Figure Key
============

This document indicates where the raw data for each Figure panel can be found, and which script was used to generate the data.  Figures were typically made using Rmarkdown files and modified if needed in Adobe Illustrator.  The figures listed below are the raw figure, finalized figures are in the combined illustrator file in this folder.

| Figure | Script | Figure |
| ------ | ------ | ------ |
| Figure 1A | NA | NA (Schematic) |
| Figure 1B | ⁨Mouse Data⁩/CLAMS B6-HFD-Rapamycin/clams-analysis.Rmd | activity-barplot-1.pdf |
| Figure 1C | ⁨Mouse Data⁩/CLAMS B6-HFD-Rapamycin/clams-analysis.Rmd | vo2-barplot-1.pdf |
| Figure 1D | Mouse Data⁩/Muscle Tsc1 Knockout⁩/mTSC HFD CLAMS⁩mTSC-CLAMS-analysis.Rmd | heat-production-2.pdf |
| Figure 1E | Mouse Data⁩/Muscle Tsc1 Knockout⁩/mTSC HFD CLAMS⁩mTSC-CLAMS-analysis.Rmd | activity-summarized-data-2.pdf |
| Figure 1F | Mouse Data⁩/Muscle Tsc1 Knockout⁩/mTSC HFD CLAMS⁩mTSC-CLAMS-analysis.Rmd | rer-summarized-data-2.pdf |
| Figure 1G | Mouse Data⁩/Muscle Tsc1 Knockout⁩/mTSC HFD CLAMS⁩mTSC-CLAMS-analysis.Rmd | cho-summarized-data-2.pdf |
| Figure 1H | Mouse Data⁩/Muscle Tsc1 Knockout⁩/mTSC HFD CLAMS⁩mTSC-CLAMS-analysis.Rmd | lipid-summarized-data-2.pdf |
| Figure 1G | ⁨Mouse Data⁩/Muscle Tsc1 Knockout⁩/Food Intake Analysis.Rmd | weekly-intake-plots-4.pdf
| Figure 2A | ⁨Mouse Data⁩/⁨Muscle Tsc1 Knockout/⁨NCD/mTSC1_longitudinal_echo_mri_analysis.Rmd | scatterplot-body-weight-weekly-1⁩.pdf |
| Figure 2B | ⁨Mouse Data⁩/⁨Muscle Tsc1 Knockout/⁨NCD/mTSC1_longitudinal_echo_mri_analysis.Rmd | scatterplot-fat-mass-weekly-1⁩.pdf |
| Figure 2C | Mouse Data⁩/⁨Muscle Tsc1 Knockout/⁨NCD/mTSC1_longitudinal_echo_mri_analysis.Rmd | scatterplot-lean-mass-weekly-1⁩.pdf |
| Figure 2D | Mouse Data⁩/Muscle Tsc1 Knockout⁩/NCD⁩/mTSC1-sac-data.Rmd | wat-weights-1.pdf⁩ |
| Figure 2E | Mouse Data⁩/⁨Muscle Tsc1 Knockout⁩/ITT/itt-analysis.Rmd | itt-lineplot-2.pdf |
| Figure 2F | Mouse Data/Muscle Tsc1 Knockout/Glucose Clamps.Rmd | clamp-summary-1.pdf⁩ |
| Figure 2G | Mouse Data/Muscle Tsc1 Knockout/Glucose Clamps.Rmd | tissue-glucose-uptake-summary-1.pdf⁩ |
| Figure 3A | Mouse Data⁩/Muscle Tsc1 Knockout⁩/HFD/Body Composition/body-weight-analysis.Rmd | body-weight-scatterplot-3.pdf |
| Figure 3B | Mouse Data⁩/Muscle Tsc1 Knockout⁩/HFD/Body Composition/body-weight-analysis.Rmd | fat-mass-scatterplot-3.pdf |
| Figure 3C | Mouse Data⁩/Muscle Tsc1 Knockout⁩/HFD/Body Composition/body-weight-analysis.Rmd | lean-mass-scatterplot-3.pdf |
| Figure 3D | Mouse Data⁩/Muscle Tsc1 Knockout⁩/HFD⁩/Sacrifice Analysis⁩m/TSC1-sac-data.Rmd | wat-weights-2.pdf |
| Figure 3E | Mouse Data⁩/Muscle Tsc1 Knockout⁩/HFD⁩/ITT/itt-analysis_mTSC1-HFD.Rmd | wat-weights-2.pdf |
| Figure 4A | ⁨RNAseq⁩/Muscle Tsc1 Knockout/scripts⁩/barplots.Rmd | aa_transporters-barplot.pdf |
| Figure 4B | RNAseq⁩/Muscle Tsc1 Knockout/scripts⁩/barplots.Rmd | fabp_cd36-barplot.pdf |
| Figure 4C | RNAseq⁩/Muscle Tsc1 Knockout/scripts⁩/barplots.Rmd | fiber_markers-barplot.pdf | 
| Figure 4D | NA | Image | 
| Figure 4E | RNAseq⁩/Muscle Tsc1 Knockout/scripts⁩/barplots.Rmd | ca-cycling.pdf | 
| Figure 4F | NA | Image | 
| Figure 4C | RNAseq⁩/Muscle Tsc1 Knockout/scripts⁩/barplots.Rmd | Sln-barplot.pdf | 
| Figure 5 | Mouse Data⁩/Muscle Tsc1 Knockout/mouse-aging-analysis.Rmd | fitting-mck-controls-combined-ggsurvplot-1.pdf |