ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paraprevotella sp.

ncbi_submitter: Nanjing Agricultural University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_organism_name: Microbacterium sp. NPDC057944

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: Streptomyces umbrinus


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: rhizosphere soil culture M52

ncbi_organism_name: Lysinibacillus sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_assembly_level: Contig

ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0168

ncbi_submitter: Broad Institute


ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Candidatus Polarisedimenticolia;x__unclassified Candidatus Polarisedimenticolia;s__Candidatus Polarisedimenticolia bacterium


gtdb_representative: t

ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: coral

ncbi_organism_name: Tropicibacter sp. R15_0

ncbi_submitter: University of Konstanz


ncbi_country: USA: Richmond; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Candidatus Thiosymbion sp.

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Candidatus Thiosymbion;x__unclassified Candidatus Thiosymbion;s__Candidatus Thiosymbion sp.


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Serratia sarumanii

ncbi_submitter: University of Calgary


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured bacterium


ncbi_country: USA: Massachusetts

ncbi_organism_name: Clostridium tetani

ncbi_submitter: FDA, Center for Biologics Evaluation and Research


ncbi_organism_name: Escherichia coli 88.1467

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_assembly_level: Chromosome

ncbi_organism_name: Mangrovimonas cancribranchiae

ncbi_refseq_category: reference genome

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Environmental Microbiology OMICS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: Netherlands

ncbi_isolation_source: brewery environment

ncbi_organism_name: Fructilactobacillus lindneri

ncbi_submitter: Technische Universitaet Muenchen


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhizobium sp. Q54

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Germany

ncbi_isolation_source: Mastitis

ncbi_strain_identifiers: CVUAS 1678

ncbi_submitter: Federal Institute for Risk Assessment


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Fujita Health University School of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG759

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Megamonas funiformis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Prevotella sp. UBA2444

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_submitter: DS-I Africa


ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_assembly_name: freshwater MAG --- Ja_bin-5828

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Kocuria sp.

ncbi_submitter: marine college, shandong university


ncbi_assembly_name: Rumen uncultured genome RUG10835

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_isolation_source: urine

ncbi_submitter: Swansea University


ncbi_country: China: Shangdong

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: South China Agricultural University


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Akkermansia sp.

ncbi_submitter: INRA


ncbi_isolation_source: medical leech homogenate

ncbi_organism_name: Erysipelothrix aquatica

ncbi_submitter: Robert Koch Institute

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Escherichia coli


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Panama: Bocas del Toro

ncbi_isolation_source: gill

ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: University of California, Davis


ncbi_isolation_source: Human

ncbi_organism_name: Achromobacter animicus

ncbi_submitter: GHENT UNIVERSITY


ncbi_country: Australia

ncbi_isolation_source: Feces

ncbi_organism_name: Bacteroidales bacterium K10

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium K10


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: metagenome

ncbi_organism_name: Candidatus Harrysmithiimonas galli

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Bacilli;o__;f__;g__Candidatus Harrysmithiimonas;s__Candidatus Harrysmithiimonas galli

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__Bacilli incertae sedis;g__Candidatus Harrysmithiimonas;s__Candidatus Harrysmithiimonas galli


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: China: Chen mai

ncbi_organism_name: Streptomyces sp. HNM0645

ncbi_submitter: Guilin Medical University


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_country: China: Shanghai City

ncbi_isolation_source: feces

ncbi_submitter: Yangzhou University


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Institute of Biotechnology, Univerity of Helsinki


ncbi_country: China:Chongqing beibei jinyun mountain

ncbi_isolation_source: Spring water

ncbi_organism_name: Kosakonia sp. CCTCC M2018092

ncbi_submitter: College of Pharmaceutical Sciences, Southwest University


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Heater Creek arm; Detroit Lake; Oregon

ncbi_isolation_source: lake water

ncbi_organism_name: Dolichospermum sp. DET50

ncbi_submitter: Oregon State University


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 45075_10

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Czech Republic: Praha

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus sp. AFS075034

ncbi_submitter: UNC Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AFS075034


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Abiotrophia defectiva


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Second Affiliated Hospial of Zhejiang University, School of Medicine


