BioAssay Ontology
type: Ontology
imports: bao module vocabularies.owl
date: March 9, 2023
version info: 2.7.5
label: BAO
comment: Created by: Hande Küçük McGinty, Janice Kranz, Joseph Ostrow, Alex Clark, Yu Lin, Saminda Abeyruwan, Uma Vempati, Kunie Sakurai, Vance Lemmon, Ubbo Visser, John Turner, Nicolette Ross, Joan Glenny-Pescov, Jiaming Hu, Caty Chung, Stephan Schurer*
license: https://creativecommons.org/licenses/by-sa/4.0/
comment: Contact: Stephan Schurer schurer at med dot miami dot edu

BAO_0000006
type: Class
equivalent class: Class
  intersection of: BAO_0000201
  intersection of: Restriction
    on property: BAO_0000196
    some values from: BAO_0000090
  intersection of: Restriction
    on property: BAO_0000196
    all values from: BAO_0000090
  intersection of: Restriction
    on property: BAO_0000195
    qualified cardinality: 1
    on data range: float

BAO_0000015
type: Class
subclass of: Restriction
  on property: BAO_0090012
  some values from: Class
    intersection of: BAO_0003043
    intersection of: Restriction
      on property: BAO_0003102
      some values from: BAO_0002001
subclass of: Restriction
  on property: BAO_0090012
  some values from: Class
    intersection of: BAO_0003111
    intersection of: Restriction
      on property: BAO_0003102
      some values from: BAO_0003064
subclass of: Restriction
  on property: BAO_0000209
  min qualified cardinality: 1
  on class: BAO_0000040

BAO_0000096
type: Class
equivalent class: Class
  intersection of: BAO_0000201
  intersection of: Restriction
    on property: BAO_0000196
    some values from: BAO_0000094
  intersection of: Restriction
    on property: BAO_0000196
    all values from: BAO_0000094
  intersection of: Restriction
    on property: BAO_0000195
    qualified cardinality: 1
    on data range: float

BAO_0000143
type: Class
equivalent class: Class
  intersection of: BAO_0000082
  intersection of: Restriction
    on property: BAO_0000196
    some values from: BAO_0000084
  intersection of: Restriction
    on property: BAO_0001105
    some values from: BAO_0000431
  intersection of: Restriction
    on property: BAO_0000196
    all values from: BAO_0000084
  intersection of: Restriction
    on property: BAO_0001105
    all values from: BAO_0000431
  intersection of: Restriction
    on property: BAO_0000195
    qualified cardinality: 1
    on data range: float

BAO_0000180
type: Class
equivalent class: Class
  intersection of: BAO_0000179
  intersection of: Restriction
    on property: BAO_0000183
    some values from: BAO_0190000
  intersection of: Restriction
    on property: BAO_0000183
    all values from: BAO_0190000
  intersection of: Restriction
    on property: BAO_0002666
    qualified cardinality: 1
    on data range: float
disjoint with: BAO_0000181

BAO_0000200
type: Class
equivalent class: Class
  intersection of: BAO_0000082
  intersection of: Restriction
    on property: BAO_0000196
    some values from: BAO_0000087
  intersection of: Restriction
    on property: BAO_0001105
    some values from: BAO_0001104
  intersection of: Restriction
    on property: BAO_0000196
    all values from: BAO_0000087
  intersection of: Restriction
    on property: BAO_0001105
    all values from: BAO_0001104
  intersection of: Restriction
    on property: BAO_0000195
    qualified cardinality: 1
    on data range: float

BAO_0000201
type: Class
equivalent class: Class
  intersection of: BAO_0000082
  intersection of: Restriction
    on property: BAO_0000196
    some values from: BAO_0000091
  intersection of: Restriction
    on property: BAO_0001105
    some values from: BAO_0000065
  intersection of: Restriction
    on property: BAO_0000196
    all values from: BAO_0000091
  intersection of: Restriction
    on property: BAO_0001105
    all values from: BAO_0000065
  intersection of: Restriction
    on property: BAO_0000195
    qualified cardinality: 1
    on data range: float

BAO_0000202
type: Class
equivalent class: Class
  intersection of: BAO_0001103
  intersection of: Restriction
    on property: BAO_0000196
    some values from: Class
      union of: BAO_0000090
      union of: BAO_0000094
  intersection of: Restriction
    on property: BAO_0000196
    all values from: Class
      union of: BAO_0000090
      union of: BAO_0000094
  intersection of: Restriction
    on property: BAO_0000195
    qualified cardinality: 1
    on data range: float

