[build-system]
requires = ["setuptools>=61.0", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "networkx-mcp-server"
version = "3.1.0"
description = "NetworkX MCP Server - Graph analysis in your AI conversations"
readme = "README.md"
license = {text = "MIT"}
keywords = ["networkx", "graph", "analysis", "mcp", "ai", "claude", "visualization", "network", "centrality", "community", "workflow"]
authors = [{name = "Bright Liu", email = "brightliu@college.harvard.edu"}]
maintainers = [{name = "Bright Liu", email = "brightliu@college.harvard.edu"}]
classifiers = [
    "Development Status :: 5 - Production/Stable",
    "Intended Audience :: Developers",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: MIT License",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Topic :: Scientific/Engineering :: Information Analysis",
    "Topic :: Scientific/Engineering :: Visualization",
    "Topic :: Software Development :: Libraries :: Python Modules",
    "Topic :: Internet :: WWW/HTTP :: Dynamic Content",
    "Environment :: Console",
    "Operating System :: OS Independent",
]
requires-python = ">=3.11"
dependencies = [
    "networkx>=3.0",
    "numpy>=1.21.0",  # Required for NetworkX and core algorithms
    "matplotlib>=3.5.0",  # Required for graph visualization
    "requests>=2.28.0",  # For API calls to CrossRef, ORCID, etc.
    "bibtexparser>=1.4.0,<2.0",  # For BibTeX parsing and generation (v2 has incompatible API)
    "psutil>=5.9.0",  # For memory monitoring in graph cache and health checks
]

[project.optional-dependencies]
# Development dependencies
dev = [
    "pytest>=7.0.0",
    "pytest-asyncio>=0.24.0",
    "pytest-cov>=4.0.0",  # For coverage testing
    "pytest-benchmark>=4.0.0",  # For performance benchmarking
    "coverage>=7.0.0",  # For coverage reporting
    "ruff==0.12.10",  # Pinned to match .pre-commit-config.yaml
    "mypy>=1.13.0",  # Type checking
    "bandit>=1.8.0",  # Security scanning
    "pre-commit>=4.0.0",  # Git hooks
    "uv>=0.5.0",  # Fast package manager
    "pytest-timeout>=2.0.0",  # For --timeout in pytest addopts
    "hypothesis>=6.0.0",  # For property-based testing
    "types-requests>=2.28.0",  # Type stubs for requests
    "scipy>=1.7.0",  # Required by NetworkX for pagerank + Kamada-Kawai layout
]

[project.urls]
Homepage = "https://github.com/Bright-L01/networkx-mcp-server"
Repository = "https://github.com/Bright-L01/networkx-mcp-server"
Issues = "https://github.com/Bright-L01/networkx-mcp-server/issues"

[project.scripts]
networkx-mcp = "networkx_mcp.server:main"  # NetworkX MCP Server

[tool.setuptools.packages.find]
where = ["src"]
include = ["networkx_mcp*"]

[tool.ruff]
line-length = 88
target-version = "py311"

[tool.ruff.lint]
select = [
    "E",  # pycodestyle errors
    "W",  # pycodestyle warnings
    "F",  # pyflakes
    "I",  # isort
]
ignore = ["E501", "E402", "I001"]  # line too long, module level import not at top, import block sorting (varies by ruff version)

[tool.pytest.ini_options]
minversion = "7.0"
addopts = [
    "--strict-markers",
    "--strict-config",
    "--tb=short",
    "-v",
    "--timeout=300",
    "--timeout-method=thread",
]
testpaths = ["tests/working"]
python_files = "test_*.py"
python_classes = "Test*"
python_functions = "test_*"
asyncio_mode = "auto"
asyncio_default_fixture_loop_scope = "session"
markers = [
    "unit: Unit tests",
    "integration: Integration tests",
    "performance: Performance tests (may be slow)",
]
filterwarnings = [
    "ignore::DeprecationWarning:networkx.*",
    "ignore::PendingDeprecationWarning",
    "error::UserWarning:networkx_mcp.*",
]
log_cli = true
log_cli_level = "INFO"
log_cli_format = "%(asctime)s [%(levelname)8s] %(message)s"
log_cli_date_format = "%Y-%m-%d %H:%M:%S"

[tool.mypy]
python_version = "3.11"
# Temporarily disable strict mode to get CI passing
strict = false
# Keep basic type checking
check_untyped_defs = true
warn_return_any = false  # Too many false positives
warn_unused_configs = true
# Relax function annotation requirements
disallow_untyped_defs = false
disallow_incomplete_defs = false
disallow_untyped_decorators = false
# Keep some safety checks
no_implicit_optional = true
warn_redundant_casts = false  # Too noisy
warn_unused_ignores = false  # Will have many temporary ignores
warn_no_return = true
warn_unreachable = false  # Too many false positives
strict_equality = false  # Causes issues with isinstance checks
# Allow missing imports for now
ignore_missing_imports = true
mypy_path = "src"
namespace_packages = true
explicit_package_bases = true
# Per-module options for gradual typing
[[tool.mypy.overrides]]
module = [
    "networkx.*",
    "matplotlib.*",
    "bibtexparser.*",
    "psutil.*",
]
ignore_missing_imports = true