The RNA Ontology (RNAO): An Ontology for Integrating RNA Sequence and Structure Data
type: Ontology
contributor: Francois Major
contributor: Eric Westhof
contributor: Jesse Stombaugh
contributor: Jane S. Richardson
contributor: Neocles Leontis
contributor: Iga Korneta
contributor: Colin Batchelor
date: 2010-05-17T23:35:00
contributor: Robert Hoehndorf
contributor: Michel Dumontier
contributor: Craig L. Zirbel
contributor: Jose Cruz-Toledo
contributor: Kristian Rother
contributor: Rob Knight
contributor: Thomas Bittner
contributor: Chris J. Mungall
contributor: Karen Eilbeck
imports: http://www.ifomis.org/bfo/1.1
imports: ro.owl

obsolete relation
type: ObjectProperty

linear RNA backbone of
type: ObjectProperty
domain: linear RNA backbone
inverse of: has linear RNA backbone
sub property of: RNA backbone of
range: Class
  union of: ribonucleic acid
  union of: RNA suite
  union of: ribonucleotide residue

has linear RNA backbone
type: ObjectProperty
sub property of: has RNA backbone

RNA backbone of
type: ObjectProperty
domain: RNA backbone
sub property of: submolecule of
range: Class
  union of: ribonucleic acid
  union of: RNA suite
  union of: ribonucleotide residue

has RNA backbone
type: ObjectProperty
inverse of: RNA backbone of
sub property of: has submolecule

has direct part
type: ObjectProperty
inverse of: direct part of
sub property of: has proper part

direct part of
type: ObjectProperty
sub property of: proper part of

connected to
type: ObjectProperty
type: SymmetricProperty
type: TransitiveProperty

covalently connected to (transitive)
type: ObjectProperty
type: TransitiveProperty
domain: submolecule
range: submolecule
sub property of: connected to

covalently bonded to (transitive)
type: ObjectProperty
type: TransitiveProperty
domain: atom
range: atom
sub property of: covalently connected to (transitive)

covalently bonded to
type: ObjectProperty
type: IrreflexiveProperty
type: SymmetricProperty
domain: atom
range: atom
sub property of: covalently bonded to (transitive)

covalently connected to
type: ObjectProperty
type: SymmetricProperty
sub property of: covalently connected to (transitive)

backbone connected to
type: ObjectProperty
domain: nucleotide residue
range: nucleotide residue
sub property of: covalently connected to

covalently connected 5prime to 5prime
type: ObjectProperty
type: FunctionalProperty
type: SymmetricProperty
sub property of: backbone connected to
property disjoint with: covalently connected 5prime to 2prime

covalently connected 5prime to 3prime
type: ObjectProperty
type: FunctionalProperty
sub property of: backbone connected to

covalently connected 5prime to 2prime
type: ObjectProperty
type: FunctionalProperty
sub property of: backbone connected to
inverse of: covalently connected 2prime to 5prime

covalently connected 3prime to 5prime
type: ObjectProperty
type: FunctionalProperty
sub property of: backbone connected to
inverse of: covalently connected 5prime to 3prime

covalently connected 3prime to 3prime
type: ObjectProperty
type: FunctionalProperty
type: SymmetricProperty
sub property of: backbone connected to

covalently connected 3prime to 2prime
type: ObjectProperty
type: FunctionalProperty
sub property of: backbone connected to

covalently connected 2prime to 5prime
type: ObjectProperty
type: FunctionalProperty
sub property of: backbone connected to
property disjoint with: covalently connected 2prime to 3prime

covalently connected 2prime to 3prime
type: ObjectProperty
type: FunctionalProperty
sub property of: backbone connected to
inverse of: covalently connected 3prime to 2prime

weakly interacting with (transitive)
type: ObjectProperty
type: SymmetricProperty
type: TransitiveProperty
sub property of: connected to
range: Class
  union of: atom
  union of: non-covalent boundary
  union of: molecule
  union of: submolecule
domain: Class
  union of: atom
  union of: non-covalent boundary
  union of: molecule
  union of: submolecule

weakly interacting with
type: ObjectProperty
type: SymmetricProperty
sub property of: weakly interacting with (transitive)

pairs with
type: ObjectProperty
domain: ribonucleotide residue
sub property of: weakly interacting with
property disjoint with: stacks with
range: Class
  union of: phosphate moiety
  union of: ribonucleotide residue

stacks with
type: ObjectProperty
type: IrreflexiveProperty
type: SymmetricProperty
range: nucleotide residue
domain: nucleotide residue
sub property of: weakly interacting with

stacks 5prime face to 5prime face
type: ObjectProperty
type: SymmetricProperty
sub property of: stacks with
property disjoint with: stacks 5prime face to 3prime face

stacks 5prime face to 3prime face
type: ObjectProperty
sub property of: stacks with
inverse of: stacks 3prime face to 5prime face

stacks 3prime face to 5prime face
type: ObjectProperty
sub property of: stacks with
property disjoint with: stacks 3prime face to 3prime face

stacks 3prime face to 3prime face
type: ObjectProperty
type: SymmetricProperty
sub property of: stacks with

pairs with HH
type: ObjectProperty
type: FunctionalProperty
sub property of: pairs with
property disjoint with: interacts with HPh

pairs with CHH
type: ObjectProperty
type: FunctionalProperty
sub property of: pairs with HH

pairs with THH
type: ObjectProperty
type: FunctionalProperty
sub property of: pairs with HH

pairs with HS
type: ObjectProperty
type: FunctionalProperty
sub property of: pairs with
property disjoint with: interacts with HPh

pairs with CHS
type: ObjectProperty
type: FunctionalProperty
sub property of: pairs with HS

pairs with THS
type: ObjectProperty
type: FunctionalProperty
sub property of: pairs with HS

pairs with HW
type: ObjectProperty
type: FunctionalProperty
sub property of: pairs with
inverse of: pairs with WH
property disjoint with: interacts with HPh

pairs with CHW
type: ObjectProperty
type: FunctionalProperty
sub property of: pairs with HW

pairs with THW
type: ObjectProperty
type: FunctionalProperty
sub property of: pairs with HW

pairs with SH
type: ObjectProperty
type: FunctionalProperty
sub property of: pairs with
property disjoint with: interacts with 1BPh

pairs with CSH
type: ObjectProperty
type: FunctionalProperty
inverse of: pairs with CHS
sub property of: pairs with SH

pairs with TSH
type: ObjectProperty
type: FunctionalProperty
inverse of: pairs with THS
sub property of: pairs with SH

pairs with SS
type: ObjectProperty
type: FunctionalProperty
sub property of: pairs with
property disjoint with: interacts with 1BPh

pairs with CSS
type: ObjectProperty
type: FunctionalProperty
sub property of: pairs with SS

pairs with TSS
type: ObjectProperty
type: FunctionalProperty
sub property of: pairs with SS

pairs with SW
type: ObjectProperty
type: FunctionalProperty
sub property of: pairs with
property disjoint with: interacts with 1BPh

pairs with CSW
type: ObjectProperty
type: FunctionalProperty
sub property of: pairs with SW

pairs with TSW
type: ObjectProperty
type: FunctionalProperty
sub property of: pairs with SW
inverse of: pairs with TWS

pairs with WH
type: ObjectProperty
type: FunctionalProperty
sub property of: pairs with
property disjoint with: pairs with WS
property disjoint with: pairs with WW
property disjoint with: interacts with WPh

pairs with CWH
type: ObjectProperty
type: FunctionalProperty
inverse of: pairs with CHW
sub property of: pairs with WH
property disjoint with: pairs with TWH

pairs with TWH
type: ObjectProperty
type: FunctionalProperty
inverse of: pairs with THW
sub property of: pairs with WH

pairs with WS
type: ObjectProperty
type: FunctionalProperty
sub property of: pairs with
property disjoint with: pairs with WW
property disjoint with: interacts with WPh

pairs with CWS
type: ObjectProperty
type: FunctionalProperty
inverse of: pairs with CSW
sub property of: pairs with WS

pairs with TWS
type: ObjectProperty
type: FunctionalProperty
sub property of: pairs with WS

pairs with WW
type: ObjectProperty
type: FunctionalProperty
sub property of: pairs with
property disjoint with: interacts with WPh

pairs with CWW
type: ObjectProperty
type: FunctionalProperty
type: SymmetricProperty
sub property of: pairs with WW

pairs with TWW
type: ObjectProperty
type: FunctionalProperty
type: SymmetricProperty
sub property of: pairs with WW

boundary of
type: ObjectProperty

external boundary of
type: ObjectProperty
sub property of: boundary of

has boundary
type: ObjectProperty
inverse of: boundary of

has external boundary
type: ObjectProperty
inverse of: external boundary of
sub property of: has boundary

has member
type: ObjectProperty
sub property of: has part

member of
type: ObjectProperty
inverse of: has member
sub property of: part of
property chain axiom: subcollection of

subcollection of
type: ObjectProperty
inverse of: has subcollection
sub property of: part of

submolecule of
type: ObjectProperty
domain: part of molecule
inverse of: has submolecule
sub property of: part of
range: Class
  union of: molecule
  union of: part of molecule

has submolecule
type: ObjectProperty
sub property of: has part

has subcollection
type: ObjectProperty
sub property of: has part

overlaps
type: ObjectProperty

covalently bonded sum of
type: ObjectProperty

same chain
type: ObjectProperty
type: SymmetricProperty
type: TransitiveProperty

corresponds to
type: ObjectProperty
type: ReflexiveProperty
type: SymmetricProperty
type: TransitiveProperty

corresponds to, nucleotide by nucleotide
type: ObjectProperty
type: SymmetricProperty
sub property of: corresponds to

suite of
type: ObjectProperty
sub property of: submolecule of
inverse of: has suite

has suite
type: ObjectProperty
sub property of: has submolecule

has face
type: ObjectProperty
sub property of: has boundary

face of
type: ObjectProperty
type: FunctionalProperty
domain: nucleobase face
range: nucleotide residue
sub property of: boundary of
inverse of: has face

5prime face of
type: ObjectProperty
type: FunctionalProperty
domain: 5prime face
sub property of: face of
inverse of: has 5prime face

3prime face of
type: ObjectProperty
type: FunctionalProperty
domain: 3prime face
sub property of: face of
inverse of: has 3prime face

has 5prime face
type: ObjectProperty
type: FunctionalProperty
sub property of: has face

has 3prime face
type: ObjectProperty
type: FunctionalProperty
sub property of: has face

has edge
type: ObjectProperty
sub property of: has boundary

edge of
type: ObjectProperty
type: FunctionalProperty
domain: nucleoside edge
range: nucleotide residue
sub property of: boundary of
inverse of: has edge

has sugar edge
type: ObjectProperty
type: FunctionalProperty
sub property of: has edge

has Hoogsteen edge
type: ObjectProperty
type: FunctionalProperty
sub property of: has edge

has Watson-Crick edge
type: ObjectProperty
type: FunctionalProperty
sub property of: has edge

is Hoogsteen edge of
type: ObjectProperty
type: FunctionalProperty
domain: Hoogsteen edge
sub property of: edge of
inverse of: has Hoogsteen edge

is sugar edge of
type: ObjectProperty
type: FunctionalProperty
domain: sugar edge
sub property of: edge of
inverse of: has sugar edge

is Watson-Crick edge of
type: ObjectProperty
type: FunctionalProperty
domain: Watson-Crick edge
sub property of: edge of
inverse of: has Watson-Crick edge

sum of collection
type: ObjectProperty
range: collection of material entities
domain: MaterialEntity

covalently connected 5prime to 3prime (transitive)
type: ObjectProperty
type: TransitiveProperty
comment: synonym: 3prime_to
sub property of: obsolete relation

covalently connected 3prime to 5prime (transitive)
type: ObjectProperty
type: TransitiveProperty
comment: Synonym: 5prime_to
sub property of: obsolete relation

hydrogen bonds with
type: ObjectProperty
type: IrreflexiveProperty
type: SymmetricProperty
domain: atom
range: atom
sub property of: weakly interacting with

has functional parent
type: ObjectProperty
sub property of: topObjectProperty

interacts with 1BPh
type: ObjectProperty
description: Pairwise interaction of the sugar edge with a phosphate unit. Only occurs with G.
sub property of: obsolete relation
range: phosphate moiety
domain: guanylate residue

has quality
type: ObjectProperty

5,6-dihydrouracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Class
    intersection of: Restriction
      on property: has direct part
      on class: Class
        intersection of: hydrogen atom
        intersection of: Restriction
      qualified cardinality: 2
    intersection of: Restriction
      on property: has direct part
      on class: Class
        intersection of: hydrogen atom
        intersection of: Restriction
      qualified cardinality: 2
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

1-methyladenosine residue
type: Class
equivalent class: Class
  intersection of: adenosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 1-methyladenine nucleobase
    qualified cardinality: 1
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue

beta-D-galactosyl group
type: Class
subclass of: group

hypoxanthine nucleobase
type: Class
equivalent class: Class
  intersection of: adenine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: oxo group
      intersection of: Restriction
        on property: covalently connected to
        some values from: purine C6 atom
    qualified cardinality: 1
subclass of: guanine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase

inosine residue
type: Class
equivalent class: Class
  intersection of: adenosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: hypoxanthine nucleobase
    qualified cardinality: 1
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue

pseudouridine residue
type: Class
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

1-methylguanosine residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 1-methylguanine nucleobase
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

1-methylinosine residue
type: Class
equivalent class: Class
  intersection of: adenosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 1-methylhypoxanthine nucleobase
    qualified cardinality: 1
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue

1-methylpseudouridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 1-methyluracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

2prime-O-methyluridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylribose ring
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

2prime-O-methylcytidine residue
type: Class
equivalent class: Class
  intersection of: cytidine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylribose ring
    qualified cardinality: 1
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue

2prime-O-methylguanosine residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylribose ring
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

2prime-O-methylpseudouridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylribose ring
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

N2,N2-dimethylguanosine residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N2,N2-dimethylguanine nucleobase
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

2-methyladenosine residue
type: Class
equivalent class: Class
  intersection of: adenosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2-methyladenine nucleobase
    qualified cardinality: 1
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue

N2-methylguanosine residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N2-methylguanine nucleobase
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

2-thiocytidine residue
type: Class
equivalent class: Class
  intersection of: cytidine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2-thiocytosine nucleobase
    qualified cardinality: 1
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue

3-(3-amino-3-carboxypropyl)uridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 3-(3-amino-3-carboxypropyl)uracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

3-methylcytidine residue
type: Class
equivalent class: Class
  intersection of: cytidine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 3-methylcytosine nucleobase
    qualified cardinality: 1
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue

N4-acetylcytidine residue
type: Class
equivalent class: Class
  intersection of: cytidine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N4-acetylcytosine nucleobase
    qualified cardinality: 1
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue

4-thiouridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 4-thiouracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-(carboxyhydroxymethyl)uridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-(carboxyhydroxymethyl)uracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-carboxymethylaminomethyl-2-thiouridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-carboxymethylaminomethyl-2-thiouracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-methoxycarbonylmethyl-2-thiouridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-methoxycarbonylmethyl-2-thiouracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-methoxycarbonylmethyluridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-methoxycarbonylmethyluracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-methoxyuridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-methoxyuracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-methyl-2-thiouridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-methyl-2-thiouracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-methylcytidine residue
type: Class
equivalent class: Class
  intersection of: cytidine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-methylcytosine nucleobase
    qualified cardinality: 1
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue

7-methylguanosine residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 7-methylguanine nucleobase
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

N6-methyladenosine residue
type: Class
equivalent class: Class
  intersection of: adenosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N6-methyladenine nucleobase
    qualified cardinality: 1
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue

glutamyl group
type: Class
subclass of: group
RNAO_1000027: 2-amino-4-carboxybutanoyl

3-amino-3-carboxypropyl group
type: Class
subclass of: group

carbamoyl group
type: Class
subclass of: group
RNAO_1000027: -C(O)NH2

dihydrouridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5,6-dihydrouracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

group
type: Class
subclass of: submolecule

hydroxymethyl group
type: Class
subclass of: group

mannosyl group
type: Class
subclass of: group
comment: probably a beta-D-mannosyl group

oxygen atom
type: Class
subclass of: atom
comment: from CHEBI

hydroperoxyl
type: Class
subclass of: group

prenyl group
type: Class
subclass of: group
RNAO_1000027: 3-methylbut-2-en-1-yl

ribosyl group
type: Class
subclass of: group

tauryl group
type: Class
subclass of: group
RNAO_1000027: (2-aminoethyl)sulfonyl

uridine 5-oxyacetic acid residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: uracil 5-oxyaceticacid nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

carbon atom
type: Class
subclass of: atom
comment: from CHEBI

N6,N6-dimethyladenosine residue
type: Class
equivalent class: Class
  intersection of: adenosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N6,N6-dimethyladenine nucleobase
    qualified cardinality: 1
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue

phosphorous atom
type: Class
subclass of: atom
comment: from CHEBI

hydrogen atom
type: Class
subclass of: atom
comment: from CHEBI

nitrogen atom
type: Class
subclass of: atom
comment: from CHEBI

methyl group
type: Class
subclass of: group
RNAO_1000027: -CH3

phosphate group
type: Class
subclass of: group
RNAO_1000027: -O-P(O)(OH)2

atom
type: Class
subclass of: MaterialEntity
disjoint with: molecule
comment: from CHEBI

threonyl group
type: Class
subclass of: group
RNAO_1000027: rel-(2R,3S)-2-amino-3-hydroxybutanoyl

lysyl group
type: Class
subclass of: group
RNAO_1000027: 2,6-diaminohexanoyl

acetyl group
type: Class
subclass of: group
RNAO_1000027: -(O)C-CH3

carboxymethyl group
type: Class
subclass of: group
RNAO_1000027: -CH2-COOH

formyl group
type: Class
subclass of: group
RNAO_1000027: -CHO

hydroxy group
type: Class
subclass of: group
RNAO_1000027: -OH

methylamino group
type: Class
subclass of: group
RNAO_1000027: -NH-CH3

methoxy group
type: Class
subclass of: group
RNAO_1000027: CH3-O-

oxo group
type: Class
subclass of: group
RNAO_1000027: =O

glycyl group
type: Class
subclass of: group
RNAO_1000027: H2N-CH2-CO-

amino group
type: Class
subclass of: group
RNAO_1000027: -NH2

carboxy group
type: Class
subclass of: group
RNAO_1000027: -C(O)OH

cyano group
type: Class
subclass of: group
RNAO_1000027: -CN

ribonucleic acid
type: Class
subclass of: nucleic acid
comment: 3prime-5prime RNA
comment: 5prime-3prime RNA

base pair
type: Class
equivalent class: Class
  intersection of: MaterialEntity
  intersection of: Restriction
    on property: has part
    some values from: Class
      intersection of: nucleobase
      intersection of: Restriction
        on property: pairs with
        some values from: nucleobase
subclass of: MaterialEntity
description: A base pair consists of a pair of nucleotide residues that interact by nucleoside edge to nucleoside edge hydrogen bonds.

deoxyribose ring
type: Class
subclass of: furanose ring
description: A ribose ring that does not have a hydroxy group at the 2prime position.

family 1 base pair
type: Class
equivalent class: Class
  intersection of: cis-oriented base pair
  intersection of: Class
    complement of: Restriction
      on property: has direct part
      on class: guanine nucleobase
      qualified cardinality: 2
  intersection of: Restriction
    on property: has part
    some values from: Class
      intersection of: nucleobase
      intersection of: Restriction
        on property: has boundary
        some values from: Class
  intersection of: Restriction
    on property: has direct part
    on class: ribonucleoside residue
    qualified cardinality: 2
subclass of: cis-oriented base pair
description: A family_1_base_pair is an RNAO_base_pair in which the two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Watson-Crick edges of each base and in which the glycosidic bonds of the two nucleotides are oriented "cis" relative to each other.

family 2 base pair
type: Class
equivalent class: Class
  intersection of: trans-oriented base pair
  intersection of: Class
    complement of: Class
      intersection of: Restriction
        on property: has part
        some values from: adenine nucleobase
      intersection of: Restriction
        on property: has part
        some values from: guanine nucleobase
  intersection of: Restriction
    on property: has part
    some values from: Class
      intersection of: nucleobase
      intersection of: Restriction
        on property: has boundary
        some values from: Class
  intersection of: Restriction
    on property: has direct part
    on class: ribonucleoside residue
    qualified cardinality: 2
subclass of: trans-oriented base pair
description: A family_2_base_pair is an RNAO_base_pair in which the two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Watson-Crick edges of each base and in which the glycosidic bonds of the two nucleotides are oriented "trans" relative to each other.

family 3 base pair
type: Class
equivalent class: Class
  intersection of: cis-oriented base pair
  intersection of: Restriction
    on property: has part
    some values from: Class
      intersection of: nucleobase
      intersection of: Restriction
        on property: has boundary
        some values from: Class
  intersection of: Restriction
    on property: has direct part
    on class: ribonucleoside residue
    qualified cardinality: 2
subclass of: cis-oriented base pair
description: A family_3_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Watson-Crick edge of one base and the Hoogsteen edge of the other base and in which the glycosidic bonds of the two nucleotides are oriented "cis" relative to each other.
comment: Forbidden pairings (Watson-Crick edge first); CA, UC, AC, AA, GC, GU.

family 4 base pair
type: Class
equivalent class: Class
  intersection of: trans-oriented base pair
  intersection of: Restriction
    on property: has part
    some values from: Class
      intersection of: nucleobase
      intersection of: Restriction
        on property: has boundary
        some values from: Class
  intersection of: Restriction
    on property: has direct part
    on class: ribonucleoside residue
    qualified cardinality: 2
subclass of: trans-oriented base pair
description: A family_4_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Watson-Crick edge of one base and the Hoogsteen edge of the other base and in which the glycosidic bonds of the two nucleotides are oriented "trans" relative to each other.
comment: Forbidden are the following pairings (Watson-Crick edge first); CU, UC, AC, AU, GC, GA.

family 5 base pair
type: Class
equivalent class: Class
  intersection of: cis-oriented base pair
  intersection of: Restriction
    on property: has part
    some values from: Class
      intersection of: nucleobase
      intersection of: Restriction
        on property: has boundary
        some values from: Class
  intersection of: Restriction
    on property: has direct part
    on class: ribonucleoside residue
    qualified cardinality: 2
subclass of: cis-oriented base pair
description: A family_5_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Watson-Crick edge of one base and the Sugar edge of the other base and in which the glycosidic bonds of the two nucleotides are oriented "cis" relative to each other.

family 6 base pair
type: Class
equivalent class: Class
  intersection of: trans-oriented base pair
  intersection of: Restriction
    on property: has part
    some values from: Class
      intersection of: nucleobase
      intersection of: Restriction
        on property: has boundary
        some values from: Class
  intersection of: Restriction
    on property: has direct part
    on class: ribonucleoside residue
    qualified cardinality: 2
subclass of: trans-oriented base pair
comment: Forbidden is the pairing where G presents the Watson-Crick edge and A presents the sugar edge.
description: A family_6_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Watson-Crick edge of one base and the Sugar edge of the other base and in which the glycosidic bonds of the two nucleotides are oriented "trans" relative to each other.

family 7 base pair
type: Class
equivalent class: Class
  intersection of: cis-oriented base pair
  intersection of: Restriction
    on property: has part
    some values from: Class
      intersection of: nucleobase
      intersection of: Restriction
        on property: has boundary
        some values from: Class
  intersection of: Restriction
    on property: has direct part
    on class: ribonucleoside residue
    qualified cardinality: 2
subclass of: cis-oriented base pair
description: A family_7_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Hoogsteen edges of each base and in which the glycosidic bonds of the two nucleotides are oriented "cis" relative to each other.
comment: Forbidden pairings are: CC, CU, CA, UA, UC, UG, UU, AC, AU, AA and GU.

family 8 base pair
type: Class
equivalent class: Class
  intersection of: trans-oriented base pair
  intersection of: Restriction
    on property: has part
    some values from: Class
      intersection of: nucleobase
      intersection of: Restriction
        on property: has boundary
        some values from: Class
  intersection of: Restriction
    on property: has direct part
    on class: ribonucleoside residue
    qualified cardinality: 2
subclass of: trans-oriented base pair
description: A family_8_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Hoogsteen edges of each base and in which the glycosidic bonds of the two nucleotides are oriented "trans" relative to each other.

family 9 base pair
type: Class
equivalent class: Class
  intersection of: cis-oriented base pair
  intersection of: Restriction
    on property: has part
    some values from: Class
      intersection of: nucleobase
      intersection of: Restriction
        on property: has boundary
        some values from: Class
  intersection of: Restriction
    on property: has direct part
    on class: ribonucleoside residue
    qualified cardinality: 2
subclass of: cis-oriented base pair
description: A family_9_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Hoogsteen edge of one base and the Sugar edge of the other base and in which the glycosidic bonds of the two nucleotides are oriented "cis" relative to each other.

family 10 base pair
type: Class
equivalent class: Class
  intersection of: trans-oriented base pair
  intersection of: Restriction
    on property: has part
    some values from: Class
      intersection of: nucleobase
      intersection of: Restriction
        on property: has boundary
        some values from: Class
  intersection of: Restriction
    on property: has direct part
    on class: ribonucleoside residue
    qualified cardinality: 2
subclass of: trans-oriented base pair
description: A family_10_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Hoogsteen edge of one base and the Sugar edge of the other base and in which the glycosidic bonds of the two nucleotides are oriented "trans" relative to each other.

family 11 base pair
type: Class
equivalent class: Class
  intersection of: cis-oriented base pair
  intersection of: Restriction
    on property: has part
    some values from: Class
      intersection of: nucleobase
      intersection of: Restriction
        on property: has boundary
        some values from: Class
  intersection of: Restriction
    on property: has direct part
    on class: ribonucleoside residue
    qualified cardinality: 2
subclass of: cis-oriented base pair
description: A family_11_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Sugar edges of each base and in which the glycosidic bonds of the two nucleotides are oriented "cis" relative to each other.

family 12 base pair
type: Class
equivalent class: Class
  intersection of: trans-oriented base pair
  intersection of: Restriction
    on property: has part
    some values from: Class
      intersection of: nucleobase
      intersection of: Restriction
        on property: has boundary
        some values from: Class
  intersection of: Restriction
    on property: has direct part
    on class: ribonucleoside residue
    qualified cardinality: 2
subclass of: trans-oriented base pair
description: A family_12_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Sugar edges of each base and in which the glycosidic bonds of the two nucleotides are oriented "trans" relative to each other.
comment: Excluded are CA, CC, CU, CG, and UA, UC, UU, UG.

RNA suite
type: Class
subclass of: submolecule
subclass of: Restriction
  on property: part of
  some values from: ribonucleic acid
subclass of: Restriction
  on property: has quality
  some values from: backbone conformation

canonical RNA base pair
type: Class
equivalent class: Class
  intersection of: Class
    union of: Restriction
      on property: has part
      some values from: Class
        intersection of: cytosine nucleobase
        intersection of: Restriction
    union of: Restriction
      on property: has part
      some values from: Class
        intersection of: adenine nucleobase
        intersection of: Restriction
  intersection of: Restriction
    on property: has direct part
    on class: ribonucleoside residue
    qualified cardinality: 2
subclass of: cis-oriented base pair
description: An RNAO_base_pair which has cis-Watson--Crick pairing and where the participating bases are AU, CG, GC or UA.

nucleobase
type: Class
subclass of: submolecule
subclass of: Restriction
  on property: part of
  some values from: nucleoside residue
description: A nucleobase is an N-heterocyclic group that forms part of a nucleoside residue.

phosphate moiety
type: Class
subclass of: submolecule
description: A phosphate group consists of a phosphorus atom doubly-bonded to two oxygen atoms and singly-bonded to two oxygen atoms, both of which have a free valence. Unlike the phosphate group in ChEBI (CHEBI:32958), the RNAO phosphate group has two free valences.

ribonucleoside residue
type: Class
subclass of: nucleoside residue
subclass of: Restriction
  on property: has direct part
  some values from: ribose ring
subclass of: Class
  complement of: Restriction
    on property: has part
    some values from: phosphate moiety
description: A ribonucleoside consists of a nitrogen heterocycle (a nucleobase) covalently bonded to a ribose ring, with free valences at the 3prime oxgen and 5prime oxygen atoms on the ring.

ribonucleotide residue
type: Class
subclass of: nucleotide residue
description: A ribonucleotide residue consists of a nitrogen heterocyclic group covalently bonded to the 1prime position of a ribose ring and a phosphate group covalently bonded the 5' oxygen of the ribose ring. There are free valances at the 3'-oxygen of the ribose and on the phosphorus atom of the phosphate group where the ribonucleotide is connected to two other ribonucleotides in the chain.

ribose ring
type: Class
subclass of: furanose ring
description: A ribose ring is a furanose ring with free valences at the 4prime position (to bond to the nucleobase), and the 3prime and 5prime positions.

2prime hydroxyl group
type: Class
subclass of: submolecule
subclass of: Restriction
  on property: part of
  some values from: ribose ring

purine nucleobase
type: Class
subclass of: nucleobase
description: A purine nucleobase is a heterocyclic group consisting of a five-membered aromatic ring ortho,para-fused to a six-membered aromatic ring and where the atoms at the 1-, 3-, 7- and 9- positions are nitrogen atoms.

pyrimidine nucleobase
type: Class
subclass of: nucleobase
description: A pyrimidine nucleobase is a heterocyclic group consisting of a six-membered ring where the atoms at the 1- and 3-positions are nitrogen atoms.

cytosine nucleobase
type: Class
subclass of: pyrimidine nucleobase
description: A cytosine nucleobase is a pyrimidine that contains a 4-amino group and a 2-oxo group and has a free valence at the 1-position.

uracil nucleobase
type: Class
subclass of: pyrimidine nucleobase
description: A uracil nucleobase is a pyrimidine nucleobase that contains a 2-oxo group and a 4-oxo group and has a free valence at the 1-position.

adenine nucleobase
type: Class
subclass of: purine nucleobase
description: An adenine nucleobase is a purine nucleobase that contains a 6-amino group and a free valence at the 9-position.

guanine nucleobase
type: Class
subclass of: purine nucleobase
description: A guanine nucleobase is a purine nucleobase that contains a 2-amino group, a 6-oxo group and a free valence at the 9-position.

