The CDNO provides structured terminologies to describe nutritional attributes of material entities that contribute to human diet. These terms are intended primarily to be associated with datasets that quantify concentration of chemical nutritional components derived from samples taken from any stage in the production of food raw materials (including from crops, livestock, fisheries) and through processing and supply chains. Additional knowledge associated with these dietary sources may be represented by terms that describe functional, physical and other attributes. Whilst recognising that dietary nutrients within food substrates may be present as complex and dynamic physical and chemical structures or mixtures, CDNO focuses on components typically quantified in an analytical chemistry laboratory. The primary CDNO class ‘dietary nutritional component’ contains hierarchical sets of terms organised to reflect commonly used classifications of chemical food composition. This class does not represent an exhaustive classification of chemical components, but focuses on structuring terms according to widely accepted categories. This class is independent of, but may be used in conjunction with, classes that describe ‘analytical methods’ for quantification, ‘physical properties’ or ‘dietary function’. Quantification data may be used and reported in research literature, to inform food composition tables and labelling, or for supply chain quality assurance and control. More specifically, terms within the ‘nutritional component concentration’ class may be used to represent quantification of components described in the ‘dietary nutritional component’ class. Concentration data are intended to be described in conjunction with post-composed metadata concepts, such as represented by the Food Ontology (FoodOn) ‘Food product by organism’, which derives from some food or anatomical entity and a NCBI organismal classification ontology (NCBITaxon) entity. The common vocabulary and relationships defined within CDNO should facilitate description, communication and exchange of material entity-derived nutritional composition datasets typically generated by analytical laboratories. The organisation of the vocabulary is structured to reflect common categories variously used by those involved in crop, livestock or other organismal production, associated R&D and breeding, as well as the food processing and supply sector, and nutritionists, inlcuding compilers and users of food composition databases. The CDNO therefore supports characterisation of genetic diversity and management of biodiversity collections, as well as sharing of knowledge relating to dietary composition between a wider set of researchers, breeders, farmers, processors and other stakeholders. Further development of the functional class should also assist in understanding how interactions between organismal genetic and environmental variation contribute to human diet and health in the farm to fork continuum.
Compositional Dietary Nutrition Ontology
definition
The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
2012-04-05:
Barry Smith
The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible.
Can you fix to something like:
A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property.
Alan Ruttenberg
Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria.
On the specifics of the proposed definition:
We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition.
Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable.
We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with.
PERSON:Daniel Schober
GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
definition
definition
editor note
term replaced by
Use on obsolete terms, relating the term to another term that can be used as a substitute
Person:Alan Ruttenberg
Person:Alan Ruttenberg
Add as annotation triples in the granting ontology
term replaced by
term replaced by
If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL
is a defining property chain axiom
If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R.
is a defining property chain axiom where second argument is reflexive
is part of
my brain is part of my body (continuant parthood, two material entities)
my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)
this day is part of this year (occurrent parthood)
a core relation that holds between a part and its whole
Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.
Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)
A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'.
part_of
BFO:0000050
external
quality
part_of
part_of
part of
part of
part_of
http://www.obofoundry.org/ro/#OBO_REL:part_of
https://wiki.geneontology.org/Part_of
has part
my body has part my brain (continuant parthood, two material entities)
my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)
this year has part this day (occurrent parthood)
a core relation that holds between a whole and its part
Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part.
Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)
A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'.
has_part
BFO:0000051
chebi_ontology
external
quality
has_part
false
has_part
has part
has part
has_part
preceded by
x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other.
is preceded by
preceded_by
http://www.obofoundry.org/ro/#OBO_REL:preceded_by
http://www.obofoundry.org/ro/#OBO_REL:preceded_by
BFO:0000062
external
preceded_by
preceded_by
preceded by
preceded by
precedes
x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
BFO:0000063
external
precedes
precedes
precedes
precedes
occurs in
b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t
occurs_in
unfolds in
unfolds_in
Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant
occurs in
site of
[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t
Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant
contains process
A duck swimming in a pond is partially surrounded by air and partially surrounded by water.
x partially_surrounded_by y if and only if (1) x is adjacent to y and for the region r that is adjacent to x, r partially overlaps y (2) the shared boundary between x and y occupies a non-trivial proportion of the outermost boundary of x
Definition modified from 'surrounded by'.
partially_surrounded_by
A relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist through the separation or transformation of a part of the old entity, and the new entity inherits a significant portion of the matter belonging to that part of the old entity.
derives from part of
A has part relationship between a whole and a part, where the number of parts present in the whole is higher than in comparable entities.
This relation is present in ENVO to support compositional classes such as "X-enriched soil". These will later be formalized, and a different relation from RO may be chosen.
has increased levels of
inheres in
this fragility is a characteristic of this vase
this red color is a characteristic of this apple
a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence.
inheres_in
Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing.
characteristic of
bearer of
this apple is bearer of this red color
this vase is bearer of this fragility
Inverse of characteristic_of
A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist.
bearer_of
is bearer of
RO:0000053
external
bearer_of
bearer_of
bearer of
has characteristic
participates in
this blood clot participates in this blood coagulation
this input material (or this output material) participates in this process
this investigator participates in this investigation
a relation between a continuant and a process, in which the continuant is somehow involved in the process
participates_in
RO:0000056
external
participates_in
participates_in
participates in
participates in
has participant
this blood coagulation has participant this blood clot
this investigation has participant this investigator
this process has participant this input material (or this output material)
a relation between a process and a continuant, in which the continuant is somehow involved in the process
Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time.
has_participant
http://www.obofoundry.org/ro/#OBO_REL:has_participant
http://www.obofoundry.org/ro/#OBO_REL:has_participant
RO:0000057
external
has_participant
has_participant
has participant
has participant
this catalysis function is a function of this enzyme
a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence
A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists.
function_of
is function of
This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
function of
this red color is a quality of this apple
a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence
A quality inheres in its bearer at all times for which the quality exists.
is quality of
quality_of
This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
quality of
this investigator role is a role of this person
a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence
A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists.
is role of
role_of
This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
role of
this enzyme has function this catalysis function (more colloquially: this enzyme has this catalysis function)
a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence
A bearer can have many functions, and its functions can exist for different periods of time, but none of its functions can exist when the bearer does not exist. A function need not be realized at all the times that the function exists.
has_function
has function
this apple has quality this red color
a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence
A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist.
has_quality
has quality
this person has role this investigator role (more colloquially: this person has this role of investigator)
a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence
A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists.
has_role
RO:0000087
chebi_ontology
has_role
false
false
has_role
has role
has role
a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence
has disposition
inverse of has disposition
This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
disposition of
this cell derives from this parent cell (cell division)
this nucleus derives from this parent nucleus (nuclear division)
a relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity
This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops from'.
derives_from
This relation is taken from the RO2005 version of RO. It may be obsoleted and replaced by relations with different definitions. See also the 'develops from' family of relations.
derives from
this parent cell derives into this cell (cell division)
this parent nucleus derives into this nucleus (nuclear division)
a relation between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity
This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops into'. To avoid making statements about a future that may not come to pass, it is often better to use the backward-looking 'derives from' rather than the forward-looking 'derives into'.
derives_into
derives into
is location of
my head is the location of my brain
this cage is the location of this rat
a relation between two independent continuants, the location and the target, in which the target is entirely within the location
Most location relations will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
location_of
location of
contained in
Containment is location not involving parthood, and arises only where some immaterial continuant is involved.
Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t. The containment relation on the instance level can then be defined (see definition):
Intended meaning:
domain: material entity
range: spatial region or site (immaterial continuant)
contained_in
contained in
contains
contains
located in
my brain is located in my head
this rat is located in this cage
a relation between two independent continuants, the target and the location, in which the target is entirely within the location
Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus
Most location relations will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
located_in
http://www.obofoundry.org/ro/#OBO_REL:located_in
located in
X outer_layer_of Y iff:
. X :continuant that bearer_of some PATO:laminar
. X part_of Y
. exists Z :surface
. X has_boundary Z
. Z boundary_of Y
has_boundary: http://purl.obolibrary.org/obo/RO_0002002
boundary_of: http://purl.obolibrary.org/obo/RO_0002000
David Osumi-Sutherland
A relationship that applies between a continuant and its outer, bounding layer. Examples include the relationship between a multicellular organism and its integument, between an animal cell and its plasma membrane, and between a membrane bound organelle and its outer/bounding membrane.
bounding layer of
A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B.
dos
2017-05-24T09:30:46Z
RO:0002013
external
has_regulatory_component_activity
has_regulatory_component_activity
has regulatory component activity
A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B.
dos
2017-05-24T09:31:01Z
RO:0002014
external
has_negative_regulatory_component_activity
has_negative_regulatory_component_activity
By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'.
has negative regulatory component activity
A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.
dos
2017-05-24T09:31:17Z
By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'.
has positive regulatory component activity
dos
2017-05-24T09:44:33Z
A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B.
has component activity
w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.
dos
2017-05-24T09:49:21Z
has component process
dos
2017-09-17T13:52:24Z
Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.
directly regulated by
Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.
Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.
GOC:dos
Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.
dos
2017-09-17T13:52:38Z
directly negatively regulated by
Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.
GOC:dos
Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.
Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.
dos
2017-09-17T13:52:47Z
directly positively regulated by
Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.
Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.
GOC:dos
A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.
dos
2017-09-22T14:14:36Z
This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations.
has effector activity
A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.
A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.
GOC:dos
David Osumi-Sutherland
Previously had ID http://purl.obolibrary.org/obo/RO_0002122 in test files in sandpit - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line. Official ID now chosen from DOS ID range.
during which ends
David Osumi-Sutherland
X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)
ends after
David Osumi-Sutherland
starts_at_end_of
RO:0002087
external
immediately_preceded_by
immediately_preceded_by
X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)
immediately preceded by
immediately preceded by
David Osumi-Sutherland
ends_at_start_of
meets
RO:0002090
external
immediately_precedes
immediately_precedes
X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)
immediately precedes
immediately precedes
David Osumi-Sutherland
o
overlaps
X ends_during Y iff: ((start(Y) before_or_simultaneous_with end(X)) AND end(X) before_or_simultaneous_with end(Y).
ends during
x overlaps y if and only if there exists some z such that x has part z and z part of y
http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)
RO:0002131
external
overlaps
overlaps
overlaps
overlaps
true
A is spatially_disjoint_from B if and only if they have no parts in common
There are two ways to encode this as a shortcut relation. The other possibility to use an annotation assertion between two classes, and expand this to a disjointness axiom.
Chris Mungall
Note that it would be possible to use the relation to label the relationship between a near infinite number of structures - between the rings of saturn and my left earlobe. The intent is that this is used for parsiomoniously for disambiguation purposes - for example, between siblings in a jointly exhaustive pairwise disjointness hierarchy
BFO_0000051 exactly 0 (BFO_0000050 some ?Y)
spatially disjoint from
https://github.com/obophenotype/uberon/wiki/Part-disjointness-Design-Pattern
w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.
The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity.
For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit.
