ncbi_isolation_source: agricultural environmental material

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Bacteriology, Microbiology, Osaka Institute of Public Health


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Thailand

ncbi_genome_representation: full

ncbi_isolation_source: Diarrhea

ncbi_organism_name: Vibrio paracholerae

ncbi_submitter: Los Alamos National Laboratory


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_assembly_level: Scaffold

ncbi_country: USA

ncbi_isolation_source: Invasive

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


gtdb_representative: t

ncbi_isolation_source: freshwater

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: United Kingdom

ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Rain

ncbi_organism_name: Xanthomonas euroxanthea

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: CIRAD


ncbi_country: China: Beijing

ncbi_isolation_source: patient with infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: bioMerieux - La Balme-Les Grottes


ncbi_assembly_name: B

ncbi_isolate: B

ncbi_strain_identifiers: B

ncbi_submitter: DTU


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 7-233-03_S1_C3

ncbi_submitter: IGS


ncbi_country: China: Guide

ncbi_isolation_source: adult honey bee worker gut

ncbi_organism_name: Acetobacteraceae bacterium B3987

ncbi_submitter: China Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Lethbridge


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: USA: Lusten; MN

ncbi_organism_name: Pseudomonas sp. GGS8


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: The University of Melbourne


gtdb_type_species_of_genus: t

ncbi_country: South Korea

ncbi_organism_name: Morococcus cerebrosus

ncbi_submitter: Korea University

ncbi_type_material_designation: assembly from type material


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lachnoclostridium sp.

ncbi_submitter: AAFC


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: Stool Specimen

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: icddr,b


ncbi_country: India: Kolkata

ncbi_isolation_source: blood

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Ethiopia: Oromia; West Shewa

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Benin

ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis 2004032


ncbi_isolation_source: Rectum

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Copenhagen University Hospital Hvidovre


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Spain: Santa pola

ncbi_isolation_source: banquettes

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: University of Alicante


ncbi_country: India

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: Belgium

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Sciensano


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Sardar Patel University, V.V.Nagar


ncbi_country: USA

ncbi_organism_name: Streptomyces sp. SID8381

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: Shanghai

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai municipal center for disease control and prevention


ncbi_country: Australia: Western Australia

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Queensland


ncbi_country: Portugal: Tapada de Mafra

ncbi_submitter: University of Aveiro


ncbi_country: USA: California; Lower Lake

ncbi_organism_name: Planctomycetota bacterium


ncbi_organism_name: Abditibacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Streptococcus sp.

ncbi_submitter: AAFC


ncbi_country: China: Sichuan

ncbi_isolation_source: hospital sewage

ncbi_organism_name: Kluyvera cryocrescens

ncbi_submitter: Southwest Medical University


ncbi_country: Germany

ncbi_isolation_source: military dog fecal sample

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_organism_name: Limimaricola soesokkakensis

ncbi_submitter: Tang lab


ncbi_assembly_name: Rumen uncultured genome RUG10600

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bifidobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Egypt: Alexandria

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: LBMM 6414

ncbi_submitter: University of the Basque Country


ncbi_country: China: Beijing

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Center for Disease Prevention and Control of PLA


ncbi_country: China

ncbi_organism_name: Bartonella quintana RM-11

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology, State Key Laboratory of Pathogen and Biosecurity


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Clostridium] leptum

ncbi_submitter: EMG


ncbi_country: USA: Crystal Geyser near Green River; Utah


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus sanguinis ATCC 29667

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: Nocardia cyriacigeorgica

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Turkey: Sirnak; Sirnak Merkez

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: China: Hubei

ncbi_isolation_source: lung

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: KY

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Paenibacillus lentus

ncbi_submitter: Universidad Complutense de Madrid


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: oxycline seawater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Candidatus Babeliales bacterium

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;x__unclassified Candidatus Babeliales;s__Candidatus Babeliales bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Ireland: Cork