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Kocuria flava

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: Netherlands

ncbi_isolation_source: Primary rapid sand filter

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: Radboud University


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Palmer LTER


ncbi_country: Finland: University of Jyvaskyla

ncbi_isolation_source: experimental exposure to phage

ncbi_organism_name: Flavobacterium columnare

ncbi_submitter: University of Jyvaskyla


ncbi_country: Germany: Wietze

ncbi_isolation_source: oil-contaminated soil

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Agrilutibacter terrestris

ncbi_submitter: Kyonggi Univ.


ncbi_country: Singapore

ncbi_isolation_source: not known

ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Lebanon

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Lebanese American University


ncbi_submitter: Centre de Bioinformatique de Bordeaux


ncbi_isolation_source: lung

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: Germany: Helgoland harbor

ncbi_isolation_source: marine surface water; North Sea

ncbi_organism_name: Rhodobacteraceae bacterium SB2

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: USA: Boston

ncbi_isolation_source: ocean water

ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Oman

ncbi_isolation_source: PL FL

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Ministry of Health


ncbi_country: Peru

ncbi_submitter: SC


ncbi_country: Brazil: Petrolandia

ncbi_isolation_source: lymph node

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_organism_name: Rubrobacteraceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_country: USA: TX

ncbi_isolation_source: feces parrot

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolate: AOP7_D2_surf _bin _11

ncbi_organism_name: Pseudoalteromonas nigrifaciens

ncbi_strain_identifiers: AOP7_D2_surf _bin _11

ncbi_submitter: Genoscope


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Desulfobulbales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1409

ncbi_submitter: Broad Institute


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: Bahamas: Pain Pond; Cockburn Town; San Salvador

ncbi_isolation_source: gill

ncbi_organism_name: Candidatus Thiodiazotropha taylori

ncbi_submitter: Clemson University


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Russia

ncbi_isolation_source: pelvic cavity of a patient with pyosalpinx

ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Federal Budget Institution of Science Central Research Institute for Epidemiology


ncbi_isolation_source: not available


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Litorimonas cladophorae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: USA: Greene County; Ohio

ncbi_isolation_source: groundwater well (0.1 _m fraction)

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium Gr01-1014_25


ncbi_country: USA: Plum Island; MA

ncbi_isolation_source: Filtered seawater (5uM filter)

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_isolation_source: sediments

ncbi_organism_name: Nitrospira sp. UBA5698

ncbi_submitter: University of Queensland


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sefako Makgatho Health Sciences University


ncbi_country: USA: Massachusetts; Boston


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Stenotrophomonas sp.


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Algibacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Danvile; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Australia: Shark Bay; Hameline Pool

ncbi_isolation_source: microbial mat from hypersaline water environment

ncbi_organism_name: Chitinivibrionales bacterium

ncbi_submitter: University of New South Wales


ncbi_submitter: Hangzhou Medical University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Planktophila lacus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila lacus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila lacus


ncbi_country: Russia: Moscow

ncbi_isolation_source: joint fluid

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: China

ncbi_isolation_source: Respiratory Medicine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Guangzhou Medical University


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Staphylococcus aureus M1198

ncbi_submitter: Broad Institute


ncbi_country: USA: Altavista; VA

ncbi_isolation_source: PCB contaminated wastewater treatment lagoon sediment microcosms

ncbi_organism_name: Porphyromonadaceae bacterium

ncbi_submitter: University of Iowa


ncbi_organism_name: Flexilinea sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Salmonella sp. 2018-SM963

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_organism_name: Aquabacterium sp. A3

ncbi_submitter: Guangdong Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__unclassified Aquabacterium;s__Aquabacterium sp. A3


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Synechococcales cyanobacterium

ncbi_submitter: EPFL


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: SHANDONG UNIVERSITY


ncbi_submitter: DS-I Africa


ncbi_organism_name: uncultured Actinomycetota bacterium


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Peribacillus simplex

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: EMG


ncbi_submitter: University of Surrey


ncbi_organism_name: uncultured Hyphomonas sp.


ncbi_organism_name: Rhodococcus sp. NPDC058532

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. NPDC058532


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Tidjanibacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Salibacteraceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_submitter: Federal University of Sao Paulo


ncbi_organism_name: Myxococcales bacterium


ncbi_organism_name: Barnesiella intestinihominis


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured Candidatus Brevefilum sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Anaerolineaceae;g__Candidatus Brevifilum;x__environmental samples;s__uncultured Candidatus Brevefilum sp.