RO:0002180
external
has_component
has_component
has component
has component
x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y
Chris Mungall
David Osumi-Sutherland
Melissa Haendel
Terry Meehan
This is the transitive form of the develops from relation
develops from
inverse of develops from
Chris Mungall
David Osumi-Sutherland
Terry Meehan
develops into
Candidate definition: x directly_develops from y if and only if there exists some developmental process (GO:0032502) p such that x and y both participate in p, and x is the output of p and y is the input of p, and a substantial portion of the matter of x comes from y, and the start of x is coincident with or after the end of y.
Chris Mungall
David Osumi-Sutherland
has developmental precursor
FBbt
TODO - add child relations from DOS
directly develops from
inverse of directly develops from
developmental precursor of
directly develops into
p regulates q iff p is causally upstream of q, the execution of p is not constant and varies according to specific conditions, and p influences the rate or magnitude of execution of q due to an effect either on some enabler of q or some enabler of a part of q.
Chris Mungall
David Hill
Tanya Berardini
GO
Regulation precludes parthood; the regulatory process may not be within the regulated process.
regulates (processual)
false
RO:0002211
external
regulates
regulates
regulates
regulates
regulates (processual)
p negatively regulates q iff p regulates q, and p decreases the rate or magnitude of execution of q.
Chris Mungall
negatively regulates (process to process)
RO:0002212
external
negatively_regulates
negatively_regulates
negatively regulates
negatively regulates
p positively regulates q iff p regulates q, and p increases the rate or magnitude of execution of q.
Chris Mungall
positively regulates (process to process)
RO:0002213
external
positively_regulates
positively_regulates
positively regulates
positively regulates
mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)
osteoclast SubClassOf 'capable of' some 'bone resorption'
A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process.
Chris Mungall
has function realized in
For compatibility with BFO, this relation has a shortcut definition in which the expression "capable of some P" expands to "bearer_of (some realized_by only P)".
RO:0002215
external
capable_of
capable_of
capable of
capable of
c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p.
Chris Mungall
has function in
RO:0002216
external
capable_of_part_of
capable_of_part_of
capable of part of
capable of part of
true
x surrounded_by y if and only if (1) x is adjacent to y and for every region r that is adjacent to x, r overlaps y (2) the shared boundary between x and y occupies the majority of the outermost boundary of x
Chris Mungall
surrounded by
surrounded by
A caterpillar walking on the surface of a leaf is adjacent_to the leaf, if one of the caterpillar appendages is touching the leaf. In contrast, a butterfly flying close to a flower is not considered adjacent, unless there are any touching parts.
The epidermis layer of a vertebrate is adjacent to the dermis.
The plasma membrane of a cell is adjacent to the cytoplasm, and also to the cell lumen which the cytoplasm occupies.
The skin of the forelimb is adjacent to the skin of the torso if these are considered anatomical subdivisions with a defined border. Otherwise a relation such as continuous_with would be used.
x adjacent to y if and only if x and y share a boundary.
This relation acts as a join point with BSPO
Chris Mungall
adjacent to
A caterpillar walking on the surface of a leaf is adjacent_to the leaf, if one of the caterpillar appendages is touching the leaf. In contrast, a butterfly flying close to a flower is not considered adjacent, unless there are any touching parts.
inverse of surrounded by
Chris Mungall
surrounds
Chris Mungall
Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends.
https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1
A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations.
temporally related to
x develops from part of y if and only if there exists some z such that x develops from z and z is part of y
Chris Mungall
develops from part of
x develops_in y if x is located in y whilst x is developing
Chris Mungall
EHDAA2
Jonathan Bard, EHDAA2
develops in
inverse of ends with
Chris Mungall
ends
x ends with y if and only if x has part y and the time point at which x ends is equivalent to the time point at which y ends. Formally: α(y) > α(x) ∧ ω(y) = ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
Chris Mungall
finished by
ends with
x 'has end location' y if and only if there exists some process z such that x 'ends with' z and z 'occurs in' y
Chris Mungall
ends with process that occurs in
has end location
p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p.
Chris Mungall
consumes
RO:0002233
external
has_input
has_input
has input
has input
https://wiki.geneontology.org/Has_input
p has output c iff c is a participant in p, c is present at the end of p, and c is not present in the same state at the beginning of p.
Chris Mungall
produces
has output
Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]
x has developmental contribution from y iff x has some part z such that z develops from y
Chris Mungall
has developmental contribution from
inverse of has developmental contribution from
Chris Mungall
developmentally contributes to
Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p
false
Chris Mungall
In general you should not use this relation to make assertions - use one of the more specific relations below this one
This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from
developmentally preceded by
A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision.
c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes.
acts upstream of
A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway.
c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process.
affects
acts upstream of or within
https://wiki.geneontology.org/Acts_upstream_of_or_within
Inverse of developmentally preceded by
Chris Mungall
developmentally succeeded by
'hypopharyngeal eminence' SubClassOf 'part of precursor of' some tongue
Chris Mungall
part of developmental precursor of
p results in the developmental progression of s iff p is a developmental process and s is an anatomical entity and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss).
This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint.
Chris Mungall
results in developmental progression of
an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists.
every "endocardial cushion formation" (GO:0003272) results_in_formation_of some "endocardial cushion" (UBERON:0002062)
Chris Mungall
GOC:mtg_berkeley_2013
results in formation of
p is causally upstream of, positive effect q iff p is casually upstream of q, and the execution of p is required for the execution of q.
cjm
RO:0002304
external
causally_upstream_of,_positive_effect
causally_upstream_of,_positive_effect
holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y
causally upstream of, positive effect
p is causally upstream of, negative effect q iff p is casually upstream of q, and the execution of p decreases the execution of q.
cjm
RO:0002305
external
causally_upstream_of,_negative_effect
causally_upstream_of,_negative_effect
causally upstream of, negative effect
q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w.
Because part_of is transitive, inheres in is a sub-relation of characteristic of part of
Chris Mungall
inheres in part of
characteristic of part of
true
A mereological relationship or a topological relationship
Chris Mungall
Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships
mereotopologically related to
A relationship that holds between entities participating in some developmental process (GO:0032502)
Chris Mungall
Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development
developmentally related to
a particular instances of akt-2 enables some instance of protein kinase activity
c enables p iff c is capable of p and c acts to execute p.
Chris Mungall
catalyzes
executes
has
is catalyzing
is executing
This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized.
enables
https://wiki.geneontology.org/Enables
A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities.
Chris Mungall
This is a grouping relation that collects relations used for the purpose of connecting structure and function
functionally related to
this relation holds between c and p when c is part of some c', and c' is capable of p.
Chris Mungall
false
part of structure that is capable of
true
c involved_in p if and only if c enables some process p', and p' is part of p
Chris Mungall
actively involved in
enables part of
involved in
https://wiki.geneontology.org/Involved_in
inverse of enables
Chris Mungall
enabled by
https://wiki.geneontology.org/Enabled_by
inverse of regulates
Chris Mungall
regulated by (processual)
RO:0002334
external
regulated_by
regulated_by
regulated by
regulated by
inverse of negatively regulates
Chris Mungall
RO:0002335
external
negatively_regulated_by
negatively_regulated_by
negatively regulated by
negatively regulated by
inverse of positively regulates
Chris Mungall
RO:0002336
external
positively_regulated_by
positively_regulated_by
positively regulated by
positively regulated by
An organism that is a member of a population of organisms
is member of is a mereological relation between a item and a collection.
is member of
member part of
SIO
member of
has member is a mereological relation between a collection and an item.
SIO
has member
inverse of has input
Chris Mungall
input of
inverse of has output
Chris Mungall
output of
Chris Mungall
formed as result of
A lump of clay and a statue
x spatially_coextensive_with y if and inly if x and y have the same location
Chris Mungall
This relation is added for formal completeness. It is unlikely to be used in many practical scenarios
spatially coextensive with
x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction).
Chris Mungall
has developmental potential involving
x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y
Chris Mungall
has potential to developmentally contribute to
x has the potential to develop into y iff x develops into y or if x is capable of developing into y
Chris Mungall
has potential to develop into
x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y
Chris Mungall
has potential to directly develop into
inverse of upstream of
Chris Mungall
RO:0002404
external
causally_downstream_of
causally_downstream_of
causally downstream of
causally downstream of
Chris Mungall
RO:0002405
external
immediately_causally_downstream_of
immediately_causally_downstream_of
immediately causally downstream of
immediately causally downstream of
p indirectly positively regulates q iff p is indirectly causally upstream of q and p positively regulates q.
Chris Mungall
indirectly activates
indirectly positively regulates
https://wiki.geneontology.org/Indirectly_positively_regulates
p indirectly negatively regulates q iff p is indirectly causally upstream of q and p negatively regulates q.
Chris Mungall
indirectly inhibits
indirectly negatively regulates
https://wiki.geneontology.org/Indirectly_negatively_regulates
relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause.
This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.
To define causal relations in an activity-flow type network, we make use of 3 primitives:
* Temporal: how do the intervals of the two occurrents relate?
* Is the causal relation regulatory?
* Is the influence positive or negative?
The first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.
For the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.
For the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.
Each of these 3 primitives can be composed to yield a cross-product of different relation types.
Chris Mungall
Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
causally related to
relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause.
https://en.wikipedia.org/wiki/Causality
p is causally upstream of q iff p is causally related to q, the end of p precedes the end of q, and p is not an occurrent part of q.
Chris Mungall
RO:0002411
external
causally_upstream_of
causally_upstream_of
causally upstream of
causally upstream of
p is immediately causally upstream of q iff p is causally upstream of q, and the end of p is coincident with the beginning of q.
Chris Mungall
RO:0002412
external
immediately_causally_upstream_of
immediately_causally_upstream_of
immediately causally upstream of
immediately causally upstream of
p is 'causally upstream or within' q iff p is causally related to q, and the end of p precedes, or is coincident with, the end of q.
We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2
Chris Mungall
influences (processual)
RO:0002418
external
affects
causally_upstream_of_or_within
causally_upstream_of_or_within
causally upstream of or within
inverse of causally upstream of or within
Chris Mungall
RO:0002427
external
causally_downstream_of_or_within
causally_downstream_of_or_within
causally downstream of or within
c involved in regulation of p if c is involved in some p' and p' regulates some p
Chris Mungall
involved in regulation of
c involved in regulation of p if c is involved in some p' and p' positively regulates some p
Chris Mungall
involved in positive regulation of
c involved in regulation of p if c is involved in some p' and p' negatively regulates some p
Chris Mungall
involved in negative regulation of
c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p
OWL does not allow defining object properties via a Union
Chris Mungall
involved in or reguates
involved in or involved in regulation of
A protein that enables activity in a cytosol.
c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.
Chris Mungall
executes activity in
enables activity in
is active in
c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.
GOC:cjm
GOC:dos
A relationship that holds between two entities in which the processes executed by the two entities are causally connected.
This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact.
Considering relabeling as 'pairwise interacts with'
Chris Mungall
Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules.
in pairwise interaction with
interacts with
http://purl.obolibrary.org/obo/ro/docs/interaction-relations/
http://purl.obolibrary.org/obo/MI_0914
An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other.
Chris Mungall
binds
molecularly binds with
molecularly interacts with
http://purl.obolibrary.org/obo/MI_0915
Axiomatization to GO to be added later
Chris Mungall
An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y.
phosphorylates
The entity A, immediately upstream of the entity B, has an activity that regulates an activity performed by B. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B.
