass of: volt based unit
subclass of: Restriction
  on property: has prefix
  some values from: kilo
type: NamedIndividual
comment: "An electric potential difference unit which is equal to one thousand volts or 10^[3] V." [UOC:GVG]

microvolt
type: Class
equivalent class: Class
  intersection of: volt based unit
  intersection of: Restriction
    on property: has prefix
    some values from: micro
equivalent class: Class
  one of: microvolt
subclass of: volt based unit
subclass of: Restriction
  on property: has prefix
  some values from: micro
type: NamedIndividual
comment: "An electric potential difference unit which is equal to one millionth of a volt or 10^[-6] V." [UOC:GVG]

nanovolt
type: Class
equivalent class: Class
  intersection of: volt based unit
  intersection of: Restriction
    on property: has prefix
    some values from: nano
equivalent class: Class
  one of: nanovolt
subclass of: volt based unit
subclass of: Restriction
  on property: has prefix
  some values from: nano
type: NamedIndividual
comment: "An electric potential difference unit which is equal to one billionth of a volt or 10^[-12] V." [UOC:GVG]

picovolt
type: Class
equivalent class: Class
  intersection of: volt based unit
  intersection of: Restriction
    on property: has prefix
    some values from: pico
equivalent class: Class
  one of: picovolt
subclass of: volt based unit
subclass of: Restriction
  on property: has prefix
  some values from: pico
type: NamedIndividual
comment: "An electric potential difference unit which is equal to one trillionth of a volt or 10^[-12] V." [UOC:GVG]

megavolt
type: Class
equivalent class: Class
  intersection of: volt based unit
  intersection of: Restriction
    on property: has prefix
    some values from: mega
equivalent class: Class
  one of: megavolt
subclass of: volt based unit
subclass of: Restriction
  on property: has prefix
  some values from: mega
type: NamedIndividual
comment: "An electric potential difference unit which is equal to one million volts or 10^[6] V." [UOC:GVG]

surface tension unit
type: Class
subclass of: unit
comment: "A unit which is a standard measure of the ability of a liguid to attraction of molecules at its surface as a result of unbalanced molecular cohesive forces." [NIST:NIST]

newton per meter
type: Class
equivalent class: Class
  one of: newton per meter
subclass of: newton per meter based unit
type: NamedIndividual
comment: "A surface tension unit which is equal to one newton per meter." [NIST:NIST]

dyne per cm
type: Class
equivalent class: Class
  one of: dyne per cm
subclass of: dyne per cm based unit
type: NamedIndividual
comment: "A surface tension unit which is equal to one dyne per centimeter." [Wikipedia:Wikipedia]

viscosity unit
type: Class
subclass of: unit
comment: "A unit which is a standard measure of the internal resistance of fluids to flow." [UOC:GVG]

pascal second
type: Class
equivalent class: Class
  one of: pascal second
subclass of: pascal second based unit
type: NamedIndividual
comment: "A viscosity unit which is equal to one pascale per second." [NIST:NIST]

poise
type: Class
equivalent class: Class
  one of: poise
subclass of: poise based unit
type: NamedIndividual
comment: "A viscosity unit which is equal to one dyne second per square centimeter." [Wikipedia:Wikipedia]

decibel
type: Class
equivalent class: Class
  one of: decibel
subclass of: ratio
type: NamedIndividual
comment: "A ratio unit which is an indicator of sound power per unit area." [techtarget:techtarget]

effective dose unit
type: Class
equivalent class: Class
  one of: effective dose unit
subclass of: effective dose unit based unit
type: NamedIndividual
comment: "A unit which is a standard measure of the estimate of the stochastic effect that a non-uniform radiation dose has on a human." [Wikipedia:Wikipedia]

conduction unit
type: Class
subclass of: unit
comment: "A unit which represents a standard measurement of the transmission of an entity through a medium." [UOC:GVG]

electrical conduction unit
type: Class
subclass of: conduction unit
comment: "A unit which represents a standard measurement of the movement of electrically charged particles through a transmission medium (electrical conductor)." [UOC:GVG]

heat conduction unit
type: Class
subclass of: conduction unit
comment: "A unit which represents a standard measurement of the spontaneous transfer of thermal energy through matter, from a region of higher temperature to a region of lower temperature." [Wikipedia:Wikipedia]

siemens
type: Class
equivalent class: Class
  one of: siemens
subclass of: siemens based unit
type: NamedIndividual
comment: "An electrical conduction unit which is equal to A/V." [NIST:NIST]

watt per meter kelvin
type: Class
equivalent class: Class
  one of: watt per meter kelvin
subclass of: watt per meter kelvin based unit
type: NamedIndividual
comment: "An heat conduction unit which is equal to one watt divided by meter kelvin." [NIST:NIST]

electronvolt
type: Class
equivalent class: Class
  one of: electronvolt
subclass of: electronvolt based unit
type: NamedIndividual
comment: "A non-SI unit of energy (eV) defined as the energy acquired by a single unbound electron when it passes through an electrostatic potential difference of one volt. An electronvolt is equal to 1.602 176 53(14) x 10^-19 J." [Wikipedia:Wikipedia]

electric field strength unit
type: Class
subclass of: unit
comment: "The electric field strength is a unit which is a measure of the potential difference between two points some distance apart." [Wikipedia:http\://en.wikipedia.org/wiki/Electric_field]

volt per meter
type: Class
equivalent class: Class
  one of: volt per meter
subclass of: volt per meter based unit
type: NamedIndividual
comment: "The volt per meter is a unit of electric field strength equal to the a potential difference of 1 volt existing between two points that are 1 meter apart." [Wikipedia:http\://en.wikipedia.org/wiki/Electric_field]

absorbance unit
type: Class
equivalent class: Class
  one of: absorbance unit
subclass of: absorbance unit based unit
type: NamedIndividual
comment: "A dimensionless logarithmic unit assigned to a measure of absorbance of light through a partially absorbing substance, defined as -log10(I/I_0) where I = transmitted light and I_0 = incident light." [Wikipedia:http\://en.wikipedia.org/wiki/Absorbance]

volumetric flow rate unit
type: Class
subclass of: measurement unit label
subclass of: unit
IAO_0000115: A unit which is a standard measure of the volume of fluid which passes through a given surface per unit time .
comment: "A unit which is a standard measure of the volume of fluid which passes through a given surface per unit time ." [Wikipedia:Wikipedia]

Axiom
annotated source: volumetric flow rate unit
annotated property: IAO_0000115
annotated target: A unit which is a standard measure of the volume of fluid which passes through a given surface per unit time .
has db xref: Wikipedia:Wikipedia

microliters per minute
type: Class
equivalent class: Class
  one of: microliters per minute
subclass of: volumetric flow rate unit
type: NamedIndividual
type: volumetric flow rate unit
IAO_0000115: A volumetric flow rate unit which is equal to one microliter volume through a given surface in one minute.
comment: "A volumetric flow rate unit which is equal to one microliter volume through a given surface in one minute." [UOC:GVG]
has exact synonym: uL/min
has exact synonym: microlitres per minute

millimetres of mercury
type: Class
equivalent class: Class
  one of: millimetres of mercury
subclass of: pressure unit
type: NamedIndividual
comment: "A unit of pressure equal to the amount of fluid pressure one millimeter deep in mercury at zero degrees centigrade on Earth." [url:en.wiktionary.org/wiki/mmHg]

milligram per liter
type: Class
equivalent class: Class
  intersection of: gram per liter based unit
  intersection of: Restriction
    on property: has prefix
    some values from: milli
equivalent class: Class
  one of: milligram per liter
subclass of: gram per liter based unit
subclass of: Restriction
  on property: has prefix
  some values from: milli
type: NamedIndividual
comment: "A mass unit density which is equal to mass of an object in milligrams divided by the volume in liters." [UOC:GVG]

microgram per milliliter
type: Class
equivalent class: Class
  intersection of: gram per milliliter based unit
  intersection of: Restriction
    on property: has prefix
    some values from: micro
equivalent class: Class
  one of: microgram per milliliter
subclass of: gram per milliliter based unit
subclass of: Restriction
  on property: has prefix
  some values from: micro
type: NamedIndividual
comment: "A mass unit density which is equal to mass of an object in micrograms divided by the volume in millliters." [UOC:GVG]