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University College Cork


ncbi_country: USA

ncbi_isolation_source: swine facility

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ISU 982

ncbi_submitter: USDA-ARS


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: National University of Singapore


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: USA: Maryland

ncbi_submitter: University of Maryland, College Park

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. CVM22707


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Planctomicrobium piriforme


ncbi_isolation_source: oral swab from a patient with Crohn s disease

ncbi_organism_name: Bacillus sp. BT1B_CT2

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. BT1B_CT2


ncbi_isolation_source: River Don

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: UNIVERSITY OF SHEFFIELD


ncbi_organism_name: Sphingomonadales bacterium


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Erysipelotrichales bacterium

ncbi_submitter: Biomin Research Center


ncbi_isolation_source: chicken

ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Washington University School of Medicine


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P155P

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Hickory Corners; Michigan

ncbi_isolation_source: leaf-associated phyllosphere

ncbi_organism_name: Enterobacteriaceae bacterium

ncbi_submitter: Iowa State University


ncbi_isolation_source: plant surface

ncbi_organism_name: Methylococcaceae bacterium NSP1-2

ncbi_submitter: The Ohio State University


ncbi_country: Canada: Toronto

ncbi_organism_name: Eikenella sp. NML01-A-086

ncbi_submitter: Public Health Agency of Canada


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: University of Chicago


ncbi_country: Hungary

ncbi_isolation_source: tissue culture

ncbi_organism_name: Mycoplasma sp. HU2014

ncbi_submitter: University of Missouri - Columbia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Nasal swab

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Enterococcus faecalis EnGen0094


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: University of Central Punjab, Lahore


ncbi_organism_name: Thermoanaerobaculaceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_assembly_name: Rumen uncultured genome RUG586

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sciensano


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Taiwan

ncbi_isolation_source: coral reef [ENVO:00000150]|marine coral reef biome [ENVO:01000049]

ncbi_organism_name: Erythrobacteraceae bacterium WH01K

ncbi_submitter: National Chung Hsing University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: superficial water from the Indian Ocean

ncbi_organism_name: Alcanivorax sp. S71-1-4

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Australia: VIC3

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: University of queensland


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: China: Jiangmen

ncbi_organism_name: Salmonella sp. L-S2971

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Aurora; WI

ncbi_isolation_source: enrichment culture of hot tap water

ncbi_organism_name: Thermus scotoductus

ncbi_submitter: Penn State University


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: SAHMRI


ncbi_isolation_source: deep subsurface microcosm

ncbi_organism_name: uncultured Spirochaetia bacterium

ncbi_submitter: VTT Technical Research Centre of Finland Ltd


ncbi_assembly_name: freshwater MAG --- Umea2_bin-2809

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Mesorhizobium sp. M0843

ncbi_submitter: Washington State University


ncbi_assembly_name: freshwater MAG --- Loc080925-6m_bin-1001

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Streptomyces sp. SID7814

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Canada

ncbi_organism_name: Escherichia coli DEC3E

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: Xiamen University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: USA: West Virginia

ncbi_organism_name: Orenia metallireducens

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: Microcoleus sp. POL1_C1

ncbi_submitter: Palacky University Olomouc


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: USA: Texas

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Moredun Research Institute


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Houston; TX

ncbi_isolation_source: parent strain RU1 evolved under selective conditions; LB evolved gen 500 Population GS

ncbi_strain_identifiers: RU1 LB11

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_organism_name: Neisseria subflava

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Japan Agency for Marine-Earth Science and technology (JAMSTEC)


ncbi_country: Egypt

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: bioMerieux


ncbi_country: USA: WA

ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Streptomyces sp. NPDC042898

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Holdemanella sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: FNCPS K7

ncbi_submitter: HSE University


ncbi_country: USA: Vershire; Ely Copper Mine

ncbi_isolation_source: sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Corynebacterium kroppenstedtii

ncbi_submitter: OsloMet


ncbi_organism_name: Candidatus Competibacterales bacterium

ncbi_submitter: Freie Universitat Berlin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Competibacterales;x__unclassified Candidatus Competibacterales;s__Candidatus Competibacterales bacterium


ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Daping Hospital, The Army Medical University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_isolate: root of Talipariti tiliaceum

ncbi_organism_name: Streptomyces sp. AA1529

ncbi_strain_identifiers: bgisy054;root of Talipariti tiliaceum

ncbi_submitter: BGI Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: Syntrophobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Birmingham


ncbi_organism_name: uncultured Burkholderiaceae bacterium


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Rickettsia aeschlimannii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Second Institute of Oceanography, Ministry of Natural Resources


ncbi_country: USA: Decatur; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Salinibacter ruber

ncbi_submitter: University of Maryland


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: National Cancer Institute - NIH


ncbi_country: USA: Michigan

ncbi_isolation_source: Residence hot water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_organism_name: Ferriphaselus sp. R-1

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China

ncbi_organism_name: Leisingera caerulea

ncbi_submitter: Ocean University of China


ncbi_organism_name: Escherichia coli KTE223

ncbi_submitter: Broad Institute


ncbi_organism_name: Thalassospira tepidiphila


ncbi_assembly_name: IMG-taxon 2657245724 annotated assembly

ncbi_organism_name: Streptomyces sp. LcepLS

ncbi_strain_identifiers: LcepLS

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wildermuthiibacteriota;s__Candidatus Wildermuthbacteria bacterium RIFCSPHIGHO2_12_FULL_49_13


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodobiaceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UNIVERSITY MEDICAL CENTER UTRECHT


ncbi_organism_name: Vibrio bivalvicida

ncbi_submitter: University of Vienna


ncbi_assembly_level: Chromosome

ncbi_country: Saint Kitts and Nevis

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: INDICASAT AIP


ncbi_country: Singapore

ncbi_isolation_source: not known

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: California; Castaic Lake

ncbi_isolation_source: non-axenic enrichment culture inoculated with lake water

ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Germany: Buehl; compost heap

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. NBC_00091

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: sputum

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: freshwater MAG --- Loc090519-1m_bin-1818

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: uncultured Clostridium sp.


ncbi_assembly_name: Rumen uncultured genome RUG14634

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Gordonibacter pamelaeae

ncbi_submitter: University of Chicago


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_country: Germany: Lower Saxony

ncbi_isolation_source: Pike

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Caecibacter massiliensis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: milk from an udder

ncbi_organism_name: Streptococcus uberis C8329

ncbi_submitter: University of Nottingham


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Victivallis sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Laboratory for Microbiome Sciences  Center for Integrative Medical Sciences, RIKEN


ncbi_assembly_name: IMG-taxon 2654588117 annotated assembly

ncbi_organism_name: Selenomonas sp. WCT3

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Gulf of Mexico

ncbi_isolation_source: sample BD02T64 sea water enriched with oil for 64 days

ncbi_organism_name: Rhodospirillales bacterium 47_12_T64

ncbi_submitter: Lawrence Berkeley National Lab


ncbi_assembly_name: freshwater MAG --- Ja2-D2_bin-0140

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Italy

ncbi_isolation_source: Skin Swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_organism_name: Aneurinibacillus migulanus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Escherichia coli

ncbi_submitter: Singapore General Hospital


ncbi_country: Lebanon

ncbi_organism_name: Brucella sp. CMUL 031

ncbi_strain_identifiers: CMUL 031

ncbi_submitter: LAU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;x__unclassified Brucella;s__Brucella sp. CMUL 031


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: kidney

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Leptolyngbya subtilissima DQ-A4

ncbi_submitter: Institute of Hydrobiology


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_country: Nepal

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium sp. NLR9a

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_isolation_source: feces

ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_assembly_name: IMG-taxon 2651870359 annotated assembly

ncbi_organism_name: Oribacterium sp. WCC10

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA

ncbi_isolation_source: human clinical sample

ncbi_submitter: Texas A&M University


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii 214216

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China: Guangzhou

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangzhou center for disease control and prevention