22 conformation
type: Class
subclass of: backbone conformation

23 conformation
type: Class
subclass of: backbone conformation

32 conformation
type: Class
subclass of: backbone conformation

purine ribonucleoside residue
type: Class
subclass of: ribonucleoside residue
disjoint with: pyrimidine ribonucleoside residue

33 conformation
type: Class
subclass of: backbone conformation

pyrimidine ribonucleoside residue
type: Class
subclass of: ribonucleoside residue

cytidine residue
type: Class
subclass of: pyrimidine ribonucleoside residue
disjoint with: uridine residue

uridine residue
type: Class
subclass of: pyrimidine ribonucleoside residue

adenosine residue
type: Class
subclass of: purine ribonucleoside residue
subclass of: Restriction
  on property: has part
  some values from: adenine nucleobase
disjoint with: guanosine residue

guanosine residue
type: Class
subclass of: purine ribonucleoside residue
subclass of: Restriction
  on property: has part
  some values from: guanine nucleobase

1a conformation
type: Class
subclass of: 33 conformation

1c conformation
type: Class
subclass of: 33 conformation

1e conformation
type: Class
subclass of: 33 conformation

1f conformation
type: Class
subclass of: 33 conformation

1g conformation
type: Class
subclass of: 33 conformation

1l conformation
type: Class
subclass of: 33 conformation

1m conformation
type: Class
subclass of: 33 conformation

3a conformation
type: Class
subclass of: 33 conformation

3d conformation
type: Class
subclass of: 33 conformation

5a conformation
type: Class
subclass of: 33 conformation

5d conformation
type: Class
subclass of: 33 conformation

5j conformation
type: Class
subclass of: 33 conformation

5n conformation
type: Class
subclass of: 33 conformation

7a conformation
type: Class
subclass of: 33 conformation

7d conformation
type: Class
subclass of: 33 conformation

9a conformation
type: Class
subclass of: 33 conformation

&a conformation
type: Class
subclass of: 33 conformation

1[ conformation
type: Class
subclass of: 32 conformation

1o conformation
type: Class
subclass of: 32 conformation

1t conformation
type: Class
subclass of: 32 conformation

3b conformation
type: Class
label: 1z conformation
subclass of: 32 conformation

5p conformation
type: Class
subclass of: 32 conformation

5q conformation
type: Class
subclass of: 32 conformation

5r conformation
type: Class
subclass of: 32 conformation

5z conformation
type: Class
subclass of: 32 conformation

7p conformation
type: Class
subclass of: 32 conformation

7r conformation
type: Class
subclass of: 32 conformation

1b conformation
type: Class
subclass of: 32 conformation

0a conformation
type: Class
subclass of: 23 conformation

0i conformation
type: Class
subclass of: 23 conformation

0k conformation
type: Class
subclass of: 23 conformation

2a conformation
type: Class
subclass of: 23 conformation

2g conformation
type: Class
subclass of: 23 conformation

2h conformation
type: Class
subclass of: 23 conformation

4a conformation
type: Class
subclass of: 23 conformation

4d conformation
type: Class
subclass of: 23 conformation

4g conformation
type: Class
subclass of: 23 conformation

4n conformation
type: Class
subclass of: 23 conformation

6d conformation
type: Class
subclass of: 23 conformation

6g conformation
type: Class
subclass of: 23 conformation

8d conformation
type: Class
subclass of: 23 conformation

6n conformation
type: Class
subclass of: 23 conformation

6j conformation
type: Class
subclass of: 23 conformation

0b conformation
type: Class
subclass of: 22 conformation

2[ conformation
type: Class
subclass of: 22 conformation

2o conformation
type: Class
subclass of: 22 conformation

2u conformation
type: Class
subclass of: 22 conformation

2z conformation
type: Class
subclass of: 22 conformation

4b conformation
type: Class
subclass of: 22 conformation

4p conformation
type: Class
subclass of: 22 conformation

4s conformation
type: Class
subclass of: 22 conformation

6p conformation
type: Class
subclass of: 22 conformation

nucleoside edge
type: Class
equivalent class: Class
  union of: Watson-Crick edge
  union of: Hoogsteen edge
  union of: sugar edge
subclass of: boundary
description: A nucleoside edge is either a Watson-Crick edge or a Hoogsteen edge or a sugar edge.

Watson-Crick edge
type: Class
subclass of: nucleoside edge
subclass of: Restriction
  on property: boundary of
  some values from: nucleobase
description: The Watson-Crick edge of a nucleobase is the preferred edge along which it undergoes hydrogen bonding with other nucleobases.

Hoogsteen edge
type: Class
subclass of: nucleoside edge
subclass of: Restriction
  on property: boundary of
  some values from: nucleobase
description: The Hoogsteen edge of a nucleobase is the edge of the nucleobase which is not adjacent to the 2prime-hydroxyl group on the ribose ring.

sugar edge
type: Class
subclass of: nucleoside edge
subclass of: Restriction
  on property: boundary of
  some values from: ribonucleoside residue
description: The sugar edge of a nucleoside consists of the edge of the nucleobase adjacent ot the 2prime-hydroxyl group on the ribose ring and the 2prime-hydroxyl group on the ribose ring.

paired region
type: Class
subclass of: collection of nucleotides residues
subclass of: Restriction
  on property: has proper part
  some values from: base pair
disjoint with: unpaired region
description: A collection of one or more adjacent nucleotide residues in which at least one residue is part of a base pair.

unpaired region
type: Class
subclass of: collection of nucleotides residues
subclass of: Class
  complement of: Restriction
    on property: has proper part
    some values from: base pair
description: A collection of one or more nucleotides that are not involved in base pairing.

unbroken stem
type: Class
subclass of: paired region
description: A paired region made up of two contiguous collections of nucleotides, in which each nucleotide forms a base pair.

terminal loop
type: Class
subclass of: collection of nucleotides residues
description: A contiguous sequence of nucleotide residues that directly links the two halves of an unbroken stem (but does not participate in the stem); this structure is also known as a "hairpin loop". Because a terminal loop may also participate in other inter-base interactions, (a) it is defined relative to a particular unbroken_stem, and (b) it is not implicitly defined as unpaired (or paired).

internal loop
type: Class
subclass of: collection of nucleotides residues
description: A collection of nucleotide residues that link two given unbroken_stems.
comment: this term encompasses the concepts of "bulge" and "mismatch" as well. Again, this term is defined relative to two particular unbroken_stems and does not imply unpairedness (or pairedness).

purine ribonucleotide
type: Class
subclass of: ribonucleotide residue

pyrimidine ribonucleotide
type: Class
subclass of: ribonucleotide residue

cytidylate residue
type: Class
subclass of: pyrimidine ribonucleotide
disjoint with: uridylate residue

uridylate residue
type: Class
subclass of: pyrimidine ribonucleotide

adenylate residue
type: Class
subclass of: purine ribonucleotide
disjoint with: guanylate residue

guanylate residue
type: Class
subclass of: purine ribonucleotide

stem junction
type: Class
subclass of: collection of nucleotides residues
description: A collection of nucleotide residues consisting of all and only the nucleotide regions that link more than two unbroken stems such that each region links exactly two unbroken stems. This term is defined relative to the particular unbroken_stems involved and, again, does not imply anything about the pairedness/unpairedness of the bases in this region. The degree of a junction is a property (e.g. 3-junction, 4-junction), so the different degrees do not get separate entries in the ontology.

strand end
type: Class
subclass of: collection of nucleotides residues
description: A sequence_region bounded at one end by the 5prime or 3prime end of the molecule, and at the other by an unbroken_stem.

collection of nucleotides residues
type: Class
subclass of: collection of biopolymer residues
subclass of: Restriction
  on property: has member
  all values from: nucleotide residue
subclass of: Restriction
  on property: part of
  some values from: nucleic acid
description: A collection of nucleotide residues is a part of a nucleic acid consisting of one or more nucleotides.

3prime end
type: Class
subclass of: terminal boundary of linear biopolymer

collection of material entities
type: Class
subclass of: MaterialEntity
subclass of: Restriction
  on property: has member
  some values from: MaterialEntity

5prime end
type: Class
subclass of: terminal boundary of linear biopolymer

conformation
type: Class
subclass of: Quality
source: http://goldbook.iupac.org/C01258.html
description: The spatial arrangement of the atoms in a molecule or molecular part affording distinction between stereoisomers which can be interconverted by rotations about formally single bonds.

base pair orientation
type: Class
subclass of: conformation
description: A conformation that inheres in an RNA base pair. It may be cis- or trans- depending on the orientations of the ribose rings relative to the edge-edge interaction of the nucleobases.
source: PERSON: Colin Batchelor, based on the Leontis-Westhof classification.

base pair cis-orientation
type: Class
subclass of: base pair orientation
disjoint with: base pair trans-orientation
source: PERSON: Colin Batchelor, based on the Leontis-Westhof classification.
description: A base pair conformation where the ribose rings are on the same side of a plane drawn through the middle of the edge-edge hydrogen bonds.

base pair trans-orientation
type: Class
subclass of: base pair orientation
source: PERSON: Colin Batchelor, based on the Leontis-Westhof classification.
description: A base pair conformation where the ribose rings are on opposite sides of a plane drawn through the middle of the edge-edge hydrogen bonds.

cis-oriented base pair
type: Class
equivalent class: Class
  intersection of: base pair
  intersection of: Restriction
    on property: has quality
    some values from: base pair cis-orientation
subclass of: base pair

trans-oriented base pair
type: Class
equivalent class: Class
  intersection of: base pair
  intersection of: Restriction
    on property: has quality
    some values from: base pair trans-orientation
subclass of: base pair

collection of atoms
type: Class
subclass of: collection of material entities
subclass of: Restriction
  on property: has member
  all values from: atom

covalent boundary
type: Class
subclass of: boundary

non-covalent boundary
type: Class
subclass of: boundary

nucleoside conformation
type: Class
subclass of: conformation
description: A conformation that inheres in an nucleoside based on the rotation of the nucleobase about the glycosidic torsion angle χ with the furanose.
source: PERSON: Michel Dumontier

syn nucleoside conformation
type: Class
subclass of: nucleoside conformation
disjoint with: anti nucleoside conformation
source: PERSON: Michel Dumontier
description: A syn nucleoside conformation is a nucleoside conformation characterized by the nucleobase being oriented towards the ribose due to rotation about the glycosidic torsion angle χ. From χ = 0°, where the plane of the base is aligned with the O4’-C1’ bond in a direction towards the O4’ atom, the syn conformation covers the remaining rotations of ±90°: χ = [-90°, 90°].

anti nucleoside conformation
type: Class
subclass of: nucleoside conformation
description: A anti nucleoside conformation is a nucleoside conformation characterized by the nucleobase being oriented away from the ribose due to rotation about the glycosidic torsion angle χ. From χ = 180°, where the plane of the base is aligned with the O4’-C1’ bond in a direction away from the O4’ atom, the anti conformation covers a rotations of ±90°: χ = [-180°, 90°].
source: PERSON: Michel Dumontier

envelope conformation
type: Class
subclass of: furan ring conformation
disjoint with: twist conformation
source: PERSON: Michel Dumontier
description: An envelope conformation is a furan ring conformation in which only one of the five fruan atoms (C1’, C2’, C3’, C4’ or O4’) is out of the plane formed by the four others.

twist conformation
type: Class
subclass of: furan ring conformation
source: PERSON: Michel Dumontier
description: An envelope conformation is a furan ring conformation in which two atoms are in opposite sides of the plane formed by the remaining three.

furan ring conformation
type: Class
subclass of: conformation
description: A furan ring conformation is a conformation that inheres in a furan ring and is characterized by the values of torsion angles: θ0-4.
source: PERSON: Michel Dumontier

C2prime-endo pucker
type: Class
subclass of: envelope conformation
description: C2prime-endo pucker (2E conformation) is an envelope conformation in which the C2prime atom is above the plane formed by the other 4 atoms.
source: PERSON: Michel Dumontier

C3prime-endo pucker
type: Class
subclass of: envelope conformation
description: C3prime-endo pucker (An 3E conformation) is an envelope conformation in which the C3prime atom is above the plane formed by the other 4 atoms.
source: PERSON: Michel Dumontier

C4prime-exo pucker
type: Class
subclass of: envelope conformation
source: PERSON: Michel Dumontier
description: C4prime-exo pucker (E4 conformation) is an envelope conformation in which the C4prime atom is below the plane formed by the other 4 atoms.

C3prime-endo - C4prime -exo pucker
type: Class
subclass of: twist conformation
disjoint with: C3prime-endo - C2prime -exo pucker
description: C3prime-endo - C4prime exo pucker (3E4 conformation) is a twist conformation in which the C3prime atom is above the plane and the C4prime atom is below the plane.
source: PERSON: Michel Dumontier

C3prime-endo - C2prime -exo pucker
type: Class
subclass of: twist conformation
description: C3prime-endo - C2prime exo pucker (3E2 conformation) is a twist conformation in which the C3prime atom is above the plane and the C2prime atom is below the plane.
source: PERSON: Michel Dumontier

base stack
type: Class
subclass of: MaterialEntity
subclass of: Restriction
  on property: has part
  some values from: Class
    intersection of: nucleobase face
    intersection of: Restriction
      on property: weakly interacting with
      some values from: nucleobase face
subclass of: Restriction
  on property: has quality
  some values from: base stack orientation
source: PERSON: Michel Dumontier
description: A base stack consists of a pair of nucleotides that interact by London dispersion inter-molecular interactions between their nucleobases such that one base is stacked on top of the other.

adjacent base stack
type: Class
subclass of: base stack
subclass of: Restriction
  on property: has quality
  some values from: base stack adjacent base orientation
description: An adjacent base stack is a base stack between a pair of sequence-adjacent nucleotides.
source: PERSON: Michel Dumontier

non-adjacent base stack
type: Class
subclass of: base stack
subclass of: Restriction
  on property: has quality
  some values from: base stack non-adjacent base orientation
source: PERSON: Michel Dumontier
description: A non-adjacent base stack is a base stack between a pair of non sequence-adjacent nucleotides.

base stack orientation
type: Class
subclass of: conformation
description: A base stack orientation is a conformation that inheres in a base stack by virtue of the orientation of the nucleobases relative to i) the alignment of base normals and ii) their sequence adjacency.
source: PERSON: Michel Dumontier

#a conformation
type: Class
subclass of: 23 conformation

backbone
type: Class
subclass of: submolecule

base stack straight orientation
type: Class
subclass of: base stack base-normal orientation
description: An base stack straight orientation is a base stack orientation in which the normals of both bases are aligned in the same direction.
source: PERSON: Michel Dumontier

base stack reverse orientation
type: Class
subclass of: base stack base-normal orientation
source: PERSON: Michel Dumontier
description: A base stack reverse orientation is a base stack orientation in which the normals of both bases are aligned in the opposite directions.