nanogram per milliliter
type: Class
equivalent class: Class
  intersection of: gram per milliliter based unit
  intersection of: Restriction
    on property: has prefix
    some values from: nano
equivalent class: Class
  one of: nanogram per milliliter
subclass of: gram per milliliter based unit
subclass of: Restriction
  on property: has prefix
  some values from: nano
type: NamedIndividual
comment: "A mass unit density which is equal to mass of an object in nanograms divided by the volume in milliliters." [UOC:GVG]

milliunits per milliliter
type: Class
equivalent class: Class
  one of: milliunits per milliliter
subclass of: unit per volume unit
type: NamedIndividual
comment: "A unit per milliliter unit which is equal to one thousandth of a unit of an agreed arbitrary amount per one milliliter." [UOC:GVG]

rate unit
type: Class
subclass of: measurement unit label
subclass of: unit
IAO_0000115: A unit which represents a standard measurement occurrence of a process per unit time.
comment: "A unit which represents a standard measurement occurrence of a process per unit time." [UOC:GVG]

count per nanomolar second
type: Class
equivalent class: Class
  one of: count per nanomolar second
subclass of: count per nanomolar second based unit
type: NamedIndividual
type: rate unit
comment: "A rate unit which is equal to one over one nanomolar second." [UOC:GVG]

count per molar second
type: Class
equivalent class: Class
  one of: count per molar second
subclass of: count per molar second based unit
type: NamedIndividual
type: rate unit
comment: "A rate unit which is equal to one over one molar second." [UOC:GVG]

kilogram per hectare
type: Class
equivalent class: Class
  one of: kilogram per hectare
subclass of: area density unit
type: NamedIndividual
comment: "An area density unit which is equal to the mass of an object in kilograms divided by the surface area in hectares." [UO:GVG]

count per nanomolar
type: Class
equivalent class: Class
  one of: count per nanomolar
subclass of: count per nanomolar based unit
type: NamedIndividual
type: rate unit
comment: "A rate unit which is equal to one over one nanomolar." [UO:GVG]

count per molar
type: Class
equivalent class: Class
  one of: count per molar
subclass of: count per molar based unit
type: NamedIndividual
type: rate unit
comment: "A rate unit which is equal to one over one molar." [UO:GVG]

mega
type: Class
subclass of: prefix
comment: "A prefix in the metric system denoting a factor of million." [UO:GVG]

kilo
type: Class
subclass of: prefix
comment: "A prefix in the metric system denoting a factor of one thousand." [UO:GVG]

deci
type: Class
subclass of: prefix
comment: "A prefix in the metric system denoting a factor of one tenth." [UO:GVG]

milli
type: Class
subclass of: prefix
comment: "A prefix in the metric system denoting a factor of one thousand." [UO:GVG]

centi
type: Class
subclass of: prefix
comment: "A prefix in the metric system denoting a factor of one hundred." [UO:GVG]

micro
type: Class
subclass of: prefix
comment: "A prefix in the metric system denoting a factor of 10 to the power of -6." [UO:GVG]

nano
type: Class
subclass of: prefix
comment: "A prefix in the metric system denoting a factor of 10 to the power of -9." [UO:GVG]

microgram per liter
type: Class
equivalent class: Class
  intersection of: gram per liter based unit
  intersection of: Restriction
    on property: has prefix
    some values from: micro
equivalent class: Class
  one of: microgram per liter
subclass of: gram per liter based unit
subclass of: Restriction
  on property: has prefix
  some values from: micro
type: NamedIndividual
type: concentration unit
comment: "A mass unit density which is equal to mass of an object in micrograms divided by the volume in liters." [UOC:GVG]

pico
type: Class
subclass of: prefix
comment: "A prefix in the metric system denoting a factor of 10 to the power of -12." [GVG:UO]

femto
type: Class
subclass of: prefix
comment: "A prefix in the metric system denoting a factor of 10 to the power of -15." [UO:GVG]

atto
type: Class
subclass of: prefix
comment: "A prefix in the metric system denoting a factor of 10 to the power of -18." [UO:GVG]

dose unit
type: Class
subclass of: concentration unit
comment: "A concentration unit which is a standard measure of the amount of a toxic or pharmaceutical substance administered to a recipient subject, expressed in terms of the size of the subject." [UO:PC]

milligram per kilogram
type: Class
equivalent class: Class
  one of: milligram per kilogram
subclass of: dose unit
type: NamedIndividual
comment: "A dose unit which is equal to 1 milligram of a toxic or pharmaceutical substance per kilogram body weight of the recipient subject." [UO:PC]

milligram per square meter
type: Class
equivalent class: Class
  intersection of: gram per square meter based unit
  intersection of: Restriction
    on property: has prefix
    some values from: milli
equivalent class: Class
  one of: milligram per square meter
subclass of: dose unit
subclass of: gram per square meter based unit
subclass of: Restriction
  on property: has prefix
  some values from: milli
type: NamedIndividual
comment: "A dose unit which is equal to 1 milligram of a toxic or pharmaceutical substance per square meter of surface area of the recipient subject." [UO:PC]

dosage unit
type: Class
equivalent class: Class
  one of: dosage unit
subclass of: dosage unit based unit
type: NamedIndividual
comment: "A concentration unit which is a standard measure of the amount of a toxic or pharmaceutical substance administered over time to a recipient subject, expressed in terms of the size of the subject." [UO:PC]

milligram per kilogram per day
type: Class
equivalent class: Class
  one of: milligram per kilogram per day
subclass of: dosage unit
type: NamedIndividual
comment: "A dosage unit which is equal to 1 milligram per day of a toxic or pharmaceutical substance per kilogram body weight of the recipient subject." [UO:PC]

relative light unit
type: Class
equivalent class: Class
  one of: relative light unit
subclass of: relative light unit based unit
type: NamedIndividual
comment: "A derived unit which is a measure of relative light intensity, as typically measured by a luminometer, spectrophotometer, or fluorimeter in biological research applications." [UO:PC]

relative luminescence unit
type: Class
equivalent class: Class
  one of: relative luminescence unit
subclass of: relative luminescence unit based unit
type: NamedIndividual
comment: "A relative light unit which is a measure of relative luminescence intensity." [UO:PC]

relative fluorescence unit
type: Class
equivalent class: Class
  one of: relative fluorescence unit
subclass of: relative fluorescence unit based unit
type: NamedIndividual
comment: "A relative light unit which is a measure of relative fluorescence intensity." [UO:PC]

megaHertz
type: Class
equivalent class: Class
  one of: megaHertz
subclass of: frequency unit
type: NamedIndividual
comment: "A frequency unit which is equal to one million hertz or 10^[6] V." [UOC:GVG]

centiMorgan
type: Class
equivalent class: Class
  one of: centiMorgan
subclass of: length unit
type: NamedIndividual
comment: "A unit used to express distances on a genetic map. In genetic mapping, distances between markers are determined by measuring the rate of meoitic recombination between them, which increases proportionately with the distance separating them. A cM is defined as the length of an interval in which there is a 1% probability of recombination. On the average, 1 cM is roughly equivalent to 1 megabase (Mb) of DNA, although this can vary widely due to hot and cold spots of recombination." [NCBI:http\://www.ncbi.nlm.nih.gov/SCIENCE96/Glossary.html]

centiRay
type: Class
equivalent class: Class
  one of: centiRay
subclass of: length unit
type: NamedIndividual
comment: "A unit of genetic map distance defined corresponding to an interval in which there is a 1% probability of X-irradiation induced breakage. To be completely specified, the unit must be qualified by the radiation in dosage in rads (e.g. cR8000), because this determines the actual breakage probability." [NCBI:http\://www.ncbi.nlm.nih.gov/SCIENCE96/Glossary.html]

megabasepair
type: Class
equivalent class: Class
  one of: megabasepair
subclass of: base pair
type: NamedIndividual
comment: "A unit equal to one million base pairs" [UOC:GVG]

gigabasepair
type: Class
equivalent class: Class
  one of: gigabasepair
subclass of: base pair
type: NamedIndividual
comment: "A unit equal to one billion base pairs." [UOC:GVG]

square micrometer
type: Class
equivalent class: Class
  one of: square micrometer
subclass of: square micrometer based unit
type: NamedIndividual
comment: "An area unit which is equal to an area enclosed by a square with sides each 1 micrometer long." [NIST:NIST]