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Opitutales bacterium UBA7389

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__unclassified Opitutales;s__Opitutales bacterium UBA7389


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: INRAE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_country: Chile

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_country: Pakistan

ncbi_isolation_source: washroom sink in hospital intensive care unit

ncbi_organism_name: Achromobacter aegrifaciens

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Gluconobacter oxydans

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Australia: Newcastle

ncbi_organism_name: Eubacterium sp.


ncbi_organism_name: Streptomyces sp. NPDC002884

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Marinilabiliaceae bacterium

ncbi_submitter: Pau University


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: China

ncbi_isolation_source: Exudate

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of West London


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Penn State


ncbi_country: USA: Chesapeake Bay; Maryland

ncbi_isolation_source: surface seawater

ncbi_organism_name: Pseudoalteromonas sp. SG44-8

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: Australia: Gold Coast; QLD

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Melbourne


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Basel


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Feral swine feces

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Hospital Sirio-Libanes


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: bacterium

ncbi_submitter: The University of Melbourne


ncbi_assembly_name: Salmonella enterica CVM N42235-SQ v1.0

ncbi_country: USA: NM

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: SIP-labeled bacteria involved in mucosal sugar uptake in the mouse colon

ncbi_organism_name: Ruthenibacterium sp.

ncbi_submitter: University of Vienna


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Streptomyces sp. CA-288835

ncbi_submitter: Technical University of Denmark


ncbi_country: Turkey: Mersin

ncbi_isolation_source: Greenhouse

ncbi_organism_name: Pseudomonas carnis

ncbi_submitter: University of Toronto Mississauga


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of South Australia


ncbi_isolation_source: sugar beet rhizosphere

ncbi_organism_name: Planctomyces sp. SH-PL62

ncbi_submitter: NIOO-KNAW


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: USA: Washington

ncbi_isolation_source: Public Health Laboratory

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Texas A&M University - Corpus Christi


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Denver; CO

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Colorado


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Brown University


ncbi_assembly_name: De novo assembly of KCRI isolate RDK01_567B

ncbi_isolation_source: wound swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Cambodia: Phnom Penh

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita university


ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Mycoplasma sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Dysosmobacter welbionis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Proximal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Frisingicoccus sp.

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: India: Kozhikode

ncbi_isolation_source: Salted Mackerel

ncbi_organism_name: Marinococcus halophilus

ncbi_strain_identifiers: KCTC 2843

ncbi_submitter: UC Davis


ncbi_organism_name: Mycoplasma haemofelis str. Langford 1

ncbi_strain_identifiers: Langford 1

ncbi_submitter: Centre for Genomic Research, Institute of Integrative Biology, University of Liverpool

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;s__Mycoplasma haemofelis;x__Mycoplasma haemofelis str. Langford 1

ncbi_type_material_designation: assembly designated as reftype


ncbi_country: Germany

ncbi_isolation_source: flour/flour products

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_isolation_source: ballast tank

ncbi_organism_name: Demequina sp.

ncbi_submitter: Shandong university


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Cutibacterium acnes HL110PA3

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_isolate: Halomonas sp. 59

ncbi_organism_name: Halomonas sp. 59

ncbi_strain_identifiers: Halomonas sp. 59

ncbi_submitter: Station Biologique de Roscoff - Sorbonne Universite/CNRS


ncbi_organism_name: Pelagibacterium halotolerans

ncbi_refseq_category: reference genome

ncbi_submitter: China Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: Russia: Rostov-on-Don

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Research Institute for Plague Control


ncbi_organism_name: Luteimonas sp. J29

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Turicibacter sanguinis

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: EMG


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Azerbaijan: Apsheron Pen.

ncbi_organism_name: Yersinia pestis 1045

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;x__Yersinia pestis 1045


ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_organism_name: Candidatus Scatousia sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;g__Candidatus Scatousia;x__unclassified Candidatus Scatousia;s__Candidatus Scatousia sp.


