ncbi_submitter: Palacky University Olomouc

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor silvarum


gtdb_representative: t

ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: Pig 44

ncbi_submitter: The Chinese University of Hong Kong


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_assembly_level: Scaffold

ncbi_organism_name: Dialister sp.


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Chengdu University of Traditional Chinese Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: University of Lausanne


ncbi_assembly_level: Complete Genome

ncbi_submitter: Fujian medical university union hospital


ncbi_organism_name: uncultured Lamprocystis sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: ICMP 5712

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_submitter: ANSES


ncbi_country: Hungary: Szeged biogas plant

ncbi_isolation_source: Anaerobic sludge from Szeged Biogas Plant

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Szeged


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Actinobacteria bacterium 21-64-8

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__unclassified Actinomycetota;s__Actinobacteria bacterium 21-64-8


ncbi_country: Canada: Vancouver

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Atopococcus sp.


ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: Monash University


ncbi_isolate: tissue of Heliopora coerulea

ncbi_organism_name: Gordonia jacobaea

ncbi_strain_identifiers: bgisy198;tissue of Heliopora coerulea

ncbi_submitter: BGI Research


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Laboratorio de Investigacion en Agentes Antibacterianos


ncbi_organism_name: uncultured Ohtaekwangia sp.


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_assembly_name: IMG-taxon 2636416173 annotated assembly

ncbi_organism_name: Bacillus sp. 166amftsu

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 166amftsu


ncbi_isolation_source: puffed wheat cereal

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 442692 2-5


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Biological soil crust from Avdat LTER; Negev Desert; Israel

ncbi_organism_name: uncultured Mycobacteriales bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_organism_name: Planococcus rifietoensis

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1533

ncbi_submitter: Broad Institute


ncbi_country: New Zealand: Auckland Combined

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: University of Bath


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Fusobacterium sp.


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Cyclobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: USA

ncbi_isolation_source: tissue; sacral ulcer

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 2021EL-01169


ncbi_organism_name: Pseudescherichia sp. AS216

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Giovannoniibacteriota;s__Candidatus Giovannonibacteria bacterium RIFCSPLOWO2_02_FULL_43_37


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alistipes sp. UBA6068


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Fusobacteriia bacterium UBA1095

ncbi_submitter: University of Queensland


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Columbia University Medical Center


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_country: China: Yunnan; Lincang

ncbi_organism_name: Candidatus Phytoplasma sacchari

ncbi_submitter: Sugarcane Research Institute, Yunnan Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrXI (Rice yellow dwarf group);s__Candidatus Phytoplasma sacchari


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: United Kingdom

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: China: Yunfu Pyrite Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: CIISA - Centre of Interdisciplinary Research in Animal Health, Faculty of Veterinary Medicine, Unive


ncbi_isolation_source: Nares

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: MIT


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Chapel Hill; North Carolina

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of North Carolina at Chapel Hill


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Bacillales bacterium UBA1709


ncbi_isolation_source: human feces metagenome


ncbi_organism_name: Escherichia coli

ncbi_submitter: Proteon Pharmaceuticals


ncbi_organism_name: Truepera sp.

ncbi_submitter: University of Fribourg


ncbi_country: Australia: Brisbane

ncbi_isolation_source: antral sinus

ncbi_organism_name: Mycolicibacterium brisbanense

ncbi_submitter: Uppsala University


ncbi_organism_name: Lactobacillus delbrueckii subsp. allosunkii


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: University of Michigan


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: uncultured Desulfobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Leptotrichia sp.


ncbi_country: Canada

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: CFE, University of Coimbra


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W64953

ncbi_submitter: Broad Institute


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner MongoliaAgricultural University


ncbi_assembly_level: Chromosome

ncbi_country: India: West Bengal

ncbi_isolation_source: root

ncbi_organism_name: Bradyrhizobium sp. WBOS04

ncbi_submitter: University of Calcutta


ncbi_country: China

ncbi_isolation_source: Respiratory Medicine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Guangzhou Medical University


ncbi_country: Germany

ncbi_isolation_source: raw milk

ncbi_organism_name: Pseudomonas lundensis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Australia: Newcastle

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Vershire; Ely Copper Mine

ncbi_isolation_source: sediment

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: SC

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Agrobacterium fabrum

ncbi_submitter: Oregon State University


ncbi_country: Argentina

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Streptomyces sp. Z38

ncbi_submitter: PROIMI


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_country: Indian Ocean

ncbi_isolation_source: sea mud

ncbi_organism_name: Bacillus siamensis

ncbi_strain_identifiers: SCSIO 05746

ncbi_submitter: Institute of Applied Ecology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus siamensis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine, Zhejiang University


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B172;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: enriched sample of cicada slough

ncbi_organism_name: Leucobacter aridicollis

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: California; Calistoga

ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_country: Spain:Blanes Bay Microbial Observatory; Mediterranean Sea

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; surface seawater

ncbi_organism_name: Pelagibacterales bacterium SAG-MED10

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Pelagibacterales bacterium SAG-MED10


ncbi_country: Malaysia: State of Selangor

ncbi_isolation_source: fermented vegetable waste

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Kasetsart University


ncbi_isolation_source: lake water

ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine


ncbi_country: Canada: Ontario;Canagagigue Creek

ncbi_isolation_source: stream water

ncbi_submitter: Food and Water Safety Consortium


ncbi_isolation_source: kefir grains

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus kefiranofaciens;sb__Lactobacillus kefiranofaciens subsp. kefiranofaciens;x__Lactobacillus kefiranofaciens subsp. kefiranofaciens DSM 5016 = JCM 6985


ncbi_submitter: Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: faeces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Quadram Bioscience Institute


ncbi_isolation_source: freshwater

ncbi_organism_name: Acinetobacter junii

ncbi_submitter: University of Queensland


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Lund University


ncbi_country: USA: Georgia

ncbi_isolation_source: retail store

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Georgia


ncbi_assembly_name: Rumen uncultured genome RUG14154

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Bacillales bacterium UBA4278


ncbi_organism_name: Pseudoalteromonas sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_isolation_source: Caecum

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Beihai; Guangxi

ncbi_isolation_source: mangrove soil

ncbi_organism_name: Rhodococcus pyridinivorans

ncbi_submitter: Guangxi University for Nationalities


ncbi_country: Canada: Guelph

ncbi_submitter: University of Guelph


ncbi_organism_name: Coxiellaceae bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: Phocaeicola sp. ICN-14070

ncbi_submitter: Seoul National University


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_country: Spain: Asturias

ncbi_organism_name: Yaniella sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: Slovenia: Piran; Adriatic Sea; Gulf of Piran

ncbi_organism_name: Kistimonas sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: WHRI 8825

ncbi_submitter: University of Exeter


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_isolation_source: anal swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: USA: Washington; University Place

ncbi_isolation_source: One-stage PNA wastewater reactor

ncbi_organism_name: Burkholderiales bacterium


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_country: China: Shenzhen

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Shenzhen People's Hospital


ncbi_organism_name: Pontixanthobacter sp.

ncbi_submitter: McGill University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 1.2 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Omnitrophica bacterium RIFOXYB12_FULL_50_7


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_assembly_name: Rumen uncultured genome RUG127

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Homoserinimonas sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Ethiopia

ncbi_organism_name: Xanthomonas arboricola pv. guizotiae

ncbi_strain_identifiers: CFBP 7408

ncbi_submitter: INRA


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Post Graduate Institute of Medical Education and Research, Chandigarh


ncbi_country: China

ncbi_organism_name: Streptococcus parasuis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Solibacillus sp. FSL R5-0449

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Solibacillus;x__unclassified Solibacillus;s__Solibacillus sp. FSL R5-0449


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: Tongji University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Poultry Farm

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: China: Fujian

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Elizabethkingia miricola

ncbi_submitter: CDC


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Italy: Verona

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium myosotis

ncbi_submitter: University of Bologna


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Rhodobacteraceae bacterium UBA1957

ncbi_submitter: University of Queensland


ncbi_organism_name: Maritimibacter sp.

ncbi_submitter: Georgia Tech


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Fervidobacterium sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculty of medecine and pharmacy RABAT


ncbi_organism_name: Escherichia coli


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_organism_name: Polaromonas sp.


ncbi_isolate: AOP34_AQ2_surf _bin _16

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_strain_identifiers: AOP34_AQ2_surf _bin _16

ncbi_submitter: Genoscope


ncbi_organism_name: Bifidobacterium breve


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: UK anaerobe Reference Unit; Cardiff

ncbi_isolation_source: Cerebellum abscess

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Cardiff University


ncbi_organism_name: Mycolicibacterium chubuense

ncbi_refseq_category: reference genome

ncbi_submitter: SC


ncbi_organism_name: Bradyrhizobium liaoningense CCBAU 83689

ncbi_strain_identifiers: CCBAU 83689

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Colorado State University


ncbi_country: Thailand: Chiang Mai

ncbi_isolation_source: food

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: Norway: Bergen

ncbi_isolation_source: water

ncbi_organism_name: Neptuniibacter marinus

ncbi_strain_identifiers: ATR 1.1

ncbi_submitter: Universidad de Santiago de Compostela


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Beijing

ncbi_isolation_source: MHB broth

ncbi_submitter: China agriculture university


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_country: France

ncbi_isolation_source: BAL


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides fragilis str. 1007-1-F #8

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides fragilis;x__Bacteroides fragilis str. 1007-1-F #8


ncbi_country: South Africa: Stanger

ncbi_isolation_source: nares

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolate: metabat2_coassembly_bwa.234 MAG

ncbi_organism_name: uncultured Sutterella sp.

ncbi_strain_identifiers: metabat2_coassembly_bwa.234 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: Netherlands: Baarn

ncbi_isolation_source: potato rhizosphere

ncbi_organism_name: Pseudomonas capeferrum

ncbi_submitter: Institute for Molecular Genetics and Genetic Engineering


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Hunan

ncbi_isolation_source: probiotic product

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: south china agriculture university


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_country: USA: NM

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China: Shandong

ncbi_isolation_source: Brain tissue of dead ducks

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: liaocheng university


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Yellow Sea Fisheries Research Institute


ncbi_country: Slovenia

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National laboratory for health, environment and food


ncbi_isolate: MEAT

ncbi_organism_name: Campylobacter jejuni

ncbi_strain_identifiers: MEAT;Campylobacter jejuni

ncbi_submitter: LSHTM


ncbi_country: China: Hohhot

ncbi_isolation_source: Sour horse milk

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: university


ncbi_isolation_source: milk

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_organism_name: Streptomyces bacillaris

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: Australia

ncbi_submitter: The ithree institute


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Thermaurantimonas sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Oleiphilaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Liaocheng University


ncbi_organism_name: Staphylococcus sp. Mo2-7

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Yoonia sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_assembly_name: delhigA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: South China Sea Institute of Oceanology


ncbi_organism_name: Bacillus cereus group sp. BceL050

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL050


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_country: Hungary: Szeged wastewater treatment plant

ncbi_isolation_source: Anaerobic sludge from Szeged Municipal wastewater plant s biogas plant Biogas Plant

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Szeged

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: Sutterella wadsworthensis


ncbi_organism_name: Pseudomonadota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Oryzobacter faecalis

ncbi_submitter: Jiangxi Normal University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Japan

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Toho University


ncbi_country: Denmark: Damhusaen

ncbi_isolation_source: activated sludge from Damh_18-Q3-R51-60

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_country: China: zhejiang

ncbi_isolation_source: sputum

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_submitter: Georgia Institute of Technology


gtdb_type_species_of_genus: t

ncbi_country: Czechoslovakia

ncbi_isolation_source: water pipes

ncbi_organism_name: Pragia fontium

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: China:Gulongzhong Scenic Spot; Xiangyang City; Hubei Province

ncbi_isolation_source: soil

ncbi_organism_name: Streptosporangiaceae bacterium NEAU-GS5

ncbi_submitter: Northeast Agricultural University


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: Daqu

ncbi_organism_name: Thermoactinomyces sp. CICC 10735

ncbi_submitter: China National Research Institute of Food and Fermentation Industries


ncbi_organism_name: Pseudomonas aeruginosa PA103

ncbi_submitter: The University of Iowa


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Pantoea sp. SJZ147

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: East China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Streptococcus equinus

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: China: Shanghai

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: Germany: Bochum

ncbi_isolation_source: ear

ncbi_organism_name: Auritidibacter ignavus

ncbi_submitter: Institut fuer Medizinische Laboratoriumsdiagnostik Bochum GmbH


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Bern


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom: Somerset

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Thermomicrobiales bacterium


ncbi_country: Belgium: Flanders

ncbi_isolation_source: freshwater pond

ncbi_organism_name: Carnobacterium sp. PL17GRE32

ncbi_submitter: KU Leuven


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Canada: Quebec

ncbi_isolation_source: patient with severe CDAD

ncbi_organism_name: Clostridioides difficile QCD-66c26

ncbi_submitter: McGill University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Guangzhou City; Guangdong Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Bacteroidales bacterium UBA7293

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA7293


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_strain_identifiers: LT2 KO_STM2612

ncbi_submitter: University of California at Davis


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Turkey: Kars

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Bundeswehr, Institute of Microbiology


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Germany

ncbi_isolation_source: rectal swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Limosilactobacillus reuteri subsp. suis

ncbi_submitter: Veterinary Research Institute


ncbi_country: Hong Kong: Wong Wan Chau

ncbi_isolation_source: Macroalgal ambient sediment

ncbi_organism_name: Ruegeria lacuscaerulensis

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Belgium

ncbi_isolation_source: cecal content

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: Warsaw University of Life Sciences (SGGW)


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_country: China: Lanzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University College London (UCL)


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Pseudomonas monteilii

ncbi_submitter: University of Toledo


ncbi_country: USA:New York

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers of Disease Control


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: RMIT UNIVERSITY


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Phototrophicaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Zymomonas mobilis

ncbi_submitter: Northeastern University of China


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: NGH Pa47

ncbi_submitter: King Abdullah University Science and Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IRCCS Fondazione Policlinico San Matteo


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Senegalimassilia sp.

ncbi_submitter: DOE JGI


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_02_FULL_43_11


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Kunming

ncbi_isolation_source: gut

ncbi_organism_name: Commensalibacter sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Segatella copri

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Malaysia

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: India: Garoghuli; Guwahati; Assam

ncbi_isolation_source: feces

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Sichuan; Chengdu

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: China: Hubei; Yunmeng

ncbi_isolation_source: duck

ncbi_organism_name: Riemerella anatipestifer RA-YM

ncbi_strain_identifiers: RA-YM

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Los Angeles

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: University of California, Los Angeles


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Wyoming


ncbi_organism_name: Segatella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Damariscotta River in front of the Bigelow Laboratory for Ocean Sciences

ncbi_isolation_source: four week timepoint of microcosm treated with crude oil after inoculation with natural surface seawater; biological replicate 2

ncbi_organism_name: Thalassolituus sp.

ncbi_submitter: University of Southern California


ncbi_country: Thailand: Lamphun

ncbi_isolation_source: Rectal swab

ncbi_submitter: JCVI


ncbi_country: India: Aurangabad

ncbi_submitter: Christian Medical College


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Agroscope


ncbi_organism_name: Williamsia herbipolensis

ncbi_submitter: Technical University of Denmark


ncbi_country: Brazil: Belem

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: Benin

ncbi_isolation_source: Blood cultures

ncbi_organism_name: Staphylococcus epidermidis


ncbi_country: Canada: Ontario

ncbi_isolation_source: river water

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: University of Minnesota


ncbi_country: China: Jiangsu

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Draconibacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Giesbergeria sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces fungicidicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Birmingham


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: EPFL


ncbi_assembly_name: IMG-taxon 2606217754 annotated assembly

ncbi_organism_name: Olsenella sp. kh2p3

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: spleen

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T82627

ncbi_submitter: Broad Institute


ncbi_isolation_source: seawater

ncbi_organism_name: Rhodococcus sp. EPR-279

ncbi_submitter: Zhejiang Wanli University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. EPR-279


ncbi_organism_name: Treponema sp.


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Ruminococcus sp.


ncbi_submitter: FDA-CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. houtenae;x__Salmonella enterica subsp. houtenae serovar 43:z4


ncbi_country: Thailand

ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S111

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S111


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Ferrithrix thermotolerans DSM 19514

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Beijing University of Chemical Technology


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: cattle fecal sample

ncbi_organism_name: Clostridium estertheticum

ncbi_submitter: University of Zurich


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: sewage sludge

ncbi_submitter: INGEBI-CONICET

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Aeromonas veronii AER39


ncbi_organism_name: Clostridium tertium

ncbi_submitter: China Conservation and Research Center for the Giant Panda


ncbi_country: Cambodia

ncbi_organism_name: Mycolicibacter heraklionensis

ncbi_submitter: JCVI


ncbi_country: China: Zhejiang

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Xiaoshan No.3 People's Hospital


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Plant

ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: University of California


ncbi_submitter: Mahidol University


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Portugal

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: USA: Plum Island; MA

ncbi_isolation_source: Filtered seawater (5uM filter)

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_strain_identifiers: SCGC AAA252-L23

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Aerophobota;c__;o__;f__;g__Candidatus Aerophobus;s__Candidatus Aerophobus profundus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aerophobota;g__Candidatus Aerophobus;s__Candidatus Aerophobus profundus;x__Candidatus Aerophobus profundus SCGC AAA252-L23


ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Chulalongkorn University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;s__Candidatus Kaiserbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_59_10


ncbi_country: Ghana

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Aarhus University Hospital, Denmark


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R741;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: ICDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: South Korea: Hapcheon Changnyeong barrage

ncbi_isolation_source: Cyanobacterial bloom

ncbi_organism_name: Niveibacterium microcysteis

ncbi_submitter: korea university


ncbi_organism_name: Holophaga sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Raoultella terrigena


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: Belgium

ncbi_isolation_source: Feces

ncbi_organism_name: Aliarcobacter thereius

ncbi_submitter: Ghent University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Streptomyces albidochromogenes

ncbi_submitter: University of Newcastle


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Aquimonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Germany: Hainich National Park

ncbi_isolation_source: soil

ncbi_organism_name: Microbacterium sp. B35-04

ncbi_submitter: Helmholtz Centre for Environmental Research UFZ


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Neorhizobium petrolearium

ncbi_submitter: Tarim University


ncbi_country: Mexico: Mexico city

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of California at Davis


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: Freshwater

ncbi_organism_name: Flavobacterium commune

ncbi_submitter: Chungnam National University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Stanford University


ncbi_country: China: Anhui; Wuhu

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: China: Yantai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yantai Yuhuangding Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Thailand

ncbi_isolation_source: animal

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Srinakharinwirot university


ncbi_organism_name: Spinactinospora alkalitolerans

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: New Haven; Connecticut

ncbi_isolation_source: freshwater

ncbi_organism_name: Leptospira stimsonii

ncbi_strain_identifiers: Yale

ncbi_submitter: Yale School of Public Health


ncbi_country: Kenya

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Stenotrophomonas muris

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_country: China: Danxia mountain; Shaoguan City; GuangDong Province

ncbi_organism_name: Fibrisoma montanum

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Australia: WA

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_country: France

ncbi_isolation_source: forestomach

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Alberta


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University Hospital of Antwerp


ncbi_country: China: Beijing

ncbi_isolation_source: urine

ncbi_submitter: China Agricultural University


ncbi_country: Nigeria

ncbi_isolation_source: chicken

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Texas A&M University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: Wisconsin

ncbi_organism_name: Streptomyces sp. CLI2509

ncbi_submitter: Harvard Medical School


ncbi_country: Singapore

ncbi_isolation_source: reservoir water

ncbi_organism_name: Ochrobactrum sp. CGA5

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leeds


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Leuconostoc lactis

ncbi_submitter: Qingdao Binhai University


ncbi_organism_name: Janthinobacterium sp. PSRC2-1

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: Pseudolactococcus raffinolactis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State University of Londrina


ncbi_organism_name: uncultured Pseudoxanthomonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Mycobacterium sp.


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Guangxi Medical University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: uncultured Chitinophagales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;x__environmental samples;s__uncultured Chitinophagales bacterium


ncbi_organism_name: uncultured Sediminibacterium sp.


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Salmonella sp. SJTUF15608

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_submitter: Washington University in Saint Louis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Tannerellaceae bacterium

ncbi_submitter: Sichuan University


ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_organism_name: Acidimicrobiia bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Department of Clinical Laboratory, the Affiliated Suzhou Hospital of Nanjing Medical University


ncbi_submitter: Yale University


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_submitter: Biomin Research Center


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Back swab

ncbi_organism_name: Dietzia cinnamea

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: Russia: Lake Baikal

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_submitter: Center for Microbial Communities


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_assembly_name: freshwater MAG --- MJ120702A_bin-598

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: metagenome

ncbi_organism_name: Flavonifractor sp. An10

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: United Kingdom: Norwich

ncbi_organism_name: Enterobacter hormaechei

ncbi_strain_identifiers: P095L P

ncbi_submitter: Imperial College London


ncbi_organism_name: Carnobacterium sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Enterococcus sp. C13(2024)

ncbi_submitter: Northwest A & F University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Sichuan university


ncbi_assembly_name: BD1-7 clade bacteriaum strain BC5_2

ncbi_isolation_source: Marine sponge tissue

ncbi_organism_name: BD1-7 clade bacterium

ncbi_submitter: UNIVERSITY OF BRITISH COLUMBIA


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Jiangsu

ncbi_isolation_source: secretion

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Federal University of Sao Paulo


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 179100

ncbi_submitter: IGS


ncbi_country: Italy: Trento

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Rhizobiales bacterium 2SD

ncbi_submitter: University of Trento


ncbi_country: Serbia

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: United Kingdom: Isle of May

ncbi_isolation_source: Halichoerus grypus

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Edinburgh


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_organism_name: Lactobacillus johnsonii


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bdellovibrio sp. ZAP7

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Copenhagen


ncbi_country: China: Chengdu

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-126

ncbi_submitter: Broad Institute


ncbi_isolate: metabat2_XCR1_HET_6741_bwa.133 MAG

ncbi_organism_name: Candidatus Enterousia excrementavium

ncbi_strain_identifiers: metabat2_XCR1_HET_6741_bwa.133 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;s__Candidatus Enterousia excrementavium


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Leptospirillum ferrooxidans

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: China-Japan Friendship Hospital


ncbi_country: South Africa: North West; Free State; Northern Cape and Gauteng provinces

ncbi_isolation_source: leaves

ncbi_organism_name: Xanthomonas vasicola pv. zeae

ncbi_submitter: North-West University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Microbial Institute for Fermentation Industry

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Kennedy Institute of Rheumatology, University of Oxford


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: Faeces


ncbi_assembly_name: Acidobacteria bacterium Ga0077522

ncbi_country: USA: Ann Arbor

ncbi_isolation_source: dual media filters at the Ann Arbor; Michigan drinking water treatment plant

ncbi_organism_name: Acidobacteria bacterium Ga0077522

ncbi_submitter: University of Glasgow

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__unclassified Acidobacteriota;s__Acidobacteria bacterium Ga0077522


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Segatella copri


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: North South University


ncbi_country: Finland

ncbi_isolation_source: meat

ncbi_organism_name: Yersinia intermedia

ncbi_submitter: SC


ncbi_organism_name: Muribaculum sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jiangxi Academy of Agricultural Sciences


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Thiotrichales bacterium 17-46-47


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: India: Vellore

ncbi_isolation_source: Cerobrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Christian Medical College


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas avellanae pv. morsprunorum

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas avellanae;x__Pseudomonas avellanae pv. morsprunorum


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Ruminococcaceae bacterium UBA5244

ncbi_submitter: University of Queensland


ncbi_country: Czech Republic

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: JCVI


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: bacterium 210917-DFI.7.65

ncbi_submitter: University of Chicago


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Ralstonia mannitolilytica

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: United Kingdom: Reading

ncbi_organism_name: Pseudomonas tolaasii

ncbi_submitter: University of Reading


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Henan University of Science and Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Medical University, Taichung, Taiwan


ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Beijing

ncbi_isolation_source: feces

ncbi_organism_name: Lawsonibacter hominis

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_isolation_source: human milk

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: URMITE


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Varanasi

ncbi_isolation_source: agricultural soil [ENVO:00002259]

ncbi_organism_name: Agrobacterium sp. InxBP2

ncbi_submitter: Banaras Hindu University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Tidjanibacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: patient YYC

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University of Toronto


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG12648

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Synergistes sp.

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Acholeplasmatales bacterium


ncbi_isolation_source: microbial mat

ncbi_organism_name: Microcoleaceae cyanobacterium UBA9251

ncbi_submitter: University of Queensland


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: SurvCARE


ncbi_organism_name: Brachybacterium paraconglomeratum

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: University of Pittsburgh


ncbi_submitter: Ningxia Medical University General Hospital


ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: hamburger

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: ECBC


ncbi_organism_name: Segatella copri

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Oxnard; CA

ncbi_isolation_source: Excreta

ncbi_organism_name: Campylobacter volucris

ncbi_submitter: US EPA


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Cohaesibacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG13152

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bucharest


ncbi_country: Mexico

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Heilongjiang Province

ncbi_isolation_source: Traditional Chinese phaseolus vulgaris

ncbi_organism_name: Rhizobium croatiense

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: uncultured Blautia sp.


ncbi_country: South Korea: Yongin-si

ncbi_isolation_source: feces

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: EPS DA-BACS

ncbi_submitter: Dong-A Pharmaceutical Co., Ltd.


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Paratyphi A

ncbi_submitter: National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Rahnella perminowiae

ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_country: Spain: Santander

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: ITACYL


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: University of Amsterdam


ncbi_submitter: UCSF


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 4-203-08_S4_C3

ncbi_submitter: IGS


ncbi_organism_name: Escherichia coli 95.0943

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Dog bite

ncbi_organism_name: Pasteurella multocida


ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Veillonellaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: France: Paris

ncbi_isolation_source: Oropharinx

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_country: China: Shanghai

ncbi_isolation_source: Food

ncbi_submitter: University of Maryland, College Park

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. SHSN001


ncbi_organism_name: Mesorhizobium sp. M0619

ncbi_submitter: Washington State University


ncbi_isolation_source: gut of vertebrate mammal

ncbi_organism_name: Bacteroidales bacterium UBA3389

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA3389


ncbi_country: China: Luzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Affiliated Hospital of Southwest Medical University


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Enterococcus faecalis EnGen0108

ncbi_submitter: Broad Institute


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. SA-5


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Loyalsock

ncbi_isolation_source: Freshwater creek

ncbi_organism_name: Pedobacter sp. MR2016-19

ncbi_submitter: Lycoming College


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: mucus

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: USDA-ARS-USMARC


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: Harvard University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chinese People's Liberation Army General Hospital


ncbi_organism_name: Methylobacterium indicum

ncbi_submitter: Tokyo University of Agriculture and Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Segatella copri


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Finland

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: University of Helsinki


ncbi_country: Germany: Animal Facility; Justus-Liebig-University; Giessen

ncbi_isolation_source: Surface of a polyethylene microplastic particle present in tank 6 of a marine aquarium containing stony-coral fragments and water maintained at 26 degree C

ncbi_organism_name: Roseivivax sp. THAF40

ncbi_submitter: Uni Bielefeld


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacial surface ice

ncbi_organism_name: Pseudopedobacter sp.

