ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Zambia

ncbi_genome_representation: full

ncbi_isolation_source: intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_country: China

ncbi_isolation_source: hyperthermophilic anaerobic system

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: China: Zhejiang

ncbi_isolation_source: animal

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_country: Canada: Medicine Hat; Alberta

ncbi_genome_category: derived from single cell

ncbi_isolation_source: 2 cells (3PWM13 and 3PWN19) amplified by MDA; produced water

ncbi_organism_name: Mesotoga sp. SC_3PWM13N19

ncbi_submitter: University of Alberta


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: Max Planck Institute for Evolutionary Biology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yanofskyibacteriota;s__Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_02_FULL_43_12


gtdb_type_species_of_genus: t

ncbi_assembly_level: Complete Genome

ncbi_country: USA: New York

ncbi_isolation_source: throat of a patient with diphtheria

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Bielefeld University

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Yunnan University


ncbi_organism_name: Treponemataceae bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Jeonbuk National University


ncbi_country: Russia: Saratov

ncbi_isolation_source: urine

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: Mahidol University


ncbi_organism_name: Candidatus Cloacimonas sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;x__unclassified Candidatus Cloacimonas;s__Candidatus Cloacimonas sp.


ncbi_isolation_source: human blood

ncbi_organism_name: Streptococcus pasteurianus ATCC 43144

ncbi_submitter: Yang-Ming Genome Sequencing Center, National Yang-Ming University


ncbi_organism_name: Bacillus sp. EU54

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. EU54


ncbi_country: France

ncbi_isolation_source: stools

ncbi_organism_name: Campylobacter coli

ncbi_submitter: CHU de Bordeaux


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_country: USA: MI

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


gtdb_representative: t

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Romboutsia sp. D33t1_170424_H2

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Candidatus Limnocylindrus sp.

ncbi_submitter: University of Duisburg Essen

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;x__unclassified Candidatus Limnocylindrus;s__Candidatus Limnocylindrus sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Seawater

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University Hospital Basel


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: cloaca

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: P9 CL A28

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: United Kingdom: Liverpool

ncbi_isolation_source: Sputum

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Xi'an Jiaotong-Liverpool University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Isolate 05;Patient 07

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: not available: to be reported later

ncbi_submitter: SC


ncbi_organism_name: Salinicola sp. 4072

ncbi_submitter: State Key Laboratory of Microbial Technology, Marine Biotechnology Research Center


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Centro de Astrobiologia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Georgia


ncbi_country: Spain: Tabernas Desert; Almeria

ncbi_isolation_source: desert soil

ncbi_organism_name: Belnapia mucosa

ncbi_refseq_category: reference genome

ncbi_submitter: Institute for Integrative Systems Biology (University of Valencia-CSIC)


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Utah


ncbi_country: Denmark: Hirtshals

ncbi_isolation_source: activated sludge from Hirt_18-Q3-R61-65

ncbi_organism_name: Uliginosibacterium sp.

ncbi_submitter: Aalborg University


ncbi_country: Canada: Opinicon; Stinkpot Bay

ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: Carleton Univeristy


ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Guadeloupe: Pointe de la Grande Vigie; Guadeloupe; France

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Proteus sp. G2674

ncbi_submitter: nankai university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G2674


ncbi_country: USA: Pamlico Sound; Rodanthe; Hatteras Island; NC

ncbi_isolation_source: steel-hulled shipwreck

ncbi_organism_name: Mariprofundus ferrooxydans

ncbi_submitter: East Carolina University


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Altererythrobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_submitter: Christian Medical College


ncbi_country: France: Pays de la Loire

ncbi_isolation_source: feces

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China: SiChuan

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_isolation_source: human

ncbi_organism_name: Caballeronia concitans

ncbi_submitter: LM-UGent


ncbi_country: China

ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Tongji Hospital, School of Medicine, Tongji University


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: BGI


ncbi_country: Hungary

ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: University of Debrecen


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Lachnoanaerobaculum sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: United Kingdom

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mutans NFSM2

ncbi_submitter: Cornell University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Bahrain: Arabian Gulf

ncbi_organism_name: Escherichia coli


ncbi_organism_name: uncultured Enterobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Ma anshan

ncbi_isolation_source: Outpatient Department

ncbi_organism_name: Shewanella algae

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: Brucella sp. UK5/01

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Klebsiella pneumoniae subsp. ozaenae

ncbi_submitter: University of Karachi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. ozaenae


ncbi_organism_name: Tissierella sp.