base stack base-normal orientation
type: Class
subclass of: base stack orientation
disjoint with: base stack sequence adjacency
description: A base stack base-normal orientation is a base stack orientation that depends on the relative orientation of the base normals.

molecule
type: Class
subclass of: MaterialEntity
subclass of: Class
  intersection of: mereologically maximal object
  intersection of: Restriction
    on property: covalently bonded sum of
    some values from: collection of atoms
comment: CHEBI:36357

base stack above orientation
type: Class
subclass of: base stack base-normal orientation
source: PERSON: Michel Dumontier
description: A base stack above orientation is a base stack orientation in which the second base (B) is in the same direction as the normal to the first base (A).

base stack below orientation
type: Class
subclass of: base stack base-normal orientation
description: A base stack below orientation is a base stack orientation in which the normal of the second base (B) is directed towards the first base (A).
source: PERSON: Michel Dumontier

base stack sequence adjacency
type: Class
subclass of: base stack orientation
source: PERSON: Michel Dumontier
description: A base stack sequence adjacency is a base stack orientation that depends on whether the stacked nucleobases are part of nucleotides that are sequence adjacent or not.

base stack adjacent base orientation
type: Class
subclass of: base stack sequence adjacency
disjoint with: base stack non-adjacent base orientation
source: PERSON: Michel Dumontier
description: A base stack adjacent orientation is a base stack orientation in which the stacked nucleobases are part of nucleotides that are sequence adjacent.

base stack non-adjacent base orientation
type: Class
subclass of: base stack sequence adjacency
description: A base stack non-adjacent orientation is a base stack orientation in which the stacked nucleobases are part of nucleotides that are not sequence adjacent.
source: PERSON: Michel Dumontier

furanose ring
type: Class
subclass of: submolecule
description: A furanose ring is a ring that consists of four carbon and one oxygen atom and has free valences at each carbon position.
source: PERSON: Michel Dumontier

upward base stack
type: Class
subclass of: base stack
subclass of: Restriction
  on property: has quality
  some values from: base stack above orientation
subclass of: Restriction
  on property: has quality
  some values from: base stack straight orientation
description: An upward base stack is a base stack that exhibits both an straight orientation and an above orientation.
source: PERSON: Michel Dumontier

downward base stack
type: Class
subclass of: base stack
subclass of: Restriction
  on property: has quality
  some values from: base stack below orientation
subclass of: Restriction
  on property: has quality
  some values from: base stack straight orientation
description: A downward base stack is a base stack that exhibits both an straight orientation and a below orientation.
source: PERSON: Michel Dumontier

inward base stack
type: Class
subclass of: base stack
subclass of: Restriction
  on property: has quality
  some values from: base stack straight orientation
subclass of: Restriction
  on property: has quality
  some values from: base stack above orientation
description: An inward base stack is a base stack that exhibits both a reverse orientation and an above orientation.
source: PERSON: Michel Dumontier

outward base stack
type: Class
subclass of: base stack
subclass of: Restriction
  on property: has quality
  some values from: base stack straight orientation
subclass of: Restriction
  on property: has quality
  some values from: base stack above orientation
description: An outward base stack is a base stack that exhibits both a reverse orientation and a below orientation.
source: PERSON: Michel Dumontier

purine Hoogsteen edge
type: Class
equivalent class: Class
  intersection of: Hoogsteen edge
  intersection of: Restriction
    on property: boundary of
    some values from: purine ribonucleoside residue

pyrimidine Hoogsteen edge
type: Class
equivalent class: Class
  intersection of: Hoogsteen edge
  intersection of: Restriction
    on property: boundary of
    some values from: pyrimidine ribonucleoside residue

purine Watson-Crick edge
type: Class
equivalent class: Class
  intersection of: Watson-Crick edge
  intersection of: Restriction
    on property: boundary of
    some values from: purine ribonucleoside residue

pyrimidine Watson-Crick edge
type: Class
equivalent class: Class
  intersection of: Watson-Crick edge
  intersection of: Restriction
    on property: boundary of
    some values from: pyrimidine ribonucleoside residue

purine sugar edge
type: Class
equivalent class: Class
  intersection of: sugar edge
  intersection of: Restriction
    on property: boundary of
    some values from: purine ribonucleoside residue
subclass of: sugar edge

pyrimidine sugar edge
type: Class
equivalent class: Class
  intersection of: sugar edge
  intersection of: Restriction
    on property: boundary of
    some values from: pyrimidine ribonucleoside residue
subclass of: sugar edge

submolecule
type: Class
subclass of: part of molecule
subclass of: Restriction
  on property: part of
  some values from: molecule
description: a submolecule is a part of a molecule that consists of covalently bonded sum of a collection of atoms.
comment: synonym:moiety

pyrimidine O4 atom
type: Class
subclass of: pyrimidine oxygen atom
subclass of: Restriction
  on property: part of
  some values from: pyrimidine nucleobase

purine C2 atom
type: Class
subclass of: purine carbon atom
subclass of: Restriction
  on property: part of
  some values from: purine nucleobase

pyrimidine N4 atom
type: Class
subclass of: pyrimidine nitrogen atom
subclass of: Restriction
  on property: part of
  some values from: pyrimidine nucleobase

purine N1 atom
type: Class
subclass of: purine nitrogen atom
subclass of: Restriction
  on property: part of
  some values from: purine nucleobase

purine N6 atom
type: Class
subclass of: purine nitrogen atom
subclass of: Restriction
  on property: part of
  some values from: purine nucleobase

pyrimidine O2 atom
type: Class
subclass of: pyrimidine oxygen atom

pyrimidine N3 atom
type: Class
subclass of: pyrimidine nitrogen atom
subclass of: Restriction
  on property: part of
  some values from: pyrimidine nucleobase

purine N3 atom
type: Class
subclass of: purine nitrogen atom
subclass of: Restriction
  on property: part of
  some values from: purine nucleobase

ribose O2prime atom
type: Class
subclass of: ribose oxygen atom
subclass of: Restriction
  on property: part of
  some values from: ribose ring

RNA backbone
type: Class
subclass of: backbone
subclass of: Restriction
  on property: part of
  some values from: ribonucleic acid

purine H2 atom
type: Class
subclass of: purine hydrogen atom
subclass of: Restriction
  on property: part of
  some values from: purine nucleobase

pyrimidine H3 atom
type: Class
subclass of: pyrimidine hydrogen atom
subclass of: Restriction
  on property: part of
  some values from: pyrimidine nucleobase

purine H8 atom
type: Class
subclass of: purine hydrogen atom
subclass of: Restriction
  on property: part of
  some values from: purine nucleobase

purine C8 atom
type: Class
subclass of: purine carbon atom
subclass of: Restriction
  on property: part of
  some values from: purine nucleobase

purine N7 atom
type: Class
subclass of: purine nitrogen atom
subclass of: Restriction
  on property: part of
  some values from: purine nucleobase

purine H62 atom
type: Class
subclass of: purine hydrogen atom
subclass of: Restriction
  on property: part of
  some values from: purine nucleobase

purine O6 atom
type: Class
subclass of: oxygen atom
subclass of: Restriction
  on property: part of
  some values from: purine nucleobase

pyrimidine H5 atom
type: Class
subclass of: pyrimidine hydrogen atom
subclass of: Restriction
  on property: part of
  some values from: pyrimidine nucleobase

pyrimidine C5 atom
type: Class
subclass of: pyrimidine carbon atom
subclass of: Restriction
  on property: part of
  some values from: pyrimidine nucleobase

pyrimidine C4 atom
type: Class
subclass of: pyrimidine carbon atom
subclass of: Restriction
  on property: part of
  some values from: pyrimidine nucleobase

pyrimidine C6 atom
type: Class
subclass of: pyrimidine carbon atom
subclass of: Restriction
  on property: part of
  some values from: pyrimidine nucleobase

purine H61 atom
type: Class
subclass of: purine hydrogen atom
subclass of: Restriction
  on property: part of
  some values from: purine nucleobase

part of molecule
type: Class
equivalent class: Restriction
  on property: proper part of
  some values from: molecule
subclass of: MaterialEntity
description: a part of molecule is some part of a molecule.

collection of biopolymer residues
type: Class
subclass of: collection of material entities

nucleobase face
type: Class
equivalent class: Class
  union of: 5prime face
  union of: 3prime face
subclass of: boundary

5prime face
type: Class
subclass of: nucleobase face

3prime face
type: Class
subclass of: nucleobase face

nucleoside residue
type: Class
subclass of: submolecule
subclass of: Restriction
  on property: has part
  some values from: nucleobase
subclass of: Restriction
  on property: has part
  some values from: furanose ring

nucleotide residue
type: Class
subclass of: submolecule
subclass of: Restriction
  on property: has part
  some values from: nucleoside residue

mereologically maximal object
type: Class
subclass of: MaterialEntity

linear RNA backbone
type: Class
subclass of: RNA backbone

mereological sum of collection
type: Class
subclass of: MaterialEntity

boundary
type: Class
equivalent class: Class
  union of: covalent boundary
  union of: non-covalent boundary
  union of: external boundary
subclass of: DependentContinuant
subclass of: Restriction
  on property: boundary of
  some values from: MaterialEntity
description: A boundary is a region at which connections can be formed.

backbone conformation
type: Class
subclass of: conformation

nucleic acid
type: Class
subclass of: molecule

external boundary
type: Class
subclass of: boundary

ribose O3prime atom
type: Class
subclass of: ribose oxygen atom
subclass of: Restriction
  on property: part of
  some values from: ribose ring

ribose C3prime atom
type: Class
subclass of: ribose carbon atom
subclass of: Restriction
  on property: part of
  some values from: ribose ring

terminal boundary of linear biopolymer
type: Class
subclass of: boundary

uracil O4 atom
type: Class
subclass of: pyrimidine O4 atom
subclass of: Restriction
  on property: part of
  some values from: uridine Hoogsteen edge
subclass of: Restriction
  on property: part of
  some values from: uridine Watson-Crick edge
subclass of: Restriction
  on property: part of
  some values from: uracil nucleobase

cytosine O2 atom
type: Class
subclass of: pyrimidine O2 atom
subclass of: Restriction
  on property: part of
  some values from: cytosine nucleobase
subclass of: Restriction
  on property: part of
  some values from: cytidine sugar edge
subclass of: Restriction
  on property: part of
  some values from: cytidine Watson-Crick edge

uracil O2 atom
type: Class
subclass of: pyrimidine O2 atom
subclass of: Restriction
  on property: part of
  some values from: uridine Watson-Crick edge
subclass of: Restriction
  on property: part of
  some values from: uridine sugar edge
subclass of: Restriction
  on property: part of
  some values from: uracil nucleobase

guanine O6 atom
type: Class
subclass of: purine O6 atom
subclass of: Restriction
  on property: part of
  some values from: guanine nucleobase
subclass of: Restriction
  on property: part of
  some values from: guanosine Watson-Crick edge
subclass of: Restriction
  on property: part of
  some values from: guanosine Hoogsteen edge

adenine C2 atom
type: Class
subclass of: purine C2 atom
subclass of: Restriction
  on property: part of
  some values from: adenosine sugar edge
subclass of: Restriction
  on property: part of
  some values from: adenosine Watson-Crick edge
subclass of: Restriction
  on property: part of
  some values from: adenine nucleobase

adenine C8 atom
type: Class
subclass of: purine C8 atom
subclass of: Restriction
  on property: part of
  some values from: adenine nucleobase
subclass of: Restriction
  on property: part of
  some values from: adenosine Hoogsteen edge

guanine C8 atom
type: Class
subclass of: purine C8 atom
subclass of: Restriction
  on property: part of
  some values from: guanine nucleobase
subclass of: Restriction
  on property: part of
  some values from: guanosine Hoogsteen edge

cytosine C5 atom
type: Class
subclass of: pyrimidine C5 atom
subclass of: Restriction
  on property: part of
  some values from: cytidine Hoogsteen edge
subclass of: Restriction
  on property: part of
  some values from: cytosine nucleobase

uracil C5 atom
type: Class
subclass of: pyrimidine C5 atom
subclass of: Restriction
  on property: part of
  some values from: uracil nucleobase
subclass of: Restriction
  on property: part of
  some values from: uridine Hoogsteen edge

cytosine C4 atom
type: Class
subclass of: pyrimidine C4 atom
subclass of: Restriction
  on property: part of
  some values from: cytosine nucleobase

uracil C4 atom
type: Class
subclass of: pyrimidine C4 atom
subclass of: Restriction
  on property: part of
  some values from: uracil nucleobase

uracil C6 atom
type: Class
subclass of: pyrimidine C6 atom
subclass of: Restriction
  on property: part of
  some values from: uridine Hoogsteen edge
subclass of: Restriction
  on property: part of
  some values from: uracil nucleobase

cytosine C6 atom
type: Class
subclass of: pyrimidine C6 atom
subclass of: Restriction
  on property: part of
  some values from: cytidine Hoogsteen edge
subclass of: Restriction
  on property: part of
  some values from: cytosine nucleobase

adenine H2 atom
type: Class
subclass of: purine H2 atom
subclass of: Restriction
  on property: part of
  some values from: adenosine Watson-Crick edge
subclass of: Restriction
  on property: part of
  some values from: adenine nucleobase
subclass of: Restriction
  on property: part of
  some values from: adenosine sugar edge

cytosine N4 atom
type: Class
subclass of: pyrimidine N4 atom
subclass of: Restriction
  on property: part of
  some values from: cytosine nucleobase
subclass of: Restriction
  on property: part of
  some values from: cytidine Watson-Crick edge
subclass of: Restriction
  on property: part of
  some values from: cytidine Hoogsteen edge

adenine N1 atom
type: Class
subclass of: purine N1 atom
subclass of: Restriction
  on property: part of
  some values from: adenosine Watson-Crick edge
subclass of: Restriction
  on property: part of
  some values from: adenine nucleobase

adenine N6 atom
type: Class
subclass of: purine N6 atom
subclass of: Restriction
  on property: part of
  some values from: adenosine Watson-Crick edge
subclass of: Restriction
  on property: part of
  some values from: adenine nucleobase
subclass of: Restriction
  on property: part of
  some values from: adenosine Hoogsteen edge

cytosine N3 atom
type: Class
subclass of: pyrimidine N3 atom
subclass of: Restriction
  on property: part of
  some values from: cytidine Watson-Crick edge
subclass of: Restriction
  on property: part of
  some values from: cytosine nucleobase

uracil N3 atom
type: Class
subclass of: pyrimidine N3 atom
subclass of: Restriction
  on property: part of
  some values from: uracil nucleobase
subclass of: Restriction
  on property: part of
  some values from: uridine Watson-Crick edge

adenine N3 atom
type: Class
subclass of: purine N3 atom
subclass of: Restriction
  on property: part of
  some values from: adenine nucleobase
subclass of: Restriction
  on property: part of
  some values from: adenosine sugar edge

guanine C2 atom
type: Class
subclass of: purine C2 atom
subclass of: Restriction
  on property: part of
  some values from: guanine nucleobase

uracil H3 atom
type: Class
subclass of: pyrimidine H3 atom
subclass of: Restriction
  on property: part of
  some values from: uracil nucleobase
subclass of: Restriction
  on property: part of
  some values from: uridine Watson-Crick edge