BAO_0000269
type: Class
subclass of: Restriction
  on property: BAO_0000300
  qualified cardinality: 1
  on data range: string

BAO_0000346
type: Class
equivalent class: Class
  intersection of: BAO_0000200
  intersection of: Restriction
    on property: BAO_0000195
    has value: 50.0

BAO_0000347
type: Class
equivalent class: Class
  intersection of: BAO_0000201
  intersection of: Restriction
    on property: BAO_0000195
    has value: 50.0

BAO_0000348
type: Class
equivalent class: Class
  intersection of: BAO_0000201
  intersection of: Restriction
    on property: BAO_0000195
    has value: 80.0

BAO_0000349
type: Class
equivalent class: Class
  intersection of: BAO_0000202
  intersection of: Restriction
    on property: BAO_0000195
    has value: 50.0

BAO_0000533
type: Class
subclass of: Restriction
  on property: BAO_0002845
  qualified cardinality: 1
  on data range: int

BAO_0000535
type: Class
subclass of: Restriction
  on property: BAO_0002787
  qualified cardinality: 1
  on data range: int

BAO_0000550
type: Class
subclass of: Restriction
  on property: BAO_0002926
  some values from: BAO_0003048
subclass of: Restriction
  on property: BAO_0002813
  qualified cardinality: 1
  on data range: int

BAO_0000585
type: Class
equivalent class: Class
  intersection of: BAO_0000179
  intersection of: Restriction
    on property: BAO_0000097
    some values from: BAO_0190002
  intersection of: Restriction
    on property: BAO_0000097
    all values from: BAO_0190002
  intersection of: Restriction
    on property: BAO_0000109
    qualified cardinality: 1
    on data range: float

BAO_0000588
type: Class
equivalent class: Class
  intersection of: BAO_0000006
  intersection of: Restriction
    on property: BAO_0000195
    has value: 50.0

BAO_0000656
type: Class
subclass of: Class
  intersection of: Restriction
    on property: BAO_0000196
    some values from: BAO_0000084
  intersection of: Restriction
    on property: BAO_0000196
    all values from: BAO_0000084
  intersection of: Restriction
    on property: BAO_0000195
    qualified cardinality: 1
    on data range: float

BAO_0000804
type: Class
subclass of: Class
  intersection of: Restriction
    on property: BAO_0000196
    some values from: BAO_0000091
  intersection of: Restriction
    on property: BAO_0000196
    all values from: BAO_0000091
  intersection of: Restriction
    on property: BAO_0000195
    qualified cardinality: 1
    on data range: float

BAO_0000805
type: Class
subclass of: Class
  intersection of: Restriction
    on property: BAO_0000196
    some values from: BAO_0000087
  intersection of: Restriction
    on property: BAO_0000196
    all values from: BAO_0000087
  intersection of: Restriction
    on property: BAO_0000195
    qualified cardinality: 1
    on data range: float

Opera QEHS
type: Class
subclass of: BAO_0000697

BAO_0001103
type: Class
equivalent class: Class
  intersection of: BAO_0000082
  intersection of: Restriction
    on property: BAO_0000196
    some values from: BAO_0000084
  intersection of: Restriction
    on property: BAO_0001105
    some values from: BAO_0000431
  intersection of: Restriction
    on property: BAO_0000196
    all values from: BAO_0000084
  intersection of: Restriction
    on property: BAO_0001105
    all values from: BAO_0000431
  intersection of: Restriction
    on property: BAO_0000195
    qualified cardinality: 1
    on data range: float

BAO_0001106
type: Class
equivalent class: Class
  intersection of: BAO_0000096
  intersection of: Restriction
    on property: BAO_0000195
    has value: 50.0

BAO_0001108
type: Class
equivalent class: Class
  intersection of: BAO_0000096
  intersection of: Restriction
    on property: BAO_0000195
    has value: 100.0

phosphorylated
type: Class
subclass of: BAO_0000672
IAO_0000115: A quality of an amino acid residue that has a phosphate group attached to it.