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Institut de Ciencies del Mar

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolate: AOP36_A1_surf _bin _38

ncbi_organism_name: Flaviflexus sp.

ncbi_strain_identifiers: AOP36_A1_surf _bin _38

ncbi_submitter: Genoscope


ncbi_organism_name: Staphylococcus capitis


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Negativicutes bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Nanjing

ncbi_isolation_source: laboratory-scale bioreactor denitrification and anammox communities

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: NanJing University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Fibrobacterota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;x__unclassified Fibrobacterota;s__Fibrobacterota bacterium


ncbi_submitter: Global Health Research Unit

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mariprofundaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Streptomyces nigra

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Faecalibacterium sp.


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium 4484_18


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: China Agricultural University


ncbi_country: USA: Austin

ncbi_organism_name: Gilliamella sp. Choc6-1

ncbi_submitter: University of Texas at Austin


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_isolation_source: gut

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a a 3.0 um filter and then through a 0.2 um filter

ncbi_organism_name: Proteobacteria bacterium CG1_02_64_396

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium CG1_02_64_396


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Shenzhen

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. Bc227

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. Bc227


ncbi_isolation_source: Cattle

ncbi_organism_name: Agromyces sp. Marseille-P2726

ncbi_submitter: URMITE


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0159

ncbi_submitter: Broad Institute


ncbi_organism_name: Ruminococcoides intestinihominis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Peru: Madre de Dios; Puerto Maldonado

ncbi_isolation_source: midgut wall

ncbi_organism_name: Candidatus Tokpelaia sp. JSC161

ncbi_submitter: University of Montana

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;x__Hyphomicrobiales incertae sedis;g__Candidatus Tokpelaia;x__unclassified Candidatus Tokpelaia;s__Candidatus Tokpelaia sp. JSC161


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: PA

ncbi_isolation_source: snow king intact peach

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Shewanella piezotolerans WP3

ncbi_submitter: James D. Watson Institute of Genome Sciences


ncbi_country: Switzerland: Lucerne

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_organism_name: Nitrospira sp.


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Candidatus Egerieousia excrementavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Egerieousia;s__Candidatus Egerieousia excrementavium


ncbi_isolation_source: feces

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Senegalimassilia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: China: Shanghai

ncbi_isolation_source: lung

ncbi_organism_name: Bordetella bronchiseptica

ncbi_submitter: Chinese Academy of Agricultural Science


ncbi_assembly_name: IMG-taxon 2590828856 annotated assembly

ncbi_organism_name: Methylobacterium sp. 174MFSha1.1

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10523

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Sinobacteraceae bacterium


ncbi_country: Lithuania: Vilnius

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universiti Malaya


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: PulseNet USA


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Lund University


ncbi_country: USA: New York; Rochester

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Drexel


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Edinburgh


ncbi_isolation_source: food production metagenome

ncbi_organism_name: Alkalibaculum bacchi


ncbi_country: USA: Oregon

ncbi_isolation_source: Cheese rind

ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: Tufts University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Thermodesulfovibrionales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Malaysia: Johor

ncbi_isolation_source: tissue from diabetec foot ulcer

ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: Institute for medical research


ncbi_submitter: Nanjing Agriculture University


ncbi_country: Colombia: Cali

ncbi_organism_name: Bacillus tropicus

ncbi_strain_identifiers: INS 045

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Ningxia Medical University General Hospital


ncbi_country: China: Beihai

ncbi_isolation_source: soil organic matter [ENVO:04000008]

ncbi_organism_name: Streptomyces beihaiensis

ncbi_submitter: Guangxi Minzu University


ncbi_isolation_source: Sputum

ncbi_submitter: Toho University


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_country: China: Shaanxi

ncbi_isolation_source: Diseased shoots

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Tidjanibacter sp.