guanine H8 atom
type: Class
subclass of: purine H8 atom
subclass of: Restriction
  on property: part of
  some values from: guanosine Hoogsteen edge
subclass of: Restriction
  on property: part of
  some values from: guanine nucleobase

adenine H8 atom
type: Class
subclass of: purine H8 atom
subclass of: Restriction
  on property: part of
  some values from: adenosine Hoogsteen edge
subclass of: Restriction
  on property: part of
  some values from: adenine nucleobase

adenine H62 atom
type: Class
equivalent class: Restriction
  on property: part of
  some values from: adenosine Hoogsteen edge
subclass of: purine H62 atom
subclass of: Restriction
  on property: part of
  some values from: adenine nucleobase
subclass of: Restriction
  on property: part of
  some values from: adenosine Hoogsteen edge

cytosine H5 atom
type: Class
subclass of: pyrimidine H5 atom
subclass of: Restriction
  on property: part of
  some values from: cytidine Hoogsteen edge
subclass of: Restriction
  on property: part of
  some values from: cytosine nucleobase

uracil H5 atom
type: Class
subclass of: pyrimidine H5 atom
subclass of: Restriction
  on property: part of
  some values from: uracil nucleobase
subclass of: Restriction
  on property: part of
  some values from: uridine Hoogsteen edge

adenine H61 atom
type: Class
equivalent class: Restriction
  on property: part of
  some values from: adenosine Watson-Crick edge
subclass of: purine H61 atom
subclass of: Restriction
  on property: part of
  some values from: adenine nucleobase

guanine N1 atom
type: Class
subclass of: purine N1 atom
subclass of: Restriction
  on property: part of
  some values from: guanosine Watson-Crick edge
subclass of: Restriction
  on property: part of
  some values from: guanine nucleobase

guanine N3 atom
type: Class
subclass of: purine N3 atom
subclass of: Restriction
  on property: part of
  some values from: guanosine sugar edge
subclass of: Restriction
  on property: part of
  some values from: guanine nucleobase

adenine N7 atom
type: Class
subclass of: purine N7 atom
subclass of: Restriction
  on property: part of
  some values from: adenine nucleobase
subclass of: Restriction
  on property: part of
  some values from: adenosine Hoogsteen edge

guanine N7 atom
type: Class
subclass of: purine N7 atom
subclass of: Restriction
  on property: part of
  some values from: guanine nucleobase
subclass of: Restriction
  on property: part of
  some values from: guanosine Hoogsteen edge

pyrimidine H6 atom
type: Class
subclass of: pyrimidine hydrogen atom
subclass of: Restriction
  on property: part of
  some values from: pyrimidine nucleobase

cytosine H6 atom
type: Class
subclass of: pyrimidine H6 atom
subclass of: Restriction
  on property: part of
  some values from: cytidine Hoogsteen edge
subclass of: Restriction
  on property: part of
  some values from: cytosine nucleobase

uracil H6 atom
type: Class
subclass of: pyrimidine H6 atom
subclass of: Restriction
  on property: part of
  some values from: uracil nucleobase
subclass of: Restriction
  on property: part of
  some values from: uridine Hoogsteen edge

purine N9 atom
type: Class
subclass of: purine nitrogen atom
subclass of: Restriction
  on property: part of
  some values from: purine nucleobase

adenine N9 atom
type: Class
subclass of: purine N9 atom
subclass of: Restriction
  on property: part of
  some values from: adenine nucleobase

guanine N9 atom
type: Class
subclass of: purine N9 atom
subclass of: Restriction
  on property: part of
  some values from: guanine nucleobase

purine N2 atom
type: Class
subclass of: purine nitrogen atom
subclass of: Restriction
  on property: part of
  some values from: purine nucleobase

guanine N2 atom
type: Class
subclass of: purine N2 atom
subclass of: Restriction
  on property: part of
  some values from: guanine nucleobase
subclass of: Restriction
  on property: part of
  some values from: guanosine Watson-Crick edge
subclass of: Restriction
  on property: part of
  some values from: guanosine sugar edge

purine H21 atom
type: Class
subclass of: purine hydrogen atom
subclass of: Restriction
  on property: part of
  some values from: purine nucleobase

purine H22 atom
type: Class
subclass of: purine hydrogen atom
subclass of: Restriction
  on property: part of
  some values from: purine nucleobase

guanine H22 atom
type: Class
subclass of: purine H22 atom
subclass of: Restriction
  on property: part of
  some values from: guanosine sugar edge
subclass of: Restriction
  on property: part of
  some values from: guanine nucleobase

guanine H21 atom
type: Class
subclass of: purine H21 atom
subclass of: Restriction
  on property: part of
  some values from: guanine nucleobase
subclass of: Restriction
  on property: part of
  some values from: guanosine Watson-Crick edge

pyrimidine H41 atom
type: Class
subclass of: pyrimidine hydrogen atom
subclass of: Restriction
  on property: part of
  some values from: pyrimidine nucleobase

pyrimidine H42 atom
type: Class
subclass of: pyrimidine hydrogen atom
subclass of: Restriction
  on property: part of
  some values from: pyrimidine nucleobase

cytosine H42 atom
type: Class
subclass of: pyrimidine H42 atom
subclass of: Restriction
  on property: part of
  some values from: cytidine Hoogsteen edge
subclass of: Restriction
  on property: part of
  some values from: cytosine nucleobase

cytosine H41 atom
type: Class
subclass of: pyrimidine H41 atom
subclass of: Restriction
  on property: part of
  some values from: cytidine Watson-Crick edge
subclass of: Restriction
  on property: part of
  some values from: cytosine nucleobase

ribose O4prime atom
type: Class
subclass of: ribose oxygen atom
subclass of: Restriction
  on property: part of
  some values from: ribose ring

ribose O5prime atom
type: Class
subclass of: ribose oxygen atom
subclass of: Restriction
  on property: part of
  some values from: ribose ring

ribose C1prime atom
type: Class
subclass of: ribose carbon atom
subclass of: Restriction
  on property: part of
  some values from: ribose ring

ribose C2prime atom
type: Class
subclass of: ribose carbon atom
subclass of: Restriction
  on property: part of
  some values from: ribose ring

ribose C4prime atom
type: Class
subclass of: ribose carbon atom
subclass of: Restriction
  on property: part of
  some values from: ribose ring

ribose C5prime atom
type: Class
subclass of: ribose carbon atom
subclass of: Restriction
  on property: part of
  some values from: ribose ring

ribose H1prime atom
type: Class
equivalent class: Restriction
  on property: covalently bonded to
  some values from: ribose C1prime atom
subclass of: ribose hydrogen atom
subclass of: Restriction
  on property: part of
  some values from: ribose ring

ribose H2prime atom
type: Class
equivalent class: Restriction
  on property: covalently bonded to
  some values from: ribose C2prime atom
subclass of: ribose hydrogen atom
subclass of: Restriction
  on property: part of
  some values from: ribose ring

ribose H3prime atom
type: Class
equivalent class: Restriction
  on property: covalently bonded to
  some values from: ribose C3prime atom
subclass of: ribose hydrogen atom
subclass of: Restriction
  on property: part of
  some values from: ribose ring

ribose H4prime atom
type: Class
equivalent class: Restriction
  on property: covalently bonded to
  some values from: ribose C4prime atom
subclass of: ribose hydrogen atom
subclass of: Restriction
  on property: part of
  some values from: ribose ring

ribose H51prime atom
type: Class
equivalent class: Restriction
  on property: covalently bonded to
  some values from: ribose C5prime atom
subclass of: ribose hydrogen atom
subclass of: Restriction
  on property: part of
  some values from: ribose ring

ribose H52prime atom
type: Class
equivalent class: Restriction
  on property: covalently bonded to
  some values from: ribose C5prime atom
subclass of: ribose hydrogen atom
subclass of: Restriction
  on property: part of
  some values from: ribose ring

ribose OH2prime atom
type: Class
equivalent class: Restriction
  on property: covalently bonded to
  some values from: ribose O2prime atom
subclass of: ribose hydrogen atom
subclass of: Restriction
  on property: part of
  some values from: ribose ring

ribose OH3prime atom
type: Class
equivalent class: Restriction
  on property: covalently bonded to
  some values from: ribose O3prime atom
subclass of: ribose hydrogen atom
subclass of: Restriction
  on property: part of
  some values from: ribose ring

ribose OH5prime atom
type: Class
equivalent class: Restriction
  on property: covalently bonded to
  some values from: ribose O5prime atom
subclass of: ribose hydrogen atom
subclass of: Restriction
  on property: part of
  some values from: ribose ring

phosphate moiety O1P atom
type: Class
subclass of: phosphate moiety oxygen atom
subclass of: Restriction
  on property: part of
  some values from: phosphate moiety

phosphate moiety O2P atom
type: Class
subclass of: phosphate moiety oxygen atom
subclass of: Restriction
  on property: part of
  some values from: phosphate moiety

phosphate moiety phosphate atom
type: Class
subclass of: phosphorous atom
subclass of: Restriction
  on property: part of
  some values from: phosphate moiety

adenosine Watson-Crick edge
type: Class
equivalent class: Class
  intersection of: purine Watson-Crick edge
  intersection of: Restriction
    on property: boundary of
    some values from: adenosine residue
subclass of: purine Watson-Crick edge

guanosine Watson-Crick edge
type: Class
equivalent class: Class
  intersection of: purine Watson-Crick edge
  intersection of: Restriction
    on property: boundary of
    some values from: guanosine residue
subclass of: purine Watson-Crick edge

cytidine Watson-Crick edge
type: Class
equivalent class: Class
  intersection of: pyrimidine Watson-Crick edge
  intersection of: Restriction
    on property: boundary of
    some values from: cytidine residue
subclass of: pyrimidine Watson-Crick edge
subclass of: Restriction
  on property: part of
  some values from: cytosine nucleobase

uridine Watson-Crick edge
type: Class
equivalent class: Class
  intersection of: pyrimidine Watson-Crick edge
  intersection of: Restriction
    on property: boundary of
    some values from: uridine residue
subclass of: pyrimidine Watson-Crick edge
subclass of: Restriction
  on property: part of
  some values from: uracil nucleobase

adenine nucleobase functional derivative
type: Class
subclass of: purine nucleobase functional derivative

guanine nucleobase functional derivative
type: Class
subclass of: purine nucleobase functional derivative

cytosine nucleobase functional derivative
type: Class
subclass of: pyrimidine nucleobase functional derivative

uracil nucleobase functional derivative
type: Class
subclass of: pyrimidine nucleobase functional derivative

adenosine Hoogsteen edge
type: Class
equivalent class: Class
  intersection of: purine Hoogsteen edge
  intersection of: Restriction
    on property: boundary of
    some values from: adenosine residue
subclass of: purine Hoogsteen edge

guanosine Hoogsteen edge
type: Class
equivalent class: Class
  intersection of: purine Hoogsteen edge
  intersection of: Restriction
    on property: boundary of
    some values from: guanosine residue
subclass of: purine Hoogsteen edge

cytidine Hoogsteen edge
type: Class
equivalent class: Class
  intersection of: pyrimidine Hoogsteen edge
  intersection of: Restriction
    on property: boundary of
    some values from: cytidine residue
subclass of: pyrimidine Hoogsteen edge

uridine Hoogsteen edge
type: Class
equivalent class: Class
  intersection of: pyrimidine Hoogsteen edge
  intersection of: Restriction
    on property: boundary of
    some values from: uridine residue
subclass of: pyrimidine Hoogsteen edge

adenosine sugar edge
type: Class
equivalent class: Class
  intersection of: purine sugar edge
  intersection of: Restriction
    on property: boundary of
    some values from: adenosine residue
subclass of: purine sugar edge

guanosine sugar edge
type: Class
equivalent class: Class
  intersection of: purine sugar edge
  intersection of: Restriction
    on property: boundary of
    some values from: guanosine residue
subclass of: purine sugar edge

cytidine sugar edge
type: Class
equivalent class: Class
  intersection of: pyrimidine sugar edge
  intersection of: Restriction
    on property: boundary of
    some values from: cytidine residue
subclass of: pyrimidine sugar edge

uridine sugar edge
type: Class
equivalent class: Class
  intersection of: pyrimidine sugar edge
  intersection of: Restriction
    on property: boundary of
    some values from: uridine residue
subclass of: pyrimidine sugar edge

purine C6 atom
type: Class
subclass of: purine carbon atom
subclass of: Restriction
  on property: part of
  some values from: purine nucleobase

guanine C6 atom
type: Class
subclass of: purine C6 atom
subclass of: Restriction
  on property: part of
  some values from: guanine nucleobase

adenine C6 atom
type: Class
subclass of: purine C6 atom
subclass of: Restriction
  on property: part of
  some values from: adenine nucleobase

purine carbon atom
type: Class
subclass of: carbon atom
subclass of: Restriction
  on property: part of
  some values from: purine nucleobase

ribose carbon atom
type: Class
subclass of: carbon atom
subclass of: Restriction
  on property: part of
  some values from: ribose ring

imidazopurine carbon atom
type: Class
subclass of: carbon atom

pyrimidine carbon atom
type: Class
subclass of: carbon atom
subclass of: Restriction
  on property: part of
  some values from: pyrimidine nucleobase

pyrimidine C2 atom
type: Class
subclass of: pyrimidine carbon atom
subclass of: Restriction
  on property: part of
  some values from: pyrimidine nucleobase

cytosine C2 atom
type: Class
subclass of: pyrimidine C2 atom
subclass of: Restriction
  on property: part of
  some values from: pyrimidine nucleobase

uracil C2 atom
type: Class
subclass of: pyrimidine C2 atom
subclass of: Restriction
  on property: part of
  some values from: pyrimidine nucleobase

purine hydrogen atom
type: Class
subclass of: hydrogen atom
subclass of: Restriction
  on property: part of
  some values from: purine nucleobase

pyrimidine hydrogen atom
type: Class
subclass of: hydrogen atom

phosphate moiety oxygen atom
type: Class
subclass of: oxygen atom
subclass of: Restriction
  on property: part of
  some values from: phosphate moiety

ribose oxygen atom
type: Class
equivalent class: Restriction
  on property: part of
  some values from: ribose ring
subclass of: oxygen atom

pyrimidine oxygen atom
type: Class
subclass of: oxygen atom

purine nitrogen atom
type: Class
subclass of: nitrogen atom
subclass of: Restriction
  on property: part of
  some values from: purine nucleobase

pyrimidine nitrogen atom
type: Class
subclass of: nitrogen atom
subclass of: Restriction
  on property: part of
  some values from: pyrimidine nucleobase

ribose hydrogen atom
type: Class
equivalent class: Restriction
  on property: part of
  some values from: ribose ring
subclass of: hydrogen atom

purine H1 atom
type: Class
subclass of: purine hydrogen atom

guanine H1 atom
type: Class
subclass of: purine H1 atom
subclass of: Restriction
  on property: part of
  some values from: guanosine Watson-Crick edge
subclass of: Restriction
  on property: part of
  some values from: guanine nucleobase

cytidine ribose O 2prime atom
type: Class
subclass of: ribose O2prime atom
subclass of: Restriction
  on property: part of
  some values from: cytidine residue
subclass of: Restriction
  on property: part of
  some values from: cytidine sugar edge

uridine ribose O 2prime atom
type: Class
subclass of: ribose O2prime atom
subclass of: Restriction
  on property: part of
  some values from: uridine sugar edge
subclass of: Restriction
  on property: part of
  some values from: uridine residue

pyrimidine N1 atom
type: Class
subclass of: pyrimidine nitrogen atom
subclass of: Restriction
  on property: part of
  some values from: pyrimidine nucleobase

adenosine ribonucleoside residue functional derivative
type: Class
subclass of: purine ribonucleoside residue functional derivative

guanosine ribonucleoside residue functional derivative
type: Class
subclass of: purine ribonucleoside residue functional derivative

cytidine ribonucleoside residue functional derivative
type: Class
subclass of: pyrimidine ribonucleoside residue functional derivative

uridine ribonucleoside residue functional derivative
type: Class
subclass of: pyrimidine ribonucleoside residue functional derivative

adenylate residue functional derivative
type: Class
subclass of: purine ribonucleotide functional derivative

guanylate residue functional derivative
type: Class
subclass of: purine ribonucleotide functional derivative

cytidylate residue functional derivative
type: Class
subclass of: pyrimidine ribonucleotide functional derivative

uridylate residue functional derivative
type: Class
subclass of: pyrimidine ribonucleotide functional derivative

purine nucleobase functional derivative
type: Class
subclass of: purine nucleobase

pyrimidine nucleobase functional derivative
type: Class
subclass of: pyrimidine nucleobase

purine ribonucleoside residue functional derivative
type: Class
subclass of: purine ribonucleoside residue

pyrimidine ribonucleoside residue functional derivative
type: Class
subclass of: pyrimidine ribonucleoside residue

purine ribonucleotide functional derivative
type: Class
subclass of: purine ribonucleotide

pyrimidine ribonucleotide functional derivative
type: Class
subclass of: pyrimidine ribonucleotide

ribose ring functional derivative
type: Class
equivalent class: Class
  intersection of: ribose ring functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: phosphate group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: ribose ring

phosphate moiety functional derivative
type: Class
subclass of: phosphate moiety

5prime cap structure
type: Class
subclass of: submolecule
subclass of: Restriction
  on property: has boundary
  some values from: 5prime end