A and B can be physically interacting but not necessarily. Immediately upstream means there are no intermediate entity between A and B.
Chris Mungall
Vasundra Touré
molecularly controls
directly regulates activity of
The entity A, immediately upstream of the entity B, has an activity that negatively regulates an activity performed by B.
For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.
Chris Mungall
Vasundra Touré
directly inhibits
molecularly decreases activity of
directly negatively regulates activity of
The entity A, immediately upstream of the entity B, has an activity that positively regulates an activity performed by B.
For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.
Chris Mungall
Vasundra Touré
directly activates
molecularly increases activity of
directly positively regulates activity of
Chris Mungall
This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning.
helper property (not for use in curation)
'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'
x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y.
Chris Mungall
composed primarily of
p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c.
Chris Mungall
has part that occurs in
Chris Mungall
is kinase activity
x transformation of y if x is the immediate transformation of y, or is linked to y through a chain of transformation relationships
Chris Mungall
transformation of
x immediate transformation of y iff x immediately succeeds y temporally at a time boundary t, and all of the matter present in x at t is present in y at t, and all the matter in y at t is present in x at t
Chris Mungall
immediate transformation of
A relationship between a material entity and a process where the material entity has some causal role that influences the process
causal agent in process
p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one where the execution of p influences the execution of q. p may be upstream, downstream, part of, or a container of q.
Chris Mungall
Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
causal relation between processes
Chris Mungall
depends on
The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch
Chris Mungall
Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
causal relation between entities
A coral reef environment is determined by a particular coral reef
s determined by f if and only if s is a type of system, and f is a material entity that is part of s, such that f exerts a strong causal influence on the functioning of s, and the removal of f would cause the collapse of s.
The label for this relation is probably too general for its restricted use, where the domain is a system. It may be relabeled in future
Chris Mungall
determined by (system to material entity)
Chris Mungall
Pier Buttigieg
determined by
inverse of determined by
Chris Mungall
determines (material entity to system)
determines
s 'determined by part of' w if and only if there exists some f such that (1) s 'determined by' f and (2) f part_of w, or f=w.
Chris Mungall
determined by part of
Chris Mungall
causally influenced by (entity-centric)
causally influenced by
Chris Mungall
interaction relation helper property
http://purl.obolibrary.org/obo/ro/docs/interaction-relations/
Chris Mungall
molecular interaction relation helper property
The entity or characteristic A is causally upstream of the entity or characteristic B, A having an effect on B. An entity corresponds to any biological type of entity as long as a mass is measurable. A characteristic corresponds to a particular specificity of an entity (e.g., phenotype, shape, size).
Chris Mungall
Vasundra Touré
causally influences (entity-centric)
causally influences
p directly regulates q iff p is immediately causally upstream of q and p regulates q.
Chris Mungall
directly regulates (processual)
RO:0002578
external
directly_regulates
directly_regulates
directly regulates
gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'
s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p
Chris Mungall
has part structure that is capable of
A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity.
Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
Chris Mungall
causal relation between material entity and a process
pyrethroid -> growth
Holds between c and p if and only if c is capable of some activity a, and a regulates p.
capable of regulating
Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.
capable of negatively regulating
renin -> arteriolar smooth muscle contraction
Holds between c and p if and only if c is capable of some activity a, and a positively regulates p.
capable of positively regulating
Inverse of 'causal agent in process'
RO:0002608
external
process_has_causal_agent
process_has_causal_agent
process has causal agent
p directly positively regulates q iff p is immediately causally upstream of q, and p positively regulates q.
directly positively regulates (process to process)
RO:0002629
external
directly_positively_regulates
directly_positively_regulates
directly positively regulates
https://wiki.geneontology.org/Directly_positively_regulates
p directly negatively regulates q iff p is immediately causally upstream of q, and p negatively regulates q.
directly negatively regulates (process to process)
RO:0002630
external
directly_negatively_regulates
directly_negatively_regulates
directly negatively regulates
https://wiki.geneontology.org/Directly_negatively_regulates
a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix.
Melissa Haendel
Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue.
produces
a produced_by b iff some process that occurs_in b has_output a.
Melissa Haendel
produced by
Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P.
cjm
2018-01-25T23:20:13Z
enables subfunction
cjm
2018-01-26T23:49:30Z
acts upstream of or within, positive effect
https://wiki.geneontology.org/Acts_upstream_of_or_within,_positive_effect
cjm
2018-01-26T23:49:51Z
acts upstream of or within, negative effect
https://wiki.geneontology.org/Acts_upstream_of_or_within,_negative_effect
c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive
cjm
2018-01-26T23:53:14Z
acts upstream of, positive effect
https://wiki.geneontology.org/Acts_upstream_of,_positive_effect
c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative
cjm
2018-01-26T23:53:22Z
acts upstream of, negative effect
https://wiki.geneontology.org/Acts_upstream_of,_negative_effect
cjm
2018-03-13T23:55:05Z
causally upstream of or within, negative effect
https://wiki.geneontology.org/Causally_upstream_of_or_within,_negative_effect
cjm
2018-03-13T23:55:19Z
causally upstream of or within, positive effect
The entity A has an activity that regulates an activity of the entity B. For example, A and B are gene products where the catalytic activity of A regulates the kinase activity of B.
Vasundra Touré
regulates activity of
p is indirectly causally upstream of q iff p is causally upstream of q and there exists some process r such that p is causally upstream of r and r is causally upstream of q.
pg
2022-09-26T06:07:17Z
indirectly causally upstream of
p indirectly regulates q iff p is indirectly causally upstream of q and p regulates q.
pg
2022-09-26T06:08:01Z
indirectly regulates
A diagnostic testing device utilizes a specimen.
X device utilizes material Y means X and Y are material entities, and X is capable of some process P that has input Y.
https://orcid.org/0000-0001-9625-1899
https://orcid.org/0000-0003-2620-0345
A diagnostic testing device utilizes a specimen means that the diagnostic testing device is capable of an assay, and this assay a specimen as its input.
See github ticket https://github.com/oborel/obo-relations/issues/497
2021-11-08T12:00:00Z
2021-11-08T12:00:00Z
utilizes
device utilizes material
A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff: P results in the existence of C OR affects the intensity or magnitude of C.
RO:0019000
gene_ontology
regulates_characteristic
regulates_characteristic
regulates characteristic
A relationship that holds between a process and a characteristic in which process (P) positively regulates characteristic (C) iff: P results in an increase in the intensity or magnitude of C.
RO:0019001
gene_ontology
positively_regulates_characteristic
positively_regulates_characteristic
positively regulates characteristic
A relationship that holds between a process and a characteristic in which process (P) negatively regulates characteristic (C) iff: P results in a decrease in the intensity or magnitude of C.
RO:0019002
gene_ontology
negatively_regulates_characteristic
negatively_regulates_characteristic
negatively regulates characteristic
chebi_ontology
has_functional_parent
false
false
has functional parent
chebi_ontology
has_parent_hydride
false
false
has parent hydride
chebi_ontology
is_conjugate_acid_of
true
false
is conjugate acid of
chebi_ontology
is_conjugate_base_of
true
false
is conjugate base of
chebi_ontology
is_enantiomer_of
true
false
is enantiomer of
chebi_ontology
is_substituent_group_from
false
false
is substituent group from
chebi_ontology
is_tautomer_of
true
is tautomer of
A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts.
role
An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.
material entity
material entity
A material entity that is ingested and contributes to survival, growth and development
dietary chemical component
Material which remains after the removal of water from plant matter.
dry matter
dry plant matter
Carbohydrates that are absorbed in the small intestine and provide carbohydrate for metabolism in monogastric animals.
digestible carbohydrate
available carbohydrate
Carbohydrates that are absorbed in the small intestine and provide carbohydrate for metabolism in monogastric animals.
Available carbohydrate in monosaccharide and disaccharide form
free sugar
Available carbohydrate in monosaccharide and disaccharide form
A carbohydrate or associated lignin that resists hydrolytic digestion in the small intestine of humans and other monogastric species, with fermentative digestion in the large intestine
dietary fibre
A carbohydrate or associated lignin that resists hydrolytic digestion in the small intestine of humans and other monogastric species, with fermentative digestion in the large intestine
Dietary fibre which dissolves in water and is partially or completely fermented in the colon of monogastric animals by gut bacteria.
water soluble dietary fibre
soluble dietary fibre
Dietary fibre which dissolves in water and is partially or completely fermented in the colon of monogastric animals by gut bacteria.
A portion of starch that cannot be digested by amylases in the small intestine
resistant starch
A portion of starch that cannot be digested by amylases in the small intestine
Dietary fibre which does not dissolve in water and is inert to digestive enzymes in the upper gastrointestinal tract of monogastric animals, with variable fermentability in the large bowel.
water insoluble dietary fibre
insoluble dietary fibre
Dietary fibre which does not dissolve in water and is inert to digestive enzymes in the upper gastrointestinal tract of monogastric animals, with variable fermentability in the large bowel.
A protein that accumulates in developing seeds or grains.
seed storage protein
A protein that accumulates in developing seeds or grains.
A mineral nutrient that represents a major proportion of the minerals required in the diet
macromineral
macro element
Mineral nutrient that is present in a very low concentration within the diet
micromineral
trace element
A plant metabolite that is not essential for growth or division of plant cells.
secondary metabolite
plant secondary metabolite
An organic molecule that has a vitamin(role)
This term can be assigned to CHEBI or any other ontology that claims it
vitamin (molecular entity)
Calcium ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts
dietary calcium
Calcium ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts
Chlorine ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts
dietary chlorine
Chlorine ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts
Magnesium ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts
dietary magnesium
Magnesium ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts
Phosphorus ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts
dietary phosphorus
Phosphorus ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts
Potassium ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts
dietary potassium
Sodium ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts
dietary sodium
Sulfur ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts
dietary sulfur
Sulfur ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts
Chromium ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts
dietary chromium
Chromium ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts
Copper ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts
dietary copper
Copper ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts
Fluorine ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts
dietary fluorine
Fluorine ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts
Iodine ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts
dietary iodine
Iodine ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts
Iron ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts
dietary iron
Manganese ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts
dietary manganese
Manganese ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts
Molybdenum ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts
dietary molybdenum
Molybdenum ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts
Selenium ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts
dietary selenium
Selenium ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts
Zinc ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts
dietary zinc
A complex carbohydrate with various rheological properties that result in viscoelastic behavior
gum
A complex carbohydrate with various rheological properties that result in viscoelastic behavior
Fractions of dietary fibre calculated as the sum of water insoluble dietary fibre (IDF)(e.g. cellulose) and soluble dietary fibre that precipitates in the presence of 78% aqueous ethanol (SDFP).
high molecular weight dietary fibre
Fractions of dietary fibre calculated as the sum of water insoluble dietary fibre (IDF)(e.g. cellulose) and soluble dietary fibre that precipitates in the presence of 78% aqueous ethanol (SDFP).
