{
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    "scope": "Bacterial and archaeal species, infraspecific taxa, strain deposits and genome identifiers",
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          "ncbi_names",
          "ncbi_type_material",
          "ncbi_merged_ids"
        ],
        "coverage": "Full bacterial and archaeal backbone, original name classes, type-material assertions and merged IDs.",
        "limitation": "Species and below become taxon records; higher ranks remain lineage. Names are not proof of strain identity.",
        "name": "NCBI Taxonomy",
        "status": "complete_snapshot",
        "url": "https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/new_taxdump/"
      },
      {
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          "ncbi_refseq",
          "ncbi_genbank_historical",
          "ncbi_refseq_historical"
        ],
        "coverage": "Current and historical prokaryotic assembly metadata; unresolved taxonomy retained; all supplied columns.",
        "limitation": "Only latest assemblies with an explicit registered culture identifier supply direct strain links.",
        "name": "NCBI GenBank and RefSeq assemblies",
        "status": "complete_snapshot",
        "url": "https://ftp.ncbi.nlm.nih.gov/genomes/ASSEMBLY_REPORTS/"
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          "gtdb_mappings",
          "gtdb_genomes"
        ],
        "coverage": "All RS232 species clusters and bacterial/archaeal genomes, including clusters without an NCBI mapping.",
        "limitation": "MAGs and species clusters are not physical strain deposits; GTDB taxonomy remains a separate assertion.",
        "name": "GTDB",
        "status": "complete_snapshot",
        "url": "https://data.gtdb.ecogenomic.org/releases/release232/232.0/"
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        "catalogs": [
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        "coverage": "All names and available API annotations in the pinned kg-microbe transform, including unmapped names.",
        "limitation": "This is the recorded upstream extraction, not a claim to the live authenticated LPSN service.",
        "name": "LPSN",
        "status": "complete_pinned_transform",
        "url": "https://lpsn.dsmz.de/"
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        ],
        "coverage": "Complete public ID census and current v2 identity, deposit and sequence records.",
        "limitation": "One wholly empty census export row has no source ID and is reported separately.",
        "name": "BacDive",
        "status": "complete_snapshot",
        "url": "https://hub.dsmz.de/wiki/bacdive/api/"
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        "catalogs": [
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        "coverage": "Every captured public strain, its own deposits, taxon assertions and sequence records, independent of BacDive overlap.",
        "limitation": "SI-ID, SI-DP and DOI versions remain distinct; only explicitly named eligible deposits supply genome links.",
        "name": "StrainInfo",
        "status": "complete_snapshot",
        "url": "https://straininfo.dsmz.de/"
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        "catalogs": [
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          "seqcode_type_genomes"
        ],
        "coverage": "Complete public name census and type-genome endpoint, including uncultivated species names.",
        "license": "CC-BY-4.0",
        "license_url": "https://registry.seqco.de/help/open_data",
        "limitation": "Discovery names are not all validly published; source statuses and genome types are retained independently.",
        "name": "SeqCode Registry",
        "status": "complete_snapshot",
        "url": "https://registry.seqco.de/page/api"
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          "gold_analysis_project"
        ],
        "coverage": "Every public workbook organism, sequencing project and analysis, including supplied IMG identifiers and GenBank accessions.",
        "limitation": "This is complete for the pinned GOLD workbook, not for every IMG database or private genome.",
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        "coverage": "Complete 2025-05 source metadata, all statuses, samples, runs, analysis accessions, checksums and supplied download URLs.",
        "limitation": "Evidenced strain/genome crosslinks are a subset of the full catalog; shared BioSample is not assembly equivalence.",
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        "coverage": "Complete public bacterial and archaeal genome census with identity, culture, taxonomy, assembly, sample and project metadata.",
        "limitation": "Strain links require whole registered culture identifiers; private genomes and non-prokaryotic records are excluded.",
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        "limitation": "The documented API retrieves analysis-job results. No direct complete TYGS genome-table capture is asserted.",
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        "limitation": "Ribosomal accessions are sequence records, not genome assemblies; no complete SILVA sequence catalog is claimed.",
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        "status": "external_index",
        "url": "https://www.arb-silva.de/documentation/silva-taxonomy"
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