{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2019-09-23T18:50:19.036357Z",
     "start_time": "2019-09-23T18:50:19.031896Z"
    }
   },
   "source": [
    "# Resolving\n",
    "\n",
    "[Resolvers](https://nexus-forge.readthedocs.io/en/latest/interaction.html#resolving) are helpers to find commonly used resources that one may want to link resources to. Resolvers are configured in the `Resolvers` section of the configuration file. "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {
    "ExecuteTime": {
     "end_time": "2019-09-23T18:50:20.068658Z",
     "start_time": "2019-09-23T18:50:19.054054Z"
    }
   },
   "outputs": [],
   "source": [
    "from kgforge.core import KnowledgeGraphForge"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [],
   "source": [
    "token=\"eyJhbGciOiJSUzI1NiIsInR5cCIgOiAiSldUIiwia2lkIiA6ICI5T0R3Z1JSTFVsTTJHbFphVDZjVklnenJsb0lzUWJmbTBDck1icXNjNHQ4In0.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.E8HLmA9pCcNY0A-6HVbK-IAeyBA1ZAicZcSgW8JBhmZj2vyuz03MHTTenePqfXEXP2iQos67ssXZA2sAyfpCDrokt9amtkmrn10hRgetX4q-5-VTZfBhyW7XE2WjHsPjh-c9FiPbpP1HwwjnWQTsnaDeXOQPmUJ6K7FfbOYdqcRAXBP4gPyuqTzdPMRhZIPb-e45Yr7sLYa2Fh5Npq2_ILEspPUP1JFPrvecVMri-8fa8eu3vd4LYR4CRnjAZd50IgIhBDAjP80V5siV8kJrGMoY0b4J5KHXhVhovgZjwHPVdishXuQVAyyhqCQAFACB_WzL6mSp2LXkGW91H0A88A\""
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "A configuration file is needed in order to create a KnowledgeGraphForge session. A configuration can be generated using the notebook [00-Initialization.ipynb](00%20-%20Initialization.ipynb)."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fbluebrain.github.io%2Fnexus%2Fcontexts%2Fresource.json/source\n",
      "https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/neurosciencegraph/datamodels/_/https%3A%2F%2Fbluebrain.github.io%2Fnexus%2Fcontexts%2Fresource.json/source\n",
      "200\n",
      "https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fbbp.neuroshapes.org\n",
      "https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/neurosciencegraph/datamodels/_/https%3A%2F%2Fbbp.neuroshapes.org\n",
      "200\n",
      "https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fneuroshapes.org\n",
      "https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/neurosciencegraph/datamodels/_/https%3A%2F%2Fneuroshapes.org\n",
      "200\n",
      "https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fbluebrain.github.io%2Fnexus%2Fcontexts%2Fresource.json/source\n",
      "https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/neurosciencegraph/datamodels/_/https%3A%2F%2Fbluebrain.github.io%2Fnexus%2Fcontexts%2Fresource.json/source\n",
      "200\n",
      "https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fbluebrain.github.io%2Fnexus%2Fcontexts%2Fresource.json/source\n",
      "https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/bbp/agents/_/https%3A%2F%2Fbluebrain.github.io%2Fnexus%2Fcontexts%2Fresource.json/source\n",
      "200\n"
     ]
    }
   ],
   "source": [
    "forge = KnowledgeGraphForge(\"/Users/mfsy/dev/apps/forked/nexus-forge/examples/configurations/prod-forge-nexus-entity-resolver.yml\",\n",
    "                            token=token,\n",
    "                            bucket=\"dke/myverycoolproj\", \n",
    "                            endpoint=\"https://staging.nexus.ocp.bbp.epfl.ch/v1\",\n",
    "                            debug=True)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "'0.5.3.dev4+g33bc591.d20210331'"
      ]
     },
     "execution_count": 4,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "from kgforge.version import __version__\n",
    "__version__"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Imports"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [],
   "source": [
    "from kgforge.core.commons.strategies import ResolvingStrategy"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Discover scopes, resolvers and targets\n",
    "\n",
    "With the `forge.resolvers()` method, the user can inspect the available scopes, resolvers, and targets.\n",
    "A scope is linked to a data source (directory, store, or URL). Each scope will have at least one resolver, which is an implementation of the Forge Resolver. A resolver can have multiple targets, and it will delimitate the resolution within the resolver's scope."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Available scopes:\n",
      " -  agent :\n",
      "     - resolver:  AgentResolver\n",
      "         - targets:  agents\n",
      " -  entity :\n",
      "     - resolver:  EntityLinkerElasticSearch\n",
      "         - targets:  terms\n",
      " -  ontology :\n",
      "     - resolver:  OntologyResolver\n",
      "         - targets:  terms\n"
     ]
    }
   ],
   "source": [
    "forge.resolvers()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "[('somato', [{'id': 'http://api.brain-map.org/api/v2/data/Structure/1006', 'type': 'Class', 'label': 'Primary somatosensory area, trunk, layer 1', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SSp-tr1', 'prefLabel': 'Primary somatosensory area, trunk, layer 1', 'subClassOf': 'nsg:BrainRegion'}, {'id': 'http://api.brain-map.org/api/v2/data/Structure/1026', 'type': 'Class', 'label': 'Primary somatosensory area, upper limb, layer 6b', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SSp-ul6b', 'prefLabel': 'Primary somatosensory area, upper limb, layer 6b', 'subClassOf': 'nsg:BrainRegion'}, {'id': 'http://api.brain-map.org/api/v2/data/Structure/1030', 'type': 'Class', 'label': 'Primary somatosensory area, lower limb, layer 1', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SSp-ll1', 'prefLabel': 'Primary somatosensory area, lower limb, layer 1', 'subClassOf': 'nsg:BrainRegion'}, {'id': 'http://api.brain-map.org/api/v2/data/Structure/1035', 'type': 'Class', 'label': 'Supplemental somatosensory area, layer 4', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SSs4', 'prefLabel': 'Supplemental somatosensory area, layer 4', 'subClassOf': 'nsg:BrainRegion'}, {'id': 'http://api.brain-map.org/api/v2/data/Structure/1038', 'type': 'Class', 'label': 'Primary somatosensory area, barrel field, layer 6a', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SSp-bfd6a', 'prefLabel': 'Primary somatosensory area, barrel field, layer 6a', 'subClassOf': 'nsg:BrainRegion'}, {'id': 'http://api.brain-map.org/api/v2/data/Structure/1047', 'type': 'Class', 'label': 'Primary somatosensory area, barrel field, layer 4', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SSp-bfd4', 'prefLabel': 'Primary somatosensory area, barrel field, layer 4', 'subClassOf': 'nsg:BrainRegion'}, {'id': 'http://api.brain-map.org/api/v2/data/Structure/1062', 'type': 'Class', 'label': 'Primary somatosensory area, barrel field, layer 6b', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SSp-bfd6b', 'prefLabel': 'Primary somatosensory area, barrel field, layer 6b', 'subClassOf': 'nsg:BrainRegion'}, {'id': 'http://api.brain-map.org/api/v2/data/Structure/1128', 'type': 'Class', 'label': 'Primary somatosensory area, lower limb, layer 5', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SSp-ll5', 'prefLabel': 'Primary somatosensory area, lower limb, layer 5', 'subClassOf': 'nsg:BrainRegion'}, {'id': 'http://api.brain-map.org/api/v2/data/Structure/113', 'type': 'Class', 'label': 'Primary somatosensory area, lower limb, layer 2/3', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SSp-ll2/3', 'prefLabel': 'Primary somatosensory area, lower limb, layer 2/3', 'subClassOf': 'nsg:BrainRegion'}, {'id': 'http://api.brain-map.org/api/v2/data/Structure/12993', 'type': 'Class', 'label': 'Somatosensory areas, layer 1', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SS1', 'prefLabel': 'Somatosensory areas, layer 1', 'subClassOf': 'nsg:BrainRegion'}])]\n",
      "ddddd\n",
