# Maintainer: bipin kumar <kbipinkumar@pm.me>

pkgname=transtermhp
pkgver=2.09
pkgrel=3
pkgdesc="Find rho-independent transcription terminators in bacterial genomes"
arch=('i686' 'x86_64')
url="http://transterm.cbcb.umd.edu/index.php"
license=('GPL')
depends=('gcc-libs' 'python' 'bash')
makedepends=('quilt')
provides=('2ndscore')
source=("http://transterm.cbcb.umd.edu/transterm_hp_v${pkgver}.zip"
        "series"
        "0002-read_seq-return-NULL-instead-of-false.patch"
        "2to3.patch"
        "0003-Don-t-overwrite-CXXFLAGS.patch"
        "hardening.patch"
        )
        
b2sums=('c4553c96dac3c3b06a050d540fca15ad0688cb10e905b3b63c33734e398521a692c759b9d79476acf9241cebb0534b40b96d8a015ccb50edbc59f1888769f470'
        'f17b2afc1ae28d37d1b09de546b992e7064f8aff3400c251242b24bf51fc3ac7eb9abad9043b066655490c0ccab9939320e30d38115c81c2819e0d10f608ad6e'
        'eb798aa12ac2ecc129675cc40c08d0db09a9e66b693aaf04f9ab6b71b6e87eb111187af548b28a6d51068611565c056699e7531d909774e74eaf3f1c696b7ed1'
        'e028abf8bc84dafd879b1a0a9c1281624ee5bc2a6248012a4841c4ad6a782e3bc9c1ec97b31bedeee83bcbc71b6fc966aa3858120cabafd9ca1fc5b65de78cdb'
        'efd9062df280d010277147853f9ebb61fec1985355535746c26b7d9055498a24242dfb5001a2fb4dc7e3a217755b70242f4dd882678bcf2c6986ced8de5522d3'
        '013afe630df1ef74dc569f938619ff5b7174f8aabd20cb2362b308ab3684462a9c65f03e78fb29430626b4ca6760f7a99afe1b37e22f5fe3edae83cc9e85bf24')

prepare (){
    # Copy patches to source folder
    # (courtesy debian med project https://launchpad.net/ubuntu/+source/transtermhp/2.09-5)
    mkdir -p transterm_hp_v${pkgver}/patches
    cp *.patch transterm_hp_v${pkgver}/patches
    cp series transterm_hp_v${pkgver}/patches
    # Apply Patches
    cd transterm_hp_v${pkgver}
    quilt push -a

}

build() {
  cd transterm_hp_v${pkgver}
  make -j1 distribution
}

test(){
  cd transterm_hp_v${pkgver}
  make test
}

package() {
  cd transterm_hp_v${pkgver}/transterm_hp_v${pkgver}
    install -D -m755 transterm "$pkgdir"/usr/bin/transterm
    install -D -m755 2ndscore "$pkgdir"/usr/bin/2ndscore
    install -d "$pkgdir"/usr/share/doc/${pkgname}/examples/
    install -d "$pkgdir"/usr/share/${pkgname}/examples/
    install -D -m755 *.sh "$pkgdir"/usr/share/doc/${pkgname}/examples/
    install -D -m755 *.py "$pkgdir"/usr/share/doc/${pkgname}/examples/
    install -D -m644 *.dat "$pkgdir"/usr/share/${pkgname}/examples/
    install -D -m644 USAGE.txt "$pkgdir"/usr/share/doc/${pkgname}/USAGE.txt 
}