# Maintainer: Michael Schubert # Contributor: moostik # Contributor: mick elliot pkgname=emboss _pkgname=EMBOSS pkgver=6.6.0 pkgrel=8 pkgdesc="A collection of molecular biology applications. https://doi.org/10.1016/s0168-9525(00)02024-2" arch=('x86_64' 'i686') url="http://emboss.sourceforge.net/" depends=('gd' 'pcre' 'java-runtime') optdepends=('libmariadbclient' 'postgresql-libs') makedepends=('libmariadbclient' 'postgresql-libs' 'java-environment') options=('!libtool') license=('GPL2') source=("ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-$pkgver.tar.gz") sha256sums=('7184a763d39ad96bb598bfd531628a34aa53e474db9e7cac4416c2a40ab10c6e') build() { cd "$srcdir/$_pkgname-$pkgver" ./configure --prefix=/usr --enable-large --with-x sed -i 's|$(bindir)/embossupdate|:|' Makefile JAVA_CFLAGS="-I$JAVA_HOME/include -I$JAVA_HOME/include/linux" make } package() { cd "$srcdir/$_pkgname-$pkgver" make DESTDIR="$pkgdir" install # provided pcre headers conflict with pcre mv "$pkgdir"/usr/include "$pkgdir"/usr/emboss mkdir "$pkgdir"/usr/include mv "$pkgdir"/usr/emboss "$pkgdir"/usr/include/ mv "$pkgdir"/usr/bin/{,emboss_}showdb # conflict with sqlite mv "$pkgdir"/usr/bin/{,emboss_}wordcount # conflict with texlive-latexextra }