      "('somato', [{'id': 'http://api.brain-map.org/api/v2/data/Structure/1006', 'type': 'Class', 'label': 'Primary somatosensory area, trunk, layer 1', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SSp-tr1', 'prefLabel': 'Primary somatosensory area, trunk, layer 1', 'subClassOf': 'nsg:BrainRegion'}, {'id': 'http://api.brain-map.org/api/v2/data/Structure/1026', 'type': 'Class', 'label': 'Primary somatosensory area, upper limb, layer 6b', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SSp-ul6b', 'prefLabel': 'Primary somatosensory area, upper limb, layer 6b', 'subClassOf': 'nsg:BrainRegion'}, {'id': 'http://api.brain-map.org/api/v2/data/Structure/1030', 'type': 'Class', 'label': 'Primary somatosensory area, lower limb, layer 1', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SSp-ll1', 'prefLabel': 'Primary somatosensory area, lower limb, layer 1', 'subClassOf': 'nsg:BrainRegion'}, {'id': 'http://api.brain-map.org/api/v2/data/Structure/1035', 'type': 'Class', 'label': 'Supplemental somatosensory area, layer 4', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SSs4', 'prefLabel': 'Supplemental somatosensory area, layer 4', 'subClassOf': 'nsg:BrainRegion'}, {'id': 'http://api.brain-map.org/api/v2/data/Structure/1038', 'type': 'Class', 'label': 'Primary somatosensory area, barrel field, layer 6a', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SSp-bfd6a', 'prefLabel': 'Primary somatosensory area, barrel field, layer 6a', 'subClassOf': 'nsg:BrainRegion'}, {'id': 'http://api.brain-map.org/api/v2/data/Structure/1047', 'type': 'Class', 'label': 'Primary somatosensory area, barrel field, layer 4', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SSp-bfd4', 'prefLabel': 'Primary somatosensory area, barrel field, layer 4', 'subClassOf': 'nsg:BrainRegion'}, {'id': 'http://api.brain-map.org/api/v2/data/Structure/1062', 'type': 'Class', 'label': 'Primary somatosensory area, barrel field, layer 6b', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SSp-bfd6b', 'prefLabel': 'Primary somatosensory area, barrel field, layer 6b', 'subClassOf': 'nsg:BrainRegion'}, {'id': 'http://api.brain-map.org/api/v2/data/Structure/1128', 'type': 'Class', 'label': 'Primary somatosensory area, lower limb, layer 5', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SSp-ll5', 'prefLabel': 'Primary somatosensory area, lower limb, layer 5', 'subClassOf': 'nsg:BrainRegion'}, {'id': 'http://api.brain-map.org/api/v2/data/Structure/113', 'type': 'Class', 'label': 'Primary somatosensory area, lower limb, layer 2/3', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SSp-ll2/3', 'prefLabel': 'Primary somatosensory area, lower limb, layer 2/3', 'subClassOf': 'nsg:BrainRegion'}, {'id': 'http://api.brain-map.org/api/v2/data/Structure/12993', 'type': 'Class', 'label': 'Somatosensory areas, layer 1', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SS1', 'prefLabel': 'Somatosensory areas, layer 1', 'subClassOf': 'nsg:BrainRegion'}])\n"
     ]
    }
   ],
   "source": [
    "res= forge.resolve(\"somato\", scope=\"ontology\", type=\"Class\", strategy=ResolvingStrategy.ALL_MATCHES)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {},
   "outputs": [],
   "source": [
    "re = forge.resolve(\"EPFL\", scope=\"agent\", strategy=ResolvingStrategy.BEST_MATCH)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {},
   "outputs": [],
   "source": [
    "re"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 12,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>id</th>\n",
       "      <th>type</th>\n",
       "      <th>label</th>\n",
       "      <th>definition</th>\n",
       "      <th>isDefinedBy</th>\n",
       "      <th>notation</th>\n",
       "      <th>prefLabel</th>\n",
       "      <th>subClassOf</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>http://api.brain-map.org/api/v2/data/Structure...</td>\n",
       "      <td>Class</td>\n",
       "      <td>Primary somatosensory area, lower limb, layer 5</td>\n",
       "      <td></td>\n",
       "      <td>http://bbp.epfl.ch/neurosciencegraph/ontologie...</td>\n",
       "      <td>SSp-ll5</td>\n",
       "      <td>Primary somatosensory area, lower limb, layer 5</td>\n",
       "      <td>nsg:BrainRegion</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>http://api.brain-map.org/api/v2/data/Structure...</td>\n",
       "      <td>Class</td>\n",
       "      <td>Primary somatosensory area, lower limb, layer 2/3</td>\n",
       "      <td></td>\n",
       "      <td>http://bbp.epfl.ch/neurosciencegraph/ontologie...</td>\n",
       "      <td>SSp-ll2/3</td>\n",
       "      <td>Primary somatosensory area, lower limb, layer 2/3</td>\n",
       "      <td>nsg:BrainRegion</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>http://api.brain-map.org/api/v2/data/Structure...</td>\n",
       "      <td>Class</td>\n",
       "      <td>Primary somatosensory area, lower limb, layer 1</td>\n",
       "      <td></td>\n",
       "      <td>http://bbp.epfl.ch/neurosciencegraph/ontologie...</td>\n",
       "      <td>SSp-ll1</td>\n",
       "      <td>Primary somatosensory area, lower limb, layer 1</td>\n",
       "      <td>nsg:BrainRegion</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>http://api.brain-map.org/api/v2/data/Structure...</td>\n",
       "      <td>Class</td>\n",
       "      <td>Supplemental somatosensory area, layer 4</td>\n",
       "      <td></td>\n",
       "      <td>http://bbp.epfl.ch/neurosciencegraph/ontologie...</td>\n",
       "      <td>SSs4</td>\n",
       "      <td>Supplemental somatosensory area, layer 4</td>\n",
       "      <td>nsg:BrainRegion</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>http://api.brain-map.org/api/v2/data/Structure...</td>\n",
       "      <td>Class</td>\n",
       "      <td>Primary somatosensory area, barrel field, laye...</td>\n",
       "      <td></td>\n",
       "      <td>http://bbp.epfl.ch/neurosciencegraph/ontologie...</td>\n",
       "      <td>SSp-bfd6a</td>\n",
       "      <td>Primary somatosensory area, barrel field, laye...</td>\n",
       "      <td>nsg:BrainRegion</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>5</th>\n",
       "      <td>http://api.brain-map.org/api/v2/data/Structure...</td>\n",
       "      <td>Class</td>\n",
       "      <td>Primary somatosensory area, barrel field, layer 4</td>\n",
       "      <td></td>\n",
       "      <td>http://bbp.epfl.ch/neurosciencegraph/ontologie...</td>\n",
       "      <td>SSp-bfd4</td>\n",
       "      <td>Primary somatosensory area, barrel field, layer 4</td>\n",
       "      <td>nsg:BrainRegion</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6</th>\n",
       "      <td>http://api.brain-map.org/api/v2/data/Structure...</td>\n",
       "      <td>Class</td>\n",
       "      <td>Primary somatosensory area, barrel field, laye...</td>\n",
       "      <td></td>\n",
       "      <td>http://bbp.epfl.ch/neurosciencegraph/ontologie...</td>\n",
       "      <td>SSp-bfd6b</td>\n",
       "      <td>Primary somatosensory area, barrel field, laye...</td>\n",
       "      <td>nsg:BrainRegion</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>7</th>\n",
       "      <td>http://api.brain-map.org/api/v2/data/Structure...</td>\n",
       "      <td>Class</td>\n",
       "      <td>Primary somatosensory area, trunk, layer 1</td>\n",
       "      <td></td>\n",
       "      <td>http://bbp.epfl.ch/neurosciencegraph/ontologie...</td>\n",
       "      <td>SSp-tr1</td>\n",
       "      <td>Primary somatosensory area, trunk, layer 1</td>\n",
       "      <td>nsg:BrainRegion</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>8</th>\n",
       "      <td>http://api.brain-map.org/api/v2/data/Structure...</td>\n",
       "      <td>Class</td>\n",
       "      <td>Primary somatosensory area, upper limb, layer 6b</td>\n",