millisiemens
type: Class
equivalent class: Class
  intersection of: siemens based unit
  intersection of: Restriction
    on property: has prefix
    some values from: milli
equivalent class: Class
  one of: millisiemens
subclass of: siemens based unit
subclass of: Restriction
  on property: has prefix
  some values from: milli
type: NamedIndividual
comment: "An electrical conduction unit which is equal to one thousandth of a siemen or 10^[-3] siemens." [NIST:NIST]

micromole per litre
type: Class
equivalent class: Class
  one of: micromole per litre
subclass of: unit of molality
type: NamedIndividual
comment: "A specific concentration unit which is equal to 1 micromole in a given volume of one thousandth of a cubic meter." [NIST:NIST]

micromole per kilogram
type: Class
equivalent class: Class
  one of: micromole per kilogram
subclass of: unit of molality
type: NamedIndividual
comment: "A specific concentration unit which is equal to 1 micromole of a given substance per kilogram of solvent." [UOB:LKSR]

millimeters per day
type: Class
equivalent class: Class
  one of: millimeters per day
subclass of: speed/velocity unit
type: NamedIndividual
comment: "A speed/velocity unit which is equal to the speed of an object traveling 1 millimeter distance in one day." [UOB:LKSR]

kilometer per hour
type: Class
equivalent class: Class
  one of: kilometer per hour
subclass of: speed/velocity unit
type: NamedIndividual
comment: "A speed/velocity unit which is equal to the speed of an object traveling 1 kilometer distance in one hour." [NIST:NIST]

milli
type: Class
equivalent class: Class
  one of: milli
subclass of: mass unit
type: NamedIndividual
comment: "A mass unit which is equal to 1/12 the mass of 12C" [Wikipedia:Wikipedia]

hectare
type: Class
equivalent class: Class
  one of: hectare
subclass of: hectare based unit
type: NamedIndividual
comment: "An area unit which is equal to an area of 10,000 square meters. Equivalent to 2.471 acres." [Wikipedia:Wikipedia]

inch
type: Class
equivalent class: Class
  one of: inch
subclass of: base unit
subclass of: inch based unit
type: NamedIndividual
comment: "A length unit which is equal to 0.0254 metres." [Wikipedia:Wikpiedia]

thou
type: Class
equivalent class: Class
  one of: thou
subclass of: base unit
subclass of: thou based unit
type: NamedIndividual
comment: "A length unit which is equal to 0.0254 millimetres." [Wikipedia:Wikpiedia]

foot
type: Class
equivalent class: Class
  one of: foot
subclass of: base unit
subclass of: foot based unit
type: NamedIndividual
comment: "A length unit which is equal to 0.3048 metres, or 12 inches." [Wikipedia:Wikpiedia]

yard
type: Class
equivalent class: Class
  one of: yard
subclass of: base unit
subclass of: yard based unit
type: NamedIndividual
comment: "A length unit which is equal to 0.9144 metres, or 3 feet." [Wikipedia:Wikpiedia]

chain
type: Class
equivalent class: Class
  one of: chain
subclass of: base unit
subclass of: chain based unit
type: NamedIndividual
comment: "A length unit which is equal to 20.1168 metres, 66 feet, or 22 yards." [Wikipedia:Wikpiedia]

furlong
type: Class
equivalent class: Class
  one of: furlong
subclass of: base unit
subclass of: furlong based unit
type: NamedIndividual
comment: "A length unit which is equal to 20,116.8 metres, 660 feet, or 10 chains." [Wikipedia:Wikpiedia]

mile
type: Class
equivalent class: Class
  one of: mile
subclass of: base unit
subclass of: mile based unit
type: NamedIndividual
comment: "A length unit which is equal to 1,609.344 metres, or 8 furlongs." [Wikipedia:Wikpiedia]

league
type: Class
equivalent class: Class
  one of: league
subclass of: base unit
subclass of: league based unit
type: NamedIndividual
comment: "A length unit which is equal to 3 miles, or 4,828.032 metres" [Wikipedia:Wikpiedia]

maritime length unit
type: Class
equivalent class: Class
  one of: maritime length unit
subclass of: maritime length unit based unit
type: NamedIndividual
comment: "A maritime length unit is one used primarily at sea." [Wikipedia:Wikpiedia]

fathom
type: Class
equivalent class: Class
  one of: fathom
subclass of: fathom based unit
type: NamedIndividual
comment: "A maritime length unit which is equal to 6.08 feet, or 1.853184 metres" [Wikipedia:Wikpiedia]

cable
type: Class
equivalent class: Class
  one of: cable
subclass of: cable based unit
type: NamedIndividual
comment: "A maritime length unit which is equal to 608 feet, 100 fathoms, or 185.3184 metres" [Wikipedia:Wikpiedia]

nautical mile
type: Class
equivalent class: Class
  one of: nautical mile
subclass of: nautical mile based unit
type: NamedIndividual
comment: "A maritime length unit which is equal to 6,080 feet, 10 cables, or 1,853.184 metres" [Wikipedia:Wikpiedia]

perch
type: Class
equivalent class: Class
  one of: perch
subclass of: perch based unit
type: NamedIndividual
comment: "An area unit which is equal to an area of 25.292,852,64 square meters, or 1 square rod." [Wikipedia:Wikipedia]

rood
type: Class
equivalent class: Class
  one of: rood
subclass of: rood based unit
type: NamedIndividual
comment: "An area unit which is equivalent to 1 furlong x 1 rod. This is equal to an area of 1,011.714,1056 square meters, or 40 square rods." [Wikipedia:Wikipedia]

acre
type: Class
equivalent class: Class
  one of: acre
subclass of: acre based unit
type: NamedIndividual
comment: "An area unit which is equivalent to 1 furlong x 1 chain. This is equal to an area of 4,046.856,4224 square meters, or 43,500 square feet." [Wikipedia:Wikipedia]

fluid ounce
type: Class
equivalent class: Class
  one of: fluid ounce
subclass of: fluid ounce based unit
type: NamedIndividual
comment: "An imperial volume unit which is equivalent to 28.413,0625 millilitres." [Wikipedia:Wikipedia]

gill
type: Class
equivalent class: Class
  one of: gill
subclass of: gill based unit
type: NamedIndividual
comment: "An imperial volume unit which is equivalent to 142.065,3125 millilitres." [Wikipedia:Wikipedia]

pint
type: Class
equivalent class: Class
  one of: pint
subclass of: pint based unit
type: NamedIndividual
comment: "An imperial volume unit which is equivalent to 568.261,25 millilitres." [Wikipedia:Wikipedia]

quart
type: Class
equivalent class: Class
  one of: quart
subclass of: quart based unit
type: NamedIndividual
comment: "An imperial volume unit which is equivalent to 1,136.5225 millilitres, or two pints." [Wikipedia:Wikipedia]

gallon
type: Class
equivalent class: Class
  one of: gallon
subclass of: gallon based unit
type: NamedIndividual
comment: "An imperial volume unit which is equivalent to 4,546.09 millilitres, or 8 pints." [Wikipedia:Wikipedia]

grain
type: Class
equivalent class: Class
  one of: grain
subclass of: grain based unit
type: NamedIndividual
comment: "An imperial mass unit which is equivalent to 64.798,91 milligrams." [Wikipedia:Wikipedia]

drachm
type: Class
equivalent class: Class
  one of: drachm
subclass of: drachm based unit
type: NamedIndividual
comment: "An imperial mass unit which is equivalent to 1.771,845,195,3125 grams, or 1/256 of 1 pound." [Wikipedia:Wikipedia]

ounce
type: Class
equivalent class: Class
  one of: ounce
subclass of: ounce based unit
type: NamedIndividual
comment: "An imperial mass unit which is equivalent to 28.349,523,125 grams, or 1/16 of 1 pound." [Wikipedia:Wikipedia]

pound
type: Class
equivalent class: Class
  one of: pound
subclass of: pound based unit
type: NamedIndividual
comment: "An imperial mass unit which is equivalent to 453.592,37 grams." [Wikipedia:Wikipedia]

