description: domain/bacteria

full scientific name: Bordetella parapertussis (Eldering and Kendrick 1938) Moreno-López 1952 (Approved Lists 1980)

species: Bordetella parapertussis

synonym: Bacillus parapertussis


Matching level: species

class: Gammaproteobacteria

description: domain/bacteria

domain: Bacteria

family: Enterobacteriaceae

full scientific name: Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

genus: Salmonella

keyword: phylum/pseudomonadota

order: Enterobacterales

phylum: Pseudomonadota

species: Salmonella enterica

synonym: Bacillus typhimurium

synonym: Bacillus enteritidis

synonym: Salmonella enteritidis

synonym: Salmonella paratyphi

synonym: Salmonella typhi

synonym: Salmonella typhimurium

synonym: Bacillus typhi

synonym: Bacillus choleraesuis

synonym: Salmonella choleraesuis

phylum: Proteobacteria

type strain: no


description: domain/bacteria

assembly level: scaffold

description: PA146 assembly for Salmonella enterica subsp. enterica serovar Paratyphi A


class: Actinomycetes

description: domain/bacteria

family: Corynebacteriaceae

full scientific name: Corynebacterium diphtheriae (Kruse 1886) Lehmann and Neumann 1896 (Approved Lists 1980)

genus: Corynebacterium

keyword: phylum/actinomycetota

order: Mycobacteriales

phylum: Actinomycetota

species: Corynebacterium diphtheriae

synonym: Bacillus diphtheriae

class: Actinobacteria

phylum: Actinobacteria


description: domain/bacteria

family: Pseudomonadaceae

full scientific name: Pseudomonas veronii Elomari et al. 1996

genus: Pseudomonas

order: Pseudomonadales

species: Pseudomonas veronii


class: Betaproteobacteria

description: domain/bacteria

family: Alcaligenaceae

full scientific name: Bordetella pertussis (Bergey et al. 1923) Moreno-López 1952 (Approved Lists 1980)

genus: Bordetella

order: Burkholderiales

species: Bordetella pertussis

synonym: Hemophilus pertussis


description: domain/bacteria

assembly level: contig

description: 49950_D01 assembly for Salmonella enterica NCTC8392


description: domain/bacteria

full scientific name: Bordetella bronchiseptica (Ferry 1912) Moreno-López 1952 (Approved Lists 1980)

species: Bordetella bronchiseptica

synonym: Bacillus bronchisepticus


description: domain/bacteria

family: Erwiniaceae

full scientific name: Pantoea agglomerans (Beijerinck 1888) Gavini et al. 1989

genus: Pantoea

species: Pantoea agglomerans

synonym: Enterobacter agglomerans

synonym: Erwinia milletiae

synonym: Bacillus agglomerans

synonym: Bacillus milletiae

synonym: Erwinia herbicola

synonym: Bacterium herbicola


description: domain/bacteria

full scientific name: Stutzerimonas stutzeri (Lehmann and Neumann 1896) Lalucat et al. 2022

genus: Stutzerimonas

species: Stutzerimonas stutzeri

synonym: Bacterium stutzeri

synonym: Pseudomonas stutzeri

species: Pseudomonas stutzeri

database: nuccore

description: Pseudomonas stutzeri ATCC 17591 16S ribosomal RNA gene, complete sequence.

description: ASM289083v1 assembly for Stutzerimonas stutzeri CCUG 44592

description: ASM2444859v1 assembly for Stutzerimonas stutzeri ATCC 17591


description: domain/bacteria


description: domain/bacteria

full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

genus: Escherichia

species: Escherichia coli

synonym: Bacillus coli


description: domain/bacteria

family: Vibrionaceae

full scientific name: Vibrio splendidus (Beijerinck 1900) Baumann et al. 1981

genus: Vibrio

order: Vibrionales

species: Vibrio splendidus

synonym: Photobacter splendidum

synonym: Beneckea splendida

synonym: Vibrio hemicentroti

assembly level: complete

description: ASM9146v1 assembly for Vibrio atlanticus LGP32


description: domain/bacteria

family: Shewanellaceae

full scientific name: Shewanella colwelliana (Weiner et al. 1988) Coyne et al. 1990

genus: Shewanella

order: Alteromonadales

species: Shewanella colwelliana

synonym: Alteromonas colwelliana

synonym: Shewanella affinis


class: Alphaproteobacteria

description: domain/bacteria

family: Rhizobiaceae

full scientific name: <I>Candidatus</I> Rhizobium massiliense corrig. Greub et al. 2004

genus: Rhizobium

order: Hyphomicrobiales

species: Rhizobium massiliense

synonym: Rhizobium massiliae

genus: Agrobacterium

species: Agrobacterium radiobacter


description: domain/bacteria

family: Burkholderiaceae

full scientific name: Pandoraea sputorum Coenye et al. 2000

genus: Pandoraea

species: Pandoraea sputorum


class: Bacilli

description: domain/bacteria

family: Listeriaceae

full scientific name: Listeria monocytogenes (Murray et al. 1926) Pirie 1940 (Approved Lists 1980)

genus: Listeria

keyword: phylum/bacillota

order: Caryophanales

phylum: Bacillota

species: Listeria monocytogenes

synonym: Bacterium monocytogenes

phylum: Firmicutes

description: Listeria monocytogenes JCM 7672 gene for 16S ribosomal RNA, partial sequence

description: Listeria monocytogenes strain ATCC 19112 16S ribosomal RNA gene, partial sequence.

description: ASM56847v1 assembly for Listeria monocytogenes WSLC1001

description: PDT000034720.3 assembly for Listeria monocytogenes MOD1_LS242

description: PDT002493304.1 assembly for Listeria monocytogenes NCTC 5348

description: PDT002493303.1 assembly for Listeria monocytogenes NCTC 5348


description: domain/bacteria

family: Staphylococcaceae

full scientific name: Staphylococcus aureus Rosenbach 1884 (Approved Lists 1980)

genus: Staphylococcus

species: Staphylococcus aureus

synonym: Staphylococcus aureus subsp. anaerobius

synonym: Staphylococcus roterodami


class: Flavobacteriia

description: domain/bacteria

family: Flavobacteriaceae

full scientific name: Polaribacter glomeratus (McGuire et al. 1988) Gosink et al. 1998

genus: Polaribacter

keyword: phylum/bacteroidota

order: Flavobacteriales

phylum: Bacteroidota

species: Polaribacter glomeratus

synonym: Flectobacillus glomeratus

phylum: Bacteroidetes

type strain: yes

description: Polaribacter glomeratus strain ATCC 43844 16S ribosomal RNA gene, partial sequence.

description: ASM295466v1 assembly for Polaribacter glomeratus ATCC 43844

description: ASM799711v1 assembly for Polaribacter glomeratus ACAM 171


culture collection no.: CIP pACYC184

description: domain/bacteria


description: domain/bacteria

full scientific name: Vibrio parahaemolyticus (Fujino et al. 1951) Sakazaki et al. 1963 (Approved Lists 1980)

species: Vibrio parahaemolyticus

synonym: Pasteurella parahaemolytica

synonym: Beneckea parahaemolytica


description: domain/bacteria

family: Streptococcaceae

full scientific name: Streptococcus pyogenes Rosenbach 1884 (Approved Lists 1980)

genus: Streptococcus

order: Lactobacillales

species: Streptococcus pyogenes

strain designation: Digonnet 7


description: domain/bacteria

full scientific name: Achromobacter insuavis Vandamme et al. 2014

genus: Achromobacter

species: Achromobacter insuavis

strain designation: LiPuma AU15210, Vandamme R-47438

description: Achromobacter insuavis partial 16S rRNA gene, type strain LMG 26845T

description: LMG 26845 assembly for Achromobacter insuavis LMG 26845


culture collection no.: CIP pAT18

description: domain/bacteria


class: Negativicutes

description: domain/bacteria

family: Veillonellaceae

full scientific name: Veillonella seminalis Aujoulat et al. 2014

genus: Veillonella

order: Veillonellales

species: Veillonella seminalis

description: Veillonella seminalis strain ADV 4313.2 16S ribosomal RNA gene, partial sequence

description: ASM883037v1 assembly for Veillonella seminalis CCUG 65427


description: domain/bacteria

family: Enterococcaceae

full scientific name: Enterococcus faecium (Orla-Jensen 1919) Schleifer and Kilpper-Bälz 1984

genus: Enterococcus

species: Enterococcus faecium

synonym: Streptococcus faecium


description: domain/bacteria

family: Moraxellaceae

full scientific name: Acinetobacter ursingii Nemec et al. 2001

genus: Acinetobacter

species: Acinetobacter ursingii

synonym: Acinetobacter septicus


description: domain/bacteria

family: Paracoccaceae

full scientific name: Haematobacter massiliensis (Greub and Raoult 2006) Helsel et al. 2007

genus: Haematobacter

order: Rhodobacterales

species: Haematobacter massiliensis

synonym: Rhodobacter massiliensis

family: Rhodobacteraceae

description: Haematobacter massiliensis strain CCUG 47968 16S ribosomal RNA gene, partial sequence.

description: ASM74079v1 assembly for Haematobacter massiliensis CCUG 47968


description: domain/bacteria

full scientific name: Haematobacter missouriensis Helsel et al. 2007

species: Haematobacter missouriensis

description: Haematobacter missouriensis strain CCUG 52307 16S ribosomal RNA gene, partial sequence.

description: ASM74077v1 assembly for Haematobacter missouriensis CCUG 52307


culture collection no.: CIP MIP231

description: domain/bacteria

family: Enterobacteriaceae

species: Escherichia coli


culture collection no.: CIP pACYC177

description: domain/bacteria


culture collection no.: CIP pAT101

description: domain/bacteria


culture collection no.: CIP pAT104

description: domain/bacteria


culture collection no.: CIP pAT105

description: domain/bacteria


culture collection no.: CIP pAT112

description: domain/bacteria


culture collection no.: CIP pAT114

description: domain/bacteria


culture collection no.: CIP pAT113

description: domain/bacteria


culture collection no.: CIP pAT145

description: domain/bacteria

full scientific name: Enterococcus faecalis (Andrewes and Horder 1906) Schleifer and Kilpper-Bälz 1984

species: Enterococcus faecalis

synonym: Streptococcus faecalis


culture collection no.: CIP pAT16

description: domain/bacteria

full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

synonym: Bacillus coli


culture collection no.: CIP pAT121

description: domain/bacteria


culture collection no.: CIP pAT240

description: domain/bacteria


culture collection no.: CIP pAT271

description: domain/bacteria


culture collection no.: CIP pAT272

description: domain/bacteria


culture collection no.: CIP pAT273

description: domain/bacteria


culture collection no.: CIP pAT19

description: domain/bacteria


culture collection no.: CIP pAT191

description: domain/bacteria


culture collection no.: CIP pIP417

class: Bacteroidia

description: domain/bacteria

family: Bacteroidaceae

full scientific name: Bacteroides fragilis (Veillon and Zuber 1898) Castellani and Chalmers 1919 (Approved Lists 1980)

genus: Bacteroides

order: Bacteroidales

species: Bacteroides fragilis

synonym: Bacteroides hominis

synonym: Bacillus fragilis


culture collection no.: CIP pIP1645

description: domain/bacteria


culture collection no.: CIP pUC-TMD

description: domain/bacteria


culture collection no.: CIP pUC18

description: domain/bacteria


culture collection no.: CIP pUC-LMA

description: domain/bacteria


description: domain/bacteria

family: Mycobacteriaceae

full scientific name: Mycobacterium vaccae Bönicke and Juhasz 1964 (Approved Lists 1980)

genus: Mycobacterium

species: Mycobacterium vaccae

synonym: Mycolicibacterium vaccae


description: domain/bacteria

full scientific name: Mycobacterium aurum Tsukamura 1966 (Approved Lists 1980)

species: Mycobacterium aurum

synonym: Mycolicibacterium aurum


description: domain/bacteria

full scientific name: Mycobacterium tusciae Tortoli et al. 1999

species: Mycobacterium tusciae

synonym: Mycolicibacterium tusciae


description: domain/bacteria

species: Mycobacterium wolinskyi

synonym: Mycolicibacterium wolinskyi

full scientific name: Mycobacterium wolinskyi Brown et al. 1999 emend. Nouioui et al. 2018

order: Actinomycetales

description: Mycolicibacterium wolinskyi strain ATCC 700010 16S ribosomal RNA gene, partial sequence

description: M.wolinsky 16S rRNA gene, strain ATCC 700010

description: Mycobacterium wolinskyi strain CIP 106348 16S ribosomal RNA gene, partial sequence.