Dietary fibre of degree of polymerization (DP) > 2 resistant to digestion and absorption in the human small intestine but that is partially or completely fermented by the large bowel microbiota.
fermentable dietary fibre
Dietary fibre that resists degradation by the bacteria in the colon, resulting in limited action by the large bowel microbiota.
non-fermentable dietary fibre
Soluble dietary fibre that dissolves in water to form semifluid solutions or a gel-like matrix, and exhibits high shear strength in aqueous solutions.
viscous dietary fibre
Dietary fibre which has been isolated or synthesized and is added to the diet of humans or other monogastric species that has beneficial physiological effects.
added dietary fibre
Dietary fibre which has been isolated or synthesized and is added to the diet of humans or other monogastric species that has beneficial physiological effects.
Dietary fibre that is selectively utilized by host microorganisms conferring a health benefit.
prebiotic dietary fibre
Dietary fibre that is selectively utilized by host microorganisms conferring a health benefit.
Water soluble dietary fibre which precipitates in 78% aqueous ethanol.
soluble dietary fibre precipitate (SDFP)
Water soluble dietary fibre which precipitates in 78% aqueous ethanol.
Water soluble dietary fibre which remains soluble in 78% aqueous ethanol.
soluble dietary fibre soluble (SDFS)
Water soluble dietary fibre which remains soluble in 78% aqueous ethanol.
Dietary fibre oligomers of degree of polymerization (DP) > 2 which remain soluble in 78% aqueous ethanol and are not digested by enzymes of the human digestive tract.
low molecular weight dietary fibre
Dietary fibre oligomers of degree of polymerization (DP) > 2 which remain soluble in 78% aqueous ethanol and are not digested by enzymes of the human digestive tract.
Amylopectin which is derived from starch.
amylopectin derived from starch
Amylose which is derived from starch.
amylose derived from starch
Galacturonan which is derived from pectin.
galacturonan derived from pectin
Rhamnogalacturonan which is derived from pectin.
rhamnogalacturonan derived from pectin
OBSOLETE. Mannan which is derived from hemicellulose.
Term has been declared redundant by the The Fiber Ontology Working Group
obsolete mannan derived from hemicellulose
true
OBSOLETE. Xylan which is derived from hemicellulose.
Term has been declared redundant by the The Fiber Ontology Working Group
obsolete xylan derived from hemicellulose
true
OBSOLETE. Xyloglucan which is derived from hemicellulose.
Term has been declared redundant by the The Fiber Ontology Working Group
obsolete xyloglucan derived from hemicellulose
true
OBSOLETE. Glucomannan which is derived from hemicellulose.
Term has been declared redundant by the The Fiber Ontology Working Group
obsolete glucomannan derived from hemicellulose
true
OBSOLETE. Arabinoxylan which is derived from hemicellulose.
Term has been declared redundant by the The Fiber Ontology Working Group
obsolete arabinoxylan derived from hemicellulose
true
Fructan which is derived from hemicellulose.
fructan derived from hemicellulose
Arabinan which is derived from hemicellulose.
arabinan derived from hemicellulose
Galactomannan which is derived from hemicellulose.
galactomannan derived from hemicellulose
Galactan which is derived from hemicellulose.
galactan derived from hemicellulose
Glucose which is derived from amylopectin derived from starch.
glucose derived from amylopectin derived from starch
Glucose which is derived from amylose derived from starch.
glucose derived from amylose derived from starch
Glucose which is derived from sucrose.
glucose derived from sucrose
Fructose which is derived from sucrose.
fructose derived from sucrose
Glucose which is derived from maltose.
glucose derived from maltose
Galacturonic acid which is derived from galacturonan derived from pectin.
galacturonic acid derived from galacturonan derived from pectin
Rhamnose which is derived from rhamnogalacturonan derived from pectin.
rhamnose derived from rhamnogalacturonan derived from pectin
D-apiose which is derived from rhamnogalacturonan derived from pectin.
D-apiose derived from rhamnogalacturonan derived from pectin
Galacturonic acid which is derived from rhamnogalacturonan derived from pectin.
galacturonic acid derived from rhamnogalacturonan derived from pectin
Fucose which is derived from rhamnogalacturonan derived from pectin.
fucose derived from rhamnogalacturonan derived from pectin
Xylose which is derived from rhamnogalacturonan derived from pectin.
xylose derived from rhamnogalacturonan derived from pectin
Arabinose which is derived from rhamnogalacturonan derived from pectin.
arabinose derived from rhamnogalacturonan derived from pectin
Galactose which is derived from rhamnogalacturonan derived from pectin.
galactose derived from rhamnogalacturonan derived from pectin
Raffinose which is derived from raffinose family oligosaccharide.
raffinose derived from raffinose family oligosaccharide
Galactose which is derived from raffinose derived from raffinose family oligosaccharide.
galactose derived from raffinose derived from raffinose family oligosaccharide
Glucose which is derived from raffinose derived from raffinose family oligosaccharide.
glucose derived from raffinose derived from raffinose family oligosaccharide
Fructose which is derived from raffinose derived from raffinose family oligosaccharide.
fructose derived from raffinose derived from raffinose family oligosaccharide
Stachyose which is derived from raffinose family oligosaccharide.
stachyose derived from raffinose family oligosaccharide
Galactose which is derived from stachyose derived from raffinose family oligosaccharide.
galactose derived from stachyose derived from raffinose family oligosaccharide
Glucose which is derived from stachyose derived from raffinose family oligosaccharide.
glucose derived from stachyose derived from raffinose family oligosaccharidee
Fructose which is derived from stachyose derived from raffinose family oligosaccharide.
fructose derived from stachyose derived from raffinose family oligosaccharide
Verbascose which is derived from raffinose family oligosaccharide.
verbascose derived from raffinose family oligosaccharide
Galactose which is derived from verbascose derived from raffinose family oligosaccharide.
galactose derived from verbascose derived from raffinose family oligosaccharide
Glucose which is derived from verbascose derived from raffinose family oligosaccharide.
glucose derived from verbascose derived from raffinose family oligosaccharide
Fructose which is derived from verbascose derived from raffinose family oligosaccharide.
fructose derived from verbascose derived from raffinose family oligosaccharide
Glucose which is derived from amorphous cellulose.
glucose derived from amorphous cellulose
Mannose which is derived from mannan derived from hemicellulose.
mannose derived from mannan derived from hemicellulose
Glucose which is derived from xylan derived from hemicellulose.
glucose derived from xylan derived from hemicellulose
Xylose which is derived from xylan derived from hemicellulose.
xylose derived from xylan derived from hemicellulose
Glucose which is derived from xyloglucan derived from hemicellulose.
glucose derived from xyloglucan derived from hemicellulose
Xylose which is derived from xyloglucan derived from hemicellulose.
xylose derived from xyloglucan derived from hemicellulose
Glucose which is derived from glucomannan derived from hemicellulose.
glucose derived from glucomannan derived from hemicellulose
Mannose which is derived from glucomannan derived from hemicellulose.
mannose derived from glucomannan derived from hemicellulose
Arabinose which is derived from arabinoxylan derived from hemicellulose.
arabinose derived from arabinoxylan derived from hemicellulose
Xylose which is derived from arabinoxylan derived from hemicellulose.
xylose derived from arabinoxylan derived from hemicellulose
Inulin which is derived from fructan.
inulin derived from fructan
Fructose which is derived from inulin derived from fructan.
fructose derived from inulin derived from fructan
Amino acid which is derived from protein.
amino acid derived from protein
The concentration of dietary chemical component when measured in some material entity.
material entity dietary chemical component concentration
concentration of dietary chemical component in material entity
The concentration of water when measured in some material entity.
INFOODs:WATER
USDA_fdc_id:1051
USDA_nutrient_nbr:255
material entity water concentration
concentration of water in material entity
The concentration of dry plant matter when measured in some material entity.
INFOODs:DM
INFOODs:SOLID
INFOODs:SOLO
material entity dry plant matter concentration
concentration of dry plant matter in material entity
The concentration of ash when measured in some material entity.
INFOODs:ASH
USDA_fdc_id:1007
USDA_nutrient_nbr:207
material entity ash concentration
concentration of ash in material entity
The concentration of carbohydrate when measured in some material entity.
USDA_fdc_id:1005
USDA_fdc_id:1050
USDA_fdc_id:1072
USDA_fdc_id:2039
USDA_nutrient_nbr:205
USDA_nutrient_nbr:205.2
USDA_nutrient_nbr:284
USDA_nutrient_nbr:956
material entity carbohydrate concentration
concentration of carbohydrate in material entity
The concentration of polysaccharide when measured in some material entity.
INFOODs:POLYSAC
material entity polysaccharide concentration
concentration of polysaccharide in material entity
The concentration of starch when measured in some material entity.
INFOODs:STARCH
INFOODs:STARCH-
INFOODs:STARCHM
USDA_fdc_id:1009
USDA_nutrient_nbr:209
material entity starch concentration
concentration of starch in material entity
The concentration of pectin when measured in some material entity.
INFOODs:PECT
USDA_fdc_id:1017
USDA_nutrient_nbr:220
material entity pectin concentration
concentration of pectin in material entity
The concentration of amorphous cellulose when measured in some material entity.
INFOODs:CELLU
USDA_fdc_id:1022
USDA_nutrient_nbr:225
material entity amorphous cellulose concentration
concentration of amorphous cellulose in material entity
The concentration of hemicellulose when measured in some material entity.
INFOODs:HEMCEL
USDA_fdc_id:1021
USDA_nutrient_nbr:224
material entity hemicellulose concentration
concentration of hemicellulose in material entity
The concentration of inulin when measured in some material entity.
INFOODs:INULN
USDA_fdc_id:1403
USDA_nutrient_nbr:806
material entity inulin concentration
concentration of inulin in material entity
The concentration of monosaccharide when measured in some material entity.
INFOODs:MNSAC
material entity monosaccharide concentration
concentration of monosaccharide in material entity
The concentration of glucose when measured in some material entity.
INFOODs:GLUFB
INFOODs:GLUS
USDA_fdc_id:1011
USDA_nutrient_nbr:211
material entity glucose concentration
concentration of glucose in material entity
The concentration of fructose when measured in some material entity.
INFOODs:FRUFB
INFOODs:FRUS
USDA_fdc_id:1012
USDA_nutrient_nbr:212
material entity fructose concentration
concentration of fructose in material entity
The concentration of rhamnose when measured in some material entity.
INFOODs:RHAFB
INFOODs:RHAS
material entity rhamnose concentration
concentration of rhamnose in material entity
The concentration of D-apiose when measured in some material entity.
material entity D-apiose concentration
concentration of D-apiose in material entity
The concentration of galacturonic acid when measured in some material entity.
INFOODs:GALAAC
USDA_fdc_id:1034
USDA_nutrient_nbr:238
material entity galacturonic acid concentration
concentration of galacturonic acid in material entity
The concentration of fucose when measured in some material entity.
INFOODs:FUCOS
material entity fucose concentration
concentration of fucose in material entity
The concentration of xylose when measured in some material entity.
INFOODs:XYLFB
USDA_fdc_id:1074
USDA_nutrient_nbr:286
material entity xylose concentration
concentration of xylose in material entity
The concentration of arabinose when measured in some material entity.
INFOODs:ARAFB
INFOODs:ARAS
USDA_fdc_id:1073
USDA_nutrient_nbr:285
material entity arabinose concentration
concentration of arabinose in material entity
The concentration of galactose when measured in some material entity.
