Scholion Copyright 2026 Andrey Belevtsev Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at https://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -------------------------------------------------------------------------- SCOPE OF LICENSES IN THIS REPOSITORY -------------------------------------------------------------------------- Source code (src/, tests/, tools, scripts, plugin, skill): Apache License 2.0 — see LICENSE Curated knowledge base (src/scholion/knowledge/*.json): Creative Commons Attribution 4.0 International — see LICENSE-DATA -------------------------------------------------------------------------- THIRD-PARTY DATA INCLUDED IN THIS REPOSITORY -------------------------------------------------------------------------- This product includes data derived from the Human Ageing Genomic Resources (HAGR), specifically the LongevityMap database, licensed under Creative Commons Attribution 3.0 Unported (https://genomics.senescence.info/legal.html). See ATTRIBUTION.md for the required citations. -------------------------------------------------------------------------- LOINC -------------------------------------------------------------------------- This material contains content from LOINC (http://loinc.org). LOINC is copyright © Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee and is available at no cost under the license at http://loinc.org/license. LOINC® is a registered United States trademark of Regenstrief Institute, Inc. LOINC codes appear in src/scholion/knowledge/lab_test_meta.json, each one next to the laboratory test it identifies and its LOINC long common name. Codes that could not be verified against the LOINC search service are marked and left empty rather than guessed. The 2026-10 mapping review also retains blood-specific series, source-reported methods, legacy MDRD identity and vital components; term-page sources accompany the mappings in lab_test_meta.json. -------------------------------------------------------------------------- THIRD-PARTY RESOURCES USED AT RUN TIME, NOT REDISTRIBUTED HERE -------------------------------------------------------------------------- ClinVar (NCBI), PGS Catalog, dbSNP, Ensembl REST (including 1000 Genomes and gnomAD allele frequencies), RxNorm and RxClass (NLM), and the external tools PharmCAT, PyPGx, T1K, bcftools, samtools, Ensembl VEP, BWA and telomerecat are used by this software but are NOT distributed with it. Each is obtained by the user directly from its provider under that provider's own terms. Full details, licenses and required attributions: ATTRIBUTION.md -------------------------------------------------------------------------- NOT A MEDICAL DEVICE -------------------------------------------------------------------------- Scholion is a research and educational tool. It does not diagnose, treat, cure or prevent any disease, and it does not replace a clinician. See DISCLAIMER.md. This product includes software developed by Exon Research as part of Genomi (https://github.com/exon-research/genomi), licensed under the Apache License, Version 2.0. The vendored files live in src/scholion/vendor/genomi/, carry their own attribution headers, and have been modified; the modifications are listed in src/scholion/vendor/genomi/UPSTREAM.md. Gene reference biology in the panels includes bilingual functional paraphrases of NCBI Gene / RefSeq summaries retrieved on 2026-10-06. Each description carries its NCBI Gene URL. These describe gene function, not individual variant effects. NCBI / NLM content policy: https://www.ncbi.nlm.nih.gov/home/about/policies/ Gene-level function annotations ------------------------------- Selected Gene Ontology annotations, condensed and translated, are attributed to the Gene Ontology Consortium (https://geneontology.org/), under CC BY 4.0 (https://creativecommons.org/licenses/by/4.0/). Ontology release: 2026-07-26. The annotations are provided without warranty. Gene-level biology does not establish the effect of a particular variant. Source records and annotation evidence codes accompany the selected descriptions in gene_function_context.json. Selected human Swiss-Prot functional annotations are derived from UniProtKB, attributed to the UniProt Consortium (https://www.uniprot.org/), under CC BY 4.0 (https://creativecommons.org/licenses/by/4.0/). Statements are selected, adapted and translated. Each record links to its upstream accession. The annotation is at gene or protein level and supplies no individual clinical interpretation.