ncbi_assembly_name: Rumen uncultured genome RUG746

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_country: India

ncbi_isolation_source: Landfill

ncbi_submitter: CSIR-NEERI


ncbi_organism_name: Brevundimonas poindexterae

ncbi_submitter: Tang lab


ncbi_country: Colombia: Pereira

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_country: USA: TX

ncbi_isolation_source: estuarine water

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: Switzerland:Lake Cadagno

ncbi_isolation_source: Lake Cadagno chemocline

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Chlamydiales bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Parma


ncbi_country: China: Shaanxi; Xi an

ncbi_isolation_source: stool

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Malaysia

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_assembly_name: Rumen uncultured genome RUG10895

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Zurich


ncbi_country: USA: California; Middletown

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: CHU Bicetre


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Hong Kong: Telegraph Bay

ncbi_isolation_source: Food-waste compost

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: California; Modesto

ncbi_organism_name: Gemmatimonadota bacterium


ncbi_country: China: Hohhot

ncbi_isolation_source: sour goat milk

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: university


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CSUF


ncbi_country: Finland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_country: Germany

ncbi_organism_name: Escherichia coli

ncbi_submitter: Robert Koch Institute


ncbi_country: Germany: Aachen

ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Limosilactobacillus oris

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_country: Germany: Tuebingen

ncbi_isolation_source: Nasal cavity

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: Eberhard Karls Universitaet Tuebingen


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: pond water

ncbi_organism_name: Bacillus sp. MMG021

ncbi_submitter: San Diego State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. MMG021


ncbi_country: Mexico

ncbi_submitter: Beijing Institute of Genomics, CAS


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Bacillus cytotoxicus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shandong

ncbi_isolation_source: farmland

ncbi_organism_name: Lysobacter sp. M2-1

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_submitter: Jiangxi Academy of Agricultural Sciences


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_submitter: US DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pectobacteriaceae;g__Pectobacterium;s__Pectobacterium carotovorum;sb__Pectobacterium carotovorum subsp. carotovorum;x__Pectobacterium carotovorum subsp. carotovorum PC1


ncbi_country: Japan:Hokkaido; Nopporo Forest Park

ncbi_isolation_source: soil

ncbi_organism_name: Desulfofustis limnaeus

ncbi_strain_identifiers: PPLL

ncbi_submitter: Akita Prefectural University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA35

ncbi_submitter: Broad Institute


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Wuerzburg


ncbi_organism_name: Gallibacterium anatis 7990

ncbi_submitter: University of Copenhagen


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes ABC020006103


ncbi_country: Ecuador: Quito

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zurita & Zurita Laboratorios


ncbi_country: South Korea: Yeoju

ncbi_isolation_source: Cucumber

ncbi_organism_name: Paracidovorax citrulli

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Balneolales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_assembly_name: IMG-taxon 2651870106 annotated assembly

ncbi_organism_name: Aureimonas jatrophae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Segatella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Hainan

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Raoultella terrigena

ncbi_submitter: South China Sea Institute of Oceanology


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Sao Paulo - Faculty of Pharmacy


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Institute of Disease Control and Prevention, Academy of Military Medical Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: DOE JGI


ncbi_country: Australia: Queensland

ncbi_isolation_source: laboratory culture after 20 days induced resistance against Colistin

ncbi_submitter: The University of Queensland


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Dorea sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium AF10-20

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: University of Queensland


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Curtobacterium sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Peru

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Comenius University Science Park


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: porcine tonsil microbiota

ncbi_organism_name: Rothia nasimurium

ncbi_submitter: Wageningen University and Research


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: fermented herbage

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: CGMCC 8198

ncbi_submitter: Tianjin University of Science&Technology


ncbi_assembly_name: IMG-taxon 2585428086 annotated assembly

ncbi_organism_name: Desulfofundulus thermosubterraneus DSM 16057

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: food; clams

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 557928


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: South Korea: Chonnam; Shinan

ncbi_isolation_source: solar altern

ncbi_organism_name: Aquibacillus saliphilus

ncbi_submitter: Mokwon University


ncbi_country: South Korea

ncbi_organism_name: Escherichia coli NCCP15647

ncbi_submitter: KRIBB


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Pseudomonas sp. AM4(2022)

ncbi_submitter: University of Warsaw, Faculty of Biology, Institute of Microbiology


ncbi_isolation_source: Fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSERM UMR 1137