N6-methyladenine nucleobase
type: Class
equivalent class: Class
  intersection of: adenine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: purine N6 atom
    qualified cardinality: 1
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase

2prime-O-methylribose ring
type: Class
equivalent class: Class
  intersection of: ribose ring functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: ribose C2prime atom
    qualified cardinality: 1
subclass of: ribose ring functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: ribose ring

N6-methyladenylate residue
type: Class
equivalent class: Class
  intersection of: adenylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N6-methyladenosine residue
    qualified cardinality: 1
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue
creator: Kristian Rother

inosylate residue
type: Class
equivalent class: Class
  intersection of: adenylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: inosine residue
    qualified cardinality: 1
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue
creator: Kristian Rother

dihydrouridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: dihydrouridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
creator: Iga Korneta

2prime-O-methyluridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methyluridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue
creator: Iga Korneta

2prime-O-methyladenosine residue
type: Class
equivalent class: Class
  intersection of: adenosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylribose ring
    qualified cardinality: 1
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue

2prime-O-methyladenylate residue
type: Class
equivalent class: Class
  intersection of: adenylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methyladenosine residue
    qualified cardinality: 1
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue
creator: Iga Korneta

1-methyladenine nucleobase
type: Class
equivalent class: Class
  intersection of: adenine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: purine N1 atom
    qualified cardinality: 1
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase

1-methyladenylate residue
type: Class
equivalent class: Class
  intersection of: adenylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 1-methyladenosine residue
    qualified cardinality: 1
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue
date: 14/06/2010
creator: Iga Korneta

2-methyladenine nucleobase
type: Class
equivalent class: Class
  intersection of: adenine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: purine C2 atom
    qualified cardinality: 1
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase
creator: Iga Korneta

2-methyladenylate residue
type: Class
equivalent class: Class
  intersection of: adenylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2-methyladenosine residue
    qualified cardinality: 1
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue

N6,N6-dimethyladenine nucleobase
type: Class
equivalent class: Class
  intersection of: adenine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: purine N6 atom
    qualified cardinality: 2
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase

N6,N6-dimethyladenylate residue
type: Class
equivalent class: Class
  intersection of: adenylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N6,N6-dimethyladenosine residue
    qualified cardinality: 1
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue

1,2prime-O-dimethyladenosine residue
type: Class
equivalent class: Class
  intersection of: adenosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylribose ring
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: 1-methyladenine nucleobase
    qualified cardinality: 1
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue

1,2prime-O-methyladenylate residue
type: Class
equivalent class: Class
  intersection of: adenylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 1,2prime-O-dimethyladenosine residue
    qualified cardinality: 1
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue

N6,2prime-O-dimethyladenosine residue
type: Class
equivalent class: Class
  intersection of: adenosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N6-methyladenine nucleobase
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylribose ring
    qualified cardinality: 1
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue

N6,2prime-O-dimethyladenylate residue
type: Class
equivalent class: Class
  intersection of: adenylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N6,2prime-O-dimethyladenosine residue
    qualified cardinality: 1
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue

N6,N6,2prime-O-trimethyladenosine residue
type: Class
equivalent class: Class
  intersection of: adenosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylribose ring
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: N6,N6-dimethyladenine nucleobase
    qualified cardinality: 1
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue

N6,N6,2prime-O-trimethyladenylate residue
type: Class
equivalent class: Class
  intersection of: adenylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N6,N6,2prime-O-trimethyladenosine residue
    qualified cardinality: 1
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue

1-methylhypoxanthine nucleobase
type: Class
equivalent class: Class
  intersection of: adenine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: purine N1 atom
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: oxo group
      intersection of: Restriction
        on property: covalently connected to
        some values from: purine C6 atom
    qualified cardinality: 1
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase

1-methylinosylate residue
type: Class
equivalent class: Class
  intersection of: adenylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 1-methylinosine residue
    qualified cardinality: 1
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue

2prime-O-methylinosine residue
type: Class
equivalent class: Class
  intersection of: adenosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: hypoxanthine nucleobase
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylribose ring
    qualified cardinality: 1
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue

2prime-O-methylinosylate residue
type: Class
equivalent class: Class
  intersection of: adenylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylinosine residue
    qualified cardinality: 1
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue

1,2prime-O-dimethylinosylate residue
type: Class
equivalent class: Class
  intersection of: adenylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 1,2prime-O-dimethylinosine residue
    qualified cardinality: 1
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue

1,2prime-O-dimethylinosine residue
type: Class
equivalent class: Class
  intersection of: adenosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylribose ring
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: 1-methylhypoxanthine nucleobase
    qualified cardinality: 1
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue

2prime-O-methylcytidylate residue
type: Class
equivalent class: Class
  intersection of: cytidylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylcytidine residue
    qualified cardinality: 1
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue

3-methylcytosine nucleobase
type: Class
equivalent class: Class
  intersection of: cytosine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine N3 atom
    qualified cardinality: 1
subclass of: cytosine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytosine nucleobase

3-methylcytidylate residue
type: Class
equivalent class: Class
  intersection of: cytidylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 3-methylcytidine residue
    qualified cardinality: 1
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue

N4-methylcytosine nucleobase
type: Class
equivalent class: Class
  intersection of: cytosine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine N4 atom
    qualified cardinality: 1
subclass of: cytosine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytosine nucleobase

N4-methylcytidine residue
type: Class
equivalent class: Class
  intersection of: cytidine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N4-methylcytosine nucleobase
    qualified cardinality: 1
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue

N4-methylcytidylate residue
type: Class
equivalent class: Class
  intersection of: cytidylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N4-methylcytidine residue
    qualified cardinality: 1
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue

5-methylcytosine nucleobase
type: Class
equivalent class: Class
  intersection of: cytosine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C5 atom
    qualified cardinality: 1
subclass of: cytosine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytosine nucleobase

5-methylcytidylate residue
type: Class
equivalent class: Class
  intersection of: cytidylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-methylcytidine residue
    qualified cardinality: 1
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue

N4,2prime-O-dimethylcytidine residue
type: Class
equivalent class: Class
  intersection of: cytidine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylribose ring
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: N4-methylcytosine nucleobase
    qualified cardinality: 1
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue

N4,2prime-O-dimethylcytidylate residue
type: Class
equivalent class: Class
  intersection of: cytidylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N4,2prime-O-dimethylcytidine residue
    qualified cardinality: 1
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue

N4,N4-dimethylcytosine nucleobase
type: Class
equivalent class: Class
  intersection of: cytosine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine N4 atom
    qualified cardinality: 2
subclass of: cytosine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytosine nucleobase

N4,N4-dimethylcytidine residue
type: Class
equivalent class: Class
  intersection of: cytidine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N4,N4-dimethylcytosine nucleobase
    qualified cardinality: 1
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue

N4,N4-dimethylcytidylate residue
type: Class
equivalent class: Class
  intersection of: cytidylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N4,N4-dimethylcytidine residue
    qualified cardinality: 1
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue

N4,N4,2prime-O-trimethylcytidine residue
type: Class
equivalent class: Class
  intersection of: cytidine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylribose ring
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: N4,N4-dimethylcytosine nucleobase
    qualified cardinality: 1
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue

N4,N4,2prime-O-trimethylcytidylate residue
type: Class
equivalent class: Class
  intersection of: cytidylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N4,N4,2prime-O-trimethylcytidine residue
    qualified cardinality: 1
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue

5,2prime-O-dimethylcytidine residue
type: Class
equivalent class: Class
  intersection of: cytidine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylribose ring
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: 5-methylcytosine nucleobase
    qualified cardinality: 1
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue

5,2prime-O-dimethylcytidylate residue
type: Class
equivalent class: Class
  intersection of: cytidylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5,2prime-O-dimethylcytidine residue
    qualified cardinality: 1
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue

2prime-O-methylguanylate residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylguanosine residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

1-methylguanine nucleobase
type: Class
equivalent class: Class
  intersection of: guanine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: purine N1 atom
    qualified cardinality: 1
subclass of: guanine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanine nucleobase

1-methylguanylate residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 1-methylguanosine residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

N2-methylguanine nucleobase
type: Class
equivalent class: Class
  intersection of: guanine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: purine N2 atom
    qualified cardinality: 1
subclass of: guanine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanine nucleobase

N2-methylguanylate residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N2-methylguanosine residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

N2,N2-dimethylguanine nucleobase
type: Class
equivalent class: Class
  intersection of: guanine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: purine N2 atom
    qualified cardinality: 2
subclass of: guanine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanine nucleobase

N2,N2-dimethylguanylate residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N2,N2-dimethylguanosine residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

N2,N2,2prime-O-trimethylguanosine residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylribose ring
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: N2,N2-dimethylguanine nucleobase
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

N2,N2,2prime-O-trimethylguanylate residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N2,N2,2prime-O-trimethylguanosine residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

7-methylguanine nucleobase
type: Class
equivalent class: Class
  intersection of: guanine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: purine N7 atom
    qualified cardinality: 1
subclass of: guanine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanine nucleobase

7-methylguanylate residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 7-methylguanosine residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

N2,7-dimethylguanine nucleobase
type: Class
equivalent class: Class
  intersection of: guanine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: purine N7 atom
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: purine N2 atom
    qualified cardinality: 1
subclass of: guanine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanine nucleobase

N2,7-dimethylguanylate residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N2,7-dimethylguanosine residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

N2,N2,7-trimethylguanosine residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N2,N2,7-trimethylguanine nucleobase
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

N2,N2,7-trimethylguanine nucleobase
type: Class
equivalent class: Class
  intersection of: guanine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: purine N7 atom
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: purine N2 atom
    qualified cardinality: 2
subclass of: guanine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanine nucleobase

N2,N2,7-trimethylguanylate residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N2,N2,7-trimethylguanosine residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

1,2prime-O-dimethylguanosine residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylribose ring
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: 1-methylguanine nucleobase
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

1,2prime-O-methylguanylate residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 1,2prime-O-dimethylguanosine residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

N2,2prime-O-dimethylguanosine residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylribose ring
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: N2-methylguanine nucleobase
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

N2,2prime-O-methylguanylate residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N2,2prime-O-dimethylguanosine residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

3-methyluracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine N3 atom
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

3-methyluridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 3-methyluracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

3-methyluridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 3-methyluridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-methyluracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C5 atom
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

5-methyluridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-methyluracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-methyluridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 3-methyluridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

3,2prime-O-dimethyluridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylribose ring
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: 3-methyluracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

3,2prime-O-dimethyluridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 3,2prime-O-dimethyluridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5,2prime-O-dimethyluridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylribose ring
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: 5-methyluracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5,2prime-O-dimethyluridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5,2prime-O-dimethyluridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

2-methylthio-N6-methyladenine nucleobase
type: Class
equivalent class: Class
  intersection of: adenine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: purine N6 atom
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase

2-methylthio-N6-methyladenosine residue
type: Class
equivalent class: Class
  intersection of: adenosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2-methylthio-N6-methyladenine nucleobase
    qualified cardinality: 1
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue

2-methylthio-N6-methyladenylate residue
type: Class
equivalent class: Class
  intersection of: adenylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2-methylthio-N6-methyladenosine residue
    qualified cardinality: 1
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue

N6-acetyladenine nucleobase
type: Class
equivalent class: Class
  intersection of: adenine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: acetyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: purine N6 atom
    qualified cardinality: 1
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase

N6-acetyladenosine residue
type: Class
equivalent class: Class
  intersection of: adenosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N6-acetyladenine nucleobase
    qualified cardinality: 1
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue

N6-acetyladenylate residue
type: Class
equivalent class: Class
  intersection of: adenylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N6-acetyladenosine residue
    qualified cardinality: 1
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue

2-thiocytosine nucleobase
type: Class
equivalent class: Class
  intersection of: cytosine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: sulfur atom
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C2 atom
    qualified cardinality: 1
subclass of: cytosine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytosine nucleobase

2-thiocytidylate residue
type: Class
equivalent class: Class
  intersection of: cytidylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2-thiocytidine residue
    qualified cardinality: 1
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue

N4-acetylcytosine nucleobase
type: Class
equivalent class: Class
  intersection of: cytosine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: acetyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine N4 atom
    qualified cardinality: 1
subclass of: cytosine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytosine nucleobase

N4-acetylcytidylate residue
type: Class
equivalent class: Class
  intersection of: cytidylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N4-acetylcytidine residue
    qualified cardinality: 1
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue

N4-acetyl-2prime-O-methylcytidine residue
type: Class
equivalent class: Class
  intersection of: cytidine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylribose ring
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: N4-acetylcytosine nucleobase
    qualified cardinality: 1
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue

N4-acetyl-2prime-O-methylcytidylate residue
type: Class
equivalent class: Class
  intersection of: cytidylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N4-acetyl-2prime-O-methylcytidine residue
    qualified cardinality: 1
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue

5-formylcytosine nucleobase
type: Class
equivalent class: Class
  intersection of: cytosine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: formyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C5 atom
    qualified cardinality: 1
subclass of: cytosine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytosine nucleobase

5-formylcytidine residue
type: Class
equivalent class: Class
  intersection of: cytidine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-formylcytosine nucleobase
    qualified cardinality: 1
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue

5-formylcytidylate residue
type: Class
equivalent class: Class
  intersection of: cytidylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-formylcytidine residue
    qualified cardinality: 1
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue

5-formyl-2prime-O-methylcytidine residue
type: Class
equivalent class: Class
  intersection of: cytidine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylribose ring
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: 5-formylcytosine nucleobase
    qualified cardinality: 1
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue

5-formyl-2prime-O-methylcytidylate residue
type: Class
equivalent class: Class
  intersection of: cytidylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-formyl-2prime-O-methylcytidine residue
    qualified cardinality: 1
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue

2-thiouracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: sulfur atom
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C2 atom
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

2-thiouridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2-thiouracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

2-thiouridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    some values from: 2-thiouridine residue
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

4-thiouracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: sulfur atom
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C4 atom
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

4-thiouridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    some values from: 4-thiouridine residue
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

2-selenouracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: selenium atom
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C2 atom
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

2-selenouridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2-selenouracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

2-selenouridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    some values from: 2-selenouridine residue
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

2-thio-2prime-O-methyluridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylribose ring
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: 2-thiouracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

2-thio-2prime-O-methyluridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    some values from: 2-thio-2prime-O-methyluridine residue
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-methyl-2-thiouracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C5 atom
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: sulfur atom
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C2 atom
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

5-methyl-2-thiouridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-methyl-2-thiouridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-formyluracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: formyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C5 atom
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

5-formyluridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-formyluracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-formyluridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-formyluridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-formyl-2prime-O-methyluridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylribose ring
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: 5-formyluracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-formyl-2prime-O-methyluridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-formyl-2prime-O-methyluridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-formyl-2-thiouridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-formyl-2-thiouracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-formyl-2-thiouracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: formyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C5 atom
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: sulfur atom
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C2 atom
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

5-formyl-2-thiouridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-formyl-2-thiouridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-formyl-2-selenouracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: formyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C5 atom
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: selenium atom
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C2 atom
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

5-formyl-2-selenouridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-formyl-2-selenouracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-formyl-2-selenouridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-formyl-2-selenouridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-methyl-5,6-dihydrouracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C5 atom
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: hydrogen atom
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C6 atom
    qualified cardinality: 2
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

5-methyldihydrouridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-methyl-5,6-dihydrouracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-methyldihydrouridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-methyldihydrouridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-hydroxymethylcytosine nucleobase
type: Class
equivalent class: Class
  intersection of: cytosine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: hydroxymethyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C5 atom
    qualified cardinality: 1
subclass of: cytosine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytosine nucleobase

5-hydroxymethylcytidine residue
type: Class
equivalent class: Class
  intersection of: cytidine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-hydroxymethylcytosine nucleobase
    qualified cardinality: 1
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue

5-hydroxymethylcytidylate residue
type: Class
equivalent class: Class
  intersection of: cytidylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-hydroxymethylcytidine residue
    qualified cardinality: 1
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue

5-hydroxyuracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: hydroxy group
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C5 atom
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

5-hydroxyuridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-hydroxyuracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-hydroxyuridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-hydroxyuridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-methoxyuracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methoxy group
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C5 atom
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

5-methoxyuridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-methoxyuridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-carboxymethyluracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: carboxymethyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C5 atom
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

5-carboxymethyluridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-carboxymethyluracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-carboxymethyluridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-carboxymethyluridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-carboxymethyl-2-thiouracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: carboxymethyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C5 atom
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: sulfur atom
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C2 atom
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

5-carboxymethyl-2-thiouridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-carboxymethyl-2-thiouracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-carboxymethyl-2-thiouridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-carboxymethyl-2-thiouridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-carboxymethylaminomethyluracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: carboxymethyl group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

5-carboxymethylaminomethyluridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-carboxymethylaminomethyluracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-carboxymethylaminomethyluridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-carboxymethylaminomethyluridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-carboxymethylaminomethyl-2prime-O-methyluridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylribose ring
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: 5-carboxymethylaminomethyluracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-carboxymethylaminomethyl-2prime-O-methyluridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-carboxymethylaminomethyl-2prime-O-methyluridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-carboxymethylaminomethyl-2-thiouracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: carboxymethyl group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: sulfur atom
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C2 atom
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

5-carboxymethylaminomethyl-2-thiouridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-carboxymethylaminomethyl-2-thiouridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-carboxymethylaminomethyl-2-selenouracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: carboxymethyl group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: selenium atom
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C2 atom
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

5-carboxymethylaminomethyl-2-selenouridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-carboxymethylaminomethyl-2-selenouracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-carboxymethylaminomethyl-2-selenouridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-carboxymethylaminomethyl-2-selenouridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-aminomethyluracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: amino group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

5-aminomethyluridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-aminomethyluracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-aminomethyluridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-aminomethyluridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-methylaminomethyl-2-thiouracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methylamino group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: sulfur atom
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C2 atom
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

5-aminomethyl-2-thiouracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: amino group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: sulfur atom
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C2 atom
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

5-aminomethyl-2-thiouridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-aminomethyl-2-thiouracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-methylaminomethyl-2-thiouridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-methylaminomethyl-2-thiouracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-aminomethyl-2-thiouridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-aminomethyl-2-thiouridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-methylaminomethyl-2-thiouridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-methylaminomethyl-2-thiouridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-methylaminomethyluracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: amino group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

5-methylaminomethyluridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-methylaminomethyluracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-methylaminomethyluridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-methylaminomethyluridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-aminomethyl-2-selenouracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: amino group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: selenium atom
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C2 atom
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

5-aminomethyl-2-selenouridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-aminomethyl-2-selenouracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-aminomethyl-2-selenouridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-aminomethyl-2-selenouridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-methylaminomethyl-2-selenouracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methylamino group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: selenium atom
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C2 atom
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

5-methylaminomethyl-2-selenouridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-methylaminomethyl-2-selenouracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-methylaminomethyl-2-selenouridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-methylaminomethyl-2-selenouridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-carbamoylmethyluracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: carbamoyl group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

5-carbamoylmethyluridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-carbamoylmethyluracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-carbamoylmethyluridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-carbamoylmethyluridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-carbamoylmethyl-2prime-O-methyluridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylribose ring
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: 5-carbamoylmethyluracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-carbamoylmethyl-2prime-O-methyluridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-carbamoylmethyl-2prime-O-methyluridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

N6-threonylcarbamoyladenine nucleobase
type: Class
equivalent class: Class
  intersection of: adenine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: threonyl group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase

N6-threonylcarbamoyladenosine residue
type: Class
equivalent class: Class
  intersection of: adenosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N6-threonylcarbamoyladenine nucleobase
    qualified cardinality: 1
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue

N6-threonylcarbamoyladenylate residue
type: Class
equivalent class: Class
  intersection of: adenylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N6-threonylcarbamoyladenosine residue
    qualified cardinality: 1
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue

N6-methyl-N6-threonylcarbamoyladenine nucleobase
type: Class
equivalent class: Class
  intersection of: adenine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: purine N6 atom
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: threonyl group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase

N6-methyl-N6-threonylcarbamoyladenosine residue
type: Class
equivalent class: Class
  intersection of: adenosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N6-methyl-N6-threonylcarbamoyladenine nucleobase
    qualified cardinality: 1
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue

N6-methyl-N6-threonylcarbamoyladenylate residue
type: Class
equivalent class: Class
  intersection of: adenylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N6-methyl-N6-threonylcarbamoyladenosine residue
    qualified cardinality: 1
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue

2-methylthio-N6-threonylcarbamoyladenine nucleobase
type: Class
equivalent class: Class
  intersection of: adenine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: threonyl group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase

2-methylthio-N6-threonylcarbamoyladenosine residue
type: Class
equivalent class: Class
  intersection of: adenosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2-methylthio-N6-threonylcarbamoyladenine nucleobase
    qualified cardinality: 1
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue

2-methylthio-N6-threonylcarbamoyladenosylate residue
type: Class
equivalent class: Class
  intersection of: adenylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2-methylthio-N6-threonylcarbamoyladenosine residue
    qualified cardinality: 1
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue

N6-glycinylcarbamoyladenine nucleobase
type: Class
equivalent class: Class
  intersection of: adenine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: glycyl group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase

N6-glycinylcarbamoyladenosine residue
type: Class
equivalent class: Class
  intersection of: adenosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N6-glycinylcarbamoyladenine nucleobase
    qualified cardinality: 1
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue

N6-glycinylcarbamoyladenosylate residue
type: Class
equivalent class: Class
  intersection of: adenylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N6-glycinylcarbamoyladenosine residue
    qualified cardinality: 1
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue

pseudouridylate residue
type: Class
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-taurinomethyluracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: tauryl group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

5-taurinomethyluridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-taurinomethyluracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-taurinomethyluridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-taurinomethyluridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-taurinomethyl-2-thiouracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: tauryl group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: sulfur atom
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C2 atom
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

5-taurinomethyl-2-thiouridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-taurinomethyl-2-thiouracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

lysidinylate residue
type: Class
equivalent class: Class
  intersection of: cytidylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: lysidine residue
    qualified cardinality: 1
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue

5-taurinomethyl-2-thiouridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-taurinomethyl-2-thiouridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

lysidine residue
type: Class
equivalent class: Class
  intersection of: cytidine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: lysyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C2 atom
    qualified cardinality: 1
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue

2prime-O-(5-phosphoribosyl)ribose ring
type: Class
subclass of: ribose ring functional derivative

2prime-O-ribosyladenylate phosphate residue
type: Class
equivalent class: Class
  intersection of: adenylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-ribosyladenosine phosphate residue
    qualified cardinality: 1
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue

2prime-O-ribosyladenosine phosphate residue
type: Class
equivalent class: Class
  intersection of: adenosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-(5-phosphoribosyl)ribose ring
    qualified cardinality: 1
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue

2prime-O-ribosylguanosine phosphate residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-(5-phosphoribosyl)ribose ring
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue

2prime-O-ribosylguanylate phosphate residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-ribosylguanosine phosphate residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

N6-isopentenyladenine nucleobase
type: Class
equivalent class: Class
  intersection of: adenine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: prenyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: purine N6 atom
    qualified cardinality: 1
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase

N6-isopentenyladenosine residue
type: Class
equivalent class: Class
  intersection of: adenosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N6-isopentenyladenine nucleobase
    qualified cardinality: 1
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue

N6-isopentenyladenylate residue
type: Class
equivalent class: Class
  intersection of: adenylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N6-isopentenyladenosine residue
    qualified cardinality: 1
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue

2-methylthio-N6-isopentenyladenine nucleobase
type: Class
equivalent class: Class
  intersection of: adenine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: prenyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: purine N6 atom
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase

2-methylthio-N6-isopentenyladenosine residue
type: Class
equivalent class: Class
  intersection of: adenosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2-methylthio-N6-isopentenyladenine nucleobase
    qualified cardinality: 1
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue

2prime-O-methylpseudouridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylpseudouridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

3-methylpseudouridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 3-methyluracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

3-methylpseudouridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 3-methylpseudouridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

1-methyluracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine N1 atom
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

1-methylpseudouridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 1-methylpseudouridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-methoxycarbonylmethyluracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methoxy group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

5-methoxycarbonylmethyluridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-methoxycarbonylmethyluridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-methoxycarbonylmethyl-2-thiouracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methoxy group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: sulfur atom
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C2 atom
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

5-methoxycarbonylmethyl-2-thiouridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-methoxycarbonylmethyl-2-thiouridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-methoxycarbonylmethyl-2prime-O-methyluridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylribose ring
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: 5-methoxycarbonylmethyluracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-methoxycarbonylmethyl-2prime-O-methyluridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-methoxycarbonylmethyl-2prime-O-methyluridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

3-(3-amino-3-carboxypropyl)uridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 3-(3-amino-3-carboxypropyl)uridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

3-(3-amino-3-carboxypropyl)methyluridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylribose ring
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: 3-(3-amino-3-carboxypropyl)uracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

3-(3-amino-3-carboxypropyl)methyluridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 3-(3-amino-3-carboxypropyl)methyluridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

1-methyl-3-(3-amino-3-carboxypropyl)uracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: 3-amino-3-carboxypropyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine N3 atom
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine N1 atom
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

1-methyl-3-(3-amino-3-carboxypropyl)pseudouridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 1-methyl-3-(3-amino-3-carboxypropyl)uracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

1-methyl-3-(3-amino-3-carboxypropyl)pseudouridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 1-methyl-3-(3-amino-3-carboxypropyl)pseudouridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-(carboxyhydroxymethyl)uracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: carboxy group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

5-(carboxyhydroxymethyl)uridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-(carboxyhydroxymethyl)uridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

uracil 5-oxyaceticacid nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: carboxy group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

uridylate 5-oxyacetic acid residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: uridine 5-oxyacetic acid residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

uracil 5-oxyaceticacid methyl ester nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methoxy group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

uridine 5-oxyacetic acid methyl ester residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: uracil 5-oxyaceticacid methyl ester nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

uridylate 5-oxyacetic acid methyl ester residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: uridine 5-oxyacetic acid methyl ester residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-(carboxyhydroxymethyl)uracil methyl ester nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methoxy group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

5-(carboxyhydroxymethyl)uridine methyl ester residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-(carboxyhydroxymethyl)uracil methyl ester nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-(carboxyhydroxymethyl)uridylate methyl ester residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-(carboxyhydroxymethyl)uridine methyl ester residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

N6-(cis-hydroxyisopentenyl)adenine nucleobase
type: Class
equivalent class: Class
  intersection of: adenine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: hydroxy group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase

N6-(cis-hydroxyisopentenyl)adenosine residue
type: Class
equivalent class: Class
  intersection of: adenosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N6-(cis-hydroxyisopentenyl)adenine nucleobase
    qualified cardinality: 1
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue

N6-(cis-hydroxyisopentenyl)adenylate residue
type: Class
equivalent class: Class
  intersection of: adenylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N6-(cis-hydroxyisopentenyl)adenosine residue
    qualified cardinality: 1
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue

2-methylthio-N6-(cis-hydroxyisopentenyl)adenine nucleobase
type: Class
equivalent class: Class
  intersection of: adenine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: hydroxy group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase

2-methylthio-N6-(cis-hydroxyisopentenyl)adenosine residue
type: Class
equivalent class: Class
  intersection of: adenosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2-methylthio-N6-(cis-hydroxyisopentenyl)adenine nucleobase
    qualified cardinality: 1
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue

2-methylthio-N6-(cis-hydroxyisopentenyl)adenylate residue
type: Class
equivalent class: Class
  intersection of: adenylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2-methylthio-N6-(cis-hydroxyisopentenyl)adenosine residue
    qualified cardinality: 1
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue

norvalyl group
type: Class
subclass of: group
comment: Not in ChEBI. It derives from 2-aminopentanoic acid (norvaline). There are two enantiomers.