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: France: Grignon

ncbi_isolation_source: soil

ncbi_organism_name: Brucella intermedia

ncbi_submitter: INRA - Institut National de la Recherche Agronomique


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolate: metabat2_6730_HET_VAC_hifiasm.324 MAG

ncbi_organism_name: Candidatus Bacteroides intestinavium

ncbi_strain_identifiers: metabat2_6730_HET_VAC_hifiasm.324 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: China: Zhejiang

ncbi_isolation_source: caecum

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: feces

ncbi_submitter: University of California at Davis


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_organism_name: Leuconostoc citreum

ncbi_submitter: Jiangsu University


ncbi_organism_name: Culicoidibacterales bacterium

ncbi_submitter: Sichuan University


ncbi_country: Russia: Moscow

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Marinovum sp.

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom: London

ncbi_submitter: Imperial College London


ncbi_organism_name: Faecalimonas sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: freshwater MAG --- MJ120730B_bin-676

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Gemmiger formicilis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Corallococcus sp.

ncbi_submitter: Cleveland Clinic


ncbi_country: China: Qinghai

ncbi_isolation_source: rectum

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: NWAFU


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_submitter: Instituto de Higiene, Facultad de Medicina, Universidad de la Republica


ncbi_isolation_source: deep-sea sponge Neamphius huxleyi

ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: University of Queensland


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: India: Kolkata

ncbi_isolation_source: blood

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: Italy: Florence

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hadar


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Aerococcus urinaeequi

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Thailand: Ubon Ratchathani

ncbi_isolation_source: root

ncbi_organism_name: Amycolatopsis dendrobii

ncbi_submitter: Chulalonkorn University


ncbi_country: India: Andhra Pradesh

ncbi_organism_name: Micromonospora echinofusca

ncbi_submitter: University of Hyderabad


ncbi_organism_name: Kluyvera sp. 142053

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Methylotenera oryzisoli

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Japan:Ruins of Nisshoen; Hiroshima City; Hiroshima

ncbi_organism_name: Paenibacillus sp. L3-i20

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_country: China: Suzhou

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Syntrophobacterales bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Xanthomonas citri pv. viticola

ncbi_strain_identifiers: LMG 967

ncbi_submitter: CSIR-Institute of Microbial Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. viticola


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Canada: Albert

ncbi_isolation_source: Dinosaur fossil bone

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Princeton University


ncbi_country: Argentina: Buenos Aires

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_isolation_source: urine sample

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_submitter: AIT AUSTRIAN INSTITUTE OF TECHNOLOGY


ncbi_country: USA: New Hampshire

ncbi_isolation_source: transverse colon lumen

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Propionibacteriaceae bacterium P6A17

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Paratractidigestivibacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Bigelow Laboratory For Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_assembly_name: Rumen uncultured genome RUG12900

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Formosa sp.

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Kangwon International University


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Paraburkholderia sp. A1RO-1

ncbi_submitter: KU Leuven


ncbi_organism_name: Mycoplasma capricolum subsp. capricolum

ncbi_submitter: University of Bern

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma capricolum;sb__Mycoplasma capricolum subsp. capricolum


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: The University of Queensland


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universita Politecnica delle Marche


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Enterobacter cloacae subsp. dissolvens

ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. dissolvens


ncbi_organism_name: Blautia sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: University of Parma


ncbi_organism_name: Streptomyces sp. NPDC087897

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Institut Pasteur


ncbi_assembly_level: Chromosome

ncbi_organism_name: Sphingomonas sp. Xoc002

ncbi_submitter: Cornell University


ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Monash University


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_isolate: Lactobacillus crispatus_S10-5-C2-2

ncbi_organism_name: Lactobacillus crispatus

ncbi_strain_identifiers: Lactobacillus crispatus_S10-5-C2-2

ncbi_submitter: Indian Biological Data Centre


ncbi_country: Korea: Gwangju

ncbi_isolation_source: periapical abscess

ncbi_organism_name: Parvimonas micra

ncbi_submitter: Chosun University


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: Iran: Tehran

ncbi_isolation_source: wound

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Pasteur Institute of Iran


ncbi_country: Sweden

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Massey University


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_country: Argentina

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Xiamen University


ncbi_country: China: Chengdu

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_country: China: Guangdong

ncbi_organism_name: Mycoplasmopsis anatis

ncbi_submitter: WENS Foodstuff Group Co., Ltd. Rsearch Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: INSTITUT DE GENETIQUE ET MICROBIOLOGIE


