# Maintainer: Guoyi ZHang # Contributor: PolpOnline # Contributor: Eric Biggers pkgname=abyss pkgver=2.3.7 pkgrel=3 pkgdesc="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler" arch=("i686" "x86_64") url="https://github.com/bcgsc/abyss" license=("GPL3") depends=("openmpi" "make" "sqlite" "perl") makedepends=("boost" "sparsehash" "btllib") optdepends=( 'pigz: for parallel gzip' 'samtools: for reading SAM files' ) source=("$pkgname-$pkgver.tar.gz::https://github.com/bcgsc/abyss/archive/$pkgver.tar.gz") sha512sums=('71fe616724e61174d5034b91de9b0495b7c3d8cd2c3c88981048089003041bab6cad4ff608aac10bcb0846aaac047d73b9d6c2e1f52c0681ac351c5ef5a0831d') build() { cd "${pkgname}-${pkgver}" ./autogen.sh ./configure --prefix=/usr --with-mpi=/usr/lib/openmpi --disable-werror make } package() { cd "${pkgname}-${pkgver}" make DESTDIR="${pkgdir}" install install -Dm644 "LICENSE" "$pkgdir/usr/share/licenses/$pkgname/LICENSE" }