INFOODs:GALS
USDA_fdc_id:1075
USDA_nutrient_nbr:287
material entity galactose concentration
concentration of galactose in material entity
The concentration of mannose when measured in some material entity.
INFOODs:MANFB
INFOODs:MANS
USDA_fdc_id:1399
USDA_nutrient_nbr:801
material entity mannose concentration
concentration of mannose in material entity
The concentration of ribose when measured in some material entity.
INFOODs:RIBS
USDA_fdc_id:1081
USDA_nutrient_nbr:294
material entity ribose concentration
concentration of ribose in material entity
The concentration of disaccharide when measured in some material entity.
INFOODs:DISAC
material entity disaccharide concentration
concentration of disaccharide in material entity
The concentration of sucrose when measured in some material entity.
INFOODs:SUCS
USDA_fdc_id:1010
USDA_nutrient_nbr:210
material entity sucrose concentration
concentration of sucrose in material entity
The concentration of trehalose when measured in some material entity.
INFOODs:TRES
material entity trehalose concentration
concentration of trehalose in material entity
The concentration of maltose when measured in some material entity.
INFOODs:MALS
USDA_fdc_id:1014
USDA_nutrient_nbr:214
material entity maltose concentration
concentration of maltose in material entity
The concentration of oligosaccharide when measured in some material entity.
INFOODs:OLSAC
INFOODs:OLSACM
USDA_fdc_id:1069
USDA_fdc_id:2064
USDA_nutrient_nbr:281
material entity oligosaccharide concentration
concentration of oligosaccharide in material entity
The concentration of raffinose family oligosaccharide when measured in some material entity.
INFOODs:RAFS
material entity raffinose family oligosaccharide concentration
concentration of raffinose family oligosaccharide in material entity
The concentration of raffinose when measured in some material entity.
INFOODs:RAFS
USDA_fdc_id:1076
USDA_nutrient_nbr:288
material entity raffinose concentration
concentration of raffinose in material entity
The concentration of stachyose when measured in some material entity.
INFOODs:STAS
INFOODs:STASM
USDA_fdc_id:1077
USDA_nutrient_nbr:289
material entity stachyose concentration
concentration of stachyose in material entity
The concentration of verbascose when measured in some material entity.
INFOODs:VERS
INFOODs:VERSM
USDA_fdc_id:2063
material entity verbascose concentration
concentration of verbascose in material entity
The concentration of available carbohydrate when measured in some material entity.
INFOODs:CHOAVL
INFOODs:CHOAVL-
INFOODs:CHOAVLDF
INFOODs:CHOAVLM
INFOODs:CHOAVLO
USDA_fdc_id:1005
USDA_nutrient_nbr:205
material entity available carbohydrate concentration
concentration of available carbohydrate in material entity
The concentration of free sugar when measured in some material entity.
INFOODs:SUGAR
INFOODs:SUGAR-
INFOODs:SUGARM
USDA_fdc_id:1063
USDA_nutrient_nbr:269.3
material entity free sugar concentration
concentration of free sugar in material entity
The concentration of dietary fibre when measured in some material entity.
INFOODs:FIB-
INFOODs:FIBC
INFOODs:FIBDF
INFOODs:FIBTGLC
USDA_fdc_id:1079
USDA_fdc_id:2033
USDA_nutrient_nbr:291
USDA_nutrient_nbr:293
material entity dietary fibre concentration
concentration of dietary fibre in material entity
The concentration of soluble dietary fibre when measured in some material entity.
INFOODs:FIBGLCSSOL
INFOODs:PSACNSS
USDA_fdc_id:1082
USDA_fdc_id:2035
USDA_fdc_id:2036
USDA_fdc_id:2037
USDA_nutrient_nbr:293.2
USDA_nutrient_nbr:295
USDA_nutrient_nbr:953
USDA_nutrient_nbr:954
material entity soluble dietary fibre concentration
concentration of soluble dietary fibre in material entity
The concentration of resistant starch when measured in some material entity.
INFOODs:STARES
INFOODs:STARES1
INFOODs:STARES2
INFOODs:STARES3
INFOODs:STARES4
USDA_fdc_id:1009
USDA_fdc_id:1071
USDA_nutrient_nbr:209
USDA_nutrient_nbr:283
material entity resistant starch concentration
concentration of resistant starch in material entity
The concentration of insoluble dietary fibre when measured in some material entity.
INFOODs:FIBC
INFOODs:FIBGLCSINS
INFOODs:FIBGLCSINSOL
INFOODs:FIBINS
INFOODs:FIBTGLCS
USDA_fdc_id:1084
USDA_fdc_id:2034
USDA_nutrient_nbr:293.1
USDA_nutrient_nbr:297
material entity insoluble dietary fibre concentration
concentration of insoluble dietary fibre in material entity
The concentration of fructan when measured in some material entity.
INFOODs:FRUTN
INFOODs:FRUTNM
material entity fructan concentration
concentration of fructan in material entity
The concentration of protein when measured in some material entity.
INFOODs:PROT-
USDA_fdc_id:1003
USDA_nutrient_nbr:203
material entity protein concentration
concentration of protein in material entity
The concentration of seed storage protein when measured in some material entity.
INFOODs:PROTA
INFOODs:PROTPL
USDA_fdc_id:1003
USDA_nutrient_nbr:203
material entity seed storage protein concentration
concentration of seed storage protein in material entity
The concentration of albumin type when measured in some material entity.
INFOODs:ALBU
material entity albumin type concentration
concentration of albumin type in material entity
The concentration of globulin type when measured in some material entity.
INFOODs:GLOB
material entity globulin type concentration
concentration of globulin type in material entity
The concentration of prolamin when measured in some material entity.
material entity prolamin concentration
concentration of prolamin in material entity
The concentration of cruciferin when measured in some material entity.
material entity cruciferin concentration
concentration of cruciferin in material entity
The concentration of glutenin when measured in some material entity.
INFOODs:GLUTN
material entity glutenin concentration
concentration of glutenin in material entity
The concentration of alanine when measured in some material entity.
INFOODs:ALA
USDA_fdc_id:1222
USDA_nutrient_nbr:513
material entity alanine concentration
concentration of alanine in material entity
The concentration of arginine when measured in some material entity.
INFOODs:ARG
USDA_fdc_id:1220
USDA_nutrient_nbr:511
material entity arginine concentration
concentration of arginine in material entity
The concentration of asparagine when measured in some material entity.
INFOODs:ASN
USDA_fdc_id:1231
USDA_nutrient_nbr:525
material entity asparagine concentration
concentration of asparagine in material entity
The concentration of aspartic acid when measured in some material entity.
INFOODs:ASP
USDA_fdc_id:1223
USDA_nutrient_nbr:514
material entity aspartic acid concentration
concentration of aspartic acid in material entity
The concentration of cysteine when measured in some material entity.
INFOODs:CYSTE
USDA_fdc_id:1216
USDA_fdc_id:1232
USDA_nutrient_nbr:507
USDA_nutrient_nbr:526
material entity cysteine concentration
concentration of cysteine in material entity
The concentration of glutamic acid when measured in some material entity.
INFOODs:GLU
USDA_fdc_id:1224
USDA_nutrient_nbr:515
material entity glutamic acid concentration
concentration of glutamic acid in material entity
The concentration of glutamine when measured in some material entity.
INFOODs:GLN
USDA_fdc_id:1233
USDA_nutrient_nbr:528
material entity glutamine concentration
concentration of glutamine in material entity
The concentration of glycine when measured in some material entity.
INFOODs:GLY
USDA_fdc_id:1225
USDA_nutrient_nbr:516
material entity glycine concentration
concentration of glycine in material entity
The concentration of histidine when measured in some material entity.
INFOODs:HIS
USDA_fdc_id:1221
USDA_nutrient_nbr:512
material entity histidine concentration
concentration of histidine in material entity
The concentration of hydroxyproline when measured in some material entity.
INFOODs:HYP
USDA_fdc_id:1228
USDA_nutrient_nbr:521
material entity hydroxyproline concentration
concentration of hydroxyproline in material entity
The concentration of isoleucine when measured in some material entity.
INFOODs:ILE
USDA_fdc_id:1212
USDA_nutrient_nbr:503
material entity isoleucine concentration
concentration of isoleucine in material entity
The concentration of leucine when measured in some material entity.
INFOODs:LEU
USDA_fdc_id:1213
USDA_nutrient_nbr:504
material entity leucine concentration
concentration of leucine in material entity
The concentration of lysine when measured in some material entity.
INFOODs:LYS
USDA_fdc_id:1214
USDA_nutrient_nbr:505
material entity lysine concentration
concentration of lysine in material entity
The concentration of methionine when measured in some material entity.
INFOODs:MET
USDA_fdc_id:1215
USDA_nutrient_nbr:506
material entity methionine concentration
concentration of methionine in material entity
The concentration of phenylalanine when measured in some material entity.
INFOODs:PHE
USDA_fdc_id:1217
USDA_nutrient_nbr:508
material entity phenylalanine concentration
concentration of phenylalanine in material entity
The concentration of proline when measured in some material entity.
INFOODs:PRO
USDA_fdc_id:1226
USDA_nutrient_nbr:517
material entity proline concentration
concentration of proline in material entity
The concentration of serine when measured in some material entity.
INFOODs:SER
USDA_fdc_id:1227
USDA_nutrient_nbr:518
material entity serine concentration
concentration of serine in material entity
The concentration of threonine when measured in some material entity.
INFOODs:THR
USDA_fdc_id:1211
USDA_nutrient_nbr:502
material entity threonine concentration
concentration of threonine in material entity
The concentration of tryptophan when measured in some material entity.
INFOODs:TRP
USDA_fdc_id:1210
USDA_nutrient_nbr:501
material entity tryptophan concentration
concentration of tryptophan in material entity
The concentration of tyrosine when measured in some material entity.
INFOODs:TYR
USDA_fdc_id:1218
USDA_nutrient_nbr:509
material entity tyrosine concentration
concentration of tyrosine in material entity
The concentration of valine when measured in some material entity.
INFOODs:VAL
USDA_fdc_id:1219
USDA_nutrient_nbr:510
material entity valine concentration
concentration of valine in material entity
The concentration of lipid when measured in some material entity.
INFOODs:FATPL
USDA_fdc_id:1004
USDA_fdc_id:1085
USDA_fdc_id:2044
USDA_nutrient_nbr:204
USDA_nutrient_nbr:298
USDA_nutrient_nbr:950
material entity lipid concentration
concentration of lipid in material entity
The concentration of diglyceride when measured in some material entity.
INFOODs:DGLY
material entity diglyceride concentration
concentration of diglyceride in material entity
The concentration of cis-fatty acid when measured in some material entity.