description: ASM210196v1 assembly for Mycolicibacterium wolinskyi ATCC 700010

description: ASM2582247v1 assembly for Mycolicibacterium wolinskyi CCUG 47168


description: domain/bacteria

genus: Escherichia


class: Sphingobacteriia

description: domain/bacteria

family: Sphingobacteriaceae

full scientific name: Mucilaginibacter pineti Paiva et al. 2014

genus: Mucilaginibacter

order: Sphingobacteriales

species: Mucilaginibacter pineti

description: Mucilaginibacter pineti strain M47C3B 16S ribosomal RNA gene, partial sequence

description: IMG-taxon 2671180113 annotated assembly for Mucilaginibacter pineti 47C3B


description: domain/bacteria

family: Yersiniaceae

full scientific name: Rouxiella chamberiensis Le Flèche-Matéos et al. 2015

genus: Rouxiella

species: Rouxiella chamberiensis


description: domain/bacteria

full scientific name: Listeria monocytogenes (Murray et al. 1926) Pirie 1940 (Approved Lists 1980)

species: Listeria monocytogenes

synonym: Bacterium monocytogenes


description: domain/bacteria

family: Weeksellaceae

full scientific name: Chryseobacterium lathyri Cho et al. 2011

genus: Chryseobacterium

species: Chryseobacterium lathyri

description: ASM799143v1 assembly for Chryseobacterium lathyri NBRC 105250

description: ASM329018v1 assembly for Chryseobacterium lathyri KCTC 22544


description: domain/bacteria

full scientific name: Acinetobacter pittii Nemec et al. 2011

species: Acinetobacter pittii


description: domain/bacteria

full scientific name: Acinetobacter nosocomialis Nemec et al. 2011

species: Acinetobacter nosocomialis


class: Clostridia

description: domain/bacteria

family: Clostridiaceae

full scientific name: Clostridium sporogenes (Metchnikoff 1908) Bergey et al. 1923 (Approved Lists 1980)

genus: Clostridium

order: Eubacteriales

species: Clostridium sporogenes

synonym: Bacillus sporogenes

strain designation: GO 1


description: domain/bacteria

full scientific name: Streptococcus gallolyticus Osawa et al. 1996

species: Streptococcus gallolyticus

synonym: Streptococcus caprinus

strain designation: UCN 34


description: domain/bacteria

full scientific name: Streptococcus oralis Bridge and Sneath 1982

species: Streptococcus oralis

description: Streptococcus oralis DNA, 16S-23S rRNA intergenic spacer region.

description: Streptococcus oralis gene for 16S ribosomal RNA, partial sequence, strain: ATCC 10557.

description: Streptococcus oralis strain CIP 103216 16S ribosomal RNA gene, partial sequence.

description: Streptococcus oralis strain ATCC 10557 16S ribosomal RNA gene, partial sequence.

assembly level: chromosome

description: ASM1348806v1 assembly for Streptococcus oralis subsp. oralis ATCC 10557

description: SoralisSK10v1.0 assembly for Streptococcus oralis SK10


description: domain/bacteria

full scientific name: Streptococcus gordonii Kilian et al. 1989

species: Streptococcus gordonii


description: domain/bacteria

family: Pseudomonadaceae

full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980)

genus: Pseudomonas

species: Pseudomonas aeruginosa

synonym: Pseudomonas paraeruginosa

synonym: Bacterium aeruginosum


description: domain/bacteria

family: Vibrionaceae

full scientific name: Vibrio alginolyticus (Miyamoto et al. 1961) Sakazaki 1968 (Approved Lists 1980)

genus: Vibrio

species: Vibrio alginolyticus

synonym: Beneckea alginolytica

synonym: Oceanomonas alginolytica


culture collection no.: CIP 56.5, CCTM 170, NCTC 53

description: domain/bacteria

full scientific name: Mycobacterium smegmatis (Trevisan 1889) Lehmann and Neumann 1899 (Approved Lists 1980)

species: Mycobacterium smegmatis

synonym: Bacillus smegmatis

synonym: Mycolicibacterium smegmatis


Matching level: strain

description: domain/bacteria

full scientific name: Acinetobacter junii Bouvet and Grimont 1986

species: Acinetobacter junii

synonym: Acinetobacter plantarum

synonym: Acinetobacter grimontii

description: Acin_juni_NIPH_182_V1 assembly for Acinetobacter junii NIPH 182

description: Acinetobacter junii NIPH 182


description: domain/bacteria

full scientific name: Streptococcus pneumoniae (Klein 1884) Chester 1901 (Approved Lists 1980)

species: Streptococcus pneumoniae

synonym: Micrococcus pneumoniae

synonym: Staphylococcus pneumoniae


description: domain/bacteria

family: Alcaligenaceae

full scientific name: Alcaligenes faecalis Castellani and Chalmers 1919 (Approved Lists 1980)

genus: Alcaligenes

species: Alcaligenes faecalis


description: domain/bacteria

full scientific name: Acinetobacter ursingii Nemec et al. 2001

species: Acinetobacter ursingii

synonym: Acinetobacter septicus

description: Acin_ursi_NIPH_706_V1 assembly for Acinetobacter ursingii NIPH 706


description: domain/bacteria

full scientific name: Acinetobacter gyllenbergii Nemec et al. 2009

species: Acinetobacter gyllenbergii

description: Acin_gyll_NIPH_230_V1 assembly for Acinetobacter gyllenbergii NIPH 230


description: domain/bacteria

full scientific name: Mucilaginibacter soyangensis Joung et al. 2014

species: Mucilaginibacter soyangensis


description: domain/bacteria

full scientific name: Enterobacter cloacae (Jordan 1890) Hormaeche and Edwards 1960 (Approved Lists 1980)

genus: Enterobacter

species: Enterobacter cloacae

synonym: Cloaca cloacae

synonym: Bacillus cloacae

synonym: Bacterium cloacae

strain designation: RIVM WR3


description: domain/bacteria

full scientific name: Acinetobacter baumannii Bouvet and Grimont 1986

species: Acinetobacter baumannii

description: Acin_baum_NIPH_615_V1 assembly for Acinetobacter baumannii NIPH 615


description: domain/bacteria

full scientific name: Citrobacter murliniae Brenner et al. 2000

genus: Citrobacter

species: Citrobacter murliniae


description: domain/bacteria

full scientific name: Citrobacter braakii Brenner et al. 1993

species: Citrobacter braakii


description: domain/bacteria

full scientific name: Citrobacter koseri Frederiksen 1970 (Approved Lists 1980)

species: Citrobacter koseri

synonym: Levinea malonatica

synonym: Aerobacter diversum

synonym: Citrobacter diversus

synonym: Citrobacter diversum


description: domain/bacteria

description: Alcaligenes faecalis subsp. faecalis strain ATCC 19018 16S-23S ribosomal RNA intergenic spacer, complete sequence.


description: domain/bacteria

strain designation: Lister


description: domain/bacteria

strain designation: Krier 2


description: domain/bacteria

full scientific name: Acinetobacter haemolyticus (ex Stenzel and Mannheim 1963) Bouvet and Grimont 1986

species: Acinetobacter haemolyticus

description: Acin_haem_NIPH_261_V1 assembly for Acinetobacter haemolyticus NIPH 261


description: domain/bacteria

description: Acin_baum_NIPH_1362_V1 assembly for Acinetobacter baumannii NIPH 1362

description: ASM4505616v1 assembly for Acinetobacter baumannii NIPH 1362


description: domain/bacteria

family: Staphylococcaceae

full scientific name: Staphylococcus aureus Rosenbach 1884 (Approved Lists 1980)

genus: Staphylococcus

species: Staphylococcus aureus

synonym: Staphylococcus aureus subsp. anaerobius

synonym: Staphylococcus roterodami


description: domain/bacteria


description: domain/bacteria

full scientific name: Vibrio parahaemolyticus (Fujino et al. 1951) Sakazaki et al. 1963 (Approved Lists 1980)

species: Vibrio parahaemolyticus

synonym: Pasteurella parahaemolytica

synonym: Beneckea parahaemolytica


description: domain/bacteria

full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

species: Escherichia coli

synonym: Bacillus coli


description: domain/bacteria

full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980)

species: Pseudomonas aeruginosa

synonym: Pseudomonas paraeruginosa

synonym: Bacterium aeruginosum

strain designation: AH


description: domain/bacteria

full scientific name: Mycobacterium aurum Tsukamura 1966 (Approved Lists 1980)

species: Mycobacterium aurum

synonym: Mycolicibacterium aurum


description: domain/bacteria

full scientific name: Mycobacterium branderi Koukila-Kähkölä et al. 1995

species: Mycobacterium branderi

description: Mycobacterium celatum strain NCTC 12882 16S ribosomal RNA gene, partial sequence.


description: domain/bacteria

full scientific name: Mycobacterium cosmeticum Cooksey et al. 2004

species: Mycobacterium cosmeticum

synonym: Mycolicibacterium cosmeticum


class: Not assigned to order

family: Not assigned to family

genus: Nocardia

order: Not assigned to order

phylum: Not assigned to order

species: Nocardia fusca

description: Nocardia fusca gene for 16S rRNA, partial sequence

description: ASM161842v1 assembly for Nocardia fusca NBRC 14340


description: domain/bacteria

full scientific name: Mycobacterium mucogenicum Springer et al. 1995

species: Mycobacterium mucogenicum

synonym: Mycolicibacterium mucogenicum

description: Mycobacterium mucogenicum partial 16S rRNA gene, strain CCUG 47451

description: Mycobacterium Chelonae-like organism 16S rRNA gene

description: Mycobacterium mucogenicum strain ATCC 49650 16S ribosomal RNA gene, partial sequence.

description: Mycolicibacterium mucogenicum strain ATCC 49650 16S ribosomal RNA gene, partial sequence.

description: Mycobacterium mucogenicum strain CIP 105223 16S ribosomal RNA gene, partial sequence.


description: domain/bacteria

description: Mycolicibacterium mucogenicum strain ATCC 49651 16S ribosomal RNA gene, partial sequence.


description: domain/bacteria

full scientific name: Mycobacterium gilvum Stanford and Gunthorpe 1971 (Approved Lists 1980)

species: Mycobacterium gilvum

synonym: Mycolicibacterium gilvum


description: domain/bacteria

full scientific name: Mycobacterium marinum Aronson 1926 (Approved Lists 1980)

species: Mycobacterium marinum


culture collection no.: CIP A51

description: domain/bacteria

family: Neisseriaceae

full scientific name: Neisseria gonorrhoeae (Zopf 1885) Trevisan 1885 (Approved Lists 1980)

genus: Neisseria

order: Neisseriales

species: Neisseria gonorrhoeae

synonym: Merismopedia gonorrhoeae


description: domain/bacteria

order: Enterobacterales


description: domain/bacteria

family: Pasteurellaceae

full scientific name: Pasteurella haemolytica corrig. Newsom and Cross 1932 (Approved Lists 1980)

genus: Pasteurella

order: Pasteurellales

species: Pasteurella haemolytica

synonym: Pasteurella hemolytica

synonym: Mannheimia haemolytica

genus: Mannheimia

species: Mannheimia haemolytica


description: domain/bacteria


description: domain/bacteria

full scientific name: Serratia bockelmannii Cho et al. 2020

genus: Serratia

species: Serratia bockelmannii


description: domain/bacteria

full scientific name: Staphylococcus equorum Schleifer et al. 1985

species: Staphylococcus equorum


class: Cytophagia

description: domain/bacteria

family: Hymenobacteraceae

full scientific name: Hymenobacter flocculans Chung et al. 2011

genus: Hymenobacter

order: Cytophagales

species: Hymenobacter flocculans

synonym: Siccationidurans flocculans

description: Hymenobacter flocculans strain A2-50A 16S ribosomal RNA gene, partial sequence


description: domain/bacteria

full scientific name: Hymenobacter metalli Chung et al. 2011

species: Hymenobacter metalli

synonym: Siccationidurans metalli

description: Hymenobacter metalli strain A2-91 16S ribosomal RNA gene, partial sequence


description: domain/bacteria

full scientific name: Haemophilus influenzae corrig. (Lehmann and Neumann 1896) Winslow et al. 1917 (Approved Lists 1980)

genus: Haemophilus

species: Haemophilus influenzae

synonym: Hemophilus influenzae

synonym: Bacterium influenzae


description: domain/bacteria

family: Lysobacteraceae

full scientific name: Stenotrophomonas maltophilia (Hugh 1981 ex Hugh and Ryschenkow 1961) Palleroni and Bradbury 1993

genus: Stenotrophomonas

order: Lysobacterales

species: Stenotrophomonas maltophilia

synonym: Stenotrophomonas africana

synonym: Xanthomonas maltophilia

synonym: Pseudomonas maltophilia


description: domain/bacteria

family: Shewanellaceae

full scientific name: Shewanella oneidensis Venkateswaran et al. 1999

genus: Shewanella

order: Alteromonadales

species: Shewanella oneidensis

description: Shewanella oneidensis MR-1 16S ribosomal RNA gene, partial sequence

description: ASM14616v2 assembly for Shewanella oneidensis MR-1

description: ASM3384304v1 assembly for Shewanella oneidensis ATCC 700550


genus: Rhodobacter

species: Rhodobacter sanguinis


description: domain/bacteria

family: Lactobacillaceae

full scientific name: Ligilactobacillus ruminis (Sharpe et al. 1973) Zheng et al. 2020

genus: Ligilactobacillus

species: Ligilactobacillus ruminis

synonym: Lactobacillus ruminis

genus: Lactobacillus

species: Lactobacillus ruminis


description: domain/bacteria

family: Enterobacteriaceae

full scientific name: Enterobacter asburiae Brenner et al. 1988

species: Enterobacter asburiae

synonym: Enterobacter muelleri


description: domain/bacteria

family: Listeriaceae

full scientific name: Listeria monocytogenes (Murray et al. 1926) Pirie 1940 (Approved Lists 1980)

genus: Listeria

species: Listeria monocytogenes

synonym: Bacterium monocytogenes

strain designation: Nathalie


description: domain/bacteria

family: Streptococcaceae

full scientific name: Streptococcus mutans Clarke 1924 (Approved Lists 1980)

genus: Streptococcus

species: Streptococcus mutans


description: domain/bacteria

full scientific name: Achromobacter denitrificans (Rüger and Tan 1983 ex Leifson and Hugh 1954) Coenye et al. 2003

genus: Achromobacter

order: Burkholderiales

species: Achromobacter denitrificans

synonym: Achromobacter xylosoxidans subsp. denitrificans

synonym: Alcaligenes denitrificans

synonym: Alcaligenes xylosoxidans subsp. denitrificans


description: domain/bacteria

full scientific name: Haemophilus pleuropneumoniae corrig. Shope 1964 (Approved Lists 1980)

species: Haemophilus pleuropneumoniae

synonym: Hemophilus pleuropneumoniae

synonym: Actinobacillus pleuropneumoniae

genus: Actinobacillus

species: Actinobacillus pleuropneumoniae


description: domain/bacteria

full scientific name: <I>Achromobacter</I> Yabuuchi and Yano 1981

species: Achromobacter sp.