stone
type: Class
equivalent class: Class
  one of: stone
subclass of: stone based unit
type: NamedIndividual
comment: "An imperial mass unit which is equivalent to 6,350.293,18 grams, or 14 pounds." [Wikipedia:Wikipedia]

quarter
type: Class
equivalent class: Class
  one of: quarter
subclass of: quarter based unit
type: NamedIndividual
comment: "An imperial mass unit which is equivalent to 12.700,586,36 kilograms, or 28 pounds." [Wikipedia:Wikipedia]

hundredweight
type: Class
equivalent class: Class
  one of: hundredweight
subclass of: hundredweight based unit
type: NamedIndividual
comment: "An imperial mass unit which is equivalent to 50.802,345,44 kilograms, 112 pounds, or 8 stone." [Wikipedia:Wikipedia]

ton
type: Class
equivalent class: Class
  one of: ton
subclass of: ton based unit
type: NamedIndividual
comment: "An imperial mass unit which is equivalent to 1,016.046,9088 kilograms, or 2,240 pounds." [Wikipedia:Wikipedia]

slug
type: Class
equivalent class: Class
  one of: slug
subclass of: slug based unit
type: NamedIndividual
comment: "An imperial gravitational unit which is equivalent to a mass that accelerates by 1ft/s² when a force of one pound (lbf) is exerted on it." [Wikipedia:Wikipedia]

teaspoon
type: Class
equivalent class: Class
  one of: teaspoon
subclass of: teaspoon based unit
type: NamedIndividual
comment: "A metric teaspoon is a unit of measurement of volume widely used in cooking recipes and pharmaceutic prescriptions. It equals a 5mL volume." [Wikipedia:https://en.wikipedia.org/wiki/Teaspoon]

micromole
type: Class
equivalent class: Class
  intersection of: mole based unit
  intersection of: Restriction
    on property: has prefix
    some values from: micro
equivalent class: Class
  one of: micromole
subclass of: mole based unit
subclass of: Restriction
  on property: has prefix
  some values from: micro
type: NamedIndividual
comment: "A substance unit which is equal to one millionth of a mole." [UOB:LTS]

gram per square meter
type: Class
equivalent class: Class
  one of: gram per square meter
subclass of: gram per square meter based unit
type: NamedIndividual
comment: "An area density unit which is equal to the mass of an object in grams divided by the surface area in meters squared." [NIST:NIST]

meter based unit
type: Class
subclass of: length unit

second based unit
type: Class
subclass of: time unit

ampere based unit
type: Class
subclass of: electric current unit

kelvin based unit
type: Class
subclass of: temperature unit

mole based unit
type: Class
subclass of: substance unit

candela based unit
type: Class
subclass of: luminous intensity unit

angstrom based unit
type: Class
subclass of: length unit

gram based unit
type: Class
subclass of: mass unit

degree Celsius based unit
type: Class
subclass of: temperature unit

minute based unit
type: Class
subclass of: time unit

hour based unit
type: Class
subclass of: time unit

day based unit
type: Class
subclass of: time unit

week based unit
type: Class
subclass of: time unit

month based unit
type: Class
subclass of: time unit

year based unit
type: Class
subclass of: time unit

molar based unit
type: Class
subclass of: unit of molarity

molal based unit
type: Class
subclass of: unit of molality

normal based unit
type: Class
subclass of: unit of normality

mole fraction based unit
type: Class
subclass of: concentration unit
subclass of: fraction

meter per second per second based unit
type: Class
subclass of: acceleration unit

radian per second per second based unit
type: Class
subclass of: angular acceleration unit

radian per second based unit
type: Class
subclass of: angular velocity unit

square meter based unit
type: Class
subclass of: area unit

square centimeter based unit
type: Class
subclass of: area unit

square millimeter based unit
type: Class
subclass of: area unit

gram per cubic centimeter based unit
type: Class
subclass of: mass density unit

candela per square meter based unit
type: Class
subclass of: luminance unit

gram per mole based unit
type: Class
subclass of: molar mass unit

cubic meter per mole based unit
type: Class
subclass of: molar volume unit

cubic centimeter per mole based unit
type: Class
subclass of: molar volume unit

turns per second based unit
type: Class
subclass of: rotational frequency unit

cubic meter per kilogram based unit
type: Class
subclass of: specific volume unit

meter per second based unit
type: Class
subclass of: speed/velocity unit

cubic meter based unit
type: Class
subclass of: volume unit

cubic centimeter based unit
type: Class
subclass of: volume unit

liter based unit
type: Class
subclass of: volume unit

cubic decimeter based unit
type: Class
subclass of: volume unit

hertz based unit
type: Class
subclass of: frequency unit

newton based unit
type: Class
subclass of: force unit

pascal based unit
type: Class
subclass of: pressure unit

joule based unit
type: Class
subclass of: energy unit

watt based unit
type: Class
subclass of: power unit

lux based unit
type: Class
subclass of: illuminance unit

lumen based unit
type: Class
subclass of: luminous flux unit

katal based unit
type: Class
subclass of: catalytic activity unit

radian based unit
type: Class
subclass of: plane angle unit

steradian based unit
type: Class
subclass of: solid angle unit

becquerel based unit
type: Class
subclass of: activity (of a radionuclide) unit

curie based unit
type: Class
subclass of: activity (of a radionuclide) unit

gray based unit
type: Class
subclass of: absorbed dose unit

rad based unit
type: Class
subclass of: absorbed dose unit

roentgen based unit
type: Class
subclass of: exposure unit

sievert based unit
type: Class
subclass of: dose equivalent unit

Roentgen equivalent man based unit
type: Class
subclass of: dose equivalent unit

disintegrations per minute based unit
type: Class
subclass of: activity (of a radionuclide) unit

counts per minute based unit
type: Class
subclass of: activity (of a radionuclide) unit

century based unit
type: Class
subclass of: time unit

half life based unit
type: Class
subclass of: time unit

foot candle based unit
type: Class
subclass of: illuminance unit

watt per square meter based unit
type: Class
subclass of: irradiance unit

einstein per square meter per second based unit
type: Class
subclass of: irradiance unit

watt per steradian per square meter based unit
type: Class
subclass of: radiance unit

watt per steradian based unit
type: Class
subclass of: radiant intensity unit

mass percentage based unit
type: Class
subclass of: concentration unit
subclass of: percent

mass volume percentage based unit
type: Class
subclass of: concentration unit
subclass of: percent

volume percentage based unit
type: Class
subclass of: percent
subclass of: volume per unit volume

parts per hundred based unit
type: Class
subclass of: parts per notation unit

parts per thousand based unit
type: Class
subclass of: parts per notation unit

parts per million based unit
type: Class
subclass of: parts per notation unit

parts per billion based unit
type: Class
subclass of: parts per notation unit

parts per trillion based unit
type: Class
subclass of: parts per notation unit

parts per quadrillion based unit
type: Class
subclass of: parts per notation unit

gram per milliliter based unit
type: Class
subclass of: mass density unit

gram per liter based unit
type: Class
subclass of: mass density unit

unit per milliliter based unit
type: Class
subclass of: unit per volume unit

unit per liter based unit
type: Class
subclass of: unit per volume unit

mass per unit volume based unit
type: Class
subclass of: concentration unit

enzyme unit based unit
type: Class
subclass of: catalytic activity unit

degree based unit
type: Class
subclass of: plane angle unit

pi based unit
type: Class
subclass of: dimensionless unit

molecule count based unit
type: Class
subclass of: count unit

purity percentage based unit
type: Class
subclass of: percent

confluence percentage based unit
type: Class
subclass of: percent

degree Fahrenheit based unit
type: Class
subclass of: temperature unit

pH based unit
type: Class
subclass of: concentration unit
subclass of: dimensionless unit

liter per kilogram based unit
type: Class
subclass of: specific volume unit

cells per milliliter based unit
type: Class
subclass of: cell concentration unit

katal per cubic meter based unit
type: Class
subclass of: catalytic (activity) concentration unit

katal per liter based unit
type: Class
subclass of: catalytic (activity) concentration unit

gram per deciliter based unit
type: Class
subclass of: mass density unit

colony forming unit based unit
type: Class
subclass of: count unit

plaque forming unit based unit
type: Class
subclass of: count unit

colony forming unit per milliliter based unit
type: Class
subclass of: colony forming unit per volume