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Patescibacteria group bacterium UBA6102

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA6102


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Bacillus sp. AF53

ncbi_submitter: Unversidad Michoacana de San Nicolas de Hidalgo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AF53


ncbi_organism_name: Stenotrophomonas sp. PvP087

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Japan

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Yonsei University


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-231

ncbi_submitter: Broad Institute


ncbi_country: USA: Chicago; IL

ncbi_isolation_source: water

ncbi_organism_name: Pseudomonas koreensis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Bdellovibrionia bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Caldisericota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: USA

ncbi_isolation_source: hyporheic zone of the Clark Fork River

ncbi_organism_name: Pseudomonas sp. CF150

ncbi_submitter: Boise State University


ncbi_country: Australia: Orpheus Island

ncbi_isolation_source: seawater

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Holdemanella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Human

ncbi_organism_name: Achromobacter insuavis

ncbi_submitter: GHENT UNIVERSITY


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Thiodiazotropha sp. LNASS1

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Candidatus Thiodiazotropha;x__unclassified Candidatus Thiodiazotropha;s__Candidatus Thiodiazotropha sp. LNASS1


ncbi_country: USA: Washington

ncbi_isolation_source: enrichment culture inoculated with soil

ncbi_organism_name: Pseudomonas sp. Sample_20

ncbi_submitter: Washington State University


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Germany

ncbi_isolation_source: single cell amplified by MDA

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Portland State University


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Paludibacter propionicigenes

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: [Eubacterium] brachy

ncbi_submitter: EMG


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: France

ncbi_isolation_source: plant root nodules

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: Medicago Hapmap Project


ncbi_country: USA: Kansas

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA/ARS


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Parabacteroides distasonis


ncbi_country: Spain: Sierra Nevada National Park; Granada

ncbi_isolation_source: Burned holm-oak rizhosphere

ncbi_organism_name: Arthrobacter sp. AFG7.2

ncbi_submitter: Estacion Experimental del Zaidin - CSIC


ncbi_organism_name: Mesorhizobium sp. M0954


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_isolation_source: lake water

ncbi_organism_name: Oscillatoriales cyanobacterium


ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: BGI


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolate: YS river water

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: YS river water

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_organism_name: Bryobacteraceae bacterium


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D2_bin-0838

ncbi_organism_name: uncultured Opitutaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Corynebacterium sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Streptomyces sp. B4I13

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Streptomyces mordarskii

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Senegal: Niokolo-Koba National Park

ncbi_organism_name: Enterobacter quasiroggenkampii

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: Proteus sp. G4465

ncbi_submitter: Nanjing Agriculture University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G4465


ncbi_country: Iran

ncbi_isolation_source: wound

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio alginolyticus

ncbi_strain_identifiers: LF TCBS 15

ncbi_submitter: Huaqiao University


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptomyces sp. NPDC057074

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Biotrof+

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Enterobacter hormaechei


ncbi_assembly_name: freshwater MAG --- LJ_bin-0623

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: EMG


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Shanghai

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai municipal center for disease control and prevention


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: USA: San Diego Bay; CA

ncbi_isolation_source: swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J

ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Bulgaria

ncbi_isolation_source: lactic starter (for yoghurt making)

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: CIRM-BIA 1048

ncbi_submitter: Brigham Young University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Faecalicoccus pleomorphus


ncbi_country: Turkey: Sirnak; Sirnak Merkez

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Marinobacterium sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Enterobacter hormaechei


ncbi_country: South Korea: Seoul

ncbi_isolation_source: nasophraynx

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chungbuk National University Hospital


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: USA: AL

ncbi_organism_name: Campylobacter coli 86119

ncbi_submitter: Cornell University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: straw bedding

ncbi_organism_name: Enterococcus saccharolyticus

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_organism_name: Actinobaculum suis

ncbi_submitter: SC


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: China: Taizhou

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Limosilactobacillus vaginalis

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: BGI


ncbi_country: China: Beijing

ncbi_strain_identifiers: Aba

ncbi_submitter: Chinese PLA General Hospital


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: EPFL


ncbi_organism_name: Actinotalea sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Kenya: Kilifi

ncbi_isolation_source: urinary tract

ncbi_submitter: Kenya Medical Research Institute - United States Army Medical Research Directorate Kenya

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: IN

ncbi_isolation_source: root

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UNC Chapel Hill


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: Drain

ncbi_submitter: GUANGZHOU CDC,China


ncbi_country: USA: FL

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D7_bin-0619

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Clostridium sp.


ncbi_country: USA: Washington DC

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: WRAIR


ncbi_organism_name: Staphylococcus nepalensis

ncbi_submitter: Hanoi University of Science, Vietnam National University


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_organism_name: Mammaliicoccus sp. J-M40

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: California

ncbi_isolation_source: Advanced Water Purification Facility

ncbi_organism_name: Pseudomonas monteilii

ncbi_submitter: Colorado School of Mines


ncbi_organism_name: Geobacter anodireducens

ncbi_submitter: University of British Columbia


ncbi_isolation_source: Proximal colon


ncbi_organism_name: Acinetobacter sp. N54.MGS-139

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Roseburia sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Arthrobacter koreensis

ncbi_strain_identifiers: Gar NS 3

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Indian Ocean

ncbi_organism_name: Idiomarina sp. 5.13

ncbi_submitter: NCAOR


ncbi_organism_name: Mesorhizobium loti

ncbi_strain_identifiers: TONO

ncbi_submitter: Division of Plant and Microbial Sciences, National Agriculture and Food Research Organization


ncbi_organism_name: Sphingobium abikonense

ncbi_submitter: Xiamen University


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Firmicutes bacterium AF36-3BH

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium AF36-3BH


ncbi_country: Algeria

ncbi_isolation_source: Dromedary milk

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Bioifnormatik, Biozentrum, Uni Wuerzburg


ncbi_country: China: South China Sea

ncbi_isolation_source: marine sediments

ncbi_organism_name: Sphingosinithalassobacter sp. CS137

ncbi_submitter: Institute of Oceanology, Chinese academy of sciences


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: USA: MD

ncbi_isolation_source: Commercial dietary supplements

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: USFDA


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: Perineum

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: University of Gothenburg - CCUG


ncbi_country: China: Shanghai

ncbi_isolation_source: pig feed

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Yangzhou University


ncbi_organism_name: Salmonella sp. 2020_890

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Flavobacterium sp. C4GT6


ncbi_organism_name: Candidatus Marinacidobacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Vicinamibacteria;o__Candidatus Marinacidobacterales;f__Candidatus Marinacidobacteraceae;g__Candidatus Marinacidobacterium;x__unclassified Candidatus Marinacidobacterium;s__Candidatus Marinacidobacterium sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: Macrococcoides caseolyticum

ncbi_submitter: University of Queensland


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_country: Bangladesh: Mirzapur

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland School of Medicine


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Acidocella sp.


ncbi_organism_name: Candidatus Onstottus frigus

ncbi_submitter: University of Tennessee

ncbi_taxonomy: d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__;f__;g__Candidatus Onstottus;s__Candidatus Onstottus frigus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Blastocatellia;x__Blastocatellia incertae sedis;g__Candidatus Onstottus;s__Candidatus Onstottus frigus


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Makerere University


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R920;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Japan

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: Yonsei University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Kosakonia cowanii

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Coprococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Gallibacterium anatis

ncbi_strain_identifiers: SCPM-O-B-15337 (c15Kostr)

ncbi_submitter: SRCAMB


ncbi_organism_name: Eubacterium sp.


ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Medical and Environmental Biotechnology Laboratory, Islamic University, Kushtia-7003, Bangladesh


ncbi_organism_name: Corynebacterium belfantii

ncbi_submitter: Divison of Bacterial Diseases, Centers for Disease Control


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: Escuela Nacional de Ciencias Biologicas


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_organism_name: uncultured Burkholderiaceae bacterium


ncbi_organism_name: uncultured Solibacteraceae bacterium


ncbi_isolate: SPRUCE 575

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_strain_identifiers: SPRUCE 575

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Roseovarius sp.


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Xiamen University


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Leucobacter soli

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: Jiangnan University


ncbi_organism_name: uncultured Spirochaetales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: uncultured actinomycete

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Paraphotobacterium marinum

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_isolation_source: soil

ncbi_organism_name: Chloroflexi bacterium UBA6042

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__unclassified Chloroflexota;s__Chloroflexi bacterium UBA6042


ncbi_isolation_source: gut

ncbi_organism_name: Clostridiales bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Gilliamella sp. BG1

ncbi_submitter: Zhejiang University


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1444

ncbi_submitter: Broad Institute


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_isolation_source: sewage

ncbi_submitter: SC


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: China: WuHan

ncbi_isolation_source: wholesale market

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_isolation_source: pus

ncbi_organism_name: Escherichia coli

ncbi_submitter: Children's Hospital affiliated to Zhejiang University School of Medicine


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Microbacterium sp. Root1433D1

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: University of Turin


ncbi_organism_name: uncultured Maribacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Denmark: Kgs. Lyngby

ncbi_isolation_source: pool of bioreactors CSTR01a; CSTR02a; and CSTR03a; thermophilic anaerobic digestion of cattle manure in continuous reactors for biogas production (methane)

ncbi_organism_name: Clostridiales bacterium DTU023

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Streptomyces baarnensis

ncbi_strain_identifiers: NRRL B-2842

ncbi_submitter: University of Illinois


ncbi_organism_name: Komagataeibacter europaeus LMG 18890

ncbi_submitter: Tokyo University of Agriculture


ncbi_assembly_name: freshwater MAG --- MJ130617A_bin-286

ncbi_organism_name: uncultured Geobacteraceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 5 / E; 5m depth; 0.2 filter

ncbi_organism_name: Bacteroidetes bacterium GWE2_40_15

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium GWE2_40_15


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Eubacterium ventriosum

ncbi_submitter: EMG


ncbi_organism_name: Flavobacterium aureirubrum

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Xanthomarina sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_assembly_name: freshwater MAG --- C-4_bin-130

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Methylococcaceae bacterium


ncbi_country: China: Xinjiang

ncbi_isolation_source: lung

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Xinjiang Academy of Agricultural and Reclamation Science


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Paraburkholderia terricola

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: Bethesda

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: uncultured Helicobacter sp.


ncbi_country: Russia: Moscow

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: Kiloniellaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: aquifer sediment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;s__Candidatus Kaiserbacteria bacterium GW2011_GWC2_49_12


ncbi_isolation_source: Seto Island Sea

ncbi_organism_name: Sulfitobacter sp. M77

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Leibniz Institute of Photonic Technology


ncbi_submitter: Sanger Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;s__Yersinia enterocolitica;sb__Yersinia enterocolitica subsp. enterocolitica;x__Yersinia enterocolitica subsp. enterocolitica 8081


ncbi_assembly_name: Salmonella enterica CVM N51292 v1.0

ncbi_country: USA: NM

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_isolation_source: soil

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: China National Centre for Food Safety Risk Assessment


ncbi_country: Germany

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: United Kingdom

ncbi_isolation_source: Freshwater sample from upstream of wastewater treatment plant

ncbi_submitter: The REHAB Consortium


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Australia

ncbi_isolation_source: beef

ncbi_strain_identifiers: EPEC 940a

ncbi_submitter: Shanghai Customs


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Prosthecobacter debontii

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: domestic - horses

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Asaia siamensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: Technical University of Denmark


ncbi_country: USA

ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Daviesbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Daviesiibacteriota;x__unclassified Candidatus Daviesbacteria;s__Candidatus Daviesbacteria bacterium


ncbi_strain_identifiers: NCTC 7744

ncbi_submitter: Campden BRI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Birkenhead


ncbi_country: Canada: Scotian Shelf

ncbi_isolation_source: pooled samples from sponge host and sea water

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: SponGES


ncbi_country: Croatia: Zagreb

ncbi_isolation_source: blood culture

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Croatian Veterinary Institute, Zagreb