synonym: Achromobacter


description: domain/bacteria

full scientific name: Alcaligenes faecalis Castellani and Chalmers 1919 (Approved Lists 1980)

genus: Alcaligenes

species: Alcaligenes faecalis


description: domain/bacteria

full scientific name: Achromobacter xylosoxidans (ex Yabuuchi and Ohyama 1971) Yabuuchi and Yano 1981

species: Achromobacter xylosoxidans

synonym: Achromobacter xylosoxidans

synonym: Alcaligenes xylosoxidans

synonym: Alcaligenes denitrificans subsp. xylosoxydans

synonym: Alcaligenes xylosoxydans

strain designation: Dr Paris


description: domain/bacteria

description: LMG 1860 assembly for Achromobacter denitrificans LMG 1860


description: domain/bacteria


description: domain/bacteria

family: Burkholderiaceae

full scientific name: Cupriavidus laharis Sato et al. 2006

genus: Cupriavidus

species: Cupriavidus laharis

description: Cupriavidus laharis partial 16S rRNA gene, type strain CCUG53908T


description: domain/bacteria

family: Moraxellaceae

full scientific name: <I>Acinetobacter</I> Brisou and Prévot 1954 (Approved Lists 1980)

genus: Acinetobacter

order: Pseudomonadales

species: Acinetobacter sp.

description: Acin_sp_NIPH_284_V1 assembly for Acinetobacter sp. NIPH 284


description: domain/bacteria

full scientific name: Acinetobacter radioresistens Nishimura et al. 1988

species: Acinetobacter radioresistens

description: Acin_radi_NIPH_2130_V1 assembly for Acinetobacter radioresistens NIPH 2130

description: Acinetobacter radioresistens NIPH 2130


description: domain/bacteria

full scientific name: Acinetobacter pittii Nemec et al. 2011

species: Acinetobacter pittii

description: Acin_pitt_ANC_3678_V1 assembly for Acinetobacter pittii ANC 3678


class: Epsilonproteobacteria

description: domain/bacteria

family: Campylobacteraceae

full scientific name: Campylobacter jejuni (Jones et al. 1931) Véron and Chatelain 1973 (Approved Lists 1980)

genus: Campylobacter

order: Campylobacterales

species: Campylobacter jejuni

synonym: Vibrio jejuni


description: domain/bacteria

full scientific name: Acinetobacter nosocomialis Nemec et al. 2011

species: Acinetobacter nosocomialis


description: domain/bacteria

family: Bifidobacteriaceae

full scientific name: Gardnerella vaginalis (Gardner and Dukes 1955) Greenwood and Pickett 1980

genus: Gardnerella

order: Bifidobacteriales

species: Gardnerella vaginalis

synonym: Corynebacterium vaginale

synonym: Haemophilus vaginalis


description: domain/bacteria

full scientific name: Haemophilus influenzae corrig. (Lehmann and Neumann 1896) Winslow et al. 1917 (Approved Lists 1980)

species: Haemophilus influenzae

synonym: Hemophilus influenzae

synonym: Bacterium influenzae

strain designation: KW 21


description: domain/bacteria

full scientific name: Haemophilus parainfluenzae Rivers 1922 (Approved Lists 1980)

species: Haemophilus parainfluenzae

synonym: Parahaemophilus parainfluenzae

strain designation: com 56


culture collection no.: CIP 68.19, NBIMCC 152

description: domain/bacteria

strain designation: plu


description: domain/bacteria

description: Achromobacter xylosoxidans strain CCUG 723 16S ribosomal RNA gene, partial sequence.


description: domain/bacteria

description: Achromobacter xylosoxidans JCM 9660 gene for 16S ribosomal RNA, partial sequence

description: 44257_A01 assembly for Achromobacter xylosoxidans NCTC10808


description: domain/bacteria


description: domain/bacteria

full scientific name: Acinetobacter baumannii Bouvet and Grimont 1986

species: Acinetobacter baumannii

description: Acin_baum_NIPH_1734_V1 assembly for Acinetobacter baumannii NIPH 1734


description: domain/bacteria

full scientific name: Achromobacter mucicolens Vandamme et al. 2013

species: Achromobacter mucicolens

description: Achromobacter denitrificans JCM 9658 gene for 16S ribosomal RNA, partial sequence

description: LMG 3415 assembly for Achromobacter mucicolens LMG 3415


description: domain/bacteria

family: Pseudomonadaceae

full scientific name: Stutzerimonas stutzeri (Lehmann and Neumann 1896) Lalucat et al. 2022

genus: Stutzerimonas

species: Stutzerimonas stutzeri

synonym: Bacterium stutzeri

synonym: Pseudomonas stutzeri

genus: Pseudomonas

species: Pseudomonas stutzeri


description: domain/bacteria

family: Alcaligenaceae

full scientific name: Achromobacter insolitus Coenye et al. 2003

species: Achromobacter insolitus


description: domain/bacteria

full scientific name: Streptococcus pneumoniae (Klein 1884) Chester 1901 (Approved Lists 1980)

order: Lactobacillales

species: Streptococcus pneumoniae

synonym: Micrococcus pneumoniae

synonym: Staphylococcus pneumoniae


description: domain/bacteria

full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980)

species: Pseudomonas aeruginosa

synonym: Pseudomonas paraeruginosa

synonym: Bacterium aeruginosum

strain designation: MUS


Matching level: subspecies

description: domain/bacteria

family: Vibrionaceae

full scientific name: Vibrio aestuarianus subsp. francensis Garcia et al. 2021

genus: Vibrio

order: Vibrionales

species: Vibrio aestuarianus subsp. francensis

synonym: Vibrio aestuarianus subsp. francensis

species: Vibrio aestuarianus


description: domain/bacteria

full scientific name: Achromobacter insuavis Vandamme et al. 2014

species: Achromobacter insuavis


description: domain/bacteria

full scientific name: Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

genus: Salmonella

species: Salmonella enterica

synonym: Bacillus typhimurium

synonym: Bacillus enteritidis

synonym: Salmonella enteritidis

synonym: Salmonella paratyphi

synonym: Salmonella typhi

synonym: Salmonella typhimurium

synonym: Bacillus typhi

synonym: Bacillus choleraesuis

synonym: Salmonella choleraesuis

description: S.typhimurium gene for 16S ribosomal RNA.


description: domain/bacteria

full scientific name: Listeria monocytogenes (Murray et al. 1926) Pirie 1940 (Approved Lists 1980)

order: Caryophanales

species: Listeria monocytogenes

synonym: Bacterium monocytogenes


description: domain/bacteria

full scientific name: Achromobacter xylosoxidans (ex Yabuuchi and Ohyama 1971) Yabuuchi and Yano 1981

species: Achromobacter xylosoxidans

synonym: Achromobacter xylosoxidans

synonym: Alcaligenes xylosoxidans

synonym: Alcaligenes denitrificans subsp. xylosoxydans

synonym: Alcaligenes xylosoxydans


description: domain/bacteria

family: Flavobacteriaceae

full scientific name: Flavobacterium piscis Zamora et al. 2014

genus: Flavobacterium

order: Flavobacteriales

species: Flavobacterium piscis

description: ASM168692v1 assembly for Flavobacterium piscis CCUG 60099

description: ASM222204v1 assembly for Flavobacterium piscis CCUG 60099


description: domain/bacteria


description: domain/bacteria

full scientific name: Moraxella osloensis Bøvre and Henriksen 1967 (Approved Lists 1980)

genus: Moraxella

species: Moraxella osloensis

synonym: Faucicola osloensis


culture collection no.: CIP pIP1607

description: domain/bacteria

full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

genus: Escherichia

species: Escherichia coli

synonym: Bacillus coli


description: domain/bacteria

family: Bacillaceae

full scientific name: Bacillus cereus Frankland and Frankland 1887 (Approved Lists 1980)

genus: Bacillus

species: Bacillus cereus


description: domain/bacteria


culture collection no.: CIP pIP419

description: domain/bacteria

family: Bacteroidaceae

full scientific name: Bacteroides fragilis (Veillon and Zuber 1898) Castellani and Chalmers 1919 (Approved Lists 1980)

genus: Bacteroides

order: Bacteroidales

species: Bacteroides fragilis

synonym: Bacteroides hominis

synonym: Bacillus fragilis


culture collection no.: CIP pIP421

description: domain/bacteria


description: domain/bacteria

full scientific name: Flavobacterium branchiophilum corrig. Wakabayashi et al. 1989

species: Flavobacterium branchiophilum

synonym: Flavobacterium branchiophila


description: domain/bacteria

strain designation: PQ 37


description: domain/bacteria

full scientific name: Acinetobacter ursingii Nemec et al. 2001

species: Acinetobacter ursingii

synonym: Acinetobacter septicus


description: domain/bacteria

full scientific name: Achromobacter piechaudii (Kiredjian et al. 1986) Yabuuchi et al. 1998

species: Achromobacter piechaudii

synonym: Alcaligenes piechaudii


description: domain/bacteria

family: Helicobacteraceae

full scientific name: Helicobacter cholecystus Franklin et al. 1997

genus: Helicobacter

species: Helicobacter cholecystus

description: Helicobacter cholecystus strain ATCC 700242 16S ribosomal RNA gene, partial sequence.

description: ASM336421v1 assembly for Helicobacter cholecystus ATCC 700242


class: Fusobacteriia

description: domain/bacteria

family: Leptotrichiaceae

full scientific name: Streptobacillus moniliformis Levaditi et al. 1925 (Approved Lists 1980)

genus: Streptobacillus

keyword: phylum/fusobacteriota

order: Fusobacteriales

phylum: Fusobacteriota

species: Streptobacillus moniliformis

phylum: Fusobacteria


description: domain/bacteria

family: Aeromonadaceae

full scientific name: Aeromonas hydrophila (Chester 1901) Stanier 1943 (Approved Lists 1980)

genus: Aeromonas

order: Aeromonadales

species: Aeromonas hydrophila

synonym: Pseudomonas hydrophila

synonym: Bacillus hydrophilus

strain designation: AmMS 199

description: Aeromonas hydrophila strain ATCC 49140 16S ribosomal RNA gene, complete sequence.


description: domain/bacteria

genus: Achromobacter

description: Achromobacter xylosoxidans subsp. xylosoxidans 16S ribosomal RNA gene, partial sequence.

description: Achromobacter sp. CCUG 2349 partial 16S rRNA gene, strain CCUG 2349


description: domain/bacteria


description: domain/bacteria


description: domain/bacteria

synonym: Bacillus typhimurium

synonym: Salmonella enteritidis

synonym: Salmonella paratyphi

synonym: Salmonella typhi

synonym: Bacillus enteritidis

synonym: Bacillus typhi

synonym: Salmonella typhimurium


description: domain/bacteria

family: Alteromonadaceae

full scientific name: Paraglaciecola chathamensis (Matsuyama et al. 2006) Shivaji and Reddy 2014

genus: Paraglaciecola

species: Paraglaciecola chathamensis

synonym: Paraglaciecola oceanifecundans

synonym: Glaciecola chathamensis

synonym: Glaciecola agarilytica

synonym: Paraglaciecola agarilytica

description: Glaciecola chathamensis gene for 16S rRNA, partial sequence, strain: S18K6

description: ASM31495v1 assembly for Paraglaciecola chathamensis S18K6


description: domain/bacteria

full scientific name: Paraglaciecola psychrophila (Zhang et al. 2006) Shivaji and Reddy 2014

species: Paraglaciecola psychrophila

synonym: Glaciecola psychrophila

description: Glaciecola psychrophila strain 170 16S ribosomal RNA gene, partial sequence

description: ASM31507v1 assembly for Paraglaciecola psychrophila 170

description: ASM34763v1 assembly for Paraglaciecola psychrophila 170


description: domain/bacteria

full scientific name: Glaciecola punicea Bowman et al. 1998

genus: Glaciecola

species: Glaciecola punicea

strain designation: ICO 67

description: Glaciecola punicea ACAM 611T 16S ribosomal RNA gene, partial sequence.

description: ASM25216v2 assembly for Glaciecola punicea ACAM 611


description: domain/bacteria

full scientific name: Burkholderia cepacia (Palleroni and Holmes 1981 ex Burkholder 1950) Yabuuchi et al. 1993

genus: Burkholderia

species: Burkholderia cepacia

synonym: Pseudomonas cepacia


description: domain/bacteria

full scientific name: Streptococcus pneumoniae (Klein 1884) Chester 1901 (Approved Lists 1980)

genus: Streptococcus

species: Streptococcus pneumoniae

synonym: Micrococcus pneumoniae

synonym: Staphylococcus pneumoniae


description: domain/bacteria

full scientific name: Streptococcus oralis Bridge and Sneath 1982

species: Streptococcus oralis

description: Streptococcus oralis strain CIP 104985 16S ribosomal RNA gene, partial sequence.


description: domain/bacteria

family: Enterococcaceae

full scientific name: Enterococcus faecium (Orla-Jensen 1919) Schleifer and Kilpper-Bälz 1984

genus: Enterococcus

species: Enterococcus faecium

synonym: Streptococcus faecium


description: domain/bacteria

family: Microbacteriaceae

full scientific name: Microbacterium lacticum Orla-Jensen 1919 (Approved Lists 1980)

genus: Microbacterium

order: Micrococcales

species: Microbacterium lacticum


description: domain/bacteria

full scientific name: Vibrio neocaledonicus Chalkiadakis et al. 2013

genus: Vibrio

species: Vibrio neocaledonicus


description: domain/bacteria

family: Enterobacteriaceae

full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

order: Enterobacterales

species: Escherichia coli

synonym: Bacillus coli


description: domain/bacteria

full scientific name: Vibrio parahaemolyticus (Fujino et al. 1951) Sakazaki et al. 1963 (Approved Lists 1980)

species: Vibrio parahaemolyticus

synonym: Beneckea parahaemolytica

synonym: Pasteurella parahaemolytica


description: domain/bacteria

full scientific name: Vibrio cholerae Pacini 1854 (Approved Lists 1980)

species: Vibrio cholerae

synonym: Vibrio albensis


description: domain/bacteria

full scientific name: Taylorella asinigenitalis Jang et al. 2001

genus: Taylorella

species: Taylorella asinigenitalis

description: ASM68775v1 assembly for Taylorella asinigenitalis ATCC 700933


description: domain/bacteria

full scientific name: Acinetobacter baumannii Bouvet and Grimont 1986

genus: Acinetobacter

species: Acinetobacter baumannii


description: domain/bacteria

full scientific name: Acinetobacter variabilis Krizova et al. 2015

species: Acinetobacter variabilis

synonym: Acinetobacter refrigeratoris

synonym: Acinetobacter refrigeratorensis

description: Acin_sp_NIPH_899_V1 assembly for Acinetobacter variabilis NIPH 899


description: domain/bacteria

family: Mycobacteriaceae

full scientific name: Mycobacterium avium subsp. paratuberculosis (Bergey et al. 1923) Thorel et al. 1990

genus: Mycobacterium

order: Mycobacteriales

synonym: Mycobacterium paratuberculosis


description: domain/bacteria

family: Pseudonocardiaceae

full scientific name: Saccharothrix aerocolonigenes subsp. staurosporea corrig. (ex Omura et al. 1977) Takahashi et al. 1996

genus: Saccharothrix

order: Pseudonocardiales

synonym: Saccharothrix aerocolonigenes subsp. staurosporeus

synonym: Streptomyces staurosporeus

genus: Lentzea

species: Lentzea albida

description: Saccharothrix aerocolonigenes gene for 16S ribosomal RNA


description: domain/bacteria

family: Pasteurellaceae

full scientific name: Aggregatibacter actinomycetemcomitans (Klinger 1912) Nørskov-Lauritsen and Kilian 2006

genus: Aggregatibacter

order: Pasteurellales

species: Aggregatibacter actinomycetemcomitans

synonym: Actinobacillus actinomycetemcomitans

synonym: Bacterium actinomycetemcomitans

synonym: Haemophilus actinomycetemcomitans


description: domain/bacteria

full scientific name: Citrobacter freundii (Braak 1928) Werkman and Gillen 1932 (Approved Lists 1980)

genus: Citrobacter

species: Citrobacter freundii

synonym: Bacterium freundii

synonym: Bethesda ballerupensis


description: domain/bacteria

family: Lachnospiraceae

full scientific name: Lacrimispora saccharolytica (Murray et al. 1982) Haas and Blanchard 2020

genus: Lacrimispora

order: Eubacteriales

species: Lacrimispora saccharolytica

synonym: Clostridium saccharolyticum

family: Clostridiaceae

genus: Clostridium

species: Clostridium saccharolyticum

strain designation: TDO


description: domain/bacteria

family: Nocardiaceae

full scientific name: Nocardia asteroides (Eppinger 1891) Blanchard 1896 (Approved Lists 1980)

genus: Nocardia

species: Nocardia asteroides

synonym: Cladothrix asteroides


description: domain/bacteria

full scientific name: Aeromonas simiae Harf-Monteil et al. 2004

genus: Aeromonas

species: Aeromonas simiae

description: Aeromonas simiae partial 16S rRNA gene, strain IBS S6652


description: domain/bacteria

full scientific name: Nocardia brasiliensis (Lindenberg 1909) Pinoy 1913 (Approved Lists 1980)

species: Nocardia brasiliensis

synonym: Discomyces brasiliensis


description: domain/bacteria

full scientific name: Mycobacterium ratisbonense Berekaa and Steinbüchel 2000

species: Mycobacterium ratisbonense


family: Not assigned to family

order: Not assigned to order

species: Nocardia tenuis


description: domain/bacteria

family: Anaerovoracaceae

full scientific name: Mogibacterium vescum Nakazawa et al. 2000

genus: Mogibacterium

order: Peptostreptococcales

species: Mogibacterium vescum

family: Eubacteriales, not assigned to family

description: Mogibacterium vescum gene for 16S rRNA, partial sequence, strain:ATCC 700697

description: Mogibacterium vescum gene for 16S ribosomal RNA, partial sequence, strain: JCM 11203


description: domain/bacteria

family: Actinomycetaceae

full scientific name: Schaalia meyeri (Cato et al. 1984 ex Prévot 1938) Nouioui et al. 2018

genus: Schaalia

order: Actinomycetales

species: Schaalia meyeri

synonym: Actinomyces meyeri


description: domain/bacteria

family: Thermomonosporaceae

full scientific name: Actinomadura madurae (Vincent 1894) Lechevalier and Lechevalier 1970 (Approved Lists 1980)

genus: Actinomadura

order: Streptosporangiales

species: Actinomadura madurae

synonym: Streptothrix madurae


description: domain/bacteria

family: Pseudomonadaceae

full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980)

genus: Pseudomonas

order: Pseudomonadales

species: Pseudomonas aeruginosa

synonym: Pseudomonas paraeruginosa

synonym: Bacterium aeruginosum


description: domain/bacteria

family: Eubacteriaceae

full scientific name: Pseudoramibacter alactolyticus (Prévot and Taffanel 1942) Willems and Collins 1996

genus: Pseudoramibacter

species: Pseudoramibacter alactolyticus

synonym: Ramibacterium alactolyticum

synonym: Eubacterium alactolyticum


description: domain/bacteria

family: Erythrobacteraceae

full scientific name: Qipengyuania vulgaris (Ivanova et al. 2006) Xu et al. 2020

genus: Qipengyuania

order: Sphingomonadales

species: Qipengyuania vulgaris

synonym: Erythrobacter vulgaris

genus: Erythrobacter

species: Erythrobacter vulgaris


description: domain/bacteria

family: Staphylococcaceae

full scientific name: Staphylococcus aureus Rosenbach 1884 (Approved Lists 1980)

genus: Staphylococcus

order: Caryophanales

species: Staphylococcus aureus

synonym: Staphylococcus aureus subsp. anaerobius

synonym: Staphylococcus roterodami


description: domain/bacteria

family: Bacillaceae

full scientific name: Alkalihalobacillus algicola (Ivanova et al. 2004) Patel and Gupta 2020

genus: Alkalihalobacillus

species: Alkalihalobacillus algicola

synonym: Bacillus algicola

synonym: Guptibacillus algicola

synonym: Pseudalkalibacillus algicola

genus: Bacillus

species: Bacillus algicola

description: Bacillus sp. KMM 3737 16S ribosomal RNA gene, partial sequence

description: Bacillus algicola partial 16S rRNA gene, strain KMM 3737, isolate AB423f


description: domain/bacteria

family: Neisseriaceae

full scientific name: Neisseria lactamica corrig. Hollis et al. 1969 (Approved Lists 1980)

genus: Neisseria

order: Neisseriales

species: Neisseria lactamica

synonym: Neisseria lactamicus


description: domain/bacteria

full scientific name: Neisseria gonorrhoeae (Zopf 1885) Trevisan 1885 (Approved Lists 1980)

species: Neisseria gonorrhoeae

synonym: Merismopedia gonorrhoeae


description: domain/bacteria

family: Enterobacteriaceae

full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

genus: Escherichia

species: Escherichia coli

synonym: Bacillus coli


description: domain/bacteria

full scientific name: Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

genus: Salmonella

species: Salmonella enterica

synonym: Bacillus typhimurium

synonym: Bacillus enteritidis

synonym: Salmonella enteritidis

synonym: Salmonella paratyphi

synonym: Salmonella typhi

synonym: Salmonella typhimurium

synonym: Bacillus typhi

synonym: Bacillus choleraesuis

synonym: Salmonella choleraesuis


description: domain/bacteria

family: Streptococcaceae

full scientific name: Streptococcus agalactiae Lehmann and Neumann 1896 (Approved Lists 1980)

genus: Streptococcus

order: Lactobacillales

species: Streptococcus agalactiae

synonym: Streptococcus difficile

synonym: Streptococcus difficilis


description: domain/bacteria

family: Veillonellaceae

full scientific name: Veillonella montpellierensis Jumas-Bilak et al. 2004

genus: Veillonella

order: Veillonellales

species: Veillonella montpellierensis

description: Veillonella sp. ADV 2216.03 16S ribosomal RNA gene, partial sequence.


genus: Nocardia

species: Nocardia paraguayensis


description: domain/bacteria

family: Streptomycetaceae

full scientific name: Streptomyces hygroscopicus (Jensen 1931) Yüntsen et al. 1956 (Approved Lists 1980)

genus: Streptomyces

order: Kitasatosporales

species: Streptomyces hygroscopicus

synonym: Streptomyces endus

synonym: Actinomyces hygroscopicus

order: Streptomycetales

description: Streptomyces hygroscopicus subsp. duamyceticus gene for 16S rRNA, partial sequence, strain: NBRC 16552

description: Streptomyces hygroscopicus duamyceticus JCM4427


description: domain/bacteria

family: Thermoanaerobacteraceae

full scientific name: Carboxydibrachium pacificum corrig. Sokolova et al. 2001

genus: Carboxydibrachium

order: Thermoanaerobacterales

species: Carboxydibrachium pacificum

synonym: Caldanaerobacter subterraneus subsp. pacificum

synonym: Caldanaerobacter subterraneus subsp. pacificus

synonym: Carboxydobrachium pacificum

genus: Caldanaerobacter


description: domain/bacteria

family: Halomonadaceae

full scientific name: Halomonas aquamarina (ZoBell and Upham 1944) Dobson and Franzmann 1996

genus: Halomonas

order: Oceanospirillales

species: Halomonas aquamarina

synonym: Achromobacter aquamarinus

synonym: Vreelandella aquamarina

synonym: Alcaligenes aquamarinus

synonym: Alcaligenes aestus

synonym: Deleya aquamarina

synonym: Halomonas meridiana

synonym: Alcaligenes faecalis subsp. homari

synonym: Halomonas axialensis

synonym: Deleya aesta

species: Halomonas meridiana


description: domain/bacteria


description: domain/bacteria

family: Rhizobiaceae

full scientific name: Rhizobium leguminosarum (Frank 1879) Frank 1889 (Approved Lists 1980)

genus: Rhizobium

order: Hyphomicrobiales

species: Rhizobium leguminosarum

synonym: Rhizobium indigoferae

synonym: Rhizobium trifolii

synonym: Schinzia leguminosarum

species: Rhizobium indigoferae

description: Rhizobium indigoferae 16S ribosomal RNA gene, partial sequence.

description: Rhizobium indigoferae strain CCBAU 71042 16S ribosomal RNA gene, partial sequence.

description: ASM1308760v1 assembly for Rhizobium indigoferae CCBAU 71042

description: ASM3455481v1 assembly for Rhizobium indigoferae CIP 108029


description: domain/bacteria

family: Oscillospiraceae

full scientific name: Fastidiosipila sanguinis Falsen et al. 2005

genus: Fastidiosipila

species: Fastidiosipila sanguinis

family: Hungateiclostridiaceae


description: domain/bacteria

full scientific name: Virgibacillus xinjiangensis Jeon et al. 2010

genus: Virgibacillus

species: Virgibacillus xinjiangensis


description: domain/bacteria

full scientific name: Virgibacillus halophilus An et al. 2007

species: Virgibacillus halophilus

synonym: Tigheibacillus halophilus


description: domain/bacteria

family: Yersiniaceae

full scientific name: Serratia bockelmannii Cho et al. 2020

genus: Serratia

order: Enterobacterales

species: Serratia bockelmannii


description: domain/bacteria

family: Clostridiaceae

full scientific name: Clostridium tetani (Flügge 1886) Bergey et al. 1923 (Approved Lists 1980)

genus: Clostridium

order: Eubacteriales

species: Clostridium tetani

synonym: Bacillus tetani


family: Not assigned to family

order: Not assigned to order

species: Nocardia leishmanii


description: domain/bacteria

full scientific name: Streptococcus pyogenes Rosenbach 1884 (Approved Lists 1980)

species: Streptococcus pyogenes


description: domain/bacteria

family: Bacteroidaceae

full scientific name: Bacteroides fragilis (Veillon and Zuber 1898) Castellani and Chalmers 1919 (Approved Lists 1980)

genus: Bacteroides

order: Bacteroidales

species: Bacteroides fragilis

synonym: Bacteroides hominis

synonym: Bacillus fragilis


description: domain/bacteria

full scientific name: Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887 (Approved Lists 1980)

genus: Klebsiella

species: Klebsiella pneumoniae

synonym: Hyalococcus pneumoniae


description: domain/bacteria

family: Vibrionaceae

full scientific name: Vibrio crassostreae Faury et al. 2004

genus: Vibrio

order: Vibrionales

species: Vibrio crassostreae

description: Vibrio crassostreae partial 16S rRNA gene, strain LGP 8


description: domain/bacteria


description: domain/bacteria

family: Pasteurellaceae

full scientific name: Pasteurella haemolytica corrig. Newsom and Cross 1932 (Approved Lists 1980)

genus: Pasteurella

order: Pasteurellales

species: Pasteurella haemolytica

synonym: Pasteurella hemolytica

synonym: Mannheimia haemolytica

genus: Mannheimia

species: Mannheimia haemolytica


culture collection no.: CIP A161

description: domain/bacteria

family: Lactobacillaceae

full scientific name: Lactiplantibacillus plantarum (Orla-Jensen 1919) Zheng et al. 2020

genus: Lactiplantibacillus

species: Lactiplantibacillus plantarum

synonym: Streptobacterium plantarum

synonym: Lactobacillus plantarum

synonym: Lactobacillus arizonensis

genus: Lactobacillus

species: Lactobacillus plantarum


description: domain/bacteria

full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

genus: Escherichia

species: Escherichia coli

synonym: Bacillus coli


description: domain/bacteria

family: Caryophanaceae

full scientific name: Kurthia zopfii (Kurth 1883) Trevisan 1885 (Approved Lists 1980)

genus: Kurthia

species: Kurthia zopfii

synonym: Bacterium zopfii

family: Planococcaceae


description: domain/bacteria

full scientific name: Clostridium thermautotrophicum corrig. Wiegel et al. 1982

species: Clostridium thermautotrophicum

synonym: Clostridium thermaceticum

synonym: Moorella thermoacetica

synonym: Neomoorella thermoacetica

synonym: Clostridium thermoautotrophicum

synonym: Clostridium thermoaceticum

synonym: Moorella thermoautotrophica

genus: Moorella

species: Moorella thermoautotrophica

description: Clostridium thermoautotrophicum (DSM 1974) 16S ribosomal RNA (16S rRNA) gene

description: Moorella thermoautotrophica strain DSM 1974 16S-23S ribosomal RNA intergenic spacer and 23S ribosomal RNA gene, partial sequence.

description: Moorella thermoautotrophica 16S rRNA gene, strain DSM 1974

description: ASM812189v1 assembly for Neomoorella thermoacetica ATCC 33924


description: domain/bacteria

family: Bacillaceae

full scientific name: Bacillus subtilis (Ehrenberg 1835) Cohn 1872 (Approved Lists 1980)

genus: Bacillus

species: Bacillus subtilis

synonym: Vibrio subtilis

strain designation: AA 4


description: domain/bacteria

family: Enterobacteriaceae

full scientific name: Enterobacter cloacae (Jordan 1890) Hormaeche and Edwards 1960 (Approved Lists 1980)

genus: Enterobacter

species: Enterobacter cloacae

synonym: Bacillus cloacae

synonym: Bacterium cloacae

synonym: Cloaca cloacae


description: domain/bacteria

family: Microbacteriaceae

full scientific name: Microbacterium esteraromaticum (Omelianski 1923) Takeuchi and Hatano 1998

genus: Microbacterium

order: Micrococcales

species: Microbacterium esteraromaticum

synonym: Aureobacterium esteraromaticum

synonym: Bacterium esteraromaticum

synonym: Flavobacterium esteraromaticum


description: domain/bacteria

family: Mycobacteriaceae

full scientific name: Mycobacterium septicum Schinsky et al. 2000

genus: Mycobacterium

order: Mycobacteriales

species: Mycobacterium septicum

synonym: Mycolicibacterium septicum


description: domain/bacteria

family: Nitrobacteraceae

full scientific name: Bradyrhizobium lupini Peix et al. 2015

genus: Bradyrhizobium

species: Bradyrhizobium lupini

family: Bradyrhizobiaceae


description: domain/bacteria

full scientific name: Lacticaseibacillus casei (Orla-Jensen 1916) Zheng et al. 2020

genus: Lacticaseibacillus

species: Lacticaseibacillus casei

synonym: Caseobacterium vulgare

synonym: Lactobacillus casei

species: Lactobacillus casei


description: domain/bacteria

family: Staphylococcaceae

full scientific name: Staphylococcus aureus Rosenbach 1884 (Approved Lists 1980)

genus: Staphylococcus

order: Caryophanales

species: Staphylococcus aureus

synonym: Staphylococcus aureus subsp. anaerobius

synonym: Staphylococcus roterodami

description: ASM354605v1 assembly for Staphylococcus aureus CIP 108540


description: domain/bacteria

family: Veillonellaceae

full scientific name: Dialister propionicifaciens Jumas-Bilak et al. 2005

genus: Dialister

species: Dialister propionicifaciens

description: Dialister propionicifaciens strain ADV 3202.03 16S ribosomal RNA gene, partial sequence.


description: domain/bacteria

family: Selenomonadaceae

full scientific name: <I>Selenomonas</I> von Prowazek 1913 (Approved Lists 1980)

genus: Selenomonas

order: Selenomonadales

species: Selenomonas sp.

synonym: Ancyromonas


genus: Halomonas

species: Halomonas phocea


description: domain/bacteria

strain designation: AA 16


description: domain/bacteria

family: Weeksellaceae

full scientific name: Chryseobacterium joostei Hugo et al. 2003

genus: Chryseobacterium

order: Flavobacteriales

species: Chryseobacterium joostei

family: Flavobacteriaceae

strain designation: UOF CR694


description: domain/bacteria

strain designation: UOF CR1094


description: domain/bacteria

order: Lactobacillales

species: Lactiplantibacillus plantarum

synonym: Streptobacterium plantarum

synonym: Lactobacillus plantarum

synonym: Lactobacillus arizonensis

species: Lactobacillus plantarum


description: domain/bacteria

full scientific name: Elizabethkingia meningoseptica (King 1959) Kim et al. 2005

genus: Elizabethkingia

species: Elizabethkingia meningoseptica

synonym: Flavobacterium meningosepticum

synonym: Chryseobacterium meningosepticum

description: Chryseobacterium meningosepticum strain NTU 870424-IL 16S ribosomal RNA gene, partial sequence.


description: domain/bacteria

strain designation: LDVH AR107


culture collection no.: CIP A158

description: domain/bacteria

full scientific name: Lactobacillus rhamnosus (Hansen 1968) Collins et al. 1989

species: Lactobacillus rhamnosus

synonym: Lacticaseibacillus rhamnosus

synonym: Lactobacillus casei subsp. rhamnosus

strain designation: Nills


description: domain/bacteria

family: Kytococcaceae

full scientific name: Kytococcus schroeteri Becker et al. 2002

genus: Kytococcus

species: Kytococcus schroeteri

strain designation: ROG 140


description: domain/bacteria


description: domain/bacteria

family: Alcaligenaceae

full scientific name: Bordetella pertussis (Bergey et al. 1923) Moreno-López 1952 (Approved Lists 1980)

genus: Bordetella

order: Burkholderiales

species: Bordetella pertussis

synonym: Hemophilus pertussis


description: domain/bacteria

species: Bacillus subtilis

synonym: Vibrio subtilis

strain designation: AA 5


description: domain/bacteria

family: Bartonellaceae

full scientific name: Bartonella australis Fournier et al. 2007

genus: Bartonella

species: Bartonella australis


description: domain/bacteria

family: Streptococcaceae

full scientific name: Streptococcus thermophilus Orla-Jensen 1919 (Approved Lists 1980)

genus: Streptococcus

species: Streptococcus thermophilus

synonym: Streptococcus salivarius subsp. thermophilus


description: domain/bacteria

strain designation: AA 51


description: domain/bacteria

full scientific name: Bartonella queenslandensis Gundi et al. 2009

species: Bartonella queenslandensis


description: domain/bacteria

full scientific name: Bacillus subtilis (Ehrenberg 1835) Cohn 1872 (Approved Lists 1980)

strain designation: AA 57


description: domain/bacteria

family: Yersiniaceae

full scientific name: Yersinia pseudotuberculosis (Pfeiffer 1889) Smith and Thal 1965 (Approved Lists 1980)

genus: Yersinia

species: Yersinia pseudotuberculosis

synonym: Bacillus pseudotuberkulosis

synonym: Pasteurella lymphangitidis


description: domain/bacteria

full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

genus: Escherichia

species: Escherichia coli

synonym: Bacillus coli


description: domain/bacteria

family: Moraxellaceae

full scientific name: Moraxella catarrhalis (Frosch and Kolle 1896) Henriksen and Bøvre 1968 (Approved Lists 1980)

genus: Moraxella

order: Pseudomonadales

species: Moraxella catarrhalis

synonym: Branhamella catarrhalis

synonym: Mikrokokkus catarrhalis

synonym: Moraxella veridica


class: Spirochaetia

description: domain/bacteria

family: Borreliaceae

full scientific name: Borrelia burgdorferi Johnson et al. 1984

genus: Borrelia

keyword: phylum/spirochaetota

order: Spirochaetales

phylum: Spirochaetota

species: Borrelia burgdorferi

synonym: Borreliella burgdorferi

class: Spirochaetes

phylum: Spirochaetes

strain designation: CA 8


description: domain/bacteria


class: Erysipelotrichia

description: domain/bacteria

family: Erysipelotrichaceae

full scientific name: Erysipelothrix rhusiopathiae (Migula 1900) Buchanan 1918 (Approved Lists 1980)

genus: Erysipelothrix

order: Erysipelotrichales

species: Erysipelothrix rhusiopathiae

synonym: Bacterium rhusiopathiae


class: Actinomycetes

description: domain/bacteria

full scientific name: Mycobacterium crocinum Hennessee et al. 2009

genus: Mycobacterium

species: Mycobacterium crocinum

synonym: Mycolicibacterium crocinum


family: Not assigned to family

genus: Azoarcus

species: Azoarcus alkani


description: domain/bacteria

family: Bacillaceae

full scientific name: Bacillus licheniformis (Weigmann 1898) Chester 1901 (Approved Lists 1980)

genus: Bacillus

species: Bacillus licheniformis

synonym: Clostridium licheniforme


species: Yersinia phocaeense


class: Gammaproteobacteria

description: domain/bacteria

full scientific name: Yersinia massiliensis Merhej et al. 2008

species: Yersinia massiliensis

description: Yersinia massiliensis strain CCUG 53444 16S ribosomal RNA gene, partial sequence.

description: CIP109352 assembly for Yersinia massiliensis


description: domain/bacteria

strain designation: AA 62


description: domain/bacteria

strain designation: AA 64


description: domain/bacteria

description: 52592_C01 assembly for Yersinia pseudotuberculosis NCTC8580


description: domain/bacteria

family: Mycobacteriaceae

full scientific name: Mycobacterium avium Chester 1901 (Approved Lists 1980)

species: Mycobacterium avium

synonym: Mycobacterium bouchedurhonense

class: Actinobacteria


description: domain/bacteria

family: Pasteurellaceae

full scientific name: Haemophilus massiliensis Lo et al. 2017

genus: Haemophilus

species: Haemophilus massiliensis


class: Deinococci

description: domain/bacteria

family: Deinococcaceae

full scientific name: Deinococcus peraridilitoris Rainey et al. 2007

genus: Deinococcus

keyword: phylum/deinococcota

order: Deinococcales

phylum: Deinococcota

species: Deinococcus peraridilitoris

phylum: Deinococcus-Thermus


class: Betaproteobacteria

description: domain/bacteria

family: Zoogloeaceae

full scientific name: Aromatoleum tolulyticum (Zhou et al. 1995) Rabus et al. 2019

genus: Aromatoleum

order: Rhodocyclales

species: Aromatoleum tolulyticum

synonym: Azoarcus tolulyticus


genus: Pseudomonas

species: Pseudomonas neoaurantiaca


culture collection no.: CIP A108

class: Bacilli

description: domain/bacteria

family: Listeriaceae

full scientific name: Listeria monocytogenes (Murray et al. 1926) Pirie 1940 (Approved Lists 1980)

genus: Listeria

species: Listeria monocytogenes

synonym: Bacterium monocytogenes


description: domain/bacteria

family: Staphylococcaceae

full scientific name: Staphylococcus lugdunensis Freney et al. 1988

genus: Staphylococcus

species: Staphylococcus lugdunensis


description: domain/bacteria

full scientific name: Staphylococcus epidermidis (Winslow and Winslow 1908) Evans 1916 (Approved Lists 1980)

species: Staphylococcus epidermidis

synonym: Albococcus epidermidis


description: domain/bacteria

family: Enterobacteriaceae

full scientific name: Enterobacter cloacae (Jordan 1890) Hormaeche and Edwards 1960 (Approved Lists 1980)

genus: Enterobacter

order: Enterobacterales

species: Enterobacter cloacae

synonym: Bacillus cloacae

synonym: Bacterium cloacae

synonym: Cloaca cloacae


description: domain/bacteria

full scientific name: Actinobacillus ureae (Jones 1962) Mutters et al. 1986

genus: Actinobacillus

species: Actinobacillus ureae

synonym: Pasteurella ureae

description: 55147_H01 assembly for Actinobacillus ureae NCTC10220


description: domain/bacteria

family: Lactobacillaceae

full scientific name: Lactobacillus jensenii Gasser et al. 1970 (Approved Lists 1980)

genus: Lactobacillus

species: Lactobacillus jensenii


description: domain/bacteria

full scientific name: Pediococcus pentosaceus Mees 1934 (Approved Lists 1980)

genus: Pediococcus

species: Pediococcus pentosaceus


description: domain/bacteria

full scientific name: Bacillus mycoides Flügge 1886 (Approved Lists 1980)

species: Bacillus mycoides

synonym: Bacillus weihenstephanensis

synonym: Bacillus cereus subsp. mycoides

synonym: Bacillus hominis

strain designation: BMK


description: domain/bacteria

family: Vibrionaceae

full scientific name: Vibrio vulnificus (Reichelt et al. 1979) Farmer 1980

genus: Vibrio

species: Vibrio vulnificus

synonym: Beneckea vulnifica


description: domain/bacteria

full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

genus: Escherichia

species: Escherichia coli

synonym: Bacillus coli


class: Negativicutes

description: domain/bacteria

family: Veillonellaceae

full scientific name: Negativicoccus succinicivorans Marchandin et al. 2010

genus: Negativicoccus

order: Veillonellales

species: Negativicoccus succinicivorans

description: Negativicoccus succinicivorans strain ADV 12/01/04-B-1195 16S ribosomal RNA gene, partial sequence.


description: domain/bacteria

full scientific name: Vibrio alginolyticus (Miyamoto et al. 1961) Sakazaki 1968 (Approved Lists 1980)

species: Vibrio alginolyticus

synonym: Beneckea alginolytica

synonym: Oceanomonas alginolytica

description: Vibrio alginolyticus strain VM2 16S ribosomal RNA gene, partial sequence.


description: domain/bacteria

species: Mycobacterium avium


description: domain/bacteria

full scientific name: Lactiplantibacillus plantarum (Orla-Jensen 1919) Zheng et al. 2020

genus: Lactiplantibacillus

species: Lactiplantibacillus plantarum

synonym: Streptobacterium plantarum

synonym: Lactobacillus plantarum

synonym: Lactobacillus arizonensis

species: Lactobacillus plantarum

description: Lactobacillus plantarum gene for 16S rRNA, partial sequence, strain: JCM 1100


class: Alphaproteobacteria

description: domain/bacteria

family: Rhizobiaceae

full scientific name: Ensifer garamanticus Merabet et al. 2010

genus: Ensifer

order: Hyphomicrobiales

species: Ensifer garamanticus

synonym: Sinorhizobium garamanticum


description: domain/bacteria

family: Roseobacteraceae

full scientific name: Phaeobacter inhibens Martens et al. 2006

genus: Phaeobacter

order: Rhodobacterales

species: Phaeobacter inhibens

family: Rhodobacteraceae


description: domain/bacteria

family: Pseudomonadaceae

full scientific name: Pseudomonas cuatrocienegasensis Escalante et al. 2009

species: Pseudomonas cuatrocienegasensis

strain designation: 3N A.E. Escalante


description: domain/bacteria

full scientific name: Ensifer numidicus Merabet et al. 2010

species: Ensifer numidicus

synonym: Sinorhizobium numidicum


genus: Alcaligenes

order: Not assigned to order

species: Alcaligenes tolerans


description: domain/bacteria


description: domain/bacteria

family: Lachnospiraceae

full scientific name: Enterocloster clostridioformis (Burri and Ankersmit 1906) Haas and Blanchard 2020

genus: Enterocloster

order: Eubacteriales

species: Enterocloster clostridioformis

synonym: Clostridium clostridioforme

synonym: Bacteroides clostridiiformis

synonym: Bacterium clostridiiforme

synonym: Clostridium clostridiiforme

family: Clostridiaceae

genus: Clostridium

species: Clostridium clostridioforme


class: Flavobacteriia

description: domain/bacteria

family: Weeksellaceae

full scientific name: Chryseobacterium indoltheticum (Campbell and Williams 1951) Vandamme et al. 1994

genus: Chryseobacterium

species: Chryseobacterium indoltheticum

synonym: Flavobacterium indoltheticum

family: Flavobacteriaceae


culture collection no.: CIP 109984, Van Reynan

description: domain/bacteria

full scientific name: Myroides odoratimimus Vancanneyt et al. 1996

genus: Myroides

species: Myroides odoratimimus


culture collection no.: CIP A94, CCUG 43566

description: domain/bacteria

family: Corynebacteriaceae

full scientific name: Corynebacterium pseudotuberculosis (Buchanan 1911) Eberson 1918 (Approved Lists 1980)

genus: Corynebacterium

order: Mycobacteriales

species: Corynebacterium pseudotuberculosis

synonym: Bacillus pseudotuberculosis

strain designation: Méd


class: Sphingobacteriia

description: domain/bacteria

family: Sphingobacteriaceae

full scientific name: Sphingobacterium multivorum (Holmes et al. 1981) Yabuuchi et al. 1983

genus: Sphingobacterium

order: Sphingobacteriales

species: Sphingobacterium multivorum

synonym: Flavobacterium multivorum

strain designation: Verdier


description: domain/bacteria

family: Erythrobacteraceae

full scientific name: Novosphingobium aromaticivorans corrig. (Balkwill et al. 1997) Takeuchi et al. 2001

genus: Novosphingobium

order: Sphingomonadales

species: Novosphingobium aromaticivorans

synonym: Novosphingobium stygium

synonym: Novosphingobium aromaticivorum

synonym: Sphingomonas stygia

synonym: Sphingomonas aromaticivorans

synonym: Novosphingobium stygiae

family: Sphingomonadaceae

strain designation: Trouvé


description: domain/bacteria

full scientific name: Lactobacillus rhamnosus (Hansen 1968) Collins et al. 1989

species: Lactobacillus rhamnosus

synonym: Lacticaseibacillus rhamnosus

synonym: Lactobacillus casei subsp. rhamnosus


description: domain/bacteria

full scientific name: Sphingobacterium spiritivorum (Holmes et al. 1982) Yabuuchi et al. 1983

species: Sphingobacterium spiritivorum

synonym: Flavobacterium yabuuchiae

synonym: Flavobacterium spiritivorum


description: domain/bacteria

strain designation: Jacob


description: domain/bacteria

full scientific name: Lacticaseibacillus paracasei (Collins et al. 1989) Zheng et al. 2020

genus: Lacticaseibacillus

species: Lacticaseibacillus paracasei

synonym: Lactobacillus paracasei

species: Lactobacillus paracasei


class: Clostridia

description: domain/bacteria

family: Peptostreptococcaceae

full scientific name: Paraclostridium bifermentans (Weinberg and Séguin 1918) Sasi Jyothsna et al. 2016

genus: Paraclostridium

order: Peptostreptococcales

species: Paraclostridium bifermentans

synonym: Bacillus bifermentans

synonym: Clostridium bifermentans

species: Clostridium bifermentans


description: domain/bacteria

family: Bacillaceae

full scientific name: Aeribacillus pallidus (Scholz et al. 1988) Miñana-Galbis et al. 2010

genus: Aeribacillus

order: Caryophanales

species: Aeribacillus pallidus

synonym: Geobacillus pallidus

synonym: Bacillus pallidus

full scientific name: Geobacillus sp.

genus: Geobacillus

species: Geobacillus pallidus

description: ASM421035v1 assembly for Aeribacillus pallidus TD1


description: domain/bacteria

full scientific name: Bacillus subtilis (Ehrenberg 1835) Cohn 1872 (Approved Lists 1980)

genus: Bacillus

species: Bacillus subtilis

synonym: Vibrio subtilis


description: domain/bacteria

family: Lactobacillaceae

full scientific name: Lactobacillus gasseri Lauer and Kandler 1980

genus: Lactobacillus

order: Lactobacillales

species: Lactobacillus gasseri


description: domain/bacteria

family: Helicobacteraceae

full scientific name: Helicobacter mustelae (Fox et al. 1988) Goodwin et al. 1989

genus: Helicobacter

order: Campylobacterales

species: Helicobacter mustelae

synonym: Campylobacter pylori subsp. mustelae

synonym: Campylobacter mustelae

description: Helicobacter mustelae 16S ribosomal RNA gene, partial sequence.

description: H.mustelae gene for 16S ribosomal RNA (partial)

description: 51342_F02 assembly for Helicobacter mustelae NCTC12198

description: ASM9198v1 assembly for Helicobacter mustelae 12198


description: domain/bacteria

family: Streptococcaceae

full scientific name: Streptococcus pyogenes Rosenbach 1884 (Approved Lists 1980)

genus: Streptococcus

species: Streptococcus pyogenes

strain designation: Glossy, A39t6


culture collection no.: CIP A104

description: domain/bacteria

family: Alcaligenaceae

full scientific name: Bordetella pertussis (Bergey et al. 1923) Moreno-López 1952 (Approved Lists 1980)

genus: Bordetella

order: Burkholderiales

species: Bordetella pertussis

synonym: Hemophilus pertussis


description: domain/bacteria

strain designation: Glover

description: 41800_G01 assembly for Streptococcus pyogenes NCTC8314


description: domain/bacteria

family: Enterobacteriaceae

full scientific name: Shigella dysenteriae (Shiga 1897) Castellani and Chalmers 1919 (Approved Lists 1980)

genus: Shigella

species: Shigella dysenteriae

synonym: Bacillus dysentericus

synonym: Escherichia coli subsp. shigellae

description: Shigella dysenteriae strain CIP54.95


description: domain/bacteria

full scientific name: Streptococcus acidominimus Ayers and Mudge 1922 (Approved Lists 1980)

species: Streptococcus acidominimus


description: domain/bacteria

full scientific name: Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

genus: Salmonella

species: Salmonella enterica

synonym: Bacillus typhimurium

synonym: Bacillus enteritidis

synonym: Salmonella enteritidis

synonym: Salmonella paratyphi

synonym: Salmonella typhi

synonym: Salmonella typhimurium

synonym: Bacillus typhi

synonym: Bacillus choleraesuis

synonym: Salmonella choleraesuis


description: domain/bacteria

family: Yersiniaceae

full scientific name: Serratia nevei Cho et al. 2020

genus: Serratia

species: Serratia nevei


description: domain/bacteria

family: Legionellaceae

full scientific name: Legionella quateirensis Dennis et al. 1993

genus: Legionella

order: Legionellales

species: Legionella quateirensis

description: ASM146795v1 assembly for Legionella quateirensis ATCC 49507


description: domain/bacteria

family: Pasteurellaceae

full scientific name: Aggregatibacter actinomycetemcomitans (Klinger 1912) Nørskov-Lauritsen and Kilian 2006

genus: Aggregatibacter

order: Pasteurellales

species: Aggregatibacter actinomycetemcomitans

synonym: Actinobacillus actinomycetemcomitans

synonym: Bacterium actinomycetemcomitans

synonym: Haemophilus actinomycetemcomitans


description: domain/bacteria

full scientific name: Lactobacillus delbrueckii subsp. bulgaricus (Orla-Jensen 1919) Weiss et al. 1984

synonym: Lactobacillus bulgaricus

synonym: Thermobacterium bulgaricum


description: domain/bacteria

family: Actinomycetaceae

full scientific name: Arcanobacterium haemolyticum (ex MacLean et al. 1946) Collins et al. 1983

genus: Arcanobacterium

order: Actinomycetales

species: Arcanobacterium haemolyticum


description: domain/bacteria

family: Campylobacteraceae

full scientific name: Campylobacter fetus (Smith and Taylor 1919) Sebald and Véron 1963 (Approved Lists 1980)

genus: Campylobacter

species: Campylobacter fetus

synonym: Vibrio fetus

strain designation: Viain


class: Bacteroidia

description: domain/bacteria

family: Prevotellaceae

full scientific name: Alloprevotella tannerae (Moore et al. 1994) Downes et al. 2013

genus: Alloprevotella

order: Bacteroidales

species: Alloprevotella tannerae

synonym: Prevotella tannerae

description: Alloprevotella tannerae gene for 16S ribosomal RNA, partial sequence, strain: JCM 16135

description: Prevotella tannerae 16S rRNA gene, strain ATCC 51259

description: ASM15999v1 assembly for Alloprevotella tannerae ATCC 51259

description: Prevotella tannerae ATCC 51259


description: domain/bacteria


description: domain/bacteria

family: Clostridiaceae

full scientific name: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937 (Approved Lists 1980)

genus: Clostridium

species: Clostridium perfringens

synonym: Clostridioides perfringens

synonym: Bacillus perfringens


description: domain/bacteria

family: Neisseriaceae

full scientific name: Neisseria meningitidis (Albrecht and Ghon 1901) Murray 1929 (Approved Lists 1980)

genus: Neisseria

order: Neisseriales

species: Neisseria meningitidis

synonym: Micrococcus meningitidis


description: domain/bacteria

full scientific name: Kingella denitrificans Snell and Lapage 1976 (Approved Lists 1980)

genus: Kingella

species: Kingella denitrificans


description: domain/bacteria

family: Balneatricaceae

full scientific name: Balneatrix alpica Dauga et al. 1993

genus: Balneatrix

order: Oceanospirillales

species: Balneatrix alpica

family: Oceanospirillaceae


description: domain/bacteria

full scientific name: Streptococcus suis (ex Elliott 1966) Kilpper-Bälz and Schleifer 1987

species: Streptococcus suis


description: domain/bacteria

full scientific name: Yersinia kristensenii Bercovier et al. 1981

genus: Yersinia

order: Enterobacterales

species: Yersinia kristensenii


description: domain/bacteria

full scientific name: Serratia marcescens Bizio 1823 (Approved Lists 1980)

species: Serratia marcescens

synonym: Serratia marcescens subsp. sakuensis

description: Serratia marcescens strain ATCC 274 16S ribosomal RNA gene, partial sequence.

description: ASM993629v1 assembly for Serratia marcescens ATCC 274

description: Serratia marcescens ATCC 274


description: domain/bacteria

full scientific name: Actinomyces bovis Harz 1877 (Approved Lists 1980)

genus: Actinomyces

species: Actinomyces bovis


description: domain/bacteria

full scientific name: Lactiplantibacillus paraplantarum (Curk et al. 1996) Zheng et al. 2020

genus: Lactiplantibacillus

species: Lactiplantibacillus paraplantarum

synonym: Lactobacillus paraplantarum

genus: Lactobacillus

species: Lactobacillus paraplantarum


description: domain/bacteria

full scientific name: Lactiplantibacillus plantarum (Orla-Jensen 1919) Zheng et al. 2020

species: Lactiplantibacillus plantarum

synonym: Streptobacterium plantarum

synonym: Lactobacillus plantarum

synonym: Lactobacillus arizonensis

species: Lactobacillus plantarum

strain designation: 61 AF


description: domain/bacteria

full scientific name: Serratia nematodiphila Zhang et al. 2009

species: Serratia nematodiphila


description: domain/bacteria

strain designation: 61 AL


description: domain/bacteria

full scientific name: Lactobacillus rhamnosus (Hansen 1968) Collins et al. 1989

species: Lactobacillus rhamnosus

synonym: Lacticaseibacillus rhamnosus

synonym: Lactobacillus casei subsp. rhamnosus


class: Epsilonproteobacteria

description: domain/bacteria

strain designation: Am


description: domain/bacteria

full scientific name: Lactobacillus crispatus (Brygoo and Aladame 1953) Moore and Holdeman 1970 (Approved Lists 1980)

species: Lactobacillus crispatus

synonym: Eubacterium crispatum

description: Lactobacillus crispatus strain CIP 104459 16S ribosomal RNA gene, partial sequence.

description: ASM807931v1 assembly for Lactobacillus crispatus CIP 104459


description: domain/bacteria

full scientific name: Lactobacillus gasseri Lauer and Kandler 1980

species: Lactobacillus gasseri


description: domain/bacteria

full scientific name: Lactobacillus delbrueckii subsp. indicus Dellaglio et al. 2005


description: domain/bacteria

full scientific name: Streptococcus pneumoniae (Klein 1884) Chester 1901 (Approved Lists 1980)

genus: Streptococcus

species: Streptococcus pneumoniae

synonym: Micrococcus pneumoniae

synonym: Staphylococcus pneumoniae


description: domain/bacteria

full scientific name: Prevotella enoeca Moore et al. 1994

genus: Prevotella

species: Prevotella enoeca

synonym: Hoylesella enoeca

description: Prevotella enoeca gene for 16S ribosomal RNA, partial sequence, strain: JCM 12259

description: Prevotella enoeca 16S rRNA gene, strain ATCC 51261

description: Prevotella enoeca strain JCM 12259 16S ribosomal RNA gene, partial sequence.

description: ASM61340v1 assembly for Hoylesella enoeca JCM 12259


description: domain/bacteria

family: Enterococcaceae

full scientific name: Enterococcus faecalis (Andrewes and Horder 1906) Schleifer and Kilpper-Bälz 1984

genus: Enterococcus

species: Enterococcus faecalis

synonym: Streptococcus faecalis


culture collection no.: CIP A105

description: domain/bacteria

family: Corynebacteriaceae

full scientific name: Corynebacterium pseudodiphtheriticum Lehmann and Neumann 1896 (Approved Lists 1980)

genus: Corynebacterium

species: Corynebacterium pseudodiphtheriticum

strain designation: diphteroid Hofmann IV


description: domain/bacteria

family: Staphylococcaceae

full scientific name: Staphylococcus pasteuri Chesneau et al. 1993

genus: Staphylococcus

species: Staphylococcus pasteuri


description: domain/bacteria

family: Mycobacteriaceae

full scientific name: Mycobacterium aurum Tsukamura 1966 (Approved Lists 1980)

genus: Mycobacterium

species: Mycobacterium aurum

synonym: Mycolicibacterium aurum


description: domain/bacteria

family: Bacillaceae

full scientific name: Bacillus pumilus Meyer and Gottheil 1901 (Approved Lists 1980)

genus: Bacillus

species: Bacillus pumilus


description: domain/bacteria

family: Streptococcaceae

strain designation: CNRP 4241


description: domain/bacteria

strain designation: CNRP 4266


description: domain/bacteria

full scientific name: Streptococcus agalactiae Lehmann and Neumann 1896 (Approved Lists 1980)

species: Streptococcus agalactiae

synonym: Streptococcus difficile

synonym: Streptococcus difficilis


description: domain/bacteria

family: Nocardiaceae

full scientific name: Rhodococcus erythropolis (Gray and Thornton 1928) Goodfellow and Alderson 1979 (Approved Lists 1980)

genus: Rhodococcus

species: Rhodococcus erythropolis

synonym: Rhodococcus jialingiae

synonym: Rhodococcus degradans

synonym: Rhodococcus qingshengii

synonym: Nocardia erythropolis

synonym: Rhodococcus enclensis

synonym: Mycobacterium erythropolis

synonym: Rhodococcus baikonurensis

synonym: Nocardia calcarea

synonym: Arthrobacter picolinophilus

description: Rhodococcus erythropolis IAM 1399 16S ribosomal RNA gene, partial sequence

description: Rhodococcus erythropolis gene for 16S rRNA, partial sequence, strain: JCM 2892.


description: domain/bacteria

family: Enterobacteriaceae

full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

genus: Escherichia

species: Escherichia coli

synonym: Bacillus coli


description: domain/bacteria

family: Flavobacteriaceae

full scientific name: Flavobacterium columnare (Bernardet and Grimont 1989 ex Davis 1922) Bernardet et al. 1996

genus: Flavobacterium

order: Flavobacteriales

species: Flavobacterium columnare

synonym: Cytophaga columnaris

synonym: Flexibacter columnaris

strain designation: LSU


description: domain/bacteria

description: Rhodococcus erythropolis gene for 16S rRNA, partial sequence, strain: JCM 2894.

description: Rhodococcus sp. ATCC 15961 16S ribosomal RNA gene, partial sequence.


description: domain/bacteria

full scientific name: Bacillus subtilis (Ehrenberg 1835) Cohn 1872 (Approved Lists 1980)

species: Bacillus subtilis

synonym: Vibrio subtilis

strain designation: FE 6


description: domain/bacteria

description: Rhodococcus erythropolis gene for 16S rRNA, partial sequence, strain: JCM 2895.

description: ASM2434980v1 assembly for Rhodococcus erythropolis JCM 2895


description: domain/bacteria

full scientific name: Rhodococcus fascians (Tilford 1936) Goodfellow 1984

species: Rhodococcus fascians

synonym: Phytomonas fascians

synonym: Rhodococcus luteus

synonym: Corynebacterium fascians

synonym: Rhodococcoides fascians


description: domain/bacteria

full scientific name: Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887 (Approved Lists 1980)

genus: Klebsiella

species: Klebsiella pneumoniae

synonym: Hyalococcus pneumoniae


description: domain/bacteria

family: Hafniaceae

full scientific name: Hafnia alvei Møller 1954 (Approved Lists 1980)

genus: Hafnia

species: Hafnia alvei

strain designation: mutant 7


description: domain/bacteria

full scientific name: Corynebacterium diphtheriae (Kruse 1886) Lehmann and Neumann 1896 (Approved Lists 1980)

species: Corynebacterium diphtheriae

synonym: Bacillus diphtheriae


description: domain/bacteria

family: Lactobacillaceae

full scientific name: Lactobacillus acidophilus (Moro 1900) Hansen and Mocquot 1970 (Approved Lists 1980)

species: Lactobacillus acidophilus

synonym: Bacillus acidophilus


description: domain/bacteria

family: Propionibacteriaceae

full scientific name: Cutibacterium acnes (Gilchrist 1900) Scholz and Kilian 2016

genus: Cutibacterium

order: Propionibacteriales

species: Cutibacterium acnes

synonym: Propionibacterium acnes

synonym: Bacillus acnes


description: domain/bacteria

family: Comamonadaceae

full scientific name: Comamonas terrigena (ex Hugh 1962) De Vos et al. 1985

genus: Comamonas

species: Comamonas terrigena

synonym: Pseudomonas terrigena

synonym: Comamonas terrigena

synonym: Comamonas percolans


description: domain/bacteria

strain designation: PM 25


description: domain/bacteria

full scientific name: Streptococcus gordonii Kilian et al. 1989

species: Streptococcus gordonii


description: domain/bacteria

full scientific name: Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

genus: Salmonella

species: Salmonella enterica

synonym: Salmonella choleraesuis

synonym: Bacillus typhimurium

synonym: Salmonella enteritidis

synonym: Salmonella paratyphi

synonym: Salmonella typhi

synonym: Bacillus enteritidis

synonym: Bacillus typhi

synonym: Bacillus choleraesuis

synonym: Salmonella typhimurium


description: domain/bacteria

family: Carnobacteriaceae

full scientific name: Carnobacterium gallinarum Collins et al. 1987

genus: Carnobacterium

species: Carnobacterium gallinarum


description: domain/bacteria

full scientific name: Shigella boydii Ewing 1949 (Approved Lists 1980)

genus: Shigella

species: Shigella boydii


description: domain/bacteria


description: domain/bacteria

full scientific name: Lactobacillus helveticus (Orla-Jensen 1919) Bergey et al. 1925 (Approved Lists 1980)

genus: Lactobacillus

species: Lactobacillus helveticus

synonym: Lactobacillus suntoryeus

synonym: Thermobacterium helveticum

description: Lactobacillus helveticus gene for 16S rRNA, partial sequence, strain: JCM 1554.

description: ASM286827v1 assembly for Lactobacillus helveticus ATCC 12046


description: domain/bacteria

family: Aeromonadaceae

full scientific name: Aeromonas salmonicida (Lehmann and Neumann 1896) Griffin et al. 1953 (Approved Lists 1980)

genus: Aeromonas

order: Aeromonadales

species: Aeromonas salmonicida

synonym: Bacterium salmonicida

description: Aeromonas salmonicida strain CIP 57.50 16S ribosomal RNA gene, partial sequence.