       "      <td></td>\n",
       "      <td>http://bbp.epfl.ch/neurosciencegraph/ontologie...</td>\n",
       "      <td>SSp-ul6b</td>\n",
       "      <td>Primary somatosensory area, upper limb, layer 6b</td>\n",
       "      <td>nsg:BrainRegion</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>9</th>\n",
       "      <td>http://api.brain-map.org/api/v2/data/Structure...</td>\n",
       "      <td>Class</td>\n",
       "      <td>Somatosensory areas, layer 1</td>\n",
       "      <td></td>\n",
       "      <td>http://bbp.epfl.ch/neurosciencegraph/ontologie...</td>\n",
       "      <td>SS1</td>\n",
       "      <td>Somatosensory areas, layer 1</td>\n",
       "      <td>nsg:BrainRegion</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "                                                  id   type  \\\n",
       "0  http://api.brain-map.org/api/v2/data/Structure...  Class   \n",
       "1  http://api.brain-map.org/api/v2/data/Structure...  Class   \n",
       "2  http://api.brain-map.org/api/v2/data/Structure...  Class   \n",
       "3  http://api.brain-map.org/api/v2/data/Structure...  Class   \n",
       "4  http://api.brain-map.org/api/v2/data/Structure...  Class   \n",
       "5  http://api.brain-map.org/api/v2/data/Structure...  Class   \n",
       "6  http://api.brain-map.org/api/v2/data/Structure...  Class   \n",
       "7  http://api.brain-map.org/api/v2/data/Structure...  Class   \n",
       "8  http://api.brain-map.org/api/v2/data/Structure...  Class   \n",
       "9  http://api.brain-map.org/api/v2/data/Structure...  Class   \n",
       "\n",
       "                                               label definition  \\\n",
       "0    Primary somatosensory area, lower limb, layer 5              \n",
       "1  Primary somatosensory area, lower limb, layer 2/3              \n",
       "2    Primary somatosensory area, lower limb, layer 1              \n",
       "3           Supplemental somatosensory area, layer 4              \n",
       "4  Primary somatosensory area, barrel field, laye...              \n",
       "5  Primary somatosensory area, barrel field, layer 4              \n",
       "6  Primary somatosensory area, barrel field, laye...              \n",
       "7         Primary somatosensory area, trunk, layer 1              \n",
       "8   Primary somatosensory area, upper limb, layer 6b              \n",
       "9                       Somatosensory areas, layer 1              \n",
       "\n",
       "                                         isDefinedBy   notation  \\\n",
       "0  http://bbp.epfl.ch/neurosciencegraph/ontologie...    SSp-ll5   \n",
       "1  http://bbp.epfl.ch/neurosciencegraph/ontologie...  SSp-ll2/3   \n",
       "2  http://bbp.epfl.ch/neurosciencegraph/ontologie...    SSp-ll1   \n",
       "3  http://bbp.epfl.ch/neurosciencegraph/ontologie...       SSs4   \n",
       "4  http://bbp.epfl.ch/neurosciencegraph/ontologie...  SSp-bfd6a   \n",
       "5  http://bbp.epfl.ch/neurosciencegraph/ontologie...   SSp-bfd4   \n",
       "6  http://bbp.epfl.ch/neurosciencegraph/ontologie...  SSp-bfd6b   \n",
       "7  http://bbp.epfl.ch/neurosciencegraph/ontologie...    SSp-tr1   \n",
       "8  http://bbp.epfl.ch/neurosciencegraph/ontologie...   SSp-ul6b   \n",
       "9  http://bbp.epfl.ch/neurosciencegraph/ontologie...        SS1   \n",
       "\n",
       "                                           prefLabel       subClassOf  \n",
       "0    Primary somatosensory area, lower limb, layer 5  nsg:BrainRegion  \n",
       "1  Primary somatosensory area, lower limb, layer 2/3  nsg:BrainRegion  \n",
       "2    Primary somatosensory area, lower limb, layer 1  nsg:BrainRegion  \n",
       "3           Supplemental somatosensory area, layer 4  nsg:BrainRegion  \n",
       "4  Primary somatosensory area, barrel field, laye...  nsg:BrainRegion  \n",
       "5  Primary somatosensory area, barrel field, layer 4  nsg:BrainRegion  \n",
       "6  Primary somatosensory area, barrel field, laye...  nsg:BrainRegion  \n",
       "7         Primary somatosensory area, trunk, layer 1  nsg:BrainRegion  \n",
       "8   Primary somatosensory area, upper limb, layer 6b  nsg:BrainRegion  \n",
       "9                       Somatosensory areas, layer 1  nsg:BrainRegion  "
      ]
     },
     "execution_count": 12,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "forge.as_dataframe(res)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Terms"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "To find resources using resolver, you can use regex expressions within the provided string."
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### scope\n",
    "Resolve a resource for `female` in the terms."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "[]\n"
     ]
    }
   ],
   "source": [
    "result = forge.resolve(\n",
    "                       [\"diabetes\",\"covid-19\"],\n",
    "                       scope=\"entity\",\n",
    "                       target = \"terms\",\n",
    "                       limit=10,\n",
    "                       threshold=0.8,\n",
    "                       strategy=ResolvingStrategy.EXACT_MATCH\n",
    "                      )"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 21,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "NoneType"
      ]
     },
     "execution_count": 21,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "type(result)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 14,
   "metadata": {},
   "outputs": [
    {
     "ename": "TypeError",
     "evalue": "'NoneType' object is not subscriptable",
     "output_type": "error",
     "traceback": [
      "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
      "\u001b[0;31mTypeError\u001b[0m                                 Traceback (most recent call last)",
      "\u001b[0;32m<ipython-input-14-356ff7b7f793>\u001b[0m in \u001b[0;36m<module>\u001b[0;34m\u001b[0m\n\u001b[0;32m----> 1\u001b[0;31m \u001b[0mforge\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mas_dataframe\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mresult\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m\"diabetes\"\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m",
      "\u001b[0;31mTypeError\u001b[0m: 'NoneType' object is not subscriptable"
     ]
    }
   ],
   "source": [
    "forge.as_dataframe(result[\"diabetes\"])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "{\n",
      "            \"size\": 10,\n",
      "            \"_source\": {\n",
      "                \"exclude\": [\"embedding\"]\n",
      "            },\n",
      "            \"query\": {\n",
      "                \"script_score\": {\n",
      "                    \"query\": {\n",
      "                        \"exists\": {\n",
      "                            \"field\": \"embedding\"\n",
      "                        }\n",
      "                    },\n",
      "                    \"script\": {\n",
      "                        \"source\": \"doc['embedding'].size() == 0 ? 0 : (cosineSimilarity(params.queryVector, doc['embedding'])+1.0) / 2\",\n",
      "                        \"params\": {\n",
      "                            \"queryVector\": [-0.06318674236536026, 0.017056960612535477, -0.05687783658504486, -0.04961063712835312, -0.055770013481378555, 0.07958485931158066, 0.11064236611127853, -0.10723460465669632, 0.12150656431913376, 0.06838510185480118, -0.16287577152252197, 0.0036786971613764763, -0.12537777423858643, 0.02500958926975727, 0.09008166939020157, 0.045686326920986176, 0.07828816771507263, -0.001064969110302627, 0.15681831538677216, 0.13517893850803375, -0.028591299429535866, -0.04068496450781822, 0.05460236594080925, 0.015284581109881401, 0.07718798518180847, 0.009188370779156685, -0.0941006988286972, 0.08962488174438477, -0.026030832901597023, 0.19158291816711426, 0.03038346767425537, 0.08494362235069275, -0.08508966863155365, -0.047578055411577225, -0.12622548639774323, 0.11468279361724854, -0.1808488368988037, 0.1316303014755249, 0.018884902819991112, 0.010770749300718307, 0.022466659545898438, 0.11284452676773071, -0.058591749519109726, 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      "                        }\n",
