ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_isolation_source: erythrocytes

ncbi_strain_identifiers: Florida Relapse

ncbi_submitter: University of Florida College of Veterinary Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;g__Anaplasma;s__Anaplasma marginale;x__Anaplasma marginale str. Florida Relapse


ncbi_assembly_level: Scaffold

ncbi_country: USA

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Rifle; CO

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Rifle well CD01 at time point 1 / A; 5m depth; 0.1 filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wildermuthiibacteriota;s__Candidatus Wildermuthbacteria bacterium GWA1_49_26


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Pennsylvania; Pittsburgh

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: University of Pittsburgh School of Medicine


gtdb_representative: t

ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Azospirillum sp.

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D3_bin-0310

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-10504

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: University of Waterloo


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: WA

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Washington


ncbi_assembly_level: Complete Genome

ncbi_country: Philippines: Iloilo

ncbi_isolation_source: shrimp pond

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: National Fisheries Research and Development Institute (NFRDI)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Vescimonas sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Tayloriibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tayloriibacteriota;x__unclassified Candidatus Tayloriibacteriota;s__Candidatus Tayloriibacteriota bacterium


ncbi_assembly_name: freshwater MAG --- MJ111018A_bin-798

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_country: China

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine, Zhejiang University


ncbi_isolate: Faeces

ncbi_isolation_source: ROAR

ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR 1137 IAME


ncbi_country: USA: NYC

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: JCVI


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Ligilactobacillus aviarius

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Bulgaria: Rila Mountain

ncbi_isolation_source: home-made Bulgarian yoghurt prepared without industrial starter cultures

ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_submitter: Faculty of Biology at Sofia University "St. Kliment Ohridski"


ncbi_country: USA: PA

ncbi_isolation_source: feces

ncbi_organism_name: Shigella flexneri

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: Australia: Western Australia; Roebuck Bay

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Federation University Australia


ncbi_isolation_source: environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: URMITE


ncbi_isolation_source: environmental

ncbi_submitter: South China University of Technology


ncbi_country: Norway: Telemark

ncbi_organism_name: Bacteroides hominis

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Enterobacter sp. 22499

ncbi_submitter: Yantai University


ncbi_organism_name: Aeromonas bestiarum

ncbi_submitter: Nanjing Agriculture University


ncbi_submitter: National Medicines Institute


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Sao Paulo


ncbi_assembly_level: Chromosome

ncbi_country: USA: Detroit; Michigan

ncbi_isolation_source: lung

ncbi_organism_name: Bordetella bronchiseptica

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Enterococcus faecium EnGen0258

ncbi_submitter: Broad Institute


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 214

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_strain_identifiers: SNUC 823

ncbi_submitter: University of Calgary


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Tang lab


ncbi_country: China:Hubei; Wuhan

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Granulosicoccaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: EMG


ncbi_country: France

ncbi_isolation_source: Shellfish

ncbi_organism_name: Campylobacter sp. IFREMER_LSEM_CL1085

ncbi_submitter: IFREMER


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Actinomycetota bacterium


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Vienna


ncbi_country: USA: Colorado

ncbi_isolation_source: fecal swab male ferret; 6.3 years old

ncbi_organism_name: Cellulosilyticum sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Gardnerella vaginalis


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_submitter: Swiss Tropical and Public Health Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Kiloniellaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Belgium

ncbi_isolation_source: Sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: Azospira sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: Bloomington Illinois

ncbi_isolation_source: Urban topsoil

ncbi_organism_name: Massilia sp. ZL223

ncbi_submitter: Illinois Wesleyan University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Coprococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: [Eubacterium] brachy

ncbi_submitter: EMG


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Germany

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Treponema sp. OMZ 787

ncbi_strain_identifiers: OMZ 787

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus T25611

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_country: Canada: Calgary

ncbi_isolation_source: chemostat inoculated with river sediment

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_organism_name: Streptomyces sp. NRRL F-5630

ncbi_strain_identifiers: NRRL F-5630

ncbi_submitter: University of Illinois


ncbi_country: China

ncbi_isolation_source: wound

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_country: Russia: Kara Sea

ncbi_isolation_source: cold seawater

ncbi_organism_name: Pseudoalteromonas sp. PAMC 22718

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Paenibacillus sp. FSL L8-0436

ncbi_submitter: Penn State


ncbi_organism_name: Lancefieldella parvula


ncbi_country: Chile

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Switzerland

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: uncultured Lichenihabitans sp.

ncbi_submitter: Spribille Lab


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Alberta


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Texas

ncbi_isolation_source: Endocarditis

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: The University of Texas at Dallas


ncbi_country: India:Tandi; Lahaul & Spiti

ncbi_isolation_source: fermented food

ncbi_organism_name: Weissella cibaria

ncbi_submitter: CSIR-Institute of Himalayan Bioresource Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Madagascar: Antananarivo

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Institut Pasteur de Madagascar

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Bacteroidales bacterium UBA1180

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1180


ncbi_isolation_source: feces

ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_country: Israel

ncbi_isolation_source: rectal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: tel-aviv sourasky medical center


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR3084

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: Ohio

ncbi_isolation_source: oral cavity

ncbi_organism_name: Actinomyces oris

ncbi_submitter: Ohio State University


ncbi_country: China: Guangzhou

ncbi_strain_identifiers: ST11 CRKP12

ncbi_submitter: PLA Southern Theater General Hospital


ncbi_organism_name: Pantoea vagans


ncbi_country: Antarctica

ncbi_isolation_source: Antarctic lake sediment

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: Universidad de la Republica


ncbi_organism_name: uncultured Winogradskyella sp.

ncbi_submitter: EMG


ncbi_country: China: Bubeng

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Ponticoccus sp. SC6-38

ncbi_submitter: Shantou University


ncbi_country: Australia

ncbi_isolation_source: lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of New South Wales


ncbi_country: China: Guangxi

ncbi_isolation_source: soil of Bruguiera gymnorrhiza root

ncbi_organism_name: Martelella alba

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: BGMRC 2036

ncbi_submitter: Guangxi University of Chinese Medicine

ncbi_type_material_designation: assembly from type material


ncbi_isolate: CON4 bin27

ncbi_organism_name: Bacteroidales bacterium

ncbi_strain_identifiers: CON4 bin27

ncbi_submitter: China Agricultural University


ncbi_organism_name: Cyclobacterium qasimii M12-11B

ncbi_submitter: Centre for Cellular and Molecular Biology


ncbi_organism_name: uncultured Elusimicrobium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Faculty of Medicine, Prince of Songkla University


ncbi_organism_name: Streptomyces parvulus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: France: Meurthe et Moselle

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Bundeswehr


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Zhejiang

ncbi_isolation_source: CDI patient

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nestle Research Center


ncbi_organism_name: Pseudonocardia sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_submitter: Zhejiang University


ncbi_country: Denmark: Copenhagen

ncbi_organism_name: Streptococcus gallolyticus subsp. gallolyticus

ncbi_submitter: Region Zealand


ncbi_strain_identifiers: SGSC 2487

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo;x__Salmonella enterica subsp. enterica serovar Montevideo str. SARB30


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_isolation_source: Faeces


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD9005

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: Spain: Huelva

ncbi_isolation_source: Acidic sediment

ncbi_organism_name: Desulfurella amilsii

ncbi_submitter: Wageningen University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Planosporangium spinosum

ncbi_submitter: Kasetsart University


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: sediment trap from marine abyssalpelagic zone

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Bangladesh: Gazipur

ncbi_isolation_source: Capsicum annum rhizoplane

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Bangabandhu Sheikh Mujibur Rahman Agricultural University


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Queensland


ncbi_country: Canada: Chicoutimi

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_country: USA: Chicago; Lake Michigan

ncbi_isolation_source: littoral zone

ncbi_organism_name: Porphyrobacter sp. LM 6

ncbi_strain_identifiers: LM 6

ncbi_submitter: The University of Chicago


ncbi_organism_name: Candidatus Vecturithrix sp.

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy: d__Bacteria;p__Candidatus Moduliflexota;c__Candidatus Vecturitrichia;o__Candidatus Vecturitrichales;f__Candidatus Vecturitrichaceae;g__Candidatus Vecturithrix;s__

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Moduliflexota;c__Candidatus Vecturitrichia;o__Candidatus Vecturitrichales;f__Candidatus Vecturitrichaceae;g__Candidatus Vecturithrix;x__unclassified Candidatus Vecturithrix;s__Candidatus Vecturithrix sp.


ncbi_isolation_source: pig carcass

ncbi_organism_name: Escherichia coli

ncbi_submitter: University Hospital Muenster


ncbi_country: Germany: Pomerania

ncbi_isolation_source: rhizosphere of oilseed rape

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Spanish National Centre for Biotechnology


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: cold seep

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Poseidonia sp.

ncbi_submitter: Tang lab

ncbi_taxonomy: d__Archaea;p__Thermoplasmatota;c__Candidatus Poseidoniia;o__Candidatus Poseidoniales;f__Candidatus Poseidoniaceae;g__Candidatus Poseidonia;s__

ncbi_taxonomy_unfiltered: d__Archaea;x__Methanobacteriati;p__Thermoplasmatota;c__Candidatus Poseidoniia;o__Candidatus Poseidoniales;f__Candidatus Poseidoniaceae;g__Candidatus Poseidonia;x__unclassified Candidatus Poseidonia;s__Poseidonia sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Belgium

ncbi_isolation_source: leaves

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Aarhus University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: University of Southern California


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Dietzia kunjamensis

ncbi_submitter: Institute for Cellular and Intracellular Symbiosis UB RAS


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces sp. NPDC057020

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Saudi Arabia: KAUST

ncbi_isolation_source: anammox marine column reactor biofilm on non-woven sheet

ncbi_submitter: KAUST


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_submitter: UNC Chapel Hill


ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Tissierellia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Elizabethkingia anophelis subsp. anophelis

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_country: Australia: Brisbane

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Australia

ncbi_isolation_source: Casey Hospital

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Monash University


ncbi_country: Germany: Freising

ncbi_isolation_source: Caecal content

ncbi_organism_name: Murimonas intestini

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Norway

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: St. Olav University Hospital


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: infant food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Wuhan Polytechnic University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_isolation_source: Milk sample

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Guru Angad Dev Veterinary and Animal Sciences University


ncbi_country: China: Chengdu

ncbi_isolation_source: Pork meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus haemolyticus


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Synechococcus sp. SFB_13D_100_45

ncbi_submitter: Stanford University


ncbi_organism_name: Metamycoplasmataceae bacterium


ncbi_country: USA: Arizona

ncbi_isolation_source: eye

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Northern Arizona University


ncbi_country: Germany

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: South Korea: Bigeum

ncbi_isolation_source: Sea mud

ncbi_organism_name: Marivirga arenosa

ncbi_submitter: Korea research institute of Bioscience and Biotechnology


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater under a natural surface slick

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Linnaeus University


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: USA

ncbi_isolation_source: Feedlot fecal swab

ncbi_submitter: US Meat Animal Research Center


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces sp. NBC_01340

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Hong Kong


gtdb_type_species_of_genus: t

ncbi_country: Thailand

ncbi_isolation_source: Soil collected from a tropical rainforest; Chiang Mai; Thailand

ncbi_organism_name: Actinomycetospora chiangmaiensis DSM 45062

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Mount Sinai School of Medicine


ncbi_country: China: Beijing

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: China CDC


ncbi_country: Japan: Kanto

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Candidatus Blautia pullicola

ncbi_submitter: Quadram Institutte


ncbi_country: China

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Legionella beliardensis

ncbi_strain_identifiers: Wilkinson 1407-AL-H

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Brazil

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: SurvCARE


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Legionellales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_assembly_name: Salmonella enterica CVM N51287 v1.0

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,5,12:i:-


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Chicago


ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: bacterium

ncbi_submitter: University of Alberta


ncbi_country: China: Ningbo

ncbi_isolation_source: bile

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Ningbo First Hospital


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Brevundimonas diminuta

ncbi_submitter: SC


ncbi_country: Saudi Arabia: Red Sea

ncbi_organism_name: Halomonas sp.


ncbi_isolation_source: microbes were collected at JL-Dive96-S01

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Treponema sp.

ncbi_submitter: UIUC


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Department of Microbiology, Juntendo University School of Medicine


ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: Lacrimispora celerecrescens


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_country: Switzerland: Basel

ncbi_isolation_source: Cooling tower

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_assembly_name: Rumen uncultured genome RUG12379

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Nocardia jiangxiensis NBRC 101359

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Russia: Tver region

ncbi_isolation_source: Food products (fish)

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: SRCAMB


ncbi_organism_name: Terrimesophilobacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_country: USA: Austin

ncbi_organism_name: Gilliamella sp. Gris3-2

ncbi_submitter: University of Texas at Austin


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland

ncbi_isolation_source: milk

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Bern


ncbi_organism_name: Streptomyces antibioticus

ncbi_submitter: Bielefeld University


ncbi_country: USA: California

ncbi_organism_name: Rhodococcoides corynebacterioides

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine water

ncbi_organism_name: cyanobacterium Cyano2

ncbi_submitter: Max planck institute for marine microbiology


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Woeseiaceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_isolation_source: The Red Sea

ncbi_organism_name: Sulfitobacter sp. KE5

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_country: USA

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Yessentuki

ncbi_isolation_source: subsurface water

ncbi_organism_name: Candidatus Edwardsbacteria bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Edwardsiibacteriota;x__unclassified Candidatus Edwardsbacteria;s__Candidatus Edwardsbacteria bacterium


ncbi_organism_name: Paenibacillus sp. FSL W8-0186

ncbi_submitter: Penn State


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: China

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Pantoea sp. UBA4389

ncbi_submitter: University of Queensland


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Parasutterella excrementihominis YIT 11859

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Italy

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: EMG


ncbi_organism_name: Bacillus cereus group sp. RP29

ncbi_submitter: Korea Food Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. RP29


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: Biopesticide Novodor 3FC

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: University of Zurich


ncbi_organism_name: Rahnella aquatilis

ncbi_submitter: Monash University


ncbi_country: USA: Chesapeake Bay; Maryland

ncbi_isolation_source: surface seawater

ncbi_organism_name: Pseudoalteromonas sp. SG45-3

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: Germany: Muencheberg

ncbi_isolate: bin co1

ncbi_isolation_source: Plant leaves

ncbi_organism_name: Methylorubrum extorquens

ncbi_strain_identifiers: bin co1

ncbi_submitter: Leibniz Centre for Agricultural Landscape Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lachnospira sp.

ncbi_submitter: AAFC


ncbi_organism_name: Streptococcus mutans UA159

ncbi_submitter: Univ. Oklahoma


ncbi_organism_name: Candidatus Obscuribacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Obscuribacterales;f__Candidatus Obscuribacteraceae;g__Candidatus Obscuribacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;f__Candidatus Obscuribacteraceae;g__Candidatus Obscuribacter;x__unclassified Candidatus Obscuribacter;s__Candidatus Obscuribacter sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Ruminococcus sp. f11

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_organism_name: Azospirillum sp. CT11-132

ncbi_submitter: North Carolina State University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Colon

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: urine

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: Tissue sample

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Huazhong Agricultural University


ncbi_country: South Korea

ncbi_isolation_source: seawater

ncbi_organism_name: Roseobacter ponti

ncbi_submitter: Georg-August-University Goettingen


ncbi_country: India

ncbi_isolation_source: algal mat

ncbi_organism_name: Rubinisphaera sp. JC750

ncbi_submitter: JNTUH


ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Poland: Lesser Poland; Barycz

ncbi_isolation_source: Brine

ncbi_organism_name: Chromohalobacter sp. 11-W

ncbi_submitter: University of Lodz


ncbi_submitter: FDA Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: Peru:Loreto; Peruvian Amazon; Santo Tomas

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: fermented cherry tomato

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: ELAB 48C

ncbi_submitter: Vilnius University


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Para

ncbi_isolation_source: lymph node

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Universidade Federal do Para


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: VA

ncbi_isolation_source: creek water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada

ncbi_isolation_source: Bean Sprouts

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: China: Shanxi

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Roseburia intestinalis XB6B4

ncbi_submitter: metaHIT


ncbi_organism_name: Achromobacter ruhlandii


ncbi_country: USA: La Jolla

ncbi_isolation_source: sample SPH; anode biofilm adapted to +100 mV

ncbi_organism_name: Geobacter sp.

ncbi_submitter: Japan Agency for Marine-Earth Science and technology


ncbi_isolation_source: ocular surface of healthy person

ncbi_organism_name: Microbacterium sp. EYE_384

ncbi_submitter: China CDC


ncbi_organism_name: Streptomyces sp. NPDC005356

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: feces

ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: AAFC


ncbi_assembly_name: freshwater MAG --- Loc090519-4m_bin-413

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_country: China: Zhejiang

ncbi_isolation_source: activated sludge

ncbi_organism_name: Vreelandella piezotolerans

ncbi_submitter: Zhejiang Ocean University


ncbi_country: China

ncbi_isolation_source: seawater from South China Sea

ncbi_organism_name: Oceanibaculum nanhaiense

ncbi_submitter: State of Oceanic Administration


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: Turkey

ncbi_submitter: JMI Laboratories


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Klebsiella sp. 98583

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_organism_name: Parabacteroides distasonis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Xiamen University


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA

ncbi_isolation_source: synovial fluid

ncbi_organism_name: Chlamydia psittaci

ncbi_strain_identifiers: GIMC 2003:Cps25SM

ncbi_submitter: N.F.Gamaleya Research Center for Epidemiology and Microbiology


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptomyces koyangensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Spain

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_country: China: Tibetan Plateau

ncbi_isolation_source: Tibetan Plateau lake

ncbi_organism_name: Arthrobacter sp. 9E16

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_country: India: Arunachal Pradesh

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: All India Institute Of Medical Science Bhopal


ncbi_country: USA: California; Eel River; Larabee Creek near mouth

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Opitutaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella sp. LSP 438/15

ncbi_submitter: University of Oviedo


ncbi_country: USA: Wisconsin

ncbi_isolation_source: cheese

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Wisconsin-Madison and Utah State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Enterorhabdus sp.


ncbi_country: China: Shenzhen

ncbi_organism_name: Erysipelatoclostridium sp. AM42-17

ncbi_submitter: BGI


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Qipengyuania sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_assembly_name: freshwater MAG --- Loc090519-1m_bin-1399

ncbi_organism_name: uncultured Algoriphagus sp.

ncbi_submitter: BILS


ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Coprococcus eutactus

ncbi_submitter: University of Chicago


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: Galala University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Parma


ncbi_organism_name: Blastomonas fulva

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: Methylopila henanensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Parabacteroides sp. ASD2025

ncbi_submitter: Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Butyricimonas virosa


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Pontimonas sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Melioribacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pantoea dispersa

ncbi_submitter: Central & Clinical Laboratory of Sanya People's Hospital


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: doe


ncbi_submitter: Kenya Medical Research Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: EPFL


ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_organism_name: Lentilactobacillus buchneri subsp. silagei

ncbi_submitter: Erciyes University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Breda


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Lactobacillus helsingborgensis


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: cucumber

ncbi_organism_name: Escherichia coli

ncbi_submitter: Qingdao Agricultural Universtiy


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: Amylibacter sp.

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_organism_name: Pantoea agglomerans

ncbi_strain_identifiers: PaHJ

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Greece: Crete

ncbi_isolation_source: root

ncbi_organism_name: Pseudomonas sp. CM25

ncbi_submitter: University of Exeter


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia producta

ncbi_submitter: University of Chicago


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: University College Cork


ncbi_organism_name: [Lactobacillus] rogosae


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_country: Japan

ncbi_isolation_source: a piece of sunken bamboo in the marine environment

ncbi_organism_name: Thalassospira alkalitolerans

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: Chesapeake Bay

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Clemson University


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Northwest A&F University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Turkey

ncbi_isolation_source: Orontes river

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Paratyphi A

ncbi_submitter: UNIVERSITY OF WARWICK


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Genome Institute of Singapore


ncbi_country: Brazil

ncbi_organism_name: Streptomyces hilarionis

ncbi_strain_identifiers: IBSBF 2807

ncbi_submitter: UFSCar


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Nannocystaceae bacterium

ncbi_submitter: Tsinghua University


ncbi_country: Portugal: North and Centre

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Faculty of Pharmacy, University of Porto


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mitis


ncbi_isolation_source: Urine

ncbi_submitter: SC


ncbi_country: China: Shandong

ncbi_isolation_source: blood

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Faecalibaculum rodentium


ncbi_country: USA: Livermore; CA

ncbi_isolation_source: microalgal biofuel cultivation pond

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Lawrence Livermore National Laboratory


ncbi_country: Malaysia

ncbi_isolation_source: Gastric Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Malaya-University of Western Australia


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA

ncbi_isolation_source: Skin swab

ncbi_organism_name: Corynebacterium simulans

ncbi_submitter: NHGRI


ncbi_country: United Kingdom

ncbi_isolation_source: Blood


ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_organism_name: Stenotrophomonas geniculata

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus


ncbi_isolation_source: healthy adult 3C

ncbi_organism_name: Clostridium sp. 26_22


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Technical University of Munich


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: China: Xiamen

ncbi_isolation_source: Synechococcus culture from coastal marine water

ncbi_organism_name: Altererythrobacter sp. XM-24bin4

ncbi_submitter: Xiamen University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Chloroflexota bacterium


ncbi_isolation_source: animal

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: Viet Nam

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Japan

ncbi_organism_name: Staphylococcus delphini

ncbi_submitter: Utrecht University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Lentimicrobiaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Puia sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_isolation_source: porcine rectal swab

ncbi_organism_name: Chlamydia suis

ncbi_submitter: Functional Genomics Genter Zurich


ncbi_country: Russia: Moscow

ncbi_isolation_source: throat

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SRCAMB


ncbi_organism_name: Enterococcus faecalis ATCC 10100

ncbi_submitter: Broad Institute


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Portland State University


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_isolation_source: milk

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: University of Parma


ncbi_country: South Korea: Gyeongsangnam-Do

ncbi_isolation_source: sea-bass

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Food-borne Pathogen Omics Research Center, FORC


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Portugal

ncbi_isolation_source: Penile

ncbi_organism_name: Treponema pallidum subsp. pallidum

ncbi_submitter: National Institute of Health, Portugal


ncbi_country: China: Yan an

ncbi_isolation_source: fermentation bed

ncbi_organism_name: Xanthomonas chitinilytica

ncbi_submitter: Yan'an University


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bifidobacterium thermacidophilum

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Ignavibacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: MA

ncbi_isolation_source: shrimp


ncbi_country: Turkey

ncbi_isolation_source: Orontes river

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus UCIM6066

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 1032241

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Chryseobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: CO

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China

ncbi_isolation_source: wastewater from WWTP

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong University


ncbi_country: USA: Kansas

ncbi_isolation_source: feces

ncbi_submitter: University of Guelph


ncbi_country: India

ncbi_isolation_source: pond

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Norwegian University of Life Sciences


ncbi_organism_name: uncultured Rhodobacteraceae bacterium


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecium UC8668

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Peptoniphilus sp.

ncbi_submitter: EMG


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Coriobacteriaceae bacterium


ncbi_country: Norway: Byfjorden; Bergen

ncbi_isolation_source: annelid root tissue scrapped from turkey femur surface after nine month of incubation underwater in a fjord

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: ProBone


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S10

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: KING ABDULAZIZ UNIVERSITY


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: University of Chicago


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: China: Guangdong; Daobaoshan

ncbi_organism_name: Acidiferrobacteraceae bacterium


ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Albert Einstein college of Medicine


ncbi_organism_name: Clostridium beijerinckii

ncbi_strain_identifiers: DSM 791

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Florida


ncbi_organism_name: Microbacterium sediminicola

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: Canada

ncbi_isolation_source: stool sample

ncbi_submitter: Public Health Agency of Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni 00-2426


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: China Agricultural University


ncbi_country: Spain: Galicia

ncbi_isolation_source: polluted sand sample from Praia da Seda beach after the Prestige tanker accident

ncbi_organism_name: Citreicella sp. 357

ncbi_submitter: Microbiologia. Universitat de les Illes Balears (UIB).


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 0.2-1 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Pseudidiomarina sp.

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Human feces

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: The University of Tokyo


ncbi_country: Germany

ncbi_isolation_source: brewery environment

ncbi_organism_name: Loigolactobacillus backii

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Pakistan: Sindh

ncbi_isolation_source: infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guangdong

ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: RSCM

ncbi_submitter: Guangdong Academy of Agricultural Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Pantoea allii

ncbi_submitter: University of Georgia


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Honduras: Francisco Morazan; Tegucigalpa

ncbi_isolation_source: Upper respiratory tract

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Christensenella sp.


ncbi_country: USA: Georgia

ncbi_isolation_source: Imported Fresh Produce

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: University of Wyoming


ncbi_organism_name: Nitrosomonadaceae bacterium

ncbi_submitter: University of Montana


ncbi_isolation_source: human gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Netherlands

ncbi_isolation_source: feces of a hospitalized patient

ncbi_organism_name: Enterococcus faecium E1071

ncbi_submitter: Dept. of Medical Microbiology, University Medical Center Utrecht


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Jiangsu

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Guangzhou Medical University


ncbi_country: South Korea: Taean

ncbi_isolation_source: salt-field sea water

ncbi_organism_name: Histidinibacterium aquaticum

ncbi_submitter: Hannam University


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0960

ncbi_submitter: Broad Institute


ncbi_country: China: Anhui

ncbi_isolation_source: Pleural effusion

ncbi_submitter: University of Science and Technology of China


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Mycobacterium leprae TN

ncbi_strain_identifiers: TN

ncbi_submitter: Sanger Institute


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Pseudonocardiales bacterium

ncbi_submitter: Colorado State University


ncbi_submitter: Animal and Plant Health Agency


ncbi_organism_name: Pontimonas sp.

ncbi_submitter: German Federation for Biological Data


ncbi_country: France

ncbi_organism_name: Coxiella burnetii

ncbi_submitter: IHU mediterranee infection


ncbi_organism_name: Paraprevotella clara

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_organism_name: Comamonas thiooxydans

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Saccharofermentanaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Corynebacterium guangdongense

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Antarctica: Western Antarctica; Livingston Island

ncbi_isolate: LIV bin34

ncbi_isolation_source: soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_strain_identifiers: LIV bin34

ncbi_submitter: Monash University


ncbi_organism_name: Rhodanobacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University


ncbi_organism_name: Latilactobacillus curvatus


ncbi_organism_name: Streptomyces hawaiiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Korobacteraceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;x__unclassified Candidatus Korobacteraceae;s__Candidatus Korobacteraceae bacterium


ncbi_organism_name: Ramlibacter sp.


ncbi_organism_name: Enterococcus sp. DIV0798

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Salmonella sp. NW189

ncbi_submitter: Sichuan University


ncbi_organism_name: Candidatus Limisoma sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limisoma;x__unclassified Candidatus Limisoma;s__Candidatus Limisoma sp.


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_submitter: Universidad del Pais Vaso/Euskal Herriko Unibertsitatea (UPV/EHU)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: Lomas Bayas Desert Soil Beside Boulder

ncbi_submitter: University of Duisburg-Essen


ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Universiti Teknologi Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Allomuricauda sp.


ncbi_organism_name: Candidatus Bipolaricaulis anaerobius

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Bipolaricaulota;c__Candidatus Bipolaricaulia;o__Candidatus Bipolaricaulales;f__Candidatus Bipolaricaulaceae;g__Candidatus Bipolaricaulis;s__Candidatus Bipolaricaulis anaerobius

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;c__Candidatus Bipolaricaulia;o__Candidatus Bipolaricaulales;f__Candidatus Bipolaricaulaceae;g__Candidatus Bipolaricaulis;s__Candidatus Bipolaricaulis anaerobius


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. enrichment culture

ncbi_submitter: Swiss Institute of Bioinformatics, Switzerland


ncbi_organism_name: uncultured Rhizobium sp.


ncbi_isolate: SPRUCE 35

ncbi_organism_name: Candidatus Binataceae bacterium

ncbi_strain_identifiers: SPRUCE 35

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;x__unclassified Candidatus Binataceae;s__Candidatus Binataceae bacterium


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: bacterium


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Bifidobacterium tibiigranuli

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Candidatus Tisiphia;x__unclassified Candidatus Tisiphia;s__Candidatus Tisiphia endosymbiont of Dascillus cervinus


ncbi_country: USA: PA

ncbi_isolation_source: animal

ncbi_organism_name: Prescottella equi

ncbi_submitter: Penn State University


ncbi_organism_name: Mesorhizobium sp. M0676

ncbi_submitter: Washington State University


ncbi_country: USA: Palo Alto; California

ncbi_isolation_source: bloodstream

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Stanford Healthcare


ncbi_isolation_source: Raw milk Havarti cheese

ncbi_organism_name: Escherichia coli

ncbi_submitter: U.S. Food and Drug Administration


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus M42184

ncbi_submitter: Broad Institute


ncbi_assembly_name: freshwater MAG --- Day6-4_bin-192

ncbi_organism_name: uncultured Ignavibacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__environmental samples;s__uncultured Ignavibacteriota bacterium


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: University of Karachi


ncbi_country: USA: Colorado

ncbi_isolation_source: spinach

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. CVM 37978


ncbi_country: India: North East

ncbi_isolation_source: fermented food

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: CSIR CFTRI


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: China: Shenzhen

ncbi_organism_name: Olsenella sp. AF21-51

ncbi_submitter: BGI


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chile: Santiago

ncbi_isolation_source: bovine

ncbi_submitter: Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile


ncbi_submitter: Zhejiang University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: USA: Fort Lauderdale Research & Education Center; Florida

ncbi_isolation_source: termite gut

ncbi_organism_name: Acidaminococcales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: WTSI


ncbi_organism_name: Curvibacter sp. AEP1-3

ncbi_submitter: Biology Centre CAS


ncbi_country: USA

ncbi_organism_name: Escherichia coli O111:NM str. K6898

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O111:NM;x__Escherichia coli O111:NM str. K6898


ncbi_isolation_source: wastewater

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_submitter: University of Georgia


ncbi_country: Poland: Warsaw

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institiute


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Taiwan

ncbi_isolation_source: Industrial hygiene control

ncbi_organism_name: Rhodovarius lipocyclicus

ncbi_submitter: National Kaohsiung University of Science and Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Russia: Sakhalin; Daginsky Spring

ncbi_organism_name: Calorimonas adulescens

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Iran: Ahvaz

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Liquorilactobacillus ghanensis

ncbi_submitter: Teagasc


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: INRA


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_country: China: JiangSu

ncbi_isolation_source: blood

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: University of Tehcnology, Sydney


ncbi_country: Bangladesh

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: North South University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter ursingii


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Comamonas aquatica

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Canada: Lacombe

ncbi_organism_name: Desulfovibrio piger

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Hallerella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Mali

ncbi_isolation_source: rice product

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Institut de Recherche pour le Developpement


ncbi_country: Brazil

ncbi_isolation_source: body fluid

ncbi_submitter: Instituto Adolfo Lutz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: USA: NY

ncbi_organism_name: Paracoccus sanguinis

ncbi_submitter: Wadsworth Center / NYSDOH


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_assembly_name: WHOF

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_strain_identifiers: WHO F

ncbi_submitter: WTSI


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_submitter: Finnish Food Authority


ncbi_organism_name: Anaerospora sp.


ncbi_country: United Kingdom: Leicester

ncbi_isolation_source: sputum

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Leicester


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Legionella genomosp. 1

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Heilongjiang province

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Shinella oryzae

ncbi_submitter: BIOTECHNOLOGY RESEARCH INSTITUTE, CAAS


ncbi_country: China

ncbi_isolation_source: faece

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: USA: Boston; Massachusetts

ncbi_isolation_source: human oral cavity

ncbi_organism_name: Schaalia sp. HMT-877

ncbi_submitter: The Forsyth Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: United Kingdom Health Security Agency


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-158

ncbi_submitter: Broad Institute


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Veillonella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: University of Cadiz


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: USA

ncbi_organism_name: Bacillus spizizenii

ncbi_submitter: Zymo Research Corporation


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Butyricimonas sp.

ncbi_submitter: Yonsei University


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolate: metabat2_pooled_hifiasm.1005 MAG

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_strain_identifiers: metabat2_pooled_hifiasm.1005 MAG

ncbi_submitter: The Roslin Institute (University of Edinburgh)


ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_isolation_source: soil

ncbi_organism_name: Peribacillus butanolivorans

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Paludibacterium purpuratum

ncbi_strain_identifiers: CECT 8976

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: USA: Texas

ncbi_submitter: ATCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_country: Japan: Niigato

ncbi_organism_name: Actinocatenispora sera

ncbi_submitter: University of Illinois


ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis


ncbi_country: China: Beijing

ncbi_isolation_source: Pepper leaves

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Chinese Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: EMG


ncbi_submitter: MRSN BI Team


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chinese People's Liberation Army General Hospital


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Raoultella ornithinolytica


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: University Hospital of Antwerp


ncbi_organism_name: Erwinia rhapontici


ncbi_organism_name: Candidatus Zhuqueibacter tengchongensis

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__;c__;o__Candidatus Zhuqueibacterales;f__Candidatus Zhuqueibacteraceae;g__Candidatus Zhuqueibacter;s__Candidatus Zhuqueibacter tengchongensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;o__Candidatus Zhuqueibacterales;f__Candidatus Zhuqueibacteraceae;g__Candidatus Zhuqueibacter;s__Candidatus Zhuqueibacter tengchongensis


ncbi_country: Singapore

ncbi_isolation_source: soil collected from tropical lawn

ncbi_organism_name: Clostridium beijerinckii G117

ncbi_submitter: National University of Singapore


ncbi_country: Romania: Bucharest

ncbi_isolation_source: wastewater

ncbi_submitter: Research Institute of University of Bucharest - ICUB


ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_submitter: UNIVERSITY HOSPITAL TUEBINGEN


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Streptomyces sp. NPDC050485

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Alachua County; Florida

ncbi_organism_name: Brucella intermedia

ncbi_submitter: University of Florida


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Dorea sp. 5-2

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Magdeburg

ncbi_isolation_source: gastric antrum

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Max von Pettenkofer-Institut


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: University of Exeter


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Pondicherry University


ncbi_country: Tunisia: Sousse

ncbi_isolation_source: urine


ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_country: China: Guangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sun Yat-sen University


ncbi_submitter: Laboratoire de sante publique du Quebec

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_organism_name: Dyella tabacisoli

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-4386

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Canada: Ontario

ncbi_isolation_source: Animal - Chicken

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. SA20090419


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_organism_name: Dietzia sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Escherichia coli


ncbi_organism_name: Legionellaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Peptostreptococcus anaerobius

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China

ncbi_isolation_source: Hospital surface

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: USA: IA

ncbi_isolation_source: bovine mammary gland

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: White Oak Rive Estuary; North Carolina

ncbi_isolation_source: Sulfate-rich zone estuary sediments 8-12 cm

ncbi_organism_name: Betaproteobacteria bacterium SG8_39

ncbi_submitter: University of Texas


ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: uncut heroin sample

ncbi_organism_name: Shouchella clausii

ncbi_submitter: Bielefeld University


ncbi_organism_name: Haliscomenobacteraceae bacterium


ncbi_isolation_source: cheese

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: University of Guelph


ncbi_country: USA: NH

ncbi_organism_name: Escherichia coli DEC9B

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Egypt

ncbi_isolation_source: Generalized

ncbi_organism_name: Mycobacterium tuberculosis variant bovis

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: University of Vienna


ncbi_organism_name: Bifidobacterium tsurumiense DSM 17777

ncbi_submitter: Key Laboratory of Dairy BiotecInner Mongolia Agricultural University