ncbi_organism_name: Anaerococcus sp. WGS1579

ncbi_submitter: Amager and Hvidovre Hospital


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Pseudoruminococcus massiliensis


ncbi_organism_name: Pseudoduganella sp. LjRoot289

ncbi_submitter: Aarhus University


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Yangzhou University


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Henan Provincial Hospital of Traditional Chinese Medicine


ncbi_submitter: Christian Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_submitter: Institut Pasteur


ncbi_organism_name: Neisseria sp. P0015.S002

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_organism_name: Heyndrickxia coagulans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: long-term freshwater anammox column reactor

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Environmental Preservation Engineering, Civil and Environmental Engineering, Hiroshima University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: bacterium

ncbi_submitter: AAFC


ncbi_country: China: Beijing

ncbi_isolation_source: animal manure

ncbi_organism_name: bacterium D16-76

ncbi_submitter: Chinese Academy of Science


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Acinetobacter pseudolwoffii

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Micromonosporaceae bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Rhodospirillales bacterium 39-66-50


ncbi_organism_name: Streptomyces massasporeus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Cognatishimia sp.

ncbi_submitter: EMG


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Liaocheng University


ncbi_country: South Korea: Goyang

ncbi_isolation_source: gall bladder

ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: Korea Institute of Ocean Science & Technology


ncbi_isolation_source: sour dough

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Brigham Young University


ncbi_country: Nigeria

ncbi_isolation_source: roots from fresh vegetable

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Igbinedion University Okada


ncbi_organism_name: Aquipseudomonas alcaligenes

ncbi_submitter: SC


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Cleveland Clinic


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: NHGRI/NIH


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 217


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_isolation_source: cloacal swab (nestling)

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_country: South Korea

ncbi_organism_name: Vagococcus coleopterorum

ncbi_submitter: Kyung Hee University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China:Sichuan; MianYang

ncbi_isolation_source: liver

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Research Center of Avian Diseases, RCAD


ncbi_country: Germany

ncbi_isolation_source: River

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CAU Kiel


ncbi_organism_name: Klebsiella sp. CB_Kp198

ncbi_submitter: Max Rubner-Institut


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Zetaproteobacteria bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatius Mariprofundia;x__environmental samples;s__uncultured Zetaproteobacteria bacterium


ncbi_country: Morocco: Rabat

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: MedBiotech laboratory, faculty of medicine and pharmacy, rabat/ Mohamed V university rabat


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: China: Guangdong

ncbi_isolation_source: hospital

ncbi_submitter: City university of Hong Kong


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: Infection

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University


ncbi_isolate: Fecal samples

ncbi_isolation_source: Assistance Publique - Hopitaux de Paris

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples

ncbi_submitter: UMR 1137 IAME


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Enterococcus sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: India: Kolkata

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Helicobacter pylori NQ352

ncbi_submitter: MHH Hannover Medical School


ncbi_country: Brazil: Amazon

ncbi_isolation_source: Rectal swab

ncbi_submitter: University of Sao Paulo


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Bacteroidota Order II. bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy: d__Bacteria;p__Bacteroidota;c__;o__unclassified Bacteroidota Order II.;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;o__unclassified Bacteroidota Order II.;s__Bacteroidota Order II. bacterium


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Antarctica: Mackay Glacier regions; Mount George Murray

ncbi_isolation_source: mineral soil

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Monash University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Candidatus Pacebacteria bacterium CG10_big_fil_rev_8_21_14_0_10_36_11


ncbi_country: Australia

ncbi_isolation_source: saliva

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of New South Wales


ncbi_country: South Korea: Pocheon

ncbi_isolation_source: ginseng field

ncbi_organism_name: Panacibacter ginsenosidivorans

ncbi_submitter: Hankyong National University


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_organism_name: Sedimentibacter sp.

ncbi_submitter: Fudan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp.