plaque forming unit per milliliter based unit
type: Class
subclass of: plaque forming unit per volume

disintegrations per second based unit
type: Class
subclass of: activity (of a radionuclide) unit

volt based unit
type: Class
subclass of: electric potential difference unit

coulomb based unit
type: Class
subclass of: electric charge

dalton based unit
type: Class
subclass of: mass unit

watt-hour based unit
type: Class
subclass of: energy unit

weber based unit
type: Class
subclass of: magnetic flux unit

tesla based unit
type: Class
subclass of: magnetic flux density unit

volt-hour based unit
type: Class
subclass of: magnetic flux unit

bit based unit
type: Class
subclass of: information unit

byte based unit
type: Class
subclass of: information unit

chroma sampling unit based unit
type: Class
subclass of: image resolution unit

dynamic range unit based unit
type: Class
subclass of: image resolution unit

dots per inch based unit
type: Class
subclass of: spatial resolution unit

pixels per inch based unit
type: Class
subclass of: spatial resolution unit

pixels per millimeter based unit
type: Class
subclass of: spatial resolution unit

base pair based unit
type: Class
subclass of: count unit

kibibyte based unit
type: Class
subclass of: information unit

mebibyte based unit
type: Class
subclass of: information unit

newton per meter based unit
type: Class
subclass of: surface tension unit

dyne per cm based unit
type: Class
subclass of: surface tension unit

pascal second based unit
type: Class
subclass of: viscosity unit

poise based unit
type: Class
subclass of: viscosity unit

effective dose unit based unit
type: Class
subclass of: radiation unit

siemens based unit
type: Class
subclass of: electrical conduction unit

watt per meter kelvin based unit
type: Class
subclass of: heat conduction unit

electronvolt based unit
type: Class
subclass of: energy unit

volt per meter based unit
type: Class
subclass of: electric field strength unit

absorbance unit based unit
type: Class
subclass of: dimensionless unit

count per nanomolar second based unit
type: Class
subclass of: rate unit

count per molar second based unit
type: Class
subclass of: rate unit

count per nanomolar based unit
type: Class
subclass of: rate unit

count per molar based unit
type: Class
subclass of: rate unit

dosage unit based unit
type: Class
subclass of: concentration unit

relative light unit based unit
type: Class
subclass of: light unit

relative luminescence unit based unit
type: Class
subclass of: relative light unit

relative fluorescence unit based unit
type: Class
subclass of: relative light unit

square micrometer based unit
type: Class
subclass of: area unit

hectare based unit
type: Class
subclass of: area unit

inch based unit
type: Class
subclass of: length unit

thou based unit
type: Class
subclass of: length unit

foot based unit
type: Class
subclass of: length unit

yard based unit
type: Class
subclass of: length unit

chain based unit
type: Class
subclass of: length unit

furlong based unit
type: Class
subclass of: length unit

mile based unit
type: Class
subclass of: length unit

league based unit
type: Class
subclass of: length unit

maritime length unit based unit
type: Class
subclass of: length unit

fathom based unit
type: Class
subclass of: maritime length unit

cable based unit
type: Class
subclass of: maritime length unit

nautical mile based unit
type: Class
subclass of: maritime length unit

perch based unit
type: Class
subclass of: area unit

rood based unit
type: Class
subclass of: area unit

acre based unit
type: Class
subclass of: area unit

fluid ounce based unit
type: Class
subclass of: volume unit

gill based unit
type: Class
subclass of: volume unit

pint based unit
type: Class
subclass of: volume unit

quart based unit
type: Class
subclass of: volume unit

gallon based unit
type: Class
subclass of: volume unit

grain based unit
type: Class
subclass of: mass unit

drachm based unit
type: Class
subclass of: mass unit

ounce based unit
type: Class
subclass of: mass unit

pound based unit
type: Class
subclass of: mass unit

stone based unit
type: Class
subclass of: mass unit

quarter based unit
type: Class
subclass of: mass unit

hundredweight based unit
type: Class
subclass of: mass unit

ton based unit
type: Class
subclass of: mass unit

slug based unit
type: Class
subclass of: energy unit

teaspoon based unit
type: Class
subclass of: volume unit

gram per square meter based unit
type: Class
subclass of: area density unit

experimental condition
type: Class
IAO_0000115: A state of being, an external or environmental factor or a treatment observed or administered prior to or concurrent with an investigative procedure such as an assessment of a morphological or physiological state or property in a single individual or sample or in a group of individuals or samples, especially a state, factor or treatment which has the potential to influence the outcome of such an assessment.

Axiom
annotated source: experimental condition
annotated property: IAO_0000115
annotated target: A state of being, an external or environmental factor or a treatment observed or administered prior to or concurrent with an investigative procedure such as an assessment of a morphological or physiological state or property in a single individual or sample or in a group of individuals or samples, especially a state, factor or treatment which has the potential to influence the outcome of such an assessment.
has db xref: Multiple_Dictionaries:http://www.thefreedictionary.com/
has db xref: PMID:22654893

Western Australian Mulga Shrublands Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Australasia Ecoregion
created by: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-05T17:25:21Z
has broad synonym: Western Australia Ecoregion
has db xref: WWF:AA1310
has db xref: https://www.worldwildlife.org/ecoregions/aa1310

Australasia Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
created by: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-05T17:51:32Z
has db xref: https://www.worldwildlife.org/biomes/deserts-and-xeric-shrublands

Tirari-Sturt Stony Desert Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Australasia Ecoregion
created by: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-05T17:52:41Z
has broad synonym: Southern central Australia Ecoregion
has db xref: WWF:AA1309
has db xref: https://www.worldwildlife.org/ecoregions/aa1309

Simpson Desert Region
type: NamedIndividual
type: terrestrial ecoregion
part of: Australasia Ecoregion
created by: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-05T17:54:35Z
has broad synonym: Eastern central Australia Ecoregion
has db xref: WWF:AA1308
has db xref: https://www.worldwildlife.org/ecoregions/aa1308

Pilbara Shrublands Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Australasia Ecoregion
created by: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-05T17:56:13Z
has broad synonym: Western Australia Ecoregion
has db xref: WWF:AA1307
has db xref: https://www.worldwildlife.org/ecoregions/aa1307

Carnarvon Xeric Shrublands Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Australasia Ecoregion
created by: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-05T18:10:52Z
has broad synonym: Western coast of Australia Ecoregion
has db xref: WWF:AA1301
has db xref: https://www.worldwildlife.org/ecoregions/aa1301

Central Ranges Xeric Shrub Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Australasia Ecoregion
created by: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-05T18:12:28Z
has broad synonym: Central Australia Ecoregion
has db xref: WWF:AA1302
has db xref: https://www.worldwildlife.org/ecoregions/aa1302

Gibson Desert Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Australasia Ecoregion
created by: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-05T18:15:11Z
has broad synonym: Western central Australia
has db xref: WWF:AA1303
has db xref: https://www.worldwildlife.org/ecoregions/aa1303

The Great Sandy-Tanami Desert Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Australasia Ecoregion
created by: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-05T18:17:15Z
has broad synonym: Northwestern Australia
has db xref: WWF:AA1304
has db xref: https://www.worldwildlife.org/ecoregions/aa1304

Great Victoria Desert Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Australasia Ecoregion
created by: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-05T18:24:06Z
has broad synonym: Southern Australia Ecoregion
has db xref: WWF:AA1305
has db xref: https://www.worldwildlife.org/ecoregions/aa1305

Nullarbor Plains Xeric Shrubland Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Australasia Ecoregion
created by: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-05T18:26:16Z
has broad synonym: Southern Australia Ecoregion
has db xref: WWF:AA1306
has db xref: https://www.worldwildlife.org/ecoregions/aa1306

Afrotropical Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
created by: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-06T22:01:41Z
has db xref: https://www.worldwildlife.org/biomes/deserts-and-xeric-shrublands

Succulent Karoo Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Afrotropical Ecoregion
created by: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-06T22:02:37Z
has broad synonym: Southern Africa: Southern Namibia into South Africa
has db xref: WWF:AT1322
has db xref: https://www.worldwildlife.org/ecoregions/at1322

Yemen and Saudi Arabia Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Afrotropical Ecoregion
created by: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-06T22:07:38Z
has db xref: WWF:AT1321
has db xref: https://www.worldwildlife.org/ecoregions/at1321
has exact synonym: Arabian Peninsula: Yemen and Saudi Arabia

Yemen, Saudi Arabia, and Oman Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Afrotropical Ecoregion
created by: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-06T22:11:38Z
has db xref: WWF:AT1320
has db xref: https://www.worldwildlife.org/ecoregions/at1320
has exact synonym: Arabian Peninsula: Yemen, Saudi Arabia, and Oman

Somali Montane Xeric Woodland Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Afrotropical Ecoregion
created by: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-06T22:13:00Z
has db xref: WWF:AT1319
has db xref: https://www.worldwildlife.org/ecoregions/at1319
has exact synonym: Somali montane xeric woodlands ecoregion

Socotran Archipelago Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Afrotropical Ecoregion
creator: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-06T22:15:07Z
has broad synonym: Islands east of the Horn of Africa and south of Yemen Ecoregion
has db xref: WWF:AT1318
has db xref: https://www.worldwildlife.org/ecoregions/at1318

Red Sea Coastal Desert Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Afrotropical Ecoregion
creator: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-06T22:18:55Z
has db xref: WWF:AT1317
has db xref: https://www.worldwildlife.org/ecoregions/at1317

Namibian Savanna Woodland Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Afrotropical Ecoregion
creator: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-06T22:20:56Z
has db xref: WWF:AT1316
has db xref: https://www.worldwildlife.org/ecoregions/at1316

Namib Desert Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Afrotropical Ecoregion
creator: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-06T22:24:28Z
has broad synonym: Africa: Namibia Ecoregion
has db xref: WWF:AT1315
has db xref: https://www.worldwildlife.org/ecoregions/at1315

Nama Karoo Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Afrotropical Ecoregion
creator: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-06T22:26:15Z
has db xref: WWF:AT1314
has db xref: https://www.worldwildlife.org/ecoregions/at1314

Masai Xeric Grasslands and Shrublands Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Afrotropical Ecoregion
creator: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-06T22:28:43Z
has db xref: WWF:AT1313
has db xref: https://www.worldwildlife.org/ecoregions/at1313

Madagascar Succulent Woodlands Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Afrotropical Ecoregion
creator: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-06T22:30:23Z
has db xref: WWF:AT1312
has db xref: https://www.worldwildlife.org/ecoregions/at1312

Madagascar Spiny Thickets Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Afrotropical Ecoregion
creator: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-06T22:31:29Z
has db xref: WWF:AT1311
has db xref: https://www.worldwildlife.org/ecoregions/at1311
has exact synonym: Madagascar spiny desert ecoregion

Kaokoveld Desert Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Afrotropical Ecoregion
creator: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-06T22:39:32Z
has db xref: WWF:AT1310
has db xref: https://www.worldwildlife.org/ecoregions/at1310
has exact synonym: Africa: Coastal Namibia and Angola Ecoregion

Kalahari Xeric Savanna Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Afrotropical Ecoregion
creator: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-06T22:42:47Z
has db xref: WWF:AT1309
has db xref: https://www.worldwildlife.org/ecoregions/at1309

Ile Europa and Bassas da India Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Afrotropical Ecoregion
creator: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-06T22:44:54Z
has db xref: WWF:AT1308
has db xref: https://www.worldwildlife.org/ecoregions/at1308
has exact synonym: Southern Africa: Islands about half-way between southern Madagascar and southern Mozambique Ecoregion

Hobyo Grassland and Shrubland Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Afrotropical Ecoregion
creator: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-06T22:46:58Z
has broad synonym: Eastern Africa: Somalia
has db xref: WWF:AT1307
has db xref: https://www.worldwildlife.org/ecoregions/at1307

Oman and United Arab Emirates Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Afrotropical Ecoregion
creator: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-06T22:54:57Z
has db xref: WWF:AT1306
has db xref: https://www.worldwildlife.org/ecoregions/at1306
has exact synonym: Arabian Peninsula: Oman and United Arab Emirates Ecoregion

Ethiopian Xeric Grasslands and Shrublands Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Afrotropical Ecoregion
creator: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-07T00:08:06Z
has db xref: WWF:AT1305
has db xref: https://www.worldwildlife.org/ecoregions/at1305

Eritrean Coastal Desert Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Afrotropical Ecoregion
creator: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-07T00:11:29Z
has db xref: WWF:AT1304
has db xref: https://www.worldwildlife.org/ecoregions/at1304

East Saharan Montane Xeric Woodland Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Afrotropical Ecoregion
creator: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-07T00:13:33Z
has db xref: WWF:AT1303
has db xref: https://www.worldwildlife.org/ecoregions/at1303
has exact synonym: North central Africa: Eastern Chad and small area of western Sudan

Oman, Yemen, and Saudi Arabia Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Afrotropical Ecoregion
creator: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-07T00:16:12Z
has db xref: WWF:AT1302
has db xref: https://www.worldwildlife.org/ecoregions/at1302
has exact synonym: Western Asia: Oman, Yemen, and Saudi Arabia Ecoregion

Aldabra Island Xeric Scrub Ecoregion
type: NamedIndividual
type: terrestrial ecoregion
part of: Afrotropical Ecoregion
creator: http://orcid.org/0000-0002-4366-3088
creation date: 2019-03-07T00:18:09Z
has db xref: WWF:AT1301
has db xref: https://www.worldwildlife.org/ecoregions/at1301

example to be eventually removed
type: NamedIndividual
type: curation status specification

failed exploratory term
type: NamedIndividual
type: obsolescence reason specification
IAO_0000115: The term was used in an attempt to structure part of the ontology but in retrospect failed to do a good job
IAO_0000117: Person:Alan Ruttenberg

metadata complete
type: NamedIndividual
type: curation status specification
IAO_0000115: Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete.

organizational term
type: NamedIndividual
type: curation status specification
IAO_0000115: term created to ease viewing/sort terms for development purpose, and will not be included in a release

ready for release
type: NamedIndividual
type: curation status specification
IAO_0000114: pending final vetting
IAO_0000115: Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking "ready_for_release" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed "ready_for_release" will also derived from a chain of ancestor classes that are also "ready_for_release."

metadata incomplete
type: NamedIndividual
type: curation status specification
IAO_0000115: Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors.

uncurated
type: NamedIndividual
type: curation status specification
IAO_0000115: Nothing done yet beyond assigning a unique class ID and proposing a preferred term.

pending final vetting
type: NamedIndividual
type: curation status specification
IAO_0000115: All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor.

core
type: NamedIndividual
type: Subset
IAO_0000115: Core is an instance of a grouping of terms from an ontology or ontologies. It is used by the ontology to identify main classes.
IAO_0000117: PERSON: Alan Ruttenberg
IAO_0000117: PERSON: Melanie Courtot

placeholder removed
type: NamedIndividual
type: obsolescence reason specification

terms merged
type: NamedIndividual
type: obsolescence reason specification
IAO_0000116: An editor note should explain what were the merged terms and the reason for the merge.

term imported
type: NamedIndividual
type: obsolescence reason specification
IAO_0000116: This is to be used when the original term has been replaced by a term imported from an other ontology. An editor note should indicate what is the URI of the new term to use.

term split
type: NamedIndividual
type: obsolescence reason specification
IAO_0000116: This is to be used when a term has been split in two or more new terms. An editor note should indicate the reason for the split and indicate the URIs of the new terms created.

