# NCAA route settings; declare method=ncaa in #parmfit(...) and reference this file via input= # Only non-default entries are listed; the generated parmfitrun.in shows every resolved value. # Two residues declared together; charges/names pair 1:1 with ncaa_resids ncaa_resids=HIF89,TRP482 ncaa_charges=-2,0 ncaa_resnames=HF1,WF1 chg_level=HF/6-31G(d) # Per-residue torsion bond groups separated by ';': # HIF89: 3-8 chi1, 8-11 chi2, 6-60 covalent His-FAD link, 22-25 ribityl # TRP482: 5-6 (CB-CG) torsionfit=true torsion_bonds=3-8,8-11,6-60,22-25;5-6