{
  "$schema": "https://agent-plugins.org/schemas/1.0.0/plugin.schema.json",
  "name": "cisegmentation",
  "version": "0.5.0",
  "description": "Agent skills for the Bilayers CI Segmentation workflow and its measurement databases.",
  "author": {
    "name": "Cellular Imaging Amsterdam UMC",
    "url": "https://github.com/Cellular-Imaging-Amsterdam-UMC"
  },
  "homepage": "https://github.com/Cellular-Imaging-Amsterdam-UMC/cisegmentation",
  "repository": "https://github.com/Cellular-Imaging-Amsterdam-UMC/cisegmentation",
  "license": "MIT",
  "keywords": ["bioimaging", "segmentation", "ome-zarr", "duckdb", "sqlite"],
  "extensions": {
    "nl.bioimaging.biomero": {
      "skills": {
        "analyze-cisegmentation-measurements": {
          "purpose": "attachment-analysis",
          "consumers": ["omero-analysis"],
          "auto_activate": true,
          "match": {
            "extensions": [".duckdb", ".sqlite", ".sqlite3"],
            "filename_globs": [
              "*__cisegmentation_measurements.duckdb",
              "*__cisegmentation_measurements.sqlite",
              "*__cisegmentation_measurements.sqlite3"
            ],
            "required_tables": ["schema_info", "measurement_runs"]
          },
          "required_resources": ["references/REFERENCE.md"],
          "preferred_capabilities": ["omero-data-query-v1"]
        },
        "use-cisegmentation-workflow": {
          "purpose": "workflow-operation",
          "consumers": ["omero-biomero"],
          "auto_activate": false,
          "required_resources": ["references/PARAMETERS.md"]
        }
      }
    }
  }
}