BAO_0002051
type: Class
subclass of: Restriction
  on property: BAO_0002813
  qualified cardinality: 1
  on data range: int

BAO_0002114
type: Class
equivalent class: Class
  intersection of: BAO_0000179
  intersection of: Restriction
    on property: BAO_0002668
    some values from: BAO_0190003
  intersection of: Restriction
    on property: BAO_0002668
    all values from: BAO_0190003
  intersection of: Restriction
    on property: BAO_0002669
    qualified cardinality: 1
    on data range: float

computational structure analysis
type: Class
subclass of: BAO_0002026
subclass of: BAO_0002095

2D structure prediction
type: Class
subclass of: computational structure analysis

PREDATOR structure prediction
type: Class
subclass of: 2D structure prediction

PredictProtein structure prediction
type: Class
subclass of: 2D structure prediction

3D structure prediction
type: Class
subclass of: computational structure analysis

computational structure solution
type: Class
subclass of: 3D structure prediction

computational NMR structure solution
type: Class
subclass of: computational structure solution

computational X-ray structure solution
type: Class
subclass of: computational structure solution

computational electron microscopy structure solution
type: Class
subclass of: computational structure solution

homology modeling
type: Class
subclass of: 3D structure prediction
IAO_0000115: Also known as comparative modeling of protein, refers to constructing an atomic-resolution model of the "target" protein from its amino acid sequence and an experimental three-dimensional structure of a related homologous protein (the "template").

MODELLER homology modeling
type: Class
subclass of: homology modeling

SwissModel homology modeling
type: Class
subclass of: homology modeling

protein threading
type: Class
subclass of: 3D structure prediction
IAO_0000115: A method of computational protein structure prediction used for protein sequences which have the same fold as proteins of known structures but do not have homologous proteins with known structure.

RAPTOR protein threading
type: Class
subclass of: protein threading
IAO_0000115: protein threading software used for protein structure prediction, given a primary sequence.

protein-protein docking
type: Class
subclass of: 3D structure prediction

global range molecular matching
type: Class
subclass of: protein-protein docking

structure alignment
type: Class
subclass of: 3D structure prediction
IAO_0000115: Structural alignment software attempts to establish equivalences between two or more polymer structures based on their shape and three-dimensional conformation.

distance matrix alignment
type: Class
subclass of: structure alignment
IAO_0000115: DALI breaks the input structures into hexapeptide fragments and calculates a distance matrix by evaluating the contact patterns between successive fragments.

matching molecular models obtained from theory
type: Class
subclass of: structure alignment

quantitative structure activity relationship analysis
type: Class
subclass of: BAO_0002094
subclass of: BAO_0002410
IAO_0000115: Mathematical relationships linking chemical structure and pharmacological activity in a quantitative manner for a series of compounds. Methods which can be used in QSAR include various regression and pattern recognition techniques.

linear QSAR
type: Class
subclass of: quantitative structure activity relationship analysis

partial least squares QSAR
type: Class
subclass of: linear QSAR

regression QSAR
type: Class
subclass of: linear QSAR

non-linear QSAR
type: Class
subclass of: quantitative structure activity relationship analysis

neural network QSAR
type: Class
subclass of: non-linear QSAR

recursive partitioning QSAR
type: Class
subclass of: non-linear QSAR

three dimensional QSAR
type: Class
subclass of: quantitative structure activity relationship analysis
IAO_0000115: Involves the analysis of the quantitative relationship between the biological activity of a set of compounds and their three- dimensional properties using statistical correlation methods.

comparative molecular field analysis
type: Class
subclass of: three dimensional QSAR
IAO_0000115: A 3D-QSAR method that uses statistical correlation techniques for the analysis of the quantitative relationship between the biological activity of a set of compounds with a specified alignment, and their three-dimensional electronic and steric properties.

comparative molecular similarity indices analysis
type: Class
subclass of: three dimensional QSAR

self organizing molecular field analysis
type: Class
subclass of: three dimensional QSAR

two dimensional QSAR
type: Class
subclass of: quantitative structure activity relationship analysis

Cellomics ArrayScan
type: Class
subclass of: BAO_0000697

IN Cell Analyzer
type: Class
subclass of: BAO_0000697

BAO_0002618
type: Class
subclass of: Class
  intersection of: Restriction
    on property: BAO_0002623
    some values from: BAO_0190001
  intersection of: Restriction
    on property: BAO_0002623
    all values from: BAO_0190001
  intersection of: Restriction
    on property: BAO_0002622
    qualified cardinality: 1
    on data range: Datatype
      on datatype: float
      with restrictions:
        min inclusive: 0.0
subclass of: PATO_0002182

BAO_0002667
type: Class
equivalent class: Class
  intersection of: BAO_0000201
  intersection of: Restriction
    on property: BAO_0000195
    has value: 90.0

BAO_0003048
type: Class
subclass of: Restriction
  on property: BAO_0002788
  qualified cardinality: 1
  on data range: int
subclass of: Restriction
  on property: BAO_0002811
  qualified cardinality: 1
  on data range: int
subclass of: CLO_0000001