N6-hydroxynorvalylcarbamoyladenine nucleobase
type: Class
equivalent class: Class
  intersection of: adenine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: hydroxy group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase

N6-hydroxynorvalylcarbamoyladenosine residue
type: Class
equivalent class: Class
  intersection of: adenosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N6-hydroxynorvalylcarbamoyladenine nucleobase
    qualified cardinality: 1
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue

N6-hydroxynorvalylcarbamoyladenylate residue
type: Class
equivalent class: Class
  intersection of: adenylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N6-hydroxynorvalylcarbamoyladenosine residue
    qualified cardinality: 1
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue

2-methylthio-N6-hydroxynorvalylcarbamoyladenine nucleobase
type: Class
equivalent class: Class
  intersection of: adenine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: hydroxy group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: adenine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenine nucleobase

2-methylthio-N6-hydroxynorvalylcarbamoyladenosine residue
type: Class
equivalent class: Class
  intersection of: adenosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2-methylthio-N6-hydroxynorvalylcarbamoyladenine nucleobase
    qualified cardinality: 1
subclass of: adenosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenosine residue

2-methylthio-N6-hydroxynorvalylcarbamoyladenylate residue
type: Class
equivalent class: Class
  intersection of: adenylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N6-hydroxynorvalylcarbamoyladenylate residue
    qualified cardinality: 1
subclass of: adenylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: adenylate residue

agmatinyl group
type: Class
subclass of: group
comment: Not in ChEBI. It derives from agmatine (CHEBI:17431; N-(4-aminobutyl)guanidine).

agmatidinylate residue
type: Class
equivalent class: Class
  intersection of: cytidylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: agmatidine residue
    qualified cardinality: 1
subclass of: cytidylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidylate residue

agmatidine residue
type: Class
equivalent class: Class
  intersection of: cytidine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: agmatinyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C2 atom
    qualified cardinality: 1
subclass of: cytidine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: cytidine residue

N2,7,2prime-O-trimethylguanosine residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylribose ring
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: N2,7-dimethylguanine nucleobase
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

N2,7,2prime-O-trimethylguanylate residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N2,7,2prime-O-trimethylguanosine residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

5-isopentenylaminomethyluracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: prenyl group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

5-isopentenylaminomethyluridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-isopentenylaminomethyluridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-isopentenylaminomethyl-2prime-O-methyluridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 2prime-O-methylribose ring
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: 5-isopentenylaminomethyluracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-isopentenylaminomethyluridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-isopentenylaminomethyluracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative

5-isopentenylaminomethyl-2prime-O-methyluridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-isopentenylaminomethyl-2prime-O-methyluridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

5-isopentenylaminomethyl-2-thiouracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: prenyl group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: sulfur atom
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine C2 atom
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

5-isopentenylaminomethyl-2-thiouridine residue
type: Class
equivalent class: Class
  intersection of: uridine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-isopentenylaminomethyl-2-thiouracil nucleobase
    qualified cardinality: 1
subclass of: uridine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridine residue

5-isopentenylaminomethyl-2-thiouridylate residue
type: Class
equivalent class: Class
  intersection of: uridylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 5-isopentenylaminomethyl-2-thiouridine residue
    qualified cardinality: 1
subclass of: uridylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uridylate residue

wyosine residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: imidazopurine C6 atom
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: imidazopurine N4 atom
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

wyosinylate residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: wyosine residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

methylwyosine residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: imidazopurine C7 atom
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: imidazopurine C6 atom
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: imidazopurine N4 atom
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

imidazopurine C7 atom
type: Class
subclass of: imidazopurine carbon atom

methylwyosinylate residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: methylwyosine residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

archaeosine residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: carboxamidine group
      intersection of: Restriction
        on property: covalently connected to
        some values from: 7-deazapurine C7 atom
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

carboxamidine group
type: Class
subclass of: group
comment: not in ChEBI
RNAO_1000027: -C(=NH)-NH2

7-deazapurine C7 atom
type: Class
subclass of: carbon atom

archaeosinylate residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: archaeosine residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

7-cyano-7-deazaguanosine residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: cyano group
      intersection of: Restriction
        on property: covalently connected to
        some values from: 7-deazapurine C7 atom
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

7-cyano-7-deazaguanylate residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 7-cyano-7-deazaguanosine residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

7-aminomethyl-7-deazaguanosine residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: preQ1base nucleobase
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

7-aminomethyl-7-deazaguanylate residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 7-aminomethyl-7-deazaguanosine residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

preQ1base nucleobase
type: Class
equivalent class: Class
  intersection of: guanine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: amino group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: guanine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanine nucleobase

cyclopentenediolyl group
type: Class
subclass of: group
comment: cyclopent-(2-3-ene-)4,5-diol-1-yl
comment: not in ChEBI

Qbase nucleobase
type: Class
equivalent class: Class
  intersection of: guanine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: cyclopentenediolyl group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: guanine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanine nucleobase

queuosine residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Qbase nucleobase
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

queuosinylate residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: queuosine residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

mannosyl-Qbase nucleobase
type: Class
equivalent class: Class
  intersection of: guanine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: mannosyl group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: guanine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanine nucleobase

mannosyl-queuosine residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: mannosyl-Qbase nucleobase
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

mannosyl-queuosinylate residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: mannosyl-queuosine residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

galactosyl-Qbase nucleobase
type: Class
equivalent class: Class
  intersection of: guanine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: beta-D-galactosyl group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: guanine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanine nucleobase

galactosyl-queuosine residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: galactosyl-Qbase nucleobase
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

galactosyl-queuosinylate residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: galactosyl-queuosine residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

glutamyl-Qbase nucleobase
type: Class
equivalent class: Class
  intersection of: guanine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: glutamyl group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: guanine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanine nucleobase

gluQ residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: glutamyl-Qbase nucleobase
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

gluQylate residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: gluQ residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

imidazopurine C6 atom
type: Class
subclass of: imidazopurine carbon atom

imidazopurine N4 atom
type: Class
subclass of: nitrogen atom

4-demethylwyosine residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: imidazopurine C6 atom
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

4-demethylwyosinylate residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 4-demethylwyosine residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

isowyosine residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: imidazopurine C7 atom
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: imidazopurine C6 atom
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

isowyosinylate residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: isowyosine residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

undermodified hydroxywybutosine residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: imidazopurine C6 atom
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: imidazopurine N4 atom
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: hydroxy group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

undermodified hydroxywybutosinylate residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: undermodified hydroxywybutosine residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

10-glutamylwyosine residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: 3-amino-3-carboxypropyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: imidazopurine C6 atom
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: imidazopurine C6 atom
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: imidazopurine N4 atom
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

10-glutamylwyosinylate residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 10-glutamylwyosine residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

10-glutamyl-4-demethylwyosine residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: 3-amino-3-carboxypropyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: imidazopurine C6 atom
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: imidazopurine C6 atom
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

10-glutamyl-4-demethylwyosinylate residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 10-glutamyl-4-demethylwyosine residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

10-glutamylmethylesterwyosine residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: imidazopurine C6 atom
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: imidazopurine N4 atom
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methoxy group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

10-glutamylmethylesterwyosinylate residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: 10-glutamylmethylesterwyosine residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

2,3-epoxycyclopenta-(4,5-diol)-1-yl group
type: Class
subclass of: group
comment: not in ChEBI

epoxy-Qbase nucleobase
type: Class
equivalent class: Class
  intersection of: guanine nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: 2,3-epoxycyclopenta-(4,5-diol)-1-yl group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: guanine nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanine nucleobase

epoxyqueuosine residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: epoxy-Qbase nucleobase
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

epoxyqueuosinylate residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: epoxyqueuosine residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

7-methylguanosine cap structure
type: Class
subclass of: 5prime cap structure

N2,N2,7-trimethylguanosine cap structure
type: Class
subclass of: 5prime cap structure

gamma-methylphosphate cap structure
type: Class
subclass of: 5prime cap structure

wybutosine residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: imidazopurine C6 atom
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: imidazopurine N4 atom
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methoxy group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

hydroxywybutosine residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: imidazopurine C6 atom
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: imidazopurine N4 atom
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methoxy group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

peroxywybutosine residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: imidazopurine C6 atom
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: imidazopurine N4 atom
    qualified cardinality: 1
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: methoxy group
      intersection of: Restriction
        on property: covalently connected to
        on class: Class
        qualified cardinality: 1
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

wybutosinyl residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: wybutosine residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

hydroxywybutosinyl residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: hydroxywybutosine residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

peroxywybutosinyl residue
type: Class
equivalent class: Class
  intersection of: guanylate residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: peroxywybutosine residue
    qualified cardinality: 1
subclass of: guanylate residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanylate residue

3-(3-amino-3-carboxypropyl)uracil nucleobase
type: Class
equivalent class: Class
  intersection of: uracil nucleobase functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: Class
      intersection of: 3-amino-3-carboxypropyl group
      intersection of: Restriction
        on property: covalently connected to
        some values from: pyrimidine N3 atom
    qualified cardinality: 1
subclass of: uracil nucleobase functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: uracil nucleobase

sulfur atom
type: Class
subclass of: atom
RNAO_1000027: S

selenium atom
type: Class
subclass of: atom
RNAO_1000027: Se

N2,7-dimethylguanosine residue
type: Class
equivalent class: Class
  intersection of: guanosine ribonucleoside residue functional derivative
  intersection of: Restriction
    on property: has direct part
    on class: N2,7-dimethylguanine nucleobase
    qualified cardinality: 1
subclass of: guanosine ribonucleoside residue functional derivative
subclass of: Restriction
  on property: has functional parent
  some values from: guanosine residue

Class
intersection of: amino group
intersection of: Restriction
  on property: covalently connected to
  on class: Class
    intersection of: methyl group
    intersection of: Restriction
      on property: covalently connected to
      some values from: pyrimidine C5 atom
  qualified cardinality: 1

Class
intersection of: amino group
intersection of: Restriction
  on property: covalently connected to
  on class: Class
    intersection of: methyl group
    intersection of: Restriction
      on property: covalently connected to
      some values from: pyrimidine C5 atom
  qualified cardinality: 1

Class
intersection of: amino group
intersection of: Restriction
  on property: covalently connected to
  on class: Class
    intersection of: methyl group
    intersection of: Restriction
      on property: covalently connected to
      some values from: pyrimidine C5 atom
  qualified cardinality: 1

Class
intersection of: carboxy group
intersection of: Restriction
  on property: covalently connected to
  on class: Class
    intersection of: methoxy group
    intersection of: Restriction
      on property: covalently connected to
      some values from: pyrimidine C5 atom
  qualified cardinality: 1

Class
intersection of: carboxy group
intersection of: Restriction
  on property: covalently connected to
  on class: Class
    intersection of: hydroxymethyl group
    intersection of: Restriction
      on property: covalently connected to
      some values from: pyrimidine C5 atom
  qualified cardinality: 1

Class
intersection of: norvalyl group
intersection of: Restriction
  on property: covalently connected to
  on class: Class
    intersection of: carbamoyl group
    intersection of: Restriction
      on property: covalently connected to
      some values from: purine N6 atom
  qualified cardinality: 1

Class
intersection of: norvalyl group
intersection of: Restriction
  on property: covalently connected to
  on class: Class
    intersection of: carbamoyl group
    intersection of: Restriction
      on property: covalently connected to
      some values from: purine N6 atom
  qualified cardinality: 1

Class
intersection of: amino group
intersection of: Restriction
  on property: covalently connected to
  on class: Class
    intersection of: methyl group
    intersection of: Restriction
      on property: covalently connected to
      some values from: pyrimidine C5 atom
  qualified cardinality: 1

Class
intersection of: amino group
intersection of: Restriction
  on property: covalently connected to
  on class: Class
    intersection of: methyl group
    intersection of: Restriction
      on property: covalently connected to
      some values from: pyrimidine C5 atom
  qualified cardinality: 1

Class
intersection of: amino group
intersection of: Restriction
  on property: covalently connected to
  on class: Class
    intersection of: methyl group
    intersection of: Restriction
      on property: covalently connected to
      some values from: 7-deazapurine C7 atom
  qualified cardinality: 1

Class
intersection of: cyclopentenediolyl group
intersection of: Restriction
  on property: covalently connected to
  on class: Class
    intersection of: amino group
    intersection of: Restriction
      on property: covalently connected to
      on class: Class
        intersection of: methyl group
        intersection of: Restriction
      qualified cardinality: 1
  qualified cardinality: 1

Class
intersection of: cyclopentenediolyl group
intersection of: Restriction
  on property: covalently connected to
  on class: Class
    intersection of: amino group
    intersection of: Restriction
      on property: covalently connected to
      on class: Class
        intersection of: methyl group
        intersection of: Restriction
      qualified cardinality: 1
  qualified cardinality: 1

Class
intersection of: cyclopentenediolyl group
intersection of: Restriction
  on property: covalently connected to
  on class: Class
    intersection of: amino group
    intersection of: Restriction
      on property: covalently connected to
      on class: Class
        intersection of: methyl group
        intersection of: Restriction
      qualified cardinality: 1
  qualified cardinality: 1

Class
intersection of: amino group
intersection of: Restriction
  on property: covalently connected to
  on class: Class
    intersection of: methyl group
    intersection of: Restriction
      on property: covalently connected to
      some values from: 7-deazapurine C7 atom
  qualified cardinality: 1

Class
intersection of: 3-amino-3-carboxypropyl group
intersection of: Restriction
  on property: covalently connected to
  some values from: imidazopurine C7 atom
intersection of: Restriction
  on property: covalently connected to
  on class: Class
    intersection of: carboxy group
    intersection of: Restriction
      on property: covalently connected to
      on class: methoxy group
      qualified cardinality: 1
  qualified cardinality: 1

Class
intersection of: 3-amino-3-carboxypropyl group
intersection of: Restriction
  on property: covalently connected to
  some values from: imidazopurine C7 atom
intersection of: Restriction
  on property: covalently connected to
  on class: hydroxy group
  qualified cardinality: 1
intersection of: Restriction
  on property: covalently connected to
  on class: Class
    intersection of: carboxy group
    intersection of: Restriction
      on property: covalently connected to
      on class: methoxy group
      qualified cardinality: 1
  qualified cardinality: 1

Class
intersection of: 3-amino-3-carboxypropyl group
intersection of: Restriction
  on property: covalently connected to
  some values from: imidazopurine C7 atom
intersection of: Restriction
  on property: covalently connected to
  on class: hydroperoxyl
  qualified cardinality: 1
intersection of: Restriction
  on property: covalently connected to
  on class: Class
    intersection of: carboxy group
    intersection of: Restriction
      on property: covalently connected to
      on class: methoxy group
      qualified cardinality: 1
  qualified cardinality: 1