other
type: NamedIndividual
type: obsolescence reason specification
IAO_0000116: This is to be used if none of the existing instances cover the reason for obsolescence. An editor note should indicate this new reason.
IAO_0000116: We expect to be able to mine these new reasons and add instances as required.
deprecated: true

universal
type: NamedIndividual
type: denotator type
IAO_0000116: Hard to give a definition for. Intuitively a "natural kind" rather than a collection of any old things, which a class is able to be, formally. At the meta level, universals are defined as positives, are disjoint with their siblings, have single asserted parents.
IAO_0000117: Alan Ruttenberg
IAO_0000119: A Formal Theory of Substances, Qualities, and Universals, http://ontology.buffalo.edu/bfo/SQU.pdf

defined class
type: NamedIndividual
type: denotator type
IAO_0000115: A defined class is a class that is defined by a set of logically necessary and sufficient conditions but is not a universal
IAO_0000116: "definitions", in some readings, always are given by necessary and sufficient conditions. So one must be careful (and this is difficult sometimes) to distinguish between defined classes and universal.
IAO_0000117: Alan Ruttenberg

named class expression
type: NamedIndividual
type: denotator type
IAO_0000115: A named class expression is a logical expression that is given a name. The name can be used in place of the expression.
IAO_0000116: named class expressions are used in order to have more concise logical definition but their extensions may not be interesting classes on their own. In languages such as OWL, with no provisions for macros, these show up as actuall classes. Tools may with to not show them as such, and to replace uses of the macros with their expansions
IAO_0000117: Alan Ruttenberg

to be replaced with external ontology term
type: NamedIndividual
type: curation status specification
IAO_0000115: Terms with this status should eventually replaced with a term from another ontology.
IAO_0000117: Alan Ruttenberg
IAO_0000119: group:OBI

requires discussion
type: NamedIndividual
type: curation status specification
IAO_0000114: pending final vetting
IAO_0000115: A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues.
IAO_0000117: Alan Ruttenberg
IAO_0000119: group:OBI

Earth
type: NamedIndividual
type: terrestrial planet
IAO_0000115: third planet from the Sun in the Solar System

Axiom
annotated source: Earth
annotated property: IAO_0000115
annotated target: third planet from the Sun in the Solar System
IAO_0000119: Earth

Suni
type: NamedIndividual
type: montane shrubland biome
type: Restriction
  on property: has part
  some values from: glacial valley
IAO_0000115: "Suni, or Jalca, is one of the eight Natural Regions of Peru. It is located in the Andes at an altitude between 3,500 and 4,000 metres above sea level. Suni has a dry and cold weather and there are many glacial valleys. The flora includes gramineous plants and shrubs such as the taya-taya (Caesalpinia spinosa), the quishuar (Buddleja coriacea), and the cantuta (Cantua buxifolia) which was considered sacred by the Incas. Even though it is hard for plants to grow because of the weather, people are able to cultivate such crops as quinoa, qañiwa, broad beans and ulluku (Ullucus tuberosus). The main fauna is the guinea pig and, among numerous other highland birds, the Chiguanco thrush."
has exact synonym: Jalca

Axiom
annotated source: Suni
annotated property: IAO_0000115
annotated target: "Suni, or Jalca, is one of the eight Natural Regions of Peru. It is located in the Andes at an altitude between 3,500 and 4,000 metres above sea level. Suni has a dry and cold weather and there are many glacial valleys. The flora includes gramineous plants and shrubs such as the taya-taya (Caesalpinia spinosa), the quishuar (Buddleja coriacea), and the cantuta (Cantua buxifolia) which was considered sacred by the Incas. Even though it is hard for plants to grow because of the weather, people are able to cultivate such crops as quinoa, qañiwa, broad beans and ulluku (Ullucus tuberosus). The main fauna is the guinea pig and, among numerous other highland birds, the Chiguanco thrush."
IAO_0000119: https://en.wikipedia.org/wiki/Suni_(geography)

World Ocean
type: NamedIndividual
type: ocean
part of: Earth
IAO_0000115: Earth's interconnected water system

Axiom
annotated source: World Ocean
annotated property: IAO_0000115
annotated target: Earth's interconnected water system
IAO_0000119: World Ocean

Axiom
annotated source: meter
annotated property: IAO_0000115
annotated target: A length unit which is equal to the length of the path traveled by light in vacuum during a time interval of 1/299 792 458 of a second.
has db xref: BIPM:BIPM
has db xref: NIST:NIST

Axiom
annotated source: kilogram
annotated property: IAO_0000115
annotated target: A mass unit which is equal to the mass of the International Prototype Kilogram kept by the BIPM at Svres, France.
has db xref: BIPM:BIPM
has db xref: NIST:NIST

Axiom
annotated source: second
annotated property: IAO_0000115
annotated target: A time unit which is equal to the duration of 9 192 631 770 periods of the radiation corresponding to the transition between the two hyperfine levels of the ground state of the caesium 133 atom.
has db xref: BIPM:BIPM
has db xref: NIST:NIST

Axiom
annotated source: centimeter
annotated property: IAO_0000115
annotated target: A length unit which is equal to one hundredth of a meter or 10^[-2] m.
has db xref: NIST:NIST

Axiom
annotated source: millimeter
annotated property: IAO_0000115
annotated target: A length unit which is equal to one thousandth of a meter or 10^[-3] m.
has db xref: NIST:NIST

Axiom
annotated source: gram
annotated property: IAO_0000115
annotated target: A mass unit which is equal to one thousandth of a kilogram or 10^[-3] kg.
has db xref: NIST:NIST

Axiom
annotated source: milligram
annotated property: IAO_0000115
annotated target: A mass unit which is equal to one thousandth of a gram or 10^[-3] g.
has db xref: UOC:GVG

Axiom
annotated source: degree Celsius
annotated property: IAO_0000115
annotated target: A temperature unit which is equal to one kelvin degree. However, they have their zeros at different points. The centigrade scale has its zero at 273.15 K.
has db xref: NIST:NIST

Axiom
annotated source: minute
annotated property: IAO_0000115
annotated target: A time unit which is equal to 60 seconds.
has db xref: Wikipedia:Wikipedia

Axiom
annotated source: hour
annotated property: IAO_0000115
annotated target: A time unit which is equal to 3600 seconds or 60 minutes.
has db xref: Wikipedia:Wikipedia

Axiom
annotated source: day
annotated property: IAO_0000115
annotated target: A time unit which is equal to 24 hours.
has db xref: Wikipedia:Wikipedia

Axiom
annotated source: week
annotated property: IAO_0000115
annotated target: A time unit which is equal to 7 days.
has db xref: Wikipedia:Wikipedia

Axiom
annotated source: month
annotated property: IAO_0000115
annotated target: A time unit which is approximately equal to the length of time of one of cycle of the moon's phases which in science is taken to be equal to 30 days.
has db xref: Wikipedia:Wikipedia

Axiom
annotated source: year
annotated property: IAO_0000115
annotated target: A time unit which is equal to 12 months which in science is taken to be equal to 365.25 days.
has db xref: Wikipedia:Wikipedia

Axiom
annotated source: milliliter
annotated property: IAO_0000115
annotated target: A volume unit which is equal to one thousandth of a liter or 10^[-3] L, or to 1 cubic centimeter.
has db xref: NIST:NIST

Axiom
annotated source: liter
annotated property: IAO_0000115
annotated target: A volume unit which is equal to one thousandth of a cubic meter or 10^[-3] m^[3], or to 1 decimeter.
has db xref: NIST:NIST

Axiom
annotated source: mass percentage
annotated property: IAO_0000115
annotated target: A dimensionless concentration unit which denotes the mass of a substance in a mixture as a percentage of the mass of the entire mixture.
has db xref: Wikipedia:Wikipedia

Axiom
annotated source: gram per liter
annotated property: IAO_0000115
annotated target: A mass unit density which is equal to mass of an object in grams divided by the volume in liters.
has db xref: UOC:GVG

Axiom
annotated source: degree Fahrenheit
annotated property: IAO_0000115
annotated target: A temperature unit which is equal to 5/9ths of a kelvin. Negative 40 degrees Fahrenheit is equal to negative 40 degrees Celsius.
has db xref: Wikipedia:Wikipedia

Axiom
annotated source: pH
annotated property: IAO_0000115
annotated target: A dimensionless concentration notation which denotes the acidity of a solution in terms of activity of hydrogen ions (H+).
has db xref: Wikipedia:Wikipedia

Axiom
annotated source: microliters per minute
annotated property: IAO_0000115
annotated target: A volumetric flow rate unit which is equal to one microliter volume through a given surface in one minute.
has db xref: UOC:GVG

infer input from direct reg
is rule enabled: true
comment: MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z
type: Imp
body: ClassAtom
  class predicate: molecular_function
  argument1: http://purl.obolibrary.org/obo/ro.owl#x
body: ClassAtom
  class predicate: molecular_function
  argument1: http://purl.obolibrary.org/obo/ro.owl#y
body: IndividualPropertyAtom
  property predicate: directly regulates
  argument1: http://purl.obolibrary.org/obo/ro.owl#x
  argument2: http://purl.obolibrary.org/obo/ro.owl#y
body: IndividualPropertyAtom
  property predicate: enables
  argument1: http://purl.obolibrary.org/obo/ro.owl#z
  argument2: http://purl.obolibrary.org/obo/ro.owl#y
head: IndividualPropertyAtom
  property predicate: has input
  argument1: http://purl.obolibrary.org/obo/ro.owl#x
  argument2: http://purl.obolibrary.org/obo/ro.owl#z

contrib to MF
is rule enabled: true
comment: GP(X) part_of complex(Y) enables MF(Z) -> X contributes_to Z
type: Imp
body: IndividualPropertyAtom
  property predicate: part of
  argument1: http://purl.obolibrary.org/obo/ro.owl#x
  argument2: http://purl.obolibrary.org/obo/ro.owl#y
body: IndividualPropertyAtom
  property predicate: enables
  argument1: http://purl.obolibrary.org/obo/ro.owl#y
  argument2: http://purl.obolibrary.org/obo/ro.owl#z
body: ClassAtom
  class predicate: molecular_function
  argument1: http://purl.obolibrary.org/obo/ro.owl#z
head: IndividualPropertyAtom
  property predicate: contributes to
  argument1: http://purl.obolibrary.org/obo/ro.owl#x
  argument2: http://purl.obolibrary.org/obo/ro.owl#z

enabling an MF enables its parts
comment: GP(X)-enables->MF(Y)-has_part->MF(Z) => GP(X) enables MF(Z), e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase coupled transporter activity' has_part 'ATPase activity' then GP(X) enables 'ATPase activity'
type: Imp
body: IndividualPropertyAtom
  property predicate: enables
  argument1: x
  argument2: y
body: IndividualPropertyAtom
  property predicate: has part
  argument1: y
  argument2: z
body: ClassAtom
  class predicate: molecular_function
  argument1: y
head: IndividualPropertyAtom
  property predicate: enables
  argument1: x
  argument2: z

involved in BP
is rule enabled: true
comment: GP(X)-enables->MF(Y)-part_of->BP(Z) => GP(X) involved_in BP(Z) e.g. if X enables 'protein kinase activity' and Y 'part of' 'signal tranduction' then X involved in 'signal transduction'
type: Imp
body: IndividualPropertyAtom
  property predicate: enables
  argument1: x
  argument2: y
body: IndividualPropertyAtom
  property predicate: part of
  argument1: y
  argument2: z
body: ClassAtom
  class predicate: biological_process
  argument1: z
head: IndividualPropertyAtom
  property predicate: involved in
  argument1: x
  argument2: z

From ligand activity to has_ligand
type: Imp
body: IndividualPropertyAtom
  property predicate: enables
  argument1: y
  argument2: z
body: IndividualPropertyAtom
  property predicate: directly regulates
  argument1: z
  argument2: x
body: ClassAtom
  class predicate: receptor ligand activity
  argument1: z
head: IndividualPropertyAtom
  property predicate: has ligand
  argument1: x
  argument2: y

Imp
comment: This rule is dubious: added as a quick fix for expected inference in GO-CAM. The problem is most acute for transmembrane proteins, such as receptors or cell adhesion molecules, which have some subfunctions inside the cell (e.g. kinase activity) and some subfunctions outside (e.g. ligand binding). Correct annotation of where these functions occurs leads to incorrect inference about the location of the whole protein. This should probably be weakened to "... -> overlaps"
body: IndividualPropertyAtom
  property predicate: enables
  argument1: x
  argument2: y
body: IndividualPropertyAtom
  property predicate: occurs in
  argument1: y
  argument2: z
head: IndividualPropertyAtom
  property predicate: part of
  argument1: x
  argument2: z

inferring direct reg edge from input to regulatory subfunction
comment: If a molecular function (X) has a regulatory subfunction, then any gene product which is an input to that subfunction has an activity that directly_regulates X. Note: this is intended for cases where the regaultory subfunction is protein binding, so it could be tightened with an additional clause to specify this.
type: Imp
body: IndividualPropertyAtom
  property predicate: input of
  argument1: B
  argument2: C
body: IndividualPropertyAtom
  property predicate: enabled by
  argument1: A
  argument2: B
body: IndividualPropertyAtom
  property predicate: has regulatory component activity
  argument1: D
  argument2: C
head: IndividualPropertyAtom
  property predicate: directly regulates
  argument1: A
  argument2: D

inferring direct neg reg edge from input to regulatory subfunction
type: Imp
body: IndividualPropertyAtom
  property predicate: input of
  argument1: B
  argument2: C
body: IndividualPropertyAtom
  property predicate: enabled by
  argument1: A
  argument2: B
body: IndividualPropertyAtom
  property predicate: has negative regulatory component activity
  argument1: D
  argument2: C
head: IndividualPropertyAtom
  property predicate: directly negatively regulates
  argument1: A
  argument2: D

inferring direct positive reg edge from input to regulatory subfunction
type: Imp
body: IndividualPropertyAtom
  property predicate: input of
  argument1: B
  argument2: C
body: IndividualPropertyAtom
  property predicate: enabled by
  argument1: A
  argument2: B
body: IndividualPropertyAtom
  property predicate: has positive regulatory component activity
  argument1: D
  argument2: C
head: IndividualPropertyAtom
  property predicate: directly positively regulates
  argument1: A
  argument2: D

From has_ligand to ligand activity
type: Imp
body: IndividualPropertyAtom
  property predicate: has ligand
  argument1: x
  argument2: y
body: IndividualPropertyAtom
  property predicate: enables
  argument1: y
  argument2: z
head: IndividualPropertyAtom
  property predicate: directly regulates
  argument1: z
  argument2: x
head: ClassAtom
  class predicate: receptor ligand activity
  argument1: z

effector input is compound function input
type: Imp
body: IndividualPropertyAtom
  property predicate: has effector activity
  argument1: mf
  argument2: eff
body: IndividualPropertyAtom
  property predicate: has input
  argument1: eff
  argument2: in
head: IndividualPropertyAtom
  property predicate: has input
  argument1: mf
  argument2: in

Input of effector is input of its parent MF
type: Imp
body: IndividualPropertyAtom
  property predicate: has effector activity
  argument1: mf
  argument2: eff
body: IndividualPropertyAtom
  property predicate: has input
  argument1: mf
  argument2: in
head: IndividualPropertyAtom
  property predicate: has input
  argument1: eff
  argument2: in

Imp
comment: if effector directly regulates X, its parent MF directly regulates X
body: IndividualPropertyAtom
  property predicate: directly regulates
  argument1: mf
  argument2: mf2
body: IndividualPropertyAtom
  property predicate: has effector activity
  argument1: mf
  argument2: eff
head: IndividualPropertyAtom
  property predicate: directly regulates
  argument1: eff
  argument2: mf2

Imp
comment: if effector directly positively regulates X, its parent MF directly positively regulates X
body: IndividualPropertyAtom
  property predicate: has effector activity
  argument1: mf
  argument2: eff
body: IndividualPropertyAtom
  property predicate: directly positively regulates
  argument1: mf
  argument2: mf2
head: IndividualPropertyAtom
  property predicate: directly positively regulates
  argument1: eff
  argument2: mf2

if effector directly negatively regulates X, its parent MF directly negatively regulates X
type: Imp
body: IndividualPropertyAtom
  property predicate: directly negatively regulates
  argument1: mf
  argument2: mf2
body: IndividualPropertyAtom
  property predicate: has effector activity
  argument1: mf
  argument2: eff
head: IndividualPropertyAtom
  property predicate: directly negatively regulates
  argument1: eff
  argument2: mf2

'causally downstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).
type: Imp
body: IndividualPropertyAtom
  property predicate: overlaps
  argument1: x
  argument2: y
body: IndividualPropertyAtom
  property predicate: causally downstream of
  argument1: x
  argument2: y
head: ClassAtom
  class predicate: Nothing
  argument1: y
head: ClassAtom
  class predicate: Nothing
  argument1: x

'causally upstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).
type: Imp
body: IndividualPropertyAtom
  property predicate: overlaps
  argument1: x
  argument2: y
body: IndividualPropertyAtom
  property predicate: causally upstream of
  argument1: x
  argument2: y
head: ClassAtom
  class predicate: Nothing
  argument1: y
head: ClassAtom
  class predicate: Nothing
  argument1: x