ncbi_submitter: Aarhus University


ncbi_organism_name: Lachnospiraceae bacterium 46-61

ncbi_submitter: Nanjing University


ncbi_country: Australia: Victoria

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Queensland


ncbi_organism_name: Bacteroides xylanisolvens SD CC 2a

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides xylanisolvens;x__Bacteroides xylanisolvens SD CC 2a


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_country: USA: New Jersey

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_strain_identifiers: EPEC 1554

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: China: Shandong

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: China Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG14150

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Hanzhong Central Hospital


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Spain: Basque Country

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Basurto University Hospital


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_assembly_name: freshwater MAG --- AM_bin-0345

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Geobacteraceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Aurantimicrobium minutum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Spain: Alicante

ncbi_isolation_source: 0.22 micron fraction from Freshwater Reservoir Amadorio

ncbi_organism_name: Burkholderiales bacterium UBA954

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom: Scotland

ncbi_organism_name: Segatella bryantii

ncbi_submitter: University of Ljubljana


ncbi_organism_name: uncultured Ardenticatenales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Tagaea sp.

ncbi_submitter: Nanjing University


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bacillus bombysepticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Vibrio lentus

ncbi_strain_identifiers: CECT 5110

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Bicetre hospital


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: uncultured Acidipila sp.


ncbi_organism_name: uncultured Maribellus sp.


ncbi_organism_name: Micropepsaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: USA

ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured beta proteobacterium


ncbi_isolation_source: chicken caecal content


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces bacillaris


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Actinomycetota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Mollicutes bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_assembly_name: suis

ncbi_country: Italy: Parma

ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Chlamydia suis MD56

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;x__Chlamydia/Chlamydophila group;g__Chlamydia;s__Chlamydia suis;x__Chlamydia suis MD56


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Aeromonas sp.


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Chifeng

ncbi_organism_name: Vibrio metschnikovii

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_organism_name: Corynebacterium argentoratense


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_organism_name: Staphylococcus capitis subsp. urealyticus

ncbi_submitter: Imperial College London


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: McMaster University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces drozdowiczii

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Klebsiella sp. 86357

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Microcoleus sp. F6_B3

ncbi_submitter: Palacky University Olomouc


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 301

ncbi_organism_name: Litorivicinus sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: NC

ncbi_isolation_source: Irrigation water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Oregon State University


ncbi_country: Germany

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH


ncbi_organism_name: Xanthomonas oryzae pv. oryzicola

ncbi_submitter: Cornell University


ncbi_country: Japan

ncbi_organism_name: Paraoerskovia marina DSM 21750

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: terrestrial

ncbi_organism_name: Rhodospirillum rubrum

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: Mariana Back-Arc Basin vent fields

ncbi_isolate: MAG 8

ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_strain_identifiers: MAG 8

ncbi_submitter: WHOI


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Shanxi Agricultural University


ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_submitter: CLUE-TERRA


ncbi_country: Atlantic Ocean: western flank of Mid-Atlantic Ridge (North Pond)

ncbi_isolation_source: marine sediment push core 14

ncbi_organism_name: Idiomarina abyssalis

ncbi_submitter: Dauphin Island Sea Lab


ncbi_isolation_source: Styrian pumpkin anthrosphere

ncbi_organism_name: Serratia plymuthica S13

ncbi_submitter: Graz University of Technology


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Burkholderia sp. 9120


ncbi_organism_name: Aliarcobacter skirrowii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jiangxi; Yinshan

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Lombardia e del Emilia Romagna (IZSLER)


ncbi_country: USA: Boston; MA

ncbi_submitter: Harvard University


ncbi_country: USA: PA

ncbi_submitter: FDA/CFSAN


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: Johns Hopkins University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-4754

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Pseudomonas sp. JUb96

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Burn

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Monash University


ncbi_organism_name: Proteus penneri

ncbi_submitter: Washington University


ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: Jiangxi Agricultural University