description: 58529_F01 assembly for Aeromonas salmonicida 3012STDY7122732


description: domain/bacteria

family: Moraxellaceae

full scientific name: Moraxella atlantae Bøvre et al. 1976 (Approved Lists 1980)

genus: Moraxella

order: Pseudomonadales

species: Moraxella atlantae

synonym: Faucicola atlantae


description: domain/bacteria

family: Peptostreptococcaceae

full scientific name: Paraclostridium bifermentans (Weinberg and Séguin 1918) Sasi Jyothsna et al. 2016

genus: Paraclostridium

species: Paraclostridium bifermentans

synonym: Bacillus bifermentans

synonym: Clostridium bifermentans

family: Clostridiaceae

order: Eubacteriales

strain designation: TM


description: domain/bacteria

full scientific name: Clostridium chauvoei (Arloing et al. 1887) Scott 1928 (Approved Lists 1980)

genus: Clostridium

species: Clostridium chauvoei

synonym: Bacterium chauvoei

strain designation: Vallée


description: domain/bacteria

family: Pseudomonadaceae

full scientific name: Pseudomonas fragi (Eichholz 1902) Gruber 1905 (Approved Lists 1980)

genus: Pseudomonas

species: Pseudomonas fragi

synonym: Bacterium fragi


description: domain/bacteria

family: Actinomycetaceae

full scientific name: Schaalia meyeri (Cato et al. 1984 ex Prévot 1938) Nouioui et al. 2018

genus: Schaalia

species: Schaalia meyeri

synonym: Actinomyces meyeri


description: domain/bacteria

family: Staphylococcaceae

full scientific name: Staphylococcus aureus Rosenbach 1884 (Approved Lists 1980)

genus: Staphylococcus

species: Staphylococcus aureus

synonym: Staphylococcus aureus subsp. anaerobius

synonym: Staphylococcus roterodami


description: domain/bacteria

full scientific name: Hafnia alvei Møller 1954 (Approved Lists 1980)

species: Hafnia alvei

strain designation: mutant 17


description: domain/bacteria


description: domain/bacteria

full scientific name: Stutzerimonas stutzeri (Lehmann and Neumann 1896) Lalucat et al. 2022

genus: Stutzerimonas

species: Stutzerimonas stutzeri

synonym: Bacterium stutzeri

synonym: Pseudomonas stutzeri

species: Pseudomonas stutzeri


description: domain/bacteria

full scientific name: Streptococcus thermophilus Orla-Jensen 1919 (Approved Lists 1980)

genus: Streptococcus

species: Streptococcus thermophilus

synonym: Streptococcus salivarius subsp. thermophilus

description: Streptococcus thermophilus strain CIP 67.56 16S ribosomal RNA gene, partial sequence.


description: domain/bacteria

family: Vibrionaceae

full scientific name: Vibrio cholerae Pacini 1854 (Approved Lists 1980)

genus: Vibrio

order: Vibrionales

species: Vibrio cholerae

synonym: Vibrio albensis


description: domain/bacteria

family: Shewanellaceae

full scientific name: Shewanella algae corrig. Simidu et al. 1990

genus: Shewanella

order: Alteromonadales

species: Shewanella algae

synonym: Shewanella alga

synonym: Shewanella upenei

synonym: Shewanella haliotis


description: domain/bacteria

full scientific name: Lactobacillus jensenii Gasser et al. 1970 (Approved Lists 1980)

order: Lactobacillales

species: Lactobacillus jensenii

description: Lactobacillus jensenii gene for 16S rRNA, partial sequence, strain: JCM 11035.


description: domain/bacteria

full scientific name: Acinetobacter baumannii Bouvet and Grimont 1986

genus: Acinetobacter

species: Acinetobacter baumannii


description: domain/bacteria

full scientific name: Acinetobacter junii Bouvet and Grimont 1986

species: Acinetobacter junii

synonym: Acinetobacter plantarum

synonym: Acinetobacter grimontii


description: domain/bacteria

full scientific name: Moraxella lacunata (Eyre 1900) Lwoff 1939 (Approved Lists 1980)

species: Moraxella lacunata

synonym: Bacillus lacunatus


description: domain/bacteria

family: Bacillaceae

full scientific name: Bacillus subtilis (Ehrenberg 1835) Cohn 1872 (Approved Lists 1980)

genus: Bacillus

order: Caryophanales

species: Bacillus subtilis

synonym: Vibrio subtilis

strain designation: AA 2


description: domain/bacteria

family: Enterobacteriaceae

full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

genus: Escherichia

species: Escherichia coli

synonym: Bacillus coli


description: domain/bacteria

family: Pasteurellaceae

full scientific name: Aggregatibacter aphrophilus (Khairat 1940) Nørskov-Lauritsen and Kilian 2006

genus: Aggregatibacter

species: Aggregatibacter aphrophilus

synonym: Haemophilus paraphrophilus

synonym: Haemophilus aphrophilus

strain designation: Funagli

description: Aggregatibacter aphrophilus strain ATCC 29241 16S ribosomal RNA gene, partial sequence.


description: domain/bacteria

full scientific name: Vibrio alginolyticus (Miyamoto et al. 1961) Sakazaki 1968 (Approved Lists 1980)

species: Vibrio alginolyticus

synonym: Beneckea alginolytica

synonym: Oceanomonas alginolytica


description: domain/bacteria

full scientific name: Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

genus: Salmonella

species: Salmonella enterica

synonym: Bacillus typhimurium

synonym: Bacillus enteritidis

synonym: Salmonella enteritidis

synonym: Salmonella paratyphi

synonym: Salmonella typhi

synonym: Salmonella typhimurium

synonym: Bacillus typhi

synonym: Bacillus choleraesuis

synonym: Salmonella choleraesuis


description: domain/bacteria

full scientific name: Clostridium sporogenes (Metchnikoff 1908) Bergey et al. 1923 (Approved Lists 1980)

species: Clostridium sporogenes

synonym: Bacillus sporogenes


description: domain/bacteria

full scientific name: Clostridioides difficile (Hall and O'Toole 1935) Lawson et al. 2016

genus: Clostridioides

order: Peptostreptococcales

species: Clostridioides difficile

synonym: Peptoclostridium difficile

synonym: Bacillus difficilis

synonym: Clostridium difficile


culture collection no.: CIP A102

description: domain/bacteria

family: Corynebacteriaceae

full scientific name: Corynebacterium diphtheriae (Kruse 1886) Lehmann and Neumann 1896 (Approved Lists 1980)

genus: Corynebacterium

order: Mycobacteriales

species: Corynebacterium diphtheriae

synonym: Bacillus diphtheriae


description: domain/bacteria

description: Clostridium difficile strain VPI 10463 16S ribosomal RNA gene, partial sequence.

description: cduab assembly for Clostridioides difficile ATCC 43255

description: ASM199515v1 assembly for Clostridioides difficile VPI 10463

description: ASM1523863v1 assembly for Clostridioides difficile ATCC 43255


description: domain/bacteria

family: Peptoniphilaceae

full scientific name: Anaerococcus vaginalis (Li et al. 1992) Ezaki et al. 2001

genus: Anaerococcus

order: Tissierellales

species: Anaerococcus vaginalis

synonym: Peptostreptococcus vaginalis


description: domain/bacteria

full scientific name: Actinomyces israelii corrig. (Kruse 1896) Lachner-Sandoval 1898 (Approved Lists 1980)

genus: Actinomyces

order: Actinomycetales

species: Actinomyces israelii

synonym: Streptothrix israelii

synonym: Actinobacterium israelii

synonym: Actinomyces israeli

synonym: Streptothrix israeli

synonym: Actinobacterium israeli


description: domain/bacteria

full scientific name: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937 (Approved Lists 1980)

genus: Clostridium

species: Clostridium perfringens

synonym: Clostridioides perfringens

synonym: Bacillus perfringens


description: domain/bacteria

family: Bifidobacteriaceae

full scientific name: Bifidobacterium bifidum (Tissier 1900) Orla-Jensen 1924 (Approved Lists 1980)

genus: Bifidobacterium

order: Bifidobacteriales

species: Bifidobacterium bifidum

synonym: Bacillus bifidus

synonym: Bacterium bifidum

description: Bifidobacterium bifidum gene for 16S rRNA, partial sequence, strain: JCM 7004.

description: ASM357395v1 assembly for Bifidobacterium bifidum LMG 13195 JCM 7004


description: domain/bacteria

full scientific name: Shewanella baltica Ziemke et al. 1998

species: Shewanella baltica


description: domain/bacteria

synonym: Bacillus coli

strain designation: M 500 Hfr


description: domain/bacteria

family: Lysobacteraceae

full scientific name: Xanthomonas campestris (Pammel 1895) Dowson 1939 (Approved Lists 1980)

genus: Xanthomonas

order: Lysobacterales

species: Xanthomonas campestris

synonym: Bacillus campestris

synonym: Phytomonas campestris

family: Xanthomonadaceae


culture collection no.: CIP A237

description: domain/bacteria

full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980)

genus: Pseudomonas

species: Pseudomonas aeruginosa

synonym: Pseudomonas paraeruginosa

synonym: Bacterium aeruginosum

strain designation: S


description: domain/bacteria

family: Flavobacteriaceae

full scientific name: Myroides odoratimimus Vancanneyt et al. 1996

genus: Myroides

species: Myroides odoratimimus


description: domain/bacteria

full scientific name: Haemophilus ducreyi (Neveu-Lemaire 1921) Bergey et al. 1923 (Approved Lists 1980)

genus: Haemophilus

order: Pasteurellales

species: Haemophilus ducreyi

synonym: Pseudactinobacillus ducreyi

synonym: Coccobacillus ducreyi


description: domain/bacteria

family: Yersiniaceae

full scientific name: Serratia fonticola Gavini et al. 1979 (Approved Lists 1980)

genus: Serratia

order: Enterobacterales

species: Serratia fonticola

synonym: Serratia glossinae


culture collection no.: CIP A238

description: domain/bacteria

full scientific name: Staphylococcus aureus Rosenbach 1884 (Approved Lists 1980)

genus: Staphylococcus

species: Staphylococcus aureus

synonym: Staphylococcus aureus subsp. anaerobius

synonym: Staphylococcus roterodami

strain designation: Londres


description: domain/bacteria

full scientific name: Shigella flexneri Castellani and Chalmers 1919 (Approved Lists 1980)

genus: Shigella

species: Shigella flexneri


description: domain/bacteria

synonym: Bacillus diphtheriae


description: domain/bacteria

family: Gemellaceae

full scientific name: Gemella haemolysans (Thjøtta and Bøe 1938) Berger 1960 (Approved Lists 1980)

genus: Gemella

species: Gemella haemolysans

synonym: Neisseria haemolysans

family: Caryophanales, not assigned to family


description: domain/bacteria

full scientific name: Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887 (Approved Lists 1980)

genus: Klebsiella

species: Klebsiella pneumoniae

synonym: Hyalococcus pneumoniae


description: domain/bacteria

full scientific name: Arcanobacterium haemolyticum (ex MacLean et al. 1946) Collins et al. 1983

genus: Arcanobacterium

species: Arcanobacterium haemolyticum

description: A.haemolyticum gene for 16S rRNA

description: 55685_C01 assembly for Arcanobacterium haemolyticum NCTC9697


description: domain/bacteria

family: Promicromonosporaceae

full scientific name: Oerskovia jenensis Stackebrandt et al. 2002

genus: Oerskovia

order: Micrococcales

species: Oerskovia jenensis


description: domain/bacteria

family: Lactobacillaceae

full scientific name: Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020

genus: Ligilactobacillus

species: Ligilactobacillus salivarius

synonym: Lactobacillus salivarius

synonym: Lactobacillus salivarius subsp. salicinius

genus: Lactobacillus

species: Lactobacillus salivarius


description: domain/bacteria

description: 38977_F01 assembly for Klebsiella pneumoniae NCTC5056


description: domain/bacteria

full scientific name: Lacticaseibacillus paracasei (Collins et al. 1989) Zheng et al. 2020

genus: Lacticaseibacillus

species: Lacticaseibacillus paracasei

synonym: Lactobacillus paracasei

species: Lactobacillus paracasei


description: domain/bacteria

family: Streptococcaceae

full scientific name: Streptococcus gallolyticus Osawa et al. 1996

genus: Streptococcus

species: Streptococcus gallolyticus

synonym: Streptococcus caprinus

strain designation: AmMS 119

description: Streptococcus gallolyticus subsp. gallolyticus strain CIP 103560 16S ribosomal RNA gene, partial sequence.


description: domain/bacteria

family: Enterococcaceae

full scientific name: Enterococcus gallinarum (Bridge and Sneath 1982) Collins et al. 1984

genus: Enterococcus

species: Enterococcus gallinarum

synonym: Streptococcus gallinarum

description: 43071_H02 assembly for Enterococcus gallinarum NCTC12360

description: Enterococcus gallinarum strain NCTC12360


description: domain/bacteria

full scientific name: Pasteurella multocida (Lehmann and Neumann 1899) Rosenbusch and Merchant 1939 (Approved Lists 1980)

genus: Pasteurella

species: Pasteurella multocida

synonym: Micrococcus gallicidus

synonym: Pasteurella gallicida

synonym: Bacterium multocidum


description: domain/bacteria

full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

genus: Escherichia

species: Escherichia coli

synonym: Bacillus coli