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Coprococcus catus

ncbi_submitter: BGI-Shenzhen


ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Stenotrophomonas sp.


ncbi_country: China: Jiangsu Nanjing

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Weifang

ncbi_isolation_source: sebaceous gland

ncbi_organism_name: Corynebacterium pyruviciproducens

ncbi_submitter: Weifang Medical University


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus pasteurianus


ncbi_country: Germany: Cologne

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thiotrichaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: Australia: Brisbane

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: The University of Queensland


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: Ensifer sp. KUDG1

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Porticoccaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Leibniz Institute of Photonic Technology


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Wyoming


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Thammasat University


ncbi_organism_name: Pectobacterium sp. CHL-2024

ncbi_submitter: Yunnan Academy of Tobacco Agricultural Sciences


ncbi_organism_name: uncultured Anaerolinea sp.


ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: Labor Berlin - Charite Vivantes GmbH


ncbi_organism_name: Roseivirga sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Streptomyces sp. NPDC057367

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Rhizobium sp. 814_E9_N1_1

ncbi_submitter: VIB


ncbi_organism_name: uncultured Helicobacter sp.


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Mycoplasmopsis synoviae

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: marine

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Queensland


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Candidatus Scatocola faecipullorum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudohongiellaceae bacterium


ncbi_organism_name: Isoptericola sp. NPDC057391


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: OR

ncbi_isolation_source: ground turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_assembly_name: IMG-taxon 2595698248 annotated assembly

ncbi_organism_name: Daejeonella lutea

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Mukeunji

ncbi_organism_name: Weissella cibaria

ncbi_submitter: Kyunghee University


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Zhejiang university


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Ottowia thiooxydans

ncbi_submitter: DOE Joint Genome Institute


gtdb_type_species_of_genus: t

ncbi_assembly_name: IMG-taxon 2585427596 annotated assembly

ncbi_organism_name: Parasporobacterium paucivorans DSM 15970


ncbi_organism_name: Escherichia coli

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Magnetovibrio sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Microbacterium oxydans

ncbi_strain_identifiers: UPB 460

ncbi_submitter: Walloon Agricultural Research Centre


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: cave pool

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Caldisericota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Streptomyces sp. neau-D50


ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: USA: Seattle; WA

ncbi_isolation_source: blood

ncbi_organism_name: Stenotrophomonas pavanii

ncbi_submitter: JCVI


ncbi_isolate: metabat2_6730_HET_VAC_hifiasm.289 MAG

ncbi_strain_identifiers: metabat2_6730_HET_VAC_hifiasm.289 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: University of Vienna


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of California, Riverside


ncbi_country: USA: Philadelphia

ncbi_isolation_source: Retail fresh sage

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_organism_name: Clostridium sporogenes

ncbi_strain_identifiers: Colworth BL175

ncbi_submitter: University of Surrey


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0136

ncbi_submitter: Broad Institute


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Deltaproteobacteria bacterium


ncbi_country: Australia: Thorneside Wastewater Treatment Plant

ncbi_isolation_source: flocular biomat

ncbi_organism_name: Cyanobacteria bacterium UBA2320

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium UBA2320


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Salinisphaeraceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: SAHMRI


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Aarhus University


ncbi_country: China: Guangxi

ncbi_isolation_source: patient with infection

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Mycoplasma elephantis ATCC 51980

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Mitsuokella jalaludinii

ncbi_submitter: AAFC


ncbi_isolation_source: Distal colon

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_country: Germany

ncbi_isolation_source: lungs of a diseased parakeet

ncbi_organism_name: Chlamydia psittaci 84/55

ncbi_submitter: University of Maryland, Baltimore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;x__Chlamydia/Chlamydophila group;g__Chlamydia;s__Chlamydia psittaci;x__Chlamydia psittaci 84/55


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Chile: Antofagasta; El Tatio hot springs

ncbi_isolation_source: non-acidic hot spring microbial mat

ncbi_organism_name: Rivularia sp. T60_A2020_040

ncbi_submitter: Pontificia Universidad Catolica de Chile

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Rivulariaceae;g__Rivularia;x__unclassified Rivularia (in: cyanobacteria);s__Rivularia sp. T60_A2020_040


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: South Korea

ncbi_isolation_source: freshwater

ncbi_organism_name: Sphingorhabdus profundilacus

ncbi_submitter: Inha University


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal


ncbi_organism_name: Veillonella sp.


ncbi_country: China: Guangzhou

ncbi_organism_name: Corynebacterium parakroppenstedtii

ncbi_submitter: The Second Clinical College, Guangzhou University of Chinese Medicine


ncbi_organism_name: Achromobacter pulmonis


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: USA: Soudan Iron Mine; Minnesota

ncbi_isolation_source: brine fluids

ncbi_organism_name: Actibacterium sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: uncultured Ruminiclostridium sp.


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: USA: New York State

ncbi_isolation_source: Laboratory

ncbi_organism_name: Commensalibacter intestini

ncbi_submitter: Cornell University


ncbi_country: Canada: Scotian Shelf

ncbi_isolation_source: pooled samples from sponge host and sea water

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: SponGES


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: National University of Singapore


ncbi_organism_name: Alloprevotella tannerae

ncbi_submitter: EMG


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_isolation_source: metagenome

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom: Yatesbury House Farm; Avebury; Wilts; Wiltshire

ncbi_isolation_source: soil

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: The James Hutton Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Prolixibacteraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: South Africa: Cape Recife

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of Wisconsin, Madison


ncbi_organism_name: Nocardia vulneris

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Brazil: Belo Horizonte

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Massachusetts Eye and Ear Infirmary/Harvard Medical School


ncbi_country: USA: Los Angeles/Easton

ncbi_organism_name: Mycobacterium paraffinicum

ncbi_submitter: Uppsala University


ncbi_country: USA: DC

ncbi_isolation_source: Endotracheal aspirate

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: Chitinispirillum sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Opitutia bacterium UBA1977

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__unclassified Opitutia;s__Opitutia bacterium UBA1977


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Streptomyces griseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Colombia: Antioquia; Bello

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Antioquia


ncbi_country: USA: NH; DHMC

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Dartmouth College


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacillus sp. YIM B13585

ncbi_submitter: Yunnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. YIM B13585


ncbi_isolation_source: groundwater

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;x__unclassified Candidatus Margulisiibacteriota;s__Candidatus Margulisiibacteriota bacterium


ncbi_submitter: South China Agricultural University


ncbi_country: South Africa: Schoenmakerskop

ncbi_organism_name: Saprospiraceae bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Columbia University Medical Center


ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: China agricultural university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Blastococcus jejuensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_strain_identifiers: USDA 110

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Christensenella sp.


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Pseudomonas sp. PsB

ncbi_strain_identifiers: PsB

ncbi_submitter: Texas A&M University


ncbi_country: Pakistan

ncbi_isolation_source: urine

ncbi_submitter: FDA


ncbi_isolation_source: hospital sewage

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Sphingobacterium multivorum


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_organism_name: Enterococcus ureilyticus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_organism_name: Megamonas funiformis

ncbi_submitter: BGI-Shenzhen


ncbi_assembly_name: freshwater MAG --- LJ-3-4m_bin-0966

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidimicrobium sp.

ncbi_submitter: BILS


ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: University of California, Los Angeles


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Planctomicrobium piriforme

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Leifsonia sp. P73

ncbi_submitter: The University of Sydney


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Dubosiella sp.


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: EMG


ncbi_country: Italy: Milano

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces mediolani

ncbi_strain_identifiers: NRRL WC-3934

ncbi_submitter: University of Illinois


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1258

ncbi_submitter: Broad Institute


ncbi_organism_name: Prevotella sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Pacific Ocean: Chile-Peru Current Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: environment

ncbi_submitter: FDA/CFSAN


ncbi_country: India

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: USA

ncbi_organism_name: Woodsholea maritima DSM 17123

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bilophila sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Portugal: North and Centre

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Faculty of Pharmacy, University of Porto


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Azospirillum sp.

ncbi_submitter: University of Montreal


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: uncultured Peptostreptococcus sp.


ncbi_country: Atlantic Ocean

ncbi_isolation_source: skin

ncbi_organism_name: Planococcus sp. APC 3900

ncbi_submitter: University College Cork

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Planococcus;x__unclassified Planococcus (in: firmicutes);s__Planococcus sp. APC 3900


ncbi_assembly_name: IMG-taxon 2634166321 annotated assembly

ncbi_organism_name: Blastococcus tunisiensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Bordetella bronchiseptica D993

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: ear swab

ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: University of Edinburgh


ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: University of Texas at Tyler Health Science Center


ncbi_isolation_source: stool

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Litchfield


ncbi_country: China: Shaanxi; Xi an

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: root

ncbi_organism_name: Celerinatantimonas diazotrophica

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_isolation_source: Caecum

ncbi_organism_name: Turicimonas muris


ncbi_submitter: WRAIR-Africa


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Plant

ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: University of California


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: International Space Station

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Eubacterium ventriosum

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Russia: Nizhniy Novgorod

ncbi_isolation_source: wound discharge

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: I.N.Blokhina Research Institute of Epidemiology and Microbiology


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acetobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Prevotella sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Japan Agency for Marine-Earth Science and technology (JAMSTEC)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universtity Hospital Cologne


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Allomuricauda sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Sweden: coastal region near Tjarno

ncbi_isolation_source: Seawater (1m depth)

ncbi_organism_name: Planktomarina temperata

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Flavipsychrobacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Calothrix sp. PCC 7716

ncbi_submitter: Applied Chemistry and Life Science, Toyohashi University of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Calotrichaceae;g__Calothrix;x__unclassified Calothrix;s__Calothrix sp. PCC 7716


ncbi_country: Brazil: Maceio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_submitter: EMG


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: C_S_N bioreactor biomass

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Radboud University Nijmegen


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_organism_name: Actinobacteria bacterium UBA5975

ncbi_submitter: University of Queensland


ncbi_submitter: Rosselkhoznadzor The Russian State Center for Animal Feed and Drug Standardization and Quality

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Choleraesuis


ncbi_organism_name: Bacilli bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: uncultured Desulfobacteraceae bacterium


ncbi_submitter: National Institute for Public Health and the Environment


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: University Bourgogne Franche-Comte, INRAE, Institut Agro Dijon


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Kansas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_organism_name: Bacillus sp. YIM B13597

ncbi_submitter: Yunnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. YIM B13597


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Merdibacter sp. Marseille-QA0792

ncbi_submitter: IHU - Mediterranee Infection


ncbi_strain_identifiers: DH-ZRr;UAM

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-3660

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Escherichia coli

ncbi_submitter: CHU de Bicetre


ncbi_country: China: XinJiang

ncbi_isolation_source: brain

ncbi_organism_name: Listeria sp. LM90SB2

ncbi_submitter: Shihezi University


ncbi_isolation_source: animal manure

ncbi_organism_name: bacterium 0.1xD8-71

ncbi_submitter: Chinese Academy of Science


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Linyi

ncbi_isolation_source: root endophyte

ncbi_organism_name: Bacillus sp. GbtcB11

ncbi_submitter: Central South University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. GbtcB11


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Winkia neuii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Geminicoccaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Collieribacteriota;s__Candidatus Collierbacteria bacterium GW2011_GWE2_42_48


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: SAR86 cluster bacterium

ncbi_submitter: Universidad Andres Bello

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium


ncbi_strain_identifiers: mcr mut 5

ncbi_submitter: Paris Saclay


ncbi_country: Viet Nam

ncbi_isolation_source: missed

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague institute "Microbe"


ncbi_assembly_name: Rumen uncultured genome RUG10707

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Virgibacillus siamensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: colonic content of eviscerated cattle

ncbi_submitter: US Meat Animal Research Center


ncbi_country: Lebanon

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: VRE 47

ncbi_submitter: Lebanese American University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Paracoccaceae bacterium


ncbi_country: India: Punjab; Faridkot; Wara Daraka

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Streptomyces rimosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Bern


ncbi_submitter: Technische Universiteit Delft


ncbi_country: Austria: Neusiedler See

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_organism_name: Brucella sp.


ncbi_country: Denmark: Lyngby

ncbi_isolate: NADPH

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: DTU Biosustain


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Pseudoxanthomonas sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: USA: Detroit

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UC San Diego


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Hydrogenophilaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Canada: Buffalo Point; MB

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Public Health Agency of Canada


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Desulfurellaceae bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: USA: Colorado

ncbi_isolation_source: wildlife fecal samples in bovine feedlots collected in Colorado; USA

ncbi_submitter: McGill University


ncbi_isolation_source: sourdough

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: University of Alberta


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD6132

ncbi_submitter: Chinese University of Hong Kong


ncbi_isolation_source: Swine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: USA

ncbi_submitter: university of pennyslvania

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7095

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Acidimicrobiales bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Agroscope


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Germany

ncbi_isolation_source: raw fermented sausage

ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: China: Zhejiang

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH12154

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Thermoleptolyngbya oregonensis NK1-22

ncbi_submitter: Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences


ncbi_country: USA: Indian River Lagoon; Florida

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Central Florida


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: IL

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_country: Japan:Sagami bay

ncbi_isolation_source: liquefied natural gas

ncbi_submitter: Department of Subsurface Geobiological Analysis and Research, Japan Agency for Marine-Earth Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__Bathymodiolus japonicus methanotrophic gill symbiont


ncbi_country: Canada: Toronto

ncbi_isolation_source: Processing enviroment

ncbi_submitter: Public Health Agency of Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes;x__Listeria monocytogenes serotype 1/2a;x__Listeria monocytogenes serotype 1/2a str. 08-7363


ncbi_country: Taiwan

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Shanghai JiaoTong University School of Medicine


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Rhizobium sp. Root1240

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Parabacteroides distasonis ATCC 8503

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides distasonis;x__Parabacteroides distasonis ATCC 8503


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Marivita cryptomonadis

ncbi_submitter: Shantou University


ncbi_country: Japan:Hyougo; Himeji-city; National Hospital Organization Himeji Medical Center

ncbi_isolation_source: pus

ncbi_organism_name: Parvimonas micra

ncbi_submitter: Sunstar Inc.


ncbi_isolation_source: human gut

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_assembly_name: IMG-taxon 2630968293 annotated assembly

ncbi_organism_name: Winogradskyella sediminis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Panama

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis PanR0306

ncbi_submitter: Texas A&M University


ncbi_country: Canada: Quebec

ncbi_isolation_source: Environmental (Chicken Fluff)-Outbreak

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20111175


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond H1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: University of Montreal


ncbi_assembly_name: IMG-taxon 2617270766 annotated assembly

ncbi_organism_name: Aquisalimonas asiatica


ncbi_organism_name: Shewanella amazonensis SB2B

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: University of Chicago


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Viet Nam

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia thailandensis

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Proteobacteria bacterium UBA5682

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA5682


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Paraprevotella sp.


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Paenibacillus terrae HPL-003

ncbi_submitter: BGI


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-09707

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Micrococcales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Poland

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Pediatric Research and Clinical Center for Infectious Diseases


ncbi_country: USA

ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Candidatus Angelobacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;g__Candidatus Angelobacter;x__unclassified Candidatus Angelobacter;s__Candidatus Angelobacter sp.


ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Roseovarius indicus

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: Japan

ncbi_organism_name: Roseburia sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: Solibacillus isronensis

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_submitter: Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University


ncbi_organism_name: Sporosarcina aquimarina

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_isolation_source: individually-maintained laboratory-adapted strain of PAO1 acquired from R. Hancock; Univ. of British Columbia

ncbi_organism_name: Pseudomonas aeruginosa PAO1

ncbi_submitter: University of Maryland, Baltimore


ncbi_country: Japan: Toyotomi

ncbi_isolation_source: Soil immersed in hot spring water

ncbi_organism_name: Acinetobacter sp. NIPH 2699

ncbi_strain_identifiers: NIPH 2699

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Sudan: Khartoum; Soba University Hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Brighton and Sussex Medical School


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Australia

ncbi_organism_name: Campylobacter lari

ncbi_submitter: Microbiological Diagnostic Unit Public Health Laboratory