      "                    }\n",
      "                }\n",
      "            }\n",
      "        }\n",
      "[('0befef0a-134a-455f-8244-c09940fffee0', [Candidate(_validated=False, _synchronized=False, score=1.0, @id='https://sandbox.bluebrainnexus.io/v1/resources/dke/myverycoolproj/_/https://bbp.epfl.ch/dke/kgforge_tests/0befef0a-134a-455f-8244-c09940fffee0', @type='http://schema.org/SoftwareAgent', name='random name 02b7437e-c1f7-401c-990f-cc09cab93125', version='0.0.1', _self='https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fsandbox.bluebrainnexus.io%2Fv1%2Fresources%2Fdke%2Fmyverycoolproj%2F_%2Fhttps%3A%2F%2Fbbp.epfl.ch%2Fdke%2Fkgforge_tests%2F0befef0a-134a-455f-8244-c09940fffee0', _constrainedBy='https://bluebrain.github.io/nexus/schemas/unconstrained.json', _project='https://staging.nexus.ocp.bbp.epfl.ch/v1/projects/dke/myverycoolproj', _rev=1, _deprecated=False, _createdAt='2021-02-13T19:47:12.234520Z', _createdBy='https://staging.nexus.ocp.bbp.epfl.ch/v1/realms/bbp/users/sy', _updatedAt='2021-02-13T19:47:12.234520Z', _updatedBy='https://staging.nexus.ocp.bbp.epfl.ch/v1/realms/bbp/users/sy', _incoming='https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fsandbox.bluebrainnexus.io%2Fv1%2Fresources%2Fdke%2Fmyverycoolproj%2F_%2Fhttps%3A%2F%2Fbbp.epfl.ch%2Fdke%2Fkgforge_tests%2F0befef0a-134a-455f-8244-c09940fffee0/incoming', _outgoing='https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fsandbox.bluebrainnexus.io%2Fv1%2Fresources%2Fdke%2Fmyverycoolproj%2F_%2Fhttps%3A%2F%2Fbbp.epfl.ch%2Fdke%2Fkgforge_tests%2F0befef0a-134a-455f-8244-c09940fffee0/outgoing', _last_action=None, _store_metadata=None), Candidate(_validated=False, _synchronized=False, score=0.7800082, @id='https://sandbox.bluebrainnexus.io/v1/resources/dke/myverycoolproj/_/https://bbp.epfl.ch/dke/kgforge_tests/1e4bd1b0-e0dd-4cd7-9aad-70133eed6955', @type='http://schema.org/SoftwareAgent', name='random name 02b7437e-c1f7-401c-990f-cc09cab93125', version='0.0.1', 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'https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fsandbox.bluebrainnexus.io%2Fv1%2Fresources%2Fdke%2Fmyverycoolproj%2F_%2Fhttps%3A%2F%2Fbbp.epfl.ch%2Fdke%2Fkgforge_tests%2Fc5c2d542-b589-45c5-9572-08978af21d84', '_constrainedBy': 'https://bluebrain.github.io/nexus/schemas/unconstrained.json', '_project': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/projects/dke/myverycoolproj', '_rev': 1, '_deprecated': False, '_createdAt': '2021-02-13T19:48:02.652105Z', '_createdBy': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/realms/bbp/users/sy', '_updatedAt': '2021-02-13T19:48:02.652105Z', '_updatedBy': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/realms/bbp/users/sy', '_incoming': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fsandbox.bluebrainnexus.io%2Fv1%2Fresources%2Fdke%2Fmyverycoolproj%2F_%2Fhttps%3A%2F%2Fbbp.epfl.ch%2Fdke%2Fkgforge_tests%2Fc5c2d542-b589-45c5-9572-08978af21d84/incoming', '_outgoing': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fsandbox.bluebrainnexus.io%2Fv1%2Fresources%2Fdke%2Fmyverycoolproj%2F_%2Fhttps%3A%2F%2Fbbp.epfl.ch%2Fdke%2Fkgforge_tests%2Fc5c2d542-b589-45c5-9572-08978af21d84/outgoing'}, {'score': 0.68226916, '@id': 'https://sandbox.bluebrainnexus.io/v1/resources/dke/myverycoolproj/_/https://bbp.epfl.ch/dke/kgforge_tests/0fc1e9cd-b67c-4876-acb9-8df458d63feb', '@type': 'http://schema.org/SoftwareAgent', 'name': 'random name a136961f-e795-49ed-ab92-30b95b26d5e6', 'version': '0.0.1', '_self': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fsandbox.bluebrainnexus.io%2Fv1%2Fresources%2Fdke%2Fmyverycoolproj%2F_%2Fhttps%3A%2F%2Fbbp.epfl.ch%2Fdke%2Fkgforge_tests%2F0fc1e9cd-b67c-4876-acb9-8df458d63feb', '_constrainedBy': 'https://bluebrain.github.io/nexus/schemas/unconstrained.json', '_project': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/projects/dke/myverycoolproj', '_rev': 1, '_deprecated': False, '_createdAt': '2021-02-13T19:47:32.621396Z', '_createdBy': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/realms/bbp/users/sy', '_updatedAt': '2021-02-13T19:47:32.621396Z', '_updatedBy': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/realms/bbp/users/sy', '_incoming': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fsandbox.bluebrainnexus.io%2Fv1%2Fresources%2Fdke%2Fmyverycoolproj%2F_%2Fhttps%3A%2F%2Fbbp.epfl.ch%2Fdke%2Fkgforge_tests%2F0fc1e9cd-b67c-4876-acb9-8df458d63feb/incoming', '_outgoing': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fsandbox.bluebrainnexus.io%2Fv1%2Fresources%2Fdke%2Fmyverycoolproj%2F_%2Fhttps%3A%2F%2Fbbp.epfl.ch%2Fdke%2Fkgforge_tests%2F0fc1e9cd-b67c-4876-acb9-8df458d63feb/outgoing'}, {'score': 0.68565005, '@id': 'https://sandbox.bluebrainnexus.io/v1/resources/dke/myverycoolproj/_/https://bbp.epfl.ch/dke/kgforge_tests/96773bbd-0f02-4469-8388-01ed3979805a', '@type': 'http://schema.org/SoftwareAgent', 'name': 'random name 02b7437e-c1f7-401c-990f-cc09cab93125', 'version': '0.0.1', '_self': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fsandbox.bluebrainnexus.io%2Fv1%2Fresources%2Fdke%2Fmyverycoolproj%2F_%2Fhttps%3A%2F%2Fbbp.epfl.ch%2Fdke%2Fkgforge_tests%2F96773bbd-0f02-4469-8388-01ed3979805a', '_constrainedBy': 'https://bluebrain.github.io/nexus/schemas/unconstrained.json', '_project': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/projects/dke/myverycoolproj', '_rev': 1, '_deprecated': False, '_createdAt': '2021-02-13T19:47:13.857705Z', '_createdBy': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/realms/bbp/users/sy', '_updatedAt': '2021-02-13T19:47:13.857705Z', '_updatedBy': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/realms/bbp/users/sy', '_incoming': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fsandbox.bluebrainnexus.io%2Fv1%2Fresources%2Fdke%2Fmyverycoolproj%2F_%2Fhttps%3A%2F%2Fbbp.epfl.ch%2Fdke%2Fkgforge_tests%2F96773bbd-0f02-4469-8388-01ed3979805a/incoming', '_outgoing': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fsandbox.bluebrainnexus.io%2Fv1%2Fresources%2Fdke%2Fmyverycoolproj%2F_%2Fhttps%3A%2F%2Fbbp.epfl.ch%2Fdke%2Fkgforge_tests%2F96773bbd-0f02-4469-8388-01ed3979805a/outgoing'}, {'score': 0.6860905, '@id': 'https://sandbox.bluebrainnexus.io/v1/resources/dke/myverycoolproj/_/https://bbp.epfl.ch/dke/kgforge_tests/1647a417-8f7a-46e0-99b4-21ce0b27e44a', '@type': 'http://schema.org/SoftwareAgent', 'name': 'random name b710dfde-68f0-43bb-808d-13a35384317e', 'version': '0.0.1', '_self': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fsandbox.bluebrainnexus.io%2Fv1%2Fresources%2Fdke%2Fmyverycoolproj%2F_%2Fhttps%3A%2F%2Fbbp.epfl.ch%2Fdke%2Fkgforge_tests%2F1647a417-8f7a-46e0-99b4-21ce0b27e44a', '_constrainedBy': 'https://bluebrain.github.io/nexus/schemas/unconstrained.json', '_project': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/projects/dke/myverycoolproj', '_rev': 1, '_deprecated': False, '_createdAt': '2021-02-13T19:47:38.654618Z', '_createdBy': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/realms/bbp/users/sy', '_updatedAt': '2021-02-13T19:47:38.654618Z', '_updatedBy': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/realms/bbp/users/sy', '_incoming': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fsandbox.bluebrainnexus.io%2Fv1%2Fresources%2Fdke%2Fmyverycoolproj%2F_%2Fhttps%3A%2F%2Fbbp.epfl.ch%2Fdke%2Fkgforge_tests%2F1647a417-8f7a-46e0-99b4-21ce0b27e44a/incoming', '_outgoing': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fsandbox.bluebrainnexus.io%2Fv1%2Fresources%2Fdke%2Fmyverycoolproj%2F_%2Fhttps%3A%2F%2Fbbp.epfl.ch%2Fdke%2Fkgforge_tests%2F1647a417-8f7a-46e0-99b4-21ce0b27e44a/outgoing'}, {'score': 0.69775426, '@id': 'https://sandbox.bluebrainnexus.io/v1/resources/dke/myverycoolproj/_/https://bbp.epfl.ch/dke/kgforge_tests/df95cc4c-b99b-4e08-a8e8-b4a4fe722485', '@type': 'http://schema.org/SoftwareAgent', 'name': 'random name 0e67223c-605b-49cb-aaf7-8bdbbb4edebc', 'version': '0.0.1', '_self': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fsandbox.bluebrainnexus.io%2Fv1%2Fresources%2Fdke%2Fmyverycoolproj%2F_%2Fhttps%3A%2F%2Fbbp.epfl.ch%2Fdke%2Fkgforge_tests%2Fdf95cc4c-b99b-4e08-a8e8-b4a4fe722485', '_constrainedBy': 'https://bluebrain.github.io/nexus/schemas/unconstrained.json', '_project': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/projects/dke/myverycoolproj', '_rev': 1, '_deprecated': False, '_createdAt': '2021-02-13T19:47:35.714181Z', '_createdBy': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/realms/bbp/users/sy', '_updatedAt': '2021-02-13T19:47:35.714181Z', '_updatedBy': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/realms/bbp/users/sy', '_incoming': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fsandbox.bluebrainnexus.io%2Fv1%2Fresources%2Fdke%2Fmyverycoolproj%2F_%2Fhttps%3A%2F%2Fbbp.epfl.ch%2Fdke%2Fkgforge_tests%2Fdf95cc4c-b99b-4e08-a8e8-b4a4fe722485/incoming', '_outgoing': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fsandbox.bluebrainnexus.io%2Fv1%2Fresources%2Fdke%2Fmyverycoolproj%2F_%2Fhttps%3A%2F%2Fbbp.epfl.ch%2Fdke%2Fkgforge_tests%2Fdf95cc4c-b99b-4e08-a8e8-b4a4fe722485/outgoing'}, {'score': 0.69894576, '@id': 'https://sandbox.bluebrainnexus.io/v1/resources/dke/myverycoolproj/_/https://bbp.epfl.ch/dke/kgforge_tests/635b6cac-c948-45d1-b258-8d564738635f', '@type': 'http://schema.org/SoftwareAgent', 'name': 'random name 02b7437e-c1f7-401c-990f-cc09cab93125', 'version': '0.0.1', '_self': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fsandbox.bluebrainnexus.io%2Fv1%2Fresources%2Fdke%2Fmyverycoolproj%2F_%2Fhttps%3A%2F%2Fbbp.epfl.ch%2Fdke%2Fkgforge_tests%2F635b6cac-c948-45d1-b258-8d564738635f', '_constrainedBy': 'https://bluebrain.github.io/nexus/schemas/unconstrained.json', '_project': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/projects/dke/myverycoolproj', '_rev': 1, '_deprecated': False, '_createdAt': '2021-02-13T19:47:14.465959Z', '_createdBy': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/realms/bbp/users/sy', '_updatedAt': '2021-02-13T19:47:14.465959Z', '_updatedBy': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/realms/bbp/users/sy', '_incoming': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fsandbox.bluebrainnexus.io%2Fv1%2Fresources%2Fdke%2Fmyverycoolproj%2F_%2Fhttps%3A%2F%2Fbbp.epfl.ch%2Fdke%2Fkgforge_tests%2F635b6cac-c948-45d1-b258-8d564738635f/incoming', '_outgoing': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fsandbox.bluebrainnexus.io%2Fv1%2Fresources%2Fdke%2Fmyverycoolproj%2F_%2Fhttps%3A%2F%2Fbbp.epfl.ch%2Fdke%2Fkgforge_tests%2F635b6cac-c948-45d1-b258-8d564738635f/outgoing'}, {'score': 0.7779727, '@id': 'https://sandbox.bluebrainnexus.io/v1/resources/dke/myverycoolproj/_/https://bbp.epfl.ch/dke/kgforge_tests/9203e600-98de-42fe-aacc-152411970b5c', '@type': 'http://schema.org/SoftwareAgent', 'name': 'random name 02b7437e-c1f7-401c-990f-cc09cab93125', 'version': '0.0.1', '_self': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fsandbox.bluebrainnexus.io%2Fv1%2Fresources%2Fdke%2Fmyverycoolproj%2F_%2Fhttps%3A%2F%2Fbbp.epfl.ch%2Fdke%2Fkgforge_tests%2F9203e600-98de-42fe-aacc-152411970b5c', '_constrainedBy': 'https://bluebrain.github.io/nexus/schemas/unconstrained.json', '_project': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/projects/dke/myverycoolproj', '_rev': 1, '_deprecated': False, '_createdAt': '2021-02-13T19:47:15.100153Z', '_createdBy': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/realms/bbp/users/sy', '_updatedAt': '2021-02-13T19:47:15.100153Z', '_updatedBy': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/realms/bbp/users/sy', '_incoming': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fsandbox.bluebrainnexus.io%2Fv1%2Fresources%2Fdke%2Fmyverycoolproj%2F_%2Fhttps%3A%2F%2Fbbp.epfl.ch%2Fdke%2Fkgforge_tests%2F9203e600-98de-42fe-aacc-152411970b5c/incoming', '_outgoing': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fsandbox.bluebrainnexus.io%2Fv1%2Fresources%2Fdke%2Fmyverycoolproj%2F_%2Fhttps%3A%2F%2Fbbp.epfl.ch%2Fdke%2Fkgforge_tests%2F9203e600-98de-42fe-aacc-152411970b5c/outgoing'}, {'score': 0.7800082, '@id': 'https://sandbox.bluebrainnexus.io/v1/resources/dke/myverycoolproj/_/https://bbp.epfl.ch/dke/kgforge_tests/1e4bd1b0-e0dd-4cd7-9aad-70133eed6955', '@type': 'http://schema.org/SoftwareAgent', 'name': 'random name 02b7437e-c1f7-401c-990f-cc09cab93125', 'version': '0.0.1', '_self': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fsandbox.bluebrainnexus.io%2Fv1%2Fresources%2Fdke%2Fmyverycoolproj%2F_%2Fhttps%3A%2F%2Fbbp.epfl.ch%2Fdke%2Fkgforge_tests%2F1e4bd1b0-e0dd-4cd7-9aad-70133eed6955', '_constrainedBy': 'https://bluebrain.github.io/nexus/schemas/unconstrained.json', '_project': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/projects/dke/myverycoolproj', '_rev': 1, '_deprecated': False, '_createdAt': '2021-02-13T19:47:12.880466Z', '_createdBy': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/realms/bbp/users/sy', '_updatedAt': '2021-02-13T19:47:12.880466Z', '_updatedBy': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/realms/bbp/users/sy', '_incoming': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fsandbox.bluebrainnexus.io%2Fv1%2Fresources%2Fdke%2Fmyverycoolproj%2F_%2Fhttps%3A%2F%2Fbbp.epfl.ch%2Fdke%2Fkgforge_tests%2F1e4bd1b0-e0dd-4cd7-9aad-70133eed6955/incoming', '_outgoing': 'https://staging.nexus.ocp.bbp.epfl.ch/v1/resources/dke/myverycoolproj/_/https%3A%2F%2Fsandbox.bluebrainnexus.io%2Fv1%2Fresources%2Fdke%2Fmyverycoolproj%2F_%2Fhttps%3A%2F%2Fbbp.epfl.ch%2Fdke%2Fkgforge_tests%2F1e4bd1b0-e0dd-4cd7-9aad-70133eed6955/outgoing'}])\n"
     ]
    }
   ],
   "source": [
    "result = forge.resolve(\"0befef0a-134a-455f-8244-c09940fffee0\",\n",
    "                       scope=\"entity\",\n",
    "                       target = \"terms\",\n",
    "                       limit=10,\n",
    "                       threshold=1.0,\n",
    "                       strategy=ResolvingStrategy.ALL_MATCHES\n",
    "                      )"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "../../configurations/entitylinking-resolver/entitylinking-mapper-es.hjson\n"
     ]
    }
   ],
   "source": [
    "!ls ../../configurations/entitylinking-resolver/entitylinking-mapper-es.hjson\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": 15,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "list"
      ]
     },
     "execution_count": 15,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "type(result)\n",
    "\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 18,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "[Resource(_last_action=None, _validated=False, _synchronized=False, _store_metadata=None, id='https://sandbox.bluebrainnexus.io/v1/resources/dke/myverycoolproj/_/https://bbp.epfl.ch/dke/kgforge_tests/cde04474-e9a1-4f36-8426-f6c6e316e9d0', type='http://schema.org/SoftwareAgent', score=0.67232597),\n",
       " Resource(_last_action=None, _validated=False, _synchronized=False, _store_metadata=None, id='https://sandbox.bluebrainnexus.io/v1/resources/dke/myverycoolproj/_/https://bbp.epfl.ch/dke/kgforge_tests/c5c2d542-b589-45c5-9572-08978af21d84', type='http://schema.org/SoftwareAgent', score=0.67268145),\n",
       " Resource(_last_action=None, _validated=False, _synchronized=False, _store_metadata=None, id='https://sandbox.bluebrainnexus.io/v1/resources/dke/myverycoolproj/_/https://bbp.epfl.ch/dke/kgforge_tests/0fc1e9cd-b67c-4876-acb9-8df458d63feb', type='http://schema.org/SoftwareAgent', score=0.68226916),\n",
       " Resource(_last_action=None, _validated=False, _synchronized=False, _store_metadata=None, id='https://sandbox.bluebrainnexus.io/v1/resources/dke/myverycoolproj/_/https://bbp.epfl.ch/dke/kgforge_tests/96773bbd-0f02-4469-8388-01ed3979805a', type='http://schema.org/SoftwareAgent', score=0.68565005),\n",
       " Resource(_last_action=None, _validated=False, _synchronized=False, _store_metadata=None, id='https://sandbox.bluebrainnexus.io/v1/resources/dke/myverycoolproj/_/https://bbp.epfl.ch/dke/kgforge_tests/1647a417-8f7a-46e0-99b4-21ce0b27e44a', type='http://schema.org/SoftwareAgent', score=0.6860905),\n",
       " Resource(_last_action=None, _validated=False, _synchronized=False, _store_metadata=None, id='https://sandbox.bluebrainnexus.io/v1/resources/dke/myverycoolproj/_/https://bbp.epfl.ch/dke/kgforge_tests/df95cc4c-b99b-4e08-a8e8-b4a4fe722485', type='http://schema.org/SoftwareAgent', score=0.69775426),\n",
       " Resource(_last_action=None, _validated=False, _synchronized=False, _store_metadata=None, id='https://sandbox.bluebrainnexus.io/v1/resources/dke/myverycoolproj/_/https://bbp.epfl.ch/dke/kgforge_tests/635b6cac-c948-45d1-b258-8d564738635f', type='http://schema.org/SoftwareAgent', score=0.69894576),\n",
       " Resource(_last_action=None, _validated=False, _synchronized=False, _store_metadata=None, id='https://sandbox.bluebrainnexus.io/v1/resources/dke/myverycoolproj/_/https://bbp.epfl.ch/dke/kgforge_tests/9203e600-98de-42fe-aacc-152411970b5c', type='http://schema.org/SoftwareAgent', score=0.7779727),\n",
       " Resource(_last_action=None, _validated=False, _synchronized=False, _store_metadata=None, id='https://sandbox.bluebrainnexus.io/v1/resources/dke/myverycoolproj/_/https://bbp.epfl.ch/dke/kgforge_tests/1e4bd1b0-e0dd-4cd7-9aad-70133eed6955', type='http://schema.org/SoftwareAgent', score=0.7800082),\n",
       " Resource(_last_action=None, _validated=False, _synchronized=False, _store_metadata=None, id='https://sandbox.bluebrainnexus.io/v1/resources/dke/myverycoolproj/_/https://bbp.epfl.ch/dke/kgforge_tests/0befef0a-134a-455f-8244-c09940fffee0', type='http://schema.org/SoftwareAgent', score=1.0)]"
      ]
     },
     "execution_count": 18,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "result"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 12,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
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       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
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       "      <th>0</th>\n",
       "      <td>https://sandbox.bluebrainnexus.io/v1/resources...</td>\n",
       "      <td>http://schema.org/SoftwareAgent</td>\n",
       "      <td>0.672326</td>\n",
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       "    <tr>\n",
       "      <th>1</th>\n",
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       "      <td>https://sandbox.bluebrainnexus.io/v1/resources...</td>\n",
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       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>https://sandbox.bluebrainnexus.io/v1/resources...</td>\n",
       "      <td>http://schema.org/SoftwareAgent</td>\n",
       "      <td>0.685650</td>\n",
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       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>https://sandbox.bluebrainnexus.io/v1/resources...</td>\n",
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       "      <td>0.686091</td>\n",
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       "    <tr>\n",
       "      <th>5</th>\n",
       "      <td>https://sandbox.bluebrainnexus.io/v1/resources...</td>\n",
       "      <td>http://schema.org/SoftwareAgent</td>\n",
       "      <td>0.697754</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6</th>\n",
       "      <td>https://sandbox.bluebrainnexus.io/v1/resources...</td>\n",
       "      <td>http://schema.org/SoftwareAgent</td>\n",
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       "      <th>7</th>\n",
       "      <td>https://sandbox.bluebrainnexus.io/v1/resources...</td>\n",
       "      <td>http://schema.org/SoftwareAgent</td>\n",
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       "    <tr>\n",
       "      <th>8</th>\n",
       "      <td>https://sandbox.bluebrainnexus.io/v1/resources...</td>\n",
       "      <td>http://schema.org/SoftwareAgent</td>\n",
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      "text/plain": [
       "                                                  id  \\\n",
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       "1  https://sandbox.bluebrainnexus.io/v1/resources...   \n",
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       "5  https://sandbox.bluebrainnexus.io/v1/resources...   \n",
       "6  https://sandbox.bluebrainnexus.io/v1/resources...   \n",
       "7  https://sandbox.bluebrainnexus.io/v1/resources...   \n",
       "8  https://sandbox.bluebrainnexus.io/v1/resources...   \n",
       "\n",
       "                              type     score  \n",
       "0  http://schema.org/SoftwareAgent  0.672326  \n",
       "1  http://schema.org/SoftwareAgent  0.672681  \n",
       "2  http://schema.org/SoftwareAgent  0.682269  \n",
       "3  http://schema.org/SoftwareAgent  0.685650  \n",
       "4  http://schema.org/SoftwareAgent  0.686091  \n",
       "5  http://schema.org/SoftwareAgent  0.697754  \n",
       "6  http://schema.org/SoftwareAgent  0.698946  \n",
       "7  http://schema.org/SoftwareAgent  0.777973  \n",
       "8  http://schema.org/SoftwareAgent  0.780008  "
      ]
     },
     "execution_count": 12,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "forge.as_dataframe(result)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": 18,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "../../configurations/entitylinking-resolver/entitylinking-mapper.hjson\n"
     ]
    }
   ],
   "source": [
    "!ls ../../configurations/entitylinking-resolver/entitylinking-mapper.hjson\n"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### target"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 44,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "[{'id': 'http://api.brain-map.org/api/v2/data/Structure/1070', 'type': 'Class', 'label': 'Primary somatosensory area, barrel field, layer 5', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SSp-bfd5', 'prefLabel': 'Primary somatosensory area, barrel field, layer 5', 'subClassOf': 'nsg:BrainRegion'}, {'id': 'http://api.brain-map.org/api/v2/data/Structure/1086', 'type': 'Class', 'label': 'Primary somatosensory area, trunk, layer 4', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SSp-tr4', 'prefLabel': 'Primary somatosensory area, trunk, layer 4', 'subClassOf': 'nsg:BrainRegion'}, {'id': 'http://api.brain-map.org/api/v2/data/Structure/1090', 'type': 'Class', 'label': 'Supplemental somatosensory area, layer 5', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SSs5', 'prefLabel': 'Supplemental somatosensory area, layer 5', 'subClassOf': 'nsg:BrainRegion'}, {'id': 'http://api.brain-map.org/api/v2/data/Structure/1094', 'type': 'Class', 'label': 'Primary somatosensory area, lower limb, layer 4', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SSp-ll4', 'prefLabel': 'Primary somatosensory area, lower limb, layer 4', 'subClassOf': 'nsg:BrainRegion'}, {'id': 'http://api.brain-map.org/api/v2/data/Structure/1102', 'type': 'Class', 'label': 'Primary somatosensory area, mouth, layer 6a', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SSp-m6a', 'prefLabel': 'Primary somatosensory area, mouth, layer 6a', 'subClassOf': 'nsg:BrainRegion'}, {'id': 'http://api.brain-map.org/api/v2/data/Structure/1111', 'type': 'Class', 'label': 'Primary somatosensory area, trunk, layer 5', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SSp-tr5', 'prefLabel': 'Primary somatosensory area, trunk, layer 5', 'subClassOf': 'nsg:BrainRegion'}, {'id': 'http://api.brain-map.org/api/v2/data/Structure/1128', 'type': 'Class', 'label': 'Primary somatosensory area, lower limb, layer 5', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SSp-ll5', 'prefLabel': 'Primary somatosensory area, lower limb, layer 5', 'subClassOf': 'nsg:BrainRegion'}, {'id': 'http://api.brain-map.org/api/v2/data/Structure/113', 'type': 'Class', 'label': 'Primary somatosensory area, lower limb, layer 2/3', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SSp-ll2/3', 'prefLabel': 'Primary somatosensory area, lower limb, layer 2/3', 'subClassOf': 'nsg:BrainRegion'}, {'id': 'http://api.brain-map.org/api/v2/data/Structure/2', 'type': 'Class', 'label': 'Primary somatosensory area, mouth, layer 6b', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SSp-m6b', 'prefLabel': 'Primary somatosensory area, mouth, layer 6b', 'subClassOf': 'nsg:BrainRegion'}, {'id': 'http://api.brain-map.org/api/v2/data/Structure/201', 'type': 'Class', 'label': 'Primary somatosensory area, barrel field, layer 2/3', 'isDefinedBy': 'http://bbp.epfl.ch/neurosciencegraph/ontologies/mba', 'notation': 'SSp-bfd2/3', 'prefLabel': 'Primary somatosensory area, barrel field, layer 2/3', 'subClassOf': 'nsg:BrainRegion'}]\n"
     ]
    }
   ],
   "source": [
    "b = forge.resolve(\"somatosensory\", scope=\"ontology\", target=\"terms\", strategy=ResolvingStrategy.ALL_MATCHES)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 46,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
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       "    .dataframe tbody tr th {\n",
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       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>id</th>\n",
       "      <th>type</th>\n",
       "      <th>label</th>\n",
       "      <th>definition</th>\n",
       "      <th>isDefinedBy</th>\n",
       "      <th>notation</th>\n",
       "      <th>prefLabel</th>\n",
       "      <th>subClassOf</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>http://api.brain-map.org/api/v2/data/Structure...</td>\n",
       "      <td>Class</td>\n",
       "      <td>Primary somatosensory area, barrel field, layer 5</td>\n",
       "      <td></td>\n",
       "      <td>http://bbp.epfl.ch/neurosciencegraph/ontologie...</td>\n",
       "      <td>SSp-bfd5</td>\n",
       "      <td>Primary somatosensory area, barrel field, layer 5</td>\n",
       "      <td>nsg:BrainRegion</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>http://api.brain-map.org/api/v2/data/Structure...</td>\n",
       "      <td>Class</td>\n",
       "      <td>Primary somatosensory area, trunk, layer 4</td>\n",
       "      <td></td>\n",
       "      <td>http://bbp.epfl.ch/neurosciencegraph/ontologie...</td>\n",
       "      <td>SSp-tr4</td>\n",
       "      <td>Primary somatosensory area, trunk, layer 4</td>\n",
       "      <td>nsg:BrainRegion</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>http://api.brain-map.org/api/v2/data/Structure...</td>\n",
       "      <td>Class</td>\n",
       "      <td>Supplemental somatosensory area, layer 5</td>\n",
       "      <td></td>\n",
       "      <td>http://bbp.epfl.ch/neurosciencegraph/ontologie...</td>\n",
       "      <td>SSs5</td>\n",
       "      <td>Supplemental somatosensory area, layer 5</td>\n",
       "      <td>nsg:BrainRegion</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>http://api.brain-map.org/api/v2/data/Structure...</td>\n",
       "      <td>Class</td>\n",
       "      <td>Primary somatosensory area, lower limb, layer 4</td>\n",
       "      <td></td>\n",
       "      <td>http://bbp.epfl.ch/neurosciencegraph/ontologie...</td>\n",
       "      <td>SSp-ll4</td>\n",
       "      <td>Primary somatosensory area, lower limb, layer 4</td>\n",
       "      <td>nsg:BrainRegion</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>http://api.brain-map.org/api/v2/data/Structure...</td>\n",
       "      <td>Class</td>\n",
       "      <td>Primary somatosensory area, mouth, layer 6a</td>\n",
       "      <td></td>\n",
       "      <td>http://bbp.epfl.ch/neurosciencegraph/ontologie...</td>\n",
       "      <td>SSp-m6a</td>\n",
       "      <td>Primary somatosensory area, mouth, layer 6a</td>\n",
       "      <td>nsg:BrainRegion</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>5</th>\n",
       "      <td>http://api.brain-map.org/api/v2/data/Structure...</td>\n",
       "      <td>Class</td>\n",
       "      <td>Primary somatosensory area, trunk, layer 5</td>\n",
       "      <td></td>\n",
       "      <td>http://bbp.epfl.ch/neurosciencegraph/ontologie...</td>\n",
       "      <td>SSp-tr5</td>\n",
       "      <td>Primary somatosensory area, trunk, layer 5</td>\n",
       "      <td>nsg:BrainRegion</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6</th>\n",
       "      <td>http://api.brain-map.org/api/v2/data/Structure...</td>\n",
       "      <td>Class</td>\n",
       "      <td>Primary somatosensory area, lower limb, layer 5</td>\n",
       "      <td></td>\n",
       "      <td>http://bbp.epfl.ch/neurosciencegraph/ontologie...</td>\n",
       "      <td>SSp-ll5</td>\n",
       "      <td>Primary somatosensory area, lower limb, layer 5</td>\n",
       "      <td>nsg:BrainRegion</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>7</th>\n",
       "      <td>http://api.brain-map.org/api/v2/data/Structure...</td>\n",
       "      <td>Class</td>\n",
       "      <td>Primary somatosensory area, lower limb, layer 2/3</td>\n",
       "      <td></td>\n",
       "      <td>http://bbp.epfl.ch/neurosciencegraph/ontologie...</td>\n",
       "      <td>SSp-ll2/3</td>\n",
       "      <td>Primary somatosensory area, lower limb, layer 2/3</td>\n",
       "      <td>nsg:BrainRegion</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>8</th>\n",
       "      <td>http://api.brain-map.org/api/v2/data/Structure/2</td>\n",
       "      <td>Class</td>\n",
       "      <td>Primary somatosensory area, mouth, layer 6b</td>\n",
       "      <td></td>\n",
       "      <td>http://bbp.epfl.ch/neurosciencegraph/ontologie...</td>\n",
       "      <td>SSp-m6b</td>\n",
       "      <td>Primary somatosensory area, mouth, layer 6b</td>\n",
       "      <td>nsg:BrainRegion</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>9</th>\n",
       "      <td>http://api.brain-map.org/api/v2/data/Structure...</td>\n",
       "      <td>Class</td>\n",
       "      <td>Primary somatosensory area, barrel field, laye...</td>\n",
       "      <td></td>\n",
       "      <td>http://bbp.epfl.ch/neurosciencegraph/ontologie...</td>\n",
       "      <td>SSp-bfd2/3</td>\n",
       "      <td>Primary somatosensory area, barrel field, laye...</td>\n",
       "      <td>nsg:BrainRegion</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "                                                  id   type  \\\n",
       "0  http://api.brain-map.org/api/v2/data/Structure...  Class   \n",
       "1  http://api.brain-map.org/api/v2/data/Structure...  Class   \n",
       "2  http://api.brain-map.org/api/v2/data/Structure...  Class   \n",
       "3  http://api.brain-map.org/api/v2/data/Structure...  Class   \n",
       "4  http://api.brain-map.org/api/v2/data/Structure...  Class   \n",
       "5  http://api.brain-map.org/api/v2/data/Structure...  Class   \n",
       "6  http://api.brain-map.org/api/v2/data/Structure...  Class   \n",
       "7  http://api.brain-map.org/api/v2/data/Structure...  Class   \n",
       "8   http://api.brain-map.org/api/v2/data/Structure/2  Class   \n",
