# Maintainer : bipin kumar <kbipinkumar@pm.me>

pkgname=prodigal
_pkgname=Prodigal
pkgver=2.6.3
pkgrel=3
pkgdesc='Fast, reliable protein-coding gene prediction for prokaryotic genomes.'
arch=('i686' 'x86_64')
url="https://github.com/hyattpd/Prodigal"
license=('GPL3')
depends=('glibc' 'zlib')
source=("${pkgname}-${pkgver}.tar.gz::https://github.com/hyattpd/Prodigal/archive/refs/tags/v${pkgver}.tar.gz"
        "makefile.patch"
        "fptr.h"
        "main.patch"
        "node.patch"
        "seqc.patch"
        "seqh.patch"
        "train.patch")
sha256sums=('89094ad4bff5a8a8732d899f31cec350f5a4c27bcbdd12663f87c9d1f0ec599f'
            'a2a8b04e2102d9283d7df749d85ec0b0fb7d192e7461bb4ec1ec4b21a5a0300a'
            'f854ea44d77ccbd4d078507019e4091776d09971af931f6c0ec904ce3e8e6448'
            'afcf19b7af5de9f909c5c42d7dbcce76b545774cf22d4b8cfa2df3d7af932951'
            '527634cd5960207b4f14c467df119791e9089b0b84a42fc2e045e079d91d8a68'
            '755ef320d70ed4e165486d9b37b7114608495740b91ed1acccc1ee95632e5641'
            '56c7923a74f7ef04b67699878e351ec851e1823ce2b6c6f56153417201ad468c'
            '6d07da01ccd7f34d491a599c1df9949d5c5727fc5e07ac43e0d5e35ee1131d9b')

prepare (){
  cp *.patch ${_pkgname}-${pkgver}
  cp *.h ${_pkgname}-${pkgver}
  cd ${_pkgname}-${pkgver}
  # Stop overwriting the optimization with -O3
  patch -p1 <  makefile.patch
  # backport zlib compression support.
  patch -p1 <  main.patch
  patch -p1 <  node.patch
  patch -p1 <  seqc.patch
  patch -p1 <  seqh.patch
  patch -p1 <  train.patch

}

build() {
  cd ${_pkgname}-${pkgver}
  make -j1
}

package() {
  cd ${_pkgname}-${pkgver}
    make install INSTALLDIR=${pkgdir}/usr/bin
}