ncbi_country: Russia: Republic of Buryatia

ncbi_isolation_source: coal

ncbi_organism_name: Thermoanaerobacter sp.

ncbi_submitter: Research Center of Biotechnology


ncbi_organism_name: Fischerella sp. PCC 9339

ncbi_submitter: JGI


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Central Marine Fisheries Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Nevskiales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: USA: Umatilla County; Oregon

ncbi_organism_name: Rathayibacter sp. AY1D2

ncbi_submitter: Oregon State University


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan Hospital of Fudan University


ncbi_organism_name: Phenylobacterium haematophilum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; Guaymas Basin; Black smoker hydrothermal vent

ncbi_isolation_source: marine hydrothermal chimney wall TVG10

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Environmental Microbiology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: China

ncbi_isolation_source: freshwater

ncbi_organism_name: Calothrix sp. FACHB-1219

ncbi_submitter: South China Normal University


ncbi_assembly_name: Rumen uncultured genome RUG10815

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_country: USA: UCLA School of Dentistry

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Pseudoalteromonas fenneropenaei

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Unknown

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: South Africa: Mookgophong

ncbi_isolation_source: fungus comb

ncbi_submitter: University of Copenhagen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis;x__Bacillus subtilis subsp. subtilis str. MP11


ncbi_country: Australia: Davies Reef; Great Barrier Reef

ncbi_isolation_source: sponge tissue; low temperature low CO2

ncbi_submitter: Australian Institute of Marine Science


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sichuan University


ncbi_country: China: Yushu prefecture; Qinghai Province

ncbi_isolation_source: the intestinal contents of Marmot

ncbi_organism_name: Arthrobacter sp. zg-Y919

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Switzerland: Zurich University Hospital

ncbi_isolation_source: ear infection

ncbi_organism_name: Corynebacterium auris

ncbi_submitter: Bielefeld University


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Colombia: Tolima

ncbi_isolation_source: CUNDINAMARCA

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Group of Cytogenetics, Phylogeny and Population Evolution, University of Tolima


ncbi_organism_name: uncultured Mailhella sp.


ncbi_isolation_source: human gut

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Actinomycetaceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: Mexico

ncbi_isolation_source: Clone 2 resistant to the phage variant phiDCL-PA6alpha; parent strain PA14

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: UNAM


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Fort Sam Houston

ncbi_isolation_source: thigh

ncbi_submitter: Miami University


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Nigeria

ncbi_isolation_source: cattle stool (Bos taurus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agoueve


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: France

ncbi_isolation_source: Corse; leaf or steam petiole

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: INRAE


ncbi_organism_name: uncultured Gemmatimonadales bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Shigella sonnei


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tecnologico de Monterrey


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: India: Vellore

ncbi_isolation_source: sputum

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Christian Medical College


ncbi_organism_name: Sphingobacterium multivorum


ncbi_country: USA: California; Eel River; Elder Creek

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Sphingobacteriia bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Brazil

ncbi_strain_identifiers: IBSBF 2819

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas phaseoli;x__Xanthomonas phaseoli pv. manihotis;x__Xanthomonas phaseoli pv. manihotis str. IBSBF 2819


ncbi_organism_name: Bacteroides stercoris


ncbi_organism_name: uncultured Mediterraneibacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Dialister sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: Poland

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: National Institute of Public Health NIH - NRI


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Canada: Guelph

ncbi_isolation_source: paw

ncbi_submitter: University of Guelph


ncbi_country: Japan: Nagano; matsumoto

ncbi_submitter: Shinshu University Graduate School of Medicine


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Hubei

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Mammaliicoccus fleurettii

ncbi_submitter: University of Leeds


ncbi_organism_name: Streptomyces sp. NPDC091204

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Fibrobacterales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: Escherichia coli CVM N36099PS v1.0

ncbi_country: USA

ncbi_isolation_source: Farm

ncbi_strain_identifiers: CVM N36099PS

ncbi_submitter: FDA


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: China: the East China Sea

ncbi_isolation_source: enrichment culