Initialize a new project directory
pixi init

# Add Python 3.12 and some useful packages
pixi add python=3.12 pip click graphviz pandas numpy matplotlib clingo imagemagick

# Install booleannet
pixi run pip install --upgrade booleannet

# Install pyboolnet
pixi run pip install git+https://github.com/BooleanNet/pyboolnet

# Install pystablemotifs
pixi run pip install git+https://github.com/BooleanNet/pystablemotifs

# On some system you need to run dot -c to initialize graphviz
pixi run dot -c