INFOODs:FACIS
material entity cis-fatty acid concentration
concentration of cis-fatty acid in material entity
The concentration of octanoic acid when measured in some material entity.
material entity octanoic acid concentration
concentration of octanoic acid in material entity
The concentration of pentadecanoic acid when measured in some material entity.
material entity pentadecanoic acid concentration
concentration of pentadecanoic acid in material entity
The concentration of tetracosanoic acid when measured in some material entity.
material entity tetracosanoic acid concentration
concentration of tetracosanoic acid in material entity
The concentration of dodecanoic acid when measured in some material entity.
material entity dodecanoic acid concentration
concentration of dodecanoic acid in material entity
The concentration of tetradecanoic acid when measured in some material entity.
material entity tetradecanoic acid concentration
concentration of tetradecanoic acid in material entity
The concentration of hexadecanoic acid when measured in some material entity.
material entity hexadecanoic acid concentration
concentration of hexadecanoic acid in material entity
The concentration of heptadecanoic acid when measured in some material entity.
material entity heptadecanoic acid concentration
concentration of heptadecanoic acid in material entity
The concentration of octadecanoic acid when measured in some material entity.
material entity octadecanoic acid concentration
concentration of octadecanoic acid in material entity
The concentration of icosanoic acid when measured in some material entity.
material entity icosanoic acid concentration
concentration of icosanoic acid in material entity
The concentration of docosanoic acid when measured in some material entity.
material entity docosanoic acid concentration
concentration of docosanoic acid in material entity
The concentration of propionic acid when measured in some material entity.
INFOODs:PROPAC
material entity propionic acid concentration
concentration of propionic acid in material entity
The concentration of myristoleic acid when measured in some material entity.
material entity myristoleic acid concentration
concentration of myristoleic acid in material entity
The concentration of palmitoleic acid when measured in some material entity.
material entity palmitoleic acid concentration
concentration of palmitoleic acid in material entity
The concentration of oleic acid when measured in some material entity.
material entity oleic acid concentration
concentration of oleic acid in material entity
The concentration of palmitelaidic acid when measured in some material entity.
material entity palmitelaidic acid concentration
concentration of palmitelaidic acid in material entity
The concentration of elaidic acid when measured in some material entity.
material entity elaidic acid concentration
concentration of elaidic acid in material entity
The concentration of vaccenic acid when measured in some material entity.
material entity vaccenic acid concentration
concentration of vaccenic acid in material entity
The concentration of (11Z)-icos-11-enoic acid when measured in some material entity.
material entity (11Z)-icos-11-enoic acid concentration
concentration of (11Z)-icos-11-enoic acid in material entity
The concentration of erucic acid when measured in some material entity.
material entity erucic acid concentration
concentration of erucic acid in material entity
The concentration of (15Z)-tetracosenoic acid when measured in some material entity.
material entity (15Z)-tetracosenoic acid concentration
concentration of (15Z)-tetracosenoic acid in material entity
The concentration of ω−3 fatty acid when measured in some material entity.
material entity ω−3 fatty acid concentration
concentration of ω−3 fatty acid in material entity
The concentration of all-cis-octadeca-6,9,12,15-tetraenoic acid when measured in some material entity.
material entity all-cis-octadeca-6,9,12,15-tetraenoic acid concentration
concentration of all-cis-octadeca-6,9,12,15-tetraenoic acid in material entity
The concentration of all-cis-icosa-11,14,17-trienoic acid when measured in some material entity.
material entity all-cis-icosa-11,14,17-trienoic acid concentration
concentration of all-cis-icosa-11,14,17-trienoic acid in material entity
The concentration of eicosatetraenoic acid when measured in some material entity.
material entity eicosatetraenoic acid concentration
concentration of eicosatetraenoic acid in material entity
The concentration of 6Z,9Z,12Z,15Z,18Z,21Z-tetracosahexaenoic acid when measured in some material entity.
material entity 6Z,9Z,12Z,15Z,18Z,21Z-tetracosahexaenoic acid concentration
concentration of 6Z,9Z,12Z,15Z,18Z,21Z-tetracosahexaenoic acid in material entity
The concentration of α-linolenic acid when measured in some material entity.
material entity α-linolenic acid concentration
concentration of α-linolenic acid in material entity
The concentration of icosapentaenoic acid when measured in some material entity.
material entity icosapentaenoic acid concentration
concentration of icosapentaenoic acid in material entity
The concentration of docosapentaenoic acid when measured in some material entity.
material entity docosapentaenoic acid concentration
concentration of docosapentaenoic acid in material entity
The concentration of docosahexaenoic acid when measured in some material entity.
material entity docosahexaenoic acid concentration
concentration of docosahexaenoic acid in material entity
The concentration of 9-hydroxy-5E,7Z,11Z,14Z-eicosatetraenoic acid when measured in some material entity.
material entity 9-hydroxy-5E,7Z,11Z,14Z-eicosatetraenoic acid concentration
concentration of 9-hydroxy-5E,7Z,11Z,14Z-eicosatetraenoic acid in material entity
The concentration of linolenic acid when measured in some material entity.
material entity linolenic acid concentration
concentration of linolenic acid in material entity
The concentration of ω−6 fatty acid when measured in some material entity.
material entity ω−6 fatty acid concentration
concentration of ω−6 fatty acid in material entity
The concentration of linoleic acid when measured in some material entity.
material entity linoleic acid concentration
concentration of linoleic acid in material entity
The concentration of all-cis-icosa-8,11,14-trienoic acid when measured in some material entity.
material entity all-cis-icosa-8,11,14-trienoic acid concentration
concentration of all-cis-icosa-8,11,14-trienoic acid in material entity
The concentration of γ-linolenic acid when measured in some material entity.
material entity γ-linolenic acid concentration
concentration of γ-linolenic acid in material entity
The concentration of icosadienoic acid when measured in some material entity.
material entity icosadienoic acid concentration
concentration of icosadienoic acid in material entity
The concentration of arachidonic acid when measured in some material entity.
material entity arachidonic acid concentration
concentration of arachidonic acid in material entity
The concentration of docosadienoic acid when measured in some material entity.
material entity docosadienoic acid concentration
concentration of docosadienoic acid in material entity
The concentration of 7,10,13,16-docosatetraenoic acid when measured in some material entity.
material entity 7,10,13,16-docosatetraenoic acid concentration
concentration of 7,10,13,16-docosatetraenoic acid in material entity
The concentration of trans-fatty acid when measured in some material entity.
INFOODs:FATRN
USDA_fdc_id:1257
USDA_nutrient_nbr:605
material entity trans-fatty acid concentration
concentration of trans-fatty acid in material entity
The concentration of capsaicin when measured in some material entity.
INFOODs:CAPSA
material entity capsaicin concentration
concentration of capsaicin in material entity
The concentration of phospholipid when measured in some material entity.
INFOODs:PHOLIP
USDA_fdc_id:1255
USDA_nutrient_nbr:603
material entity phospholipid concentration
concentration of phospholipid in material entity
The concentration of phosphatidylcholine when measured in some material entity.
INFOODs:CHLNP
material entity phosphatidylcholine concentration
concentration of phosphatidylcholine in material entity
The concentration of phosphatidylethanolamine when measured in some material entity.
INFOODs:PHOETHN
material entity phosphatidylethanolamine concentration
concentration of phosphatidylethanolamine in material entity
The concentration of phosphatidyl-L-serine when measured in some material entity.
INFOODs:PHOSER
material entity phosphatidyl-L-serine concentration
concentration of phosphatidyl-L-serine in material entity
The concentration of phosphatidylinositol when measured in some material entity.
INFOODs:PHOINOTL
material entity phosphatidylinositol concentration
concentration of phosphatidylinositol in material entity
The concentration of lysophosphatidylcholine when measured in some material entity.
material entity lysophosphatidylcholine concentration
concentration of lysophosphatidylcholine in material entity
The concentration of glycolipid when measured in some material entity.
INFOODs:GLYLIP
USDA_fdc_id:1256
USDA_nutrient_nbr:604
material entity glycolipid concentration
concentration of glycolipid in material entity
The concentration of glycoglycerolipid when measured in some material entity.
material entity glycoglycerolipid concentration
concentration of glycoglycerolipid in material entity
The concentration of sterol when measured in some material entity.
INFOODs:STEOTH
INFOODs:STERFRE
INFOODs:STERT
material entity sterol concentration
concentration of sterol in material entity
The concentration of campestanol when measured in some material entity.
USDA_fdc_id:1289
USDA_nutrient_nbr:642
material entity campestanol concentration
concentration of campestanol in material entity
The concentration of cholesterol when measured in some material entity.
INFOODs:CHOLEST
USDA_fdc_id:1253
USDA_nutrient_nbr:601
material entity cholesterol concentration
concentration of cholesterol in material entity
The concentration of lupeol when measured in some material entity.
material entity lupeol concentration
concentration of lupeol in material entity
The concentration of phytosterols when measured in some material entity.
INFOODs:PHYSTR
USDA_fdc_id:1283
USDA_nutrient_nbr:636
material entity phytosterols concentration
concentration of phytosterols in material entity
The concentration of avenasterol when measured in some material entity.
INFOODs:AVEDT
material entity avenasterol concentration
concentration of avenasterol in material entity
The concentration of isofucosterol when measured in some material entity.
INFOODs:AVED5
USDA_fdc_id:1296
USDA_nutrient_nbr:649
material entity isofucosterol concentration
concentration of isofucosterol in material entity
The concentration of delta7-avenasterol when measured in some material entity.
INFOODs:AVED7
USDA_fdc_id:1295
USDA_nutrient_nbr:648
material entity delta7-avenasterol concentration
concentration of delta7-avenasterol in material entity
The concentration of brassicasterol when measured in some material entity.
INFOODs:BRASTR
USDA_fdc_id:1287
USDA_nutrient_nbr:640
material entity brassicasterol concentration
concentration of brassicasterol in material entity
The concentration of campesterol when measured in some material entity.
INFOODs:CAMT
USDA_fdc_id:1286
USDA_nutrient_nbr:639
material entity campesterol concentration
concentration of campesterol in material entity
The concentration of ergosterol when measured in some material entity.
INFOODs:ERGSTR
USDA_fdc_id:1284
USDA_nutrient_nbr:637
material entity ergosterol concentration
concentration of ergosterol in material entity
The concentration of sitosterol when measured in some material entity.
INFOODs:SITSTR
material entity sitosterol concentration
concentration of sitosterol in material entity
The concentration of stigmastanol when measured in some material entity.
material entity stigmastanol concentration
concentration of stigmastanol in material entity
The concentration of stigmasterol when measured in some material entity.
INFOODs:STGSTR
USDA_fdc_id:1285
USDA_nutrient_nbr:638
material entity stigmasterol concentration
concentration of stigmasterol in material entity
The concentration of delta7-stigmasterol when measured in some material entity.
INFOODs:STID7
material entity delta7-stigmasterol concentration
concentration of delta7-stigmasterol in material entity
The concentration of mineral nutrient when measured in some material entity.
USDA_fdc_id:2043
USDA_nutrient_nbr:300
material entity mineral nutrient concentration
concentration of mineral nutrient in material entity
The concentration of macro element when measured in some material entity.
material entity macro element concentration
concentration of macro element in material entity
The concentration of calcium(2+) when measured in some material entity.
INFOODs:CA
USDA_fdc_id:1087
USDA_nutrient_nbr:301
material entity calcium(2+) concentration
concentration of calcium(2+) in material entity
The concentration of chloride when measured in some material entity.
INFOODs:CLD
material entity chloride concentration
concentration of chloride in material entity
The concentration of magnesium(2+) when measured in some material entity.
material entity magnesium(2+) concentration
concentration of magnesium(2+) in material entity
The concentration of nitrogen atom when measured in some material entity.