       "9  http://api.brain-map.org/api/v2/data/Structure...  Class   \n",
       "\n",
       "                                               label definition  \\\n",
       "0  Primary somatosensory area, barrel field, layer 5              \n",
       "1         Primary somatosensory area, trunk, layer 4              \n",
       "2           Supplemental somatosensory area, layer 5              \n",
       "3    Primary somatosensory area, lower limb, layer 4              \n",
       "4        Primary somatosensory area, mouth, layer 6a              \n",
       "5         Primary somatosensory area, trunk, layer 5              \n",
       "6    Primary somatosensory area, lower limb, layer 5              \n",
       "7  Primary somatosensory area, lower limb, layer 2/3              \n",
       "8        Primary somatosensory area, mouth, layer 6b              \n",
       "9  Primary somatosensory area, barrel field, laye...              \n",
       "\n",
       "                                         isDefinedBy    notation  \\\n",
       "0  http://bbp.epfl.ch/neurosciencegraph/ontologie...    SSp-bfd5   \n",
       "1  http://bbp.epfl.ch/neurosciencegraph/ontologie...     SSp-tr4   \n",
       "2  http://bbp.epfl.ch/neurosciencegraph/ontologie...        SSs5   \n",
       "3  http://bbp.epfl.ch/neurosciencegraph/ontologie...     SSp-ll4   \n",
       "4  http://bbp.epfl.ch/neurosciencegraph/ontologie...     SSp-m6a   \n",
       "5  http://bbp.epfl.ch/neurosciencegraph/ontologie...     SSp-tr5   \n",
       "6  http://bbp.epfl.ch/neurosciencegraph/ontologie...     SSp-ll5   \n",
       "7  http://bbp.epfl.ch/neurosciencegraph/ontologie...   SSp-ll2/3   \n",
       "8  http://bbp.epfl.ch/neurosciencegraph/ontologie...     SSp-m6b   \n",
       "9  http://bbp.epfl.ch/neurosciencegraph/ontologie...  SSp-bfd2/3   \n",
       "\n",
       "                                           prefLabel       subClassOf  \n",
       "0  Primary somatosensory area, barrel field, layer 5  nsg:BrainRegion  \n",
       "1         Primary somatosensory area, trunk, layer 4  nsg:BrainRegion  \n",
       "2           Supplemental somatosensory area, layer 5  nsg:BrainRegion  \n",
       "3    Primary somatosensory area, lower limb, layer 4  nsg:BrainRegion  \n",
       "4        Primary somatosensory area, mouth, layer 6a  nsg:BrainRegion  \n",
       "5         Primary somatosensory area, trunk, layer 5  nsg:BrainRegion  \n",
       "6    Primary somatosensory area, lower limb, layer 5  nsg:BrainRegion  \n",
       "7  Primary somatosensory area, lower limb, layer 2/3  nsg:BrainRegion  \n",
       "8        Primary somatosensory area, mouth, layer 6b  nsg:BrainRegion  \n",
       "9  Primary somatosensory area, barrel field, laye...  nsg:BrainRegion  "
      ]
     },
     "execution_count": 46,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "forge.as_dataframe(b)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### type"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "scrolled": true
   },
   "outputs": [],
   "source": [
    "print(forge.resolve(\"female\", scope=\"terms\", type=\"Class\"))"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Entity"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### scope\n",
    "Resolving a resource for `EPFL` in the entities."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 33,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "[{'id': 'https://bbp.epfl.ch/neurosciencegraph/data/persons/287b93c3-40f9-42d2-9d77-b16bc536eb8a', 'type': ['Person', 'Agent'], 'familyName': 'Malcher Lopez', 'givenName': 'Renato', 'name': None}]\n"
     ]
    }
   ],
   "source": [
    "epfl = forge.resolve(\"Malcher Lopez\", scope=\"agent\", strategy=ResolvingStrategy.ALL_MATCHES)\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 34,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "kgforge.core.resource.Resource"
      ]
     },
     "execution_count": 34,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "type(epfl)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 37,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>id</th>\n",
       "      <th>type</th>\n",
       "      <th>familyName</th>\n",
       "      <th>givenName</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>https://bbp.epfl.ch/neurosciencegraph/data/per...</td>\n",
       "      <td>[Person, Agent]</td>\n",
       "      <td>Malcher Lopez</td>\n",
       "      <td>Renato</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "                                                  id             type  \\\n",
       "0  https://bbp.epfl.ch/neurosciencegraph/data/per...  [Person, Agent]   \n",
       "\n",
       "      familyName givenName  \n",
       "0  Malcher Lopez    Renato  "
      ]
     },
     "execution_count": 37,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "forge.as_dataframe([epfl])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": 35,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "{\n",
      "    id: https://bbp.epfl.ch/neurosciencegraph/data/persons/287b93c3-40f9-42d2-9d77-b16bc536eb8a\n",
      "    type:\n",
      "    [\n",
      "        Person\n",
      "        Agent\n",
      "    ]\n",
      "    familyName: Malcher Lopez\n",
      "    givenName: Renato\n",
      "}\n"
     ]
    }
   ],
   "source": [
    "print(epfl)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### target"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 32,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "[{'id': 'https://bbp.epfl.ch/neurosciencegraph/data/persons/287b93c3-40f9-42d2-9d77-b16bc536eb8a', 'type': ['Agent', 'Person'], 'familyName': 'Malcher Lopez', 'givenName': 'Renato', 'name': None}]\n"
     ]
    }
   ],
   "source": [
    "p = forge.resolve(\"Malcher Lopez\", scope=\"agent\", target=\"agents\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### type"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "print(forge.resolve(\"EPFL\", scope=\"entities\", type=\"Organization\"))"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Strategies"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Different strategies can be used to resolve terms. \n",
    "\n",
    "In the following example, the missing 'e' at the end is intended for the demonstration."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "text = \"mal\""
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### best match"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "The default applied strategy is `strategy=ResolvingStrategy.BEST_MATCH`."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "print(forge.resolve(text, scope=\"terms\"))"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### exact match"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "print(forge.resolve(text, scope=\"terms\", strategy=ResolvingStrategy.EXACT_MATCH))"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### fuzzy match (all matches)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "The result list is ordered by matching relevance."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "results = forge.resolve(text, scope=\"terms\", strategy=ResolvingStrategy.ALL_MATCHES, limit=3)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "type(results)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "len(results)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "type(results[0])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "print(*results, sep=\"\\n\")"
   ]
  }
 ],
 "metadata": {
  "kernelspec": {
   "display_name": "Python (entity_linking)",
   "language": "python",
   "name": "entity_linking"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
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 },
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