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_country: Australia: Magnetic Island; QLD

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Porticoccaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_isolation_source: Faeces


ncbi_isolation_source: clinical material

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: China: Yangjiang

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Citrobacter sp. RHBSTW-00887

ncbi_submitter: The REHAB Consortium


ncbi_country: Austria

ncbi_isolation_source: throat

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: AGES


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Defluviitaleaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Aeromonas sp.

ncbi_submitter: EBI


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Porphyromonas sp.


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Sumerlaeota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__unclassified Candidatus Sumerlaeota;s__Candidatus Sumerlaeota bacterium


ncbi_organism_name: uncultured Clostridium sp.


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Morganella morganii

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ahrensia kielensis

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_country: Lebanon: Byblos

ncbi_isolation_source: Genitourinary

ncbi_organism_name: Escherichia coli LAU-EC2

ncbi_submitter: Lebanese American University


ncbi_country: Sudan

ncbi_isolation_source: from patients with mycetoma infections

ncbi_organism_name: Streptomyces sudanensis

ncbi_submitter: Newcastle University


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Portugal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_organism_name: uncultured Dehalococcoidaceae bacterium


ncbi_country: Turkey: Mardin; Savur

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Commensalibacter communis

ncbi_submitter: ghent university


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: New Zealand: Canterbury

ncbi_isolation_source: Pernasal

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: University of Bath


ncbi_assembly_name: freshwater MAG --- MJ110927B_bin-492

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: tissue

ncbi_organism_name: Bacteroides fragilis str. S36L11

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides fragilis;x__Bacteroides fragilis str. S36L11


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Acinetobacter guillouiae

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_organism_name: Alistipes finegoldii DSM 17242

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes finegoldii;x__Alistipes finegoldii DSM 17242


ncbi_country: China:[East China Sea]

ncbi_isolation_source: marine sediment[ENVO:03000033]

ncbi_organism_name: Thermomonas sp. XSG

ncbi_strain_identifiers: XSG

ncbi_submitter: Institute of Urban Environment, Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Rhizobium sp.


ncbi_country: USA: TX

ncbi_isolation_source: Swine feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Texas Tech University


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_organism_name: Metallibacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: India

ncbi_isolation_source: endotracheal aspirate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China

ncbi_isolation_source: food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD8413

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: Polaribacter gangjinensis

ncbi_submitter: Cong Sun Research Group


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDK8D44P

ncbi_submitter: South China Agricultural University


ncbi_country: Germany

ncbi_isolation_source: rectal

ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_country: Brazil:Sao Paulo; Jaboticabal

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Instituto Adolfo Lutz


ncbi_submitter: IBIS, Université Laval

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Aeromonadales;f__Aeromonadaceae;g__Aeromonas;s__Aeromonas salmonicida;sb__Aeromonas salmonicida subsp. salmonicida;x__Aeromonas salmonicida subsp. salmonicida 01-B526


ncbi_isolation_source: nodule

ncbi_organism_name: Bradyrhizobium sp. CCBAU 51745

ncbi_strain_identifiers: CCBAU 51745

ncbi_submitter: China Agricultural University


ncbi_country: Sweden

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Usitatibacter sp.


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Reyranella sp.


ncbi_organism_name: Faecalibaculum rodentium


ncbi_country: Canada: Ontario

ncbi_isolation_source: dairy cattle manure digester

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: JPIAMR ARMIS


ncbi_isolate: CB1 bin5

ncbi_organism_name: Prevotella sp.

ncbi_strain_identifiers: CB1 bin5


ncbi_country: Chile: Valdivia

ncbi_isolation_source: carcass

ncbi_organism_name: Bacillus anthracis


ncbi_strain_identifiers: KTS.20.012 TP.THY

ncbi_submitter: Saint-Petersburg Pasteur Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_organism_name: Mesorhizobium sp. M0074

ncbi_submitter: Washington State University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Laboratory

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: Uganda: Bwera General Hospital

ncbi_isolation_source: wound

ncbi_submitter: Makerere University


ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: Rothia aeria

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_organism_name: Rhodococcus rhodochrous J3

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Shewanella glacialipiscicola

ncbi_submitter: Toho University


ncbi_country: South Korea

ncbi_isolation_source: oil-contaminated soil

ncbi_organism_name: Kaistella soli

ncbi_submitter: Korea University


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: pickled mussels

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: King Mongkut University of Technology Thonburi


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: South Korea: Daecheong

ncbi_isolation_source: plant root

ncbi_organism_name: Pseudomonas sp. DR 5-09

ncbi_submitter: Chungnam National University


ncbi_country: China: shandong

ncbi_isolation_source: Puncture fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: USA: North Carolina

ncbi_organism_name: Xylella fastidiosa subsp. fastidiosa

ncbi_submitter: Institute for Sustainable Agriculture - CSIC


ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: RIKEN-BRC


ncbi_isolation_source: gut content

ncbi_organism_name: Lactococcus muris

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: USA: New York City

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Columbia University Mailman School of Public Health


ncbi_isolation_source: soil

ncbi_organism_name: Klebsiella sp. Z2

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Thailand

ncbi_isolation_source: Nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: nasal sample

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Denmark

ncbi_strain_identifiers: Broiler parent99

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx


ncbi_country: China: Ningxia

ncbi_isolation_source: pus

ncbi_organism_name: Staphylococcus aureus M1

ncbi_submitter: Ningxia medical university general hospital


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Mitsuokella sp.


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Paratractidigestivibacter faecalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: FSRIVI "Virome" Rospotrebnadzor


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_organism_name: Sphingorhabdus sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Pedobacter suwonensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: The Second Affiliated Hospital & Yuying Children's Hospital of Wenzhou Medical University


ncbi_organism_name: Eggerthellaceae bacterium


ncbi_organism_name: uncultured Rhizobium sp.


ncbi_organism_name: Streptomyces lacaronensis

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Enterobacter sp. 04-C-07-SI-ECC

ncbi_submitter: TRAPREA


ncbi_organism_name: uncultured Burkholderiaceae bacterium


ncbi_submitter: Universidad del Pais Vaso/Euskal Herriko Unibertsitatea (UPV/EHU)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: University of East Anglia


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: University of California San Francisco


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: Institute of Microbiology, Czech Academy of Sciences


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Salmonella sp. NW892

ncbi_submitter: Sichuan University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Pacific Ocean

ncbi_isolation_source: Hadal surficial sediment

ncbi_submitter: Scripps Institution of Oceanography


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Salmonella sp. ZJHZ21_0176

ncbi_submitter: Zhejiang university


ncbi_organism_name: Haemophilus seminalis

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: uncultured Bacteroidaceae bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Enterococcus sp. DIV1747b

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Exeter


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: Hungary: Szeged biogas plant

ncbi_isolation_source: Anaerobic sludge from Szeged Biogas Plant

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Szeged


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_submitter: University of Calgary


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: China

ncbi_organism_name: Maribellus sp. YY47

ncbi_submitter: Tongji University


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Colombia: Antioquia; Medellin

ncbi_isolation_source: Rectal swab

ncbi_submitter: University of Antioquia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Antarctica

ncbi_isolation_source: sea water

ncbi_organism_name: Pararhizobium sp. IMCC3301

ncbi_submitter: Inha University


ncbi_country: USA

ncbi_submitter: University of Florida


ncbi_organism_name: Neobacillus vireti

ncbi_submitter: Auburn University


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Pseudosulfitobacter pseudonitzschiae

ncbi_submitter: Shantou University


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_country: China: Tianjin

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Experimental Hematology, National Clinical Research Center for Blood Disease


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acidimicrobiia bacterium


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_country: Germany: Muenster

ncbi_isolation_source: sputum

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: University Hospital Muenster


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: South Korea

ncbi_organism_name: Billgrantia antri

ncbi_submitter: Dongguk University, Biomedi Campus


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_isolation_source: Human

ncbi_organism_name: Shigella flexneri 3a

ncbi_submitter: Institute of Infection, Veterinary & Ecological Sciences


ncbi_isolation_source: sludge

ncbi_organism_name: Tessaracoccus lacteus

ncbi_submitter: South China Agricultural University


ncbi_country: Portugal: North and Centre

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Faculty of Pharmacy, University of Porto


ncbi_country: Finland

ncbi_organism_name: Lactobacillus helveticus

ncbi_strain_identifiers: CIRM-BIA 114

ncbi_submitter: Brigham Young University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Brazil: Gravata; Pernambuco

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_country: Thailand: Trang

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: United Kingdom

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Life Sciences


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bacillus safensis

ncbi_submitter: EMG


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Antarctic soil

ncbi_organism_name: Pseudomonas sp. ATCC PTA-122608

ncbi_strain_identifiers: ATCC PTA-122608

ncbi_submitter: UC Davis


ncbi_organism_name: gamma proteobacterium HTCC5015

ncbi_submitter: Moore Foundation


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: UR oenologie


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_country: Switzerland: Boppelsen

ncbi_isolation_source: Origanum marjorana

ncbi_organism_name: Pseudomonas koreensis

ncbi_submitter: Agroscope


ncbi_organism_name: Rhodoluna sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: stool

ncbi_organism_name: Bacillus sp. Marseille-Q1617

ncbi_submitter: URMITE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. Marseille-Q1617


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_submitter: City University of Hong Kong


ncbi_country: Italy: Bologna

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Parachlamydiales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Escherichia sp. WS498

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Ornithinibacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Cedecea neteri

ncbi_submitter: College of Agricultural


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Tenacibaculum jejuense

ncbi_submitter: INRA


ncbi_isolation_source: glacier

ncbi_organism_name: Cryobacterium sp. TmT3-12

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA: Atlanta; GA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Emory University


ncbi_organism_name: Candidatus Babeliales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;x__unclassified Candidatus Babeliales;s__Candidatus Babeliales bacterium


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: Xiamen University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: human skin

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: NHGRI/NIH


ncbi_country: USA: Florida

ncbi_isolation_source: blue hole oxygen minimum zone seawater 60 m

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Russia: Moscow

ncbi_isolation_source: urine

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Yellow Sea Fisheries Research Institute


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Porticoccaceae bacterium


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 133 (4-4466519)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 133 (4-4466519)


ncbi_country: Ecuador: Quebrada Portada; Cayambe

ncbi_isolation_source: Sediments from irrigation channel

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Universidad Tecnica de Ambato


ncbi_organism_name: Succiniclasticum sp.

ncbi_submitter: McGill University


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: China: Zhejiang

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Peru: Lima

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Thailand

ncbi_isolation_source: intestine

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Kasetsart University


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal Fluminense


ncbi_country: China: Qinghai Province

ncbi_isolation_source: intestine contents

ncbi_organism_name: Gordonia jinghuaiqii

ncbi_submitter: China CDC


ncbi_country: Spain: Salamanca

ncbi_organism_name: Micromonospora aurantiaca (nom. illeg.)

ncbi_submitter: Universidad de Salamanca


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Prince of Songkla University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EMG


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_organism_name: Blautia sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: Saudi Arabia

ncbi_isolation_source: feces

ncbi_submitter: FDA/CFSAN


ncbi_country: Brazil: Canaa dos Carajas

ncbi_isolate: AMD

ncbi_isolation_source: surface water and sediment from copper mine drainage

ncbi_organism_name: Hydrotalea sp. AMD

ncbi_strain_identifiers: AMD

ncbi_submitter: Brazilian Microbiome Project


ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Italy: Bologna

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_country: USA: PA

ncbi_isolation_source: leaf sample

ncbi_organism_name: Xanthomonas hortorum pv. pelargonii

ncbi_submitter: Ohio State University


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: SAR86 cluster bacterium AG-422-E19

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium AG-422-E19


ncbi_assembly_name: Rumen uncultured genome RUG12539

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Roseburia intestinalis


ncbi_country: Japan: Ishikawa

ncbi_isolation_source: Joint fluid

ncbi_submitter: Kanazawa University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_country: USA: WIsconsin

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. rh206

ncbi_submitter: Cornell University