INFOODs:NAM
INFOODs:NT
USDA_fdc_id:1002
USDA_nutrient_nbr:202
material entity nitrogen atom concentration
concentration of nitrogen atom in material entity
The concentration of phosphide(3−) when measured in some material entity.
material entity phosphide(3−) concentration
concentration of phosphide(3−) in material entity
The concentration of potassium(1+) when measured in some material entity.
INFOODs:K
USDA_fdc_id:1092
USDA_nutrient_nbr:306
material entity potassium(1+) concentration
concentration of potassium(1+) in material entity
The concentration of sodium(1+) when measured in some material entity.
INFOODs:NA
USDA_fdc_id:1093
USDA_nutrient_nbr:307
material entity sodium(1+) concentration
concentration of sodium(1+) in material entity
The concentration of sulfide(2−) when measured in some material entity.
INFOODs:S
USDA_fdc_id:1094
USDA_nutrient_nbr:308
material entity sulfide(2−) concentration
concentration of sulfide(2−) in material entity
The concentration of trace element when measured in some material entity.
material entity trace element concentration
concentration of trace element in material entity
The concentration of aluminium(3+) when measured in some material entity.
INFOODs:AL
USDA_fdc_id:1132
USDA_nutrient_nbr:348
material entity aluminium(3+) concentration
concentration of aluminium(3+) in material entity
The concentration of antimony(3+) when measured in some material entity.
INFOODs:SB
USDA_fdc_id:1133
USDA_nutrient_nbr:349
material entity antimony(3+) concentration
concentration of antimony(3+) in material entity
The concentration of arsenic(3+) when measured in some material entity.
INFOODs:AS
USDA_fdc_id:1134
USDA_nutrient_nbr:350
material entity arsenic(3+) concentration
concentration of arsenic(3+) in material entity
The concentration of boron(3+) when measured in some material entity.
INFOODs:B
USDA_fdc_id:1137
USDA_nutrient_nbr:354
material entity boron(3+) concentration
concentration of boron(3+) in material entity
The concentration of cadmium(2+) when measured in some material entity.
INFOODs:CD
USDA_fdc_id:1139
USDA_nutrient_nbr:356
material entity cadmium(2+) concentration
concentration of cadmium(2+) in material entity
The concentration of chromium(2+) when measured in some material entity.
INFOODs:CR
USDA_fdc_id:1096
USDA_nutrient_nbr:310
material entity chromium(2+) concentration
concentration of chromium(2+) in material entity
The concentration of cobalt(2+) when measured in some material entity.
INFOODs:CO
USDA_fdc_id:1097
USDA_nutrient_nbr:311
material entity cobalt(2+) concentration
concentration of cobalt(2+) in material entity
The concentration of copper(2+) when measured in some material entity.
INFOODs:CU
USDA_fdc_id:1098
USDA_nutrient_nbr:312
material entity copper(2+) concentration
concentration of copper(2+) in material entity
The concentration of fluoride when measured in some material entity.
INFOODs:FD
USDA_fdc_id:1099
USDA_nutrient_nbr:313
material entity fluoride concentration
concentration of fluoride in material entity
The concentration of iodide when measured in some material entity.
INFOODs:ID
USDA_fdc_id:1100
USDA_nutrient_nbr:314
material entity iodide concentration
concentration of iodide in material entity
The concentration of iron(2+) when measured in some material entity.
INFOODs:FE
USDA_fdc_id:1089
USDA_nutrient_nbr:303
material entity iron(2+) concentration
concentration of iron(2+) in material entity
The concentration of lead(2+) when measured in some material entity.
INFOODs:PB
USDA_fdc_id:1143
USDA_nutrient_nbr:367
material entity lead(2+) concentration
concentration of lead(2+) in material entity
The concentration of lithium(1+) when measured in some material entity.
INFOODs:LI
USDA_fdc_id:1144
USDA_nutrient_nbr:368
material entity lithium(1+) concentration
concentration of lithium(1+) in material entity
The concentration of manganese atom when measured in some material entity.
INFOODs:MN
USDA_fdc_id:1101
USDA_nutrient_nbr:315
material entity manganese atom concentration
concentration of manganese atom in material entity
The concentration of mercury(2+) when measured in some material entity.
INFOODs:HG
USDA_fdc_id:1145
USDA_nutrient_nbr:370
material entity mercury(2+) concentration
concentration of mercury(2+) in material entity
The concentration of molybdenum(4+) when measured in some material entity.
INFOODs:MO
USDA_fdc_id:1102
USDA_nutrient_nbr:316
material entity molybdenum(4+) concentration
concentration of molybdenum(4+) in material entity
The concentration of nickel(2+) when measured in some material entity.
INFOODs:NI
USDA_fdc_id:1146
USDA_nutrient_nbr:371
material entity nickel(2+) concentration
concentration of nickel(2+) in material entity
The concentration of rubidium(1+) when measured in some material entity.
INFOODs:RB
USDA_fdc_id:1147
USDA_nutrient_nbr:373
material entity rubidium(1+) concentration
concentration of rubidium(1+) in material entity
The concentration of selenium(2+) when measured in some material entity.
INFOODs:SE
USDA_fdc_id:1103
USDA_nutrient_nbr:317
material entity selenium(2+) concentration
concentration of selenium(2+) in material entity
The concentration of strontium(2+) when measured in some material entity.
INFOODs:SR
USDA_fdc_id:1152
USDA_nutrient_nbr:380
material entity strontium(2+) concentration
concentration of strontium(2+) in material entity
The concentration of tin(2+) when measured in some material entity.
INFOODs:SN
USDA_fdc_id:1153
USDA_nutrient_nbr:385
material entity tin(2+) concentration
concentration of tin(2+) in material entity
The concentration of titanium(3+) when measured in some material entity.
INFOODs:TI
USDA_fdc_id:1154
USDA_nutrient_nbr:386
material entity titanium(3+) concentration
concentration of titanium(3+) in material entity
The concentration of vanadium(2+) when measured in some material entity.
INFOODs:V
USDA_fdc_id:1155
USDA_nutrient_nbr:389
material entity vanadium(2+) concentration
concentration of vanadium(2+) in material entity
The concentration of zinc(2+) when measured in some material entity.
INFOODs:ZN
USDA_fdc_id:1095
USDA_nutrient_nbr:309
material entity zinc(2+) concentration
concentration of zinc(2+) in material entity
The concentration of barium(2+) when measured in some material entity.
INFOODs:BA
USDA_fdc_id:1135
USDA_nutrient_nbr:351
material entity barium(2+) concentration
concentration of barium(2+) in material entity
The concentration of caesium(1+) when measured in some material entity.
INFOODs:CS
material entity caesium(1+) concentration
concentration of caesium(1+) in material entity
The concentration of bismuth(3+) when measured in some material entity.
INFOODs:BI
material entity bismuth(3+) concentration
concentration of bismuth(3+) in material entity
The concentration of lanthanum(2+) when measured in some material entity.
INFOODs:LA
material entity lanthanum(2+) concentration
concentration of lanthanum(2+) in material entity
The concentration of salt when measured in some material entity.
INFOODs:NACL
USDA_fdc_id:1149
USDA_nutrient_nbr:375
material entity salt concentration
concentration of salt in material entity
The concentration of sodium chloride when measured in some material entity.
material entity sodium chloride concentration
concentration of sodium chloride in material entity
The concentration of inorganic nitrate salt when measured in some material entity.
INFOODs:NITRA
INFOODs:NITRI
material entity inorganic nitrate salt concentration
concentration of inorganic nitrate salt in material entity
The concentration of bromide when measured in some material entity.
INFOODs:BRD
USDA_fdc_id:1138
USDA_nutrient_nbr:355
material entity bromide concentration
concentration of bromide in material entity
The concentration of vitamin (molecular entity) when measured in some material entity.
USDA_fdc_id:2046
USDA_nutrient_nbr:952
material entity vitamin (molecular entity) concentration
concentration of vitamin (molecular entity) in material entity
The concentration of 5-formyltetrahydrofolic acid when measured in some material entity.
USDA_fdc_id:1192
USDA_nutrient_nbr:437
material entity 5-formyltetrahydrofolic acid concentration
concentration of 5-formyltetrahydrofolic acid in material entity
The concentration of B vitamin when measured in some material entity.
material entity B vitamin concentration
concentration of B vitamin in material entity
The concentration of (6R)-5,10-methenyltetrahydrofolate when measured in some material entity.
material entity (6R)-5,10-methenyltetrahydrofolate concentration
concentration of (6R)-5,10-methenyltetrahydrofolate in material entity
The concentration of vitamin B1 when measured in some material entity.
INFOODs:THIA-
USDA_fdc_id:1165
USDA_nutrient_nbr:404
material entity vitamin B1 concentration
concentration of vitamin B1 in material entity
The concentration of riboflavin when measured in some material entity.
INFOODs:RIBF
USDA_fdc_id:1166
USDA_nutrient_nbr:405
material entity riboflavin concentration
concentration of riboflavin in material entity
The concentration of nicotinic acid when measured in some material entity.
INFOODs:NIA-
USDA_fdc_id:1167
USDA_nutrient_nbr:406
material entity nicotinic acid concentration
concentration of nicotinic acid in material entity
The concentration of (R)-pantothenic acid when measured in some material entity.
INFOODs:PANTAC
USDA_fdc_id:1170
USDA_nutrient_nbr:410
material entity (R)-pantothenic acid concentration
concentration of (R)-pantothenic acid in material entity
The concentration of pyridoxine when measured in some material entity.
INFOODs:PYRXN
USDA_fdc_id:1171
USDA_nutrient_nbr:411
material entity pyridoxine concentration
concentration of pyridoxine in material entity
The concentration of biotin when measured in some material entity.
INFOODs:BIOT
USDA_fdc_id:1176
USDA_nutrient_nbr:416
material entity biotin concentration
concentration of biotin in material entity
The concentration of folic acid when measured in some material entity.
INFOODs:FOLAC
USDA_fdc_id:1186
USDA_nutrient_nbr:431
material entity folic acid concentration
concentration of folic acid in material entity
The concentration of cyanocob(III)alamin when measured in some material entity.
material entity cyanocob(III)alamin concentration
concentration of cyanocob(III)alamin in material entity
The concentration of vitamin C when measured in some material entity.
INFOODs:VITC
INFOODs:VITC-
USDA_fdc_id:1162
USDA_nutrient_nbr:401
material entity vitamin C concentration
concentration of vitamin C in material entity
The concentration of L-ascorbic acid when measured in some material entity.
INFOODs:ASCL
USDA_fdc_id:1162
USDA_nutrient_nbr:401
material entity L-ascorbic acid concentration
concentration of L-ascorbic acid in material entity
The concentration of vitamin A when measured in some material entity.
INFOODs:VITA
INFOODs:VITA-
INFOODs:VITAA
USDA_fdc_id:1104
USDA_fdc_id:1106
USDA_fdc_id:1156
USDA_fdc_id:2067
USDA_nutrient_nbr:318
USDA_nutrient_nbr:320
USDA_nutrient_nbr:392
USDA_nutrient_nbr:960
material entity vitamin A concentration
concentration of vitamin A in material entity
The concentration of carotenoid when measured in some material entity.
INFOODs:CARTOID
material entity carotenoid concentration
concentration of carotenoid in material entity
The concentration of α-carotene when measured in some material entity.
INFOODs:CARTA
USDA_fdc_id:1108
USDA_nutrient_nbr:322
material entity α-carotene concentration
concentration of α-carotene in material entity
The concentration of β-carotene when measured in some material entity.
INFOODs:CARTB
USDA_fdc_id:1107
USDA_nutrient_nbr:321
material entity β-carotene concentration
concentration of β-carotene in material entity
The concentration of 4-hydroxy-all-trans-β-carotene when measured in some material entity.
INFOODs:CARTB
USDA_fdc_id:2028
USDA_nutrient_nbr:321.2
material entity 4-hydroxy-all-trans-β-carotene concentration
concentration of 4-hydroxy-all-trans-β-carotene in material entity
The concentration of 9-cis-β-carotene when measured in some material entity.
INFOODs:CARTBCIS
USDA_fdc_id:1159
USDA_nutrient_nbr:321.1
material entity 9-cis-β-carotene concentration
concentration of 9-cis-β-carotene in material entity
The concentration of vitamin D when measured in some material entity.
INFOODs:VITD
INFOODs:VITD-
USDA_fdc_id:1110
USDA_fdc_id:1114
USDA_nutrient_nbr:324
USDA_nutrient_nbr:328
material entity vitamin D concentration
concentration of vitamin D in material entity
The concentration of calcidiol when measured in some material entity.
USDA_fdc_id:1113
USDA_nutrient_nbr:327
material entity calcidiol concentration
concentration of calcidiol in material entity
The concentration of vitamin E when measured in some material entity.
INFOODs:VITE
INFOODs:VITE-
INFOODs:VITEA
USDA_fdc_id:1124
USDA_fdc_id:1158
USDA_fdc_id:2068
USDA_nutrient_nbr:340
USDA_nutrient_nbr:394
USDA_nutrient_nbr:959
material entity vitamin E concentration
concentration of vitamin E in material entity
The concentration of tocopherol when measured in some material entity.
INFOODs:TOCPHT
USDA_fdc_id:2055
material entity tocopherol concentration
concentration of tocopherol in material entity
The concentration of α-tocopherol when measured in some material entity.
INFOODs:TOCPHA
USDA_fdc_id:1109
USDA_nutrient_nbr:323
material entity α-tocopherol concentration
concentration of α-tocopherol in material entity
The concentration of β-tocopherol when measured in some material entity.
INFOODs:TOCPHB
USDA_fdc_id:1125
USDA_nutrient_nbr:341
material entity β-tocopherol concentration
concentration of β-tocopherol in material entity
The concentration of γ-tocopherol when measured in some material entity.
INFOODs:TOCPHG
USDA_fdc_id:1126
USDA_nutrient_nbr:342
material entity γ-tocopherol concentration
concentration of γ-tocopherol in material entity
The concentration of δ-tocopherol when measured in some material entity.
INFOODs:TOCPHD
USDA_fdc_id:1127
USDA_nutrient_nbr:343
material entity δ-tocopherol concentration
concentration of δ-tocopherol in material entity
The concentration of tocotrienol when measured in some material entity.
INFOODs:TOCTRT
USDA_fdc_id:2054
material entity tocotrienol concentration
concentration of tocotrienol in material entity
The concentration of α-tocotrienol when measured in some material entity.
INFOODs:TOCTRA
USDA_fdc_id:1128
USDA_nutrient_nbr:344
material entity α-tocotrienol concentration
concentration of α-tocotrienol in material entity
The concentration of β-tocotrienol when measured in some material entity.
INFOODs:TOCTRB
USDA_fdc_id:1129
USDA_nutrient_nbr:345
material entity β-tocotrienol concentration
concentration of β-tocotrienol in material entity
The concentration of γ-tocotrienol when measured in some material entity.
INFOODs:TOCTRG
USDA_fdc_id:1130
USDA_nutrient_nbr:346
material entity γ-tocotrienol concentration
concentration of γ-tocotrienol in material entity
The concentration of δ-tocotrienol when measured in some material entity.
INFOODs:TOCTRD
USDA_fdc_id:1131
USDA_nutrient_nbr:347
material entity δ-tocotrienol concentration
concentration of δ-tocotrienol in material entity
The concentration of vitamin K when measured in some material entity.
INFOODs:VITK
USDA_fdc_id:1183
USDA_fdc_id:1184
USDA_nutrient_nbr:428
USDA_nutrient_nbr:429
material entity vitamin K concentration
concentration of vitamin K in material entity
The concentration of plant secondary metabolite when measured in some material entity.
material entity plant secondary metabolite concentration
concentration of plant secondary metabolite in material entity
The concentration of alkaloid when measured in some material entity.
material entity alkaloid concentration
concentration of alkaloid in material entity
The concentration of caffeine when measured in some material entity.
INFOODs:CAFFN
USDA_fdc_id:1057
USDA_nutrient_nbr:262
material entity caffeine concentration
concentration of caffeine in material entity
The concentration of mescaline when measured in some material entity.
material entity mescaline concentration
concentration of mescaline in material entity
The concentration of theobromine when measured in some material entity.
INFOODs:THEBRN
USDA_fdc_id:1058
USDA_nutrient_nbr:263
material entity theobromine concentration
concentration of theobromine in material entity
The concentration of phenols when measured in some material entity.
material entity phenols concentration
concentration of phenols in material entity
The concentration of polyphenol when measured in some material entity.
INFOODs:POLYPHENT
USDA_fdc_id:1209
USDA_nutrient_nbr:470
material entity polyphenol concentration
concentration of polyphenol in material entity
The concentration of tannin when measured in some material entity.
INFOODs:TAN
material entity tannin concentration
concentration of tannin in material entity
The concentration of chlorogenic acid when measured in some material entity.
INFOODs:CHLRAC
USDA_fdc_id:1030
USDA_nutrient_nbr:234
material entity chlorogenic acid concentration
concentration of chlorogenic acid in material entity
The concentration of proanthocyanidin when measured in some material entity.
INFOODs:PAPOLY
INFOODs:TAN
material entity proanthocyanidin concentration
concentration of proanthocyanidin in material entity
The concentration of hydrolysable tannin when measured in some material entity.
INFOODs:TAN
material entity hydrolysable tannin concentration
concentration of hydrolysable tannin in material entity
The concentration of ellagitannin when measured in some material entity.
INFOODs:ELLAC
material entity ellagitannin concentration
concentration of ellagitannin in material entity
The concentration of gallotannin when measured in some material entity.
material entity gallotannin concentration
concentration of gallotannin in material entity
The concentration of phlorotannin when measured in some material entity.
material entity phlorotannin concentration
concentration of phlorotannin in material entity
The concentration of catechol when measured in some material entity.
material entity catechol concentration
concentration of catechol in material entity
The concentration of phloroglucinol when measured in some material entity.
material entity phloroglucinol concentration
concentration of phloroglucinol in material entity
The concentration of (−)-epigallocatechin 3-gallate when measured in some material entity.
INFOODs:EPICATEGC
USDA_fdc_id:1368
USDA_nutrient_nbr:753
material entity (−)-epigallocatechin 3-gallate concentration
concentration of (−)-epigallocatechin 3-gallate in material entity
The concentration of phenolic acid when measured in some material entity.
USDA_fdc_id:1208
USDA_nutrient_nbr:469
material entity phenolic acid concentration
concentration of phenolic acid in material entity
The concentration of gallic acid when measured in some material entity.
INFOODs:GALLAC
USDA_fdc_id:1035
USDA_nutrient_nbr:239
material entity gallic acid concentration
concentration of gallic acid in material entity
The concentration of hydroxybenzoic acid when measured in some material entity.
material entity hydroxybenzoic acid concentration
concentration of hydroxybenzoic acid in material entity
The concentration of salicylic acid when measured in some material entity.
INFOODs:SALAC
USDA_fdc_id:1045
USDA_nutrient_nbr:249
material entity salicylic acid concentration
concentration of salicylic acid in material entity
The concentration of hydroquinone O-β-D-glucopyranoside when measured in some material entity.
material entity hydroquinone O-β-D-glucopyranoside concentration
concentration of hydroquinone O-β-D-glucopyranoside in material entity
The concentration of vanillic acid when measured in some material entity.
INFOODs:VANAC
USDA_fdc_id:1207
USDA_nutrient_nbr:467
material entity vanillic acid concentration
concentration of vanillic acid in material entity
The concentration of syringic acid when measured in some material entity.
INFOODs:SYRAC
material entity syringic acid concentration
concentration of syringic acid in material entity
The concentration of methyl ketone when measured in some material entity.
material entity methyl ketone concentration
concentration of methyl ketone in material entity
The concentration of acetophenone when measured in some material entity.
material entity acetophenone concentration
concentration of acetophenone in material entity
The concentration of phenylacetic acid when measured in some material entity.
material entity phenylacetic acid concentration
concentration of phenylacetic acid in material entity
The concentration of hydroxycinnamic acid when measured in some material entity.
material entity hydroxycinnamic acid concentration
concentration of hydroxycinnamic acid in material entity
The concentration of caffeic acid when measured in some material entity.
INFOODs:CAFFAC
USDA_fdc_id:1201
USDA_nutrient_nbr:461
material entity caffeic acid concentration
concentration of caffeic acid in material entity
The concentration of sinapic acid when measured in some material entity.
INFOODs:SINPAC
material entity sinapic acid concentration
concentration of sinapic acid in material entity
The concentration of chromones when measured in some material entity.
material entity chromones concentration
concentration of chromones in material entity
The concentration of Chicoric acid when measured in some material entity.
material entity Chicoric acid concentration
concentration of Chicoric acid in material entity
The concentration of coumaric acid when measured in some material entity.
material entity coumaric acid concentration
concentration of coumaric acid in material entity
The concentration of 4-coumaric acid when measured in some material entity.
INFOODs:PCHOUAC
material entity 4-coumaric acid concentration
concentration of 4-coumaric acid in material entity
The concentration of 2-coumaric acid when measured in some material entity.
material entity 2-coumaric acid concentration
concentration of 2-coumaric acid in material entity
The concentration of 3-coumaric acid when measured in some material entity.
material entity 3-coumaric acid concentration
concentration of 3-coumaric acid in material entity
The concentration of ferulic acid when measured in some material entity.
INFOODs:FERAC
USDA_fdc_id:1204
USDA_nutrient_nbr:464
material entity ferulic acid concentration
concentration of ferulic acid in material entity
The concentration of scopoletin when measured in some material entity.
material entity scopoletin concentration
concentration of scopoletin in material entity
The concentration of phenylpropane when measured in some material entity.
material entity phenylpropane concentration
concentration of phenylpropane in material entity
The concentration of naphthoquinone when measured in some material entity.
material entity naphthoquinone concentration
concentration of naphthoquinone in material entity
The concentration of 1,2-napthoquinone when measured in some material entity.
material entity 1,2-napthoquinone concentration
concentration of 1,2-napthoquinone in material entity
The concentration of 1,4-napthoquinone when measured in some material entity.
material entity 1,4-napthoquinone concentration
concentration of 1,4-napthoquinone in material entity
The concentration of juglone when measured in some material entity.
material entity juglone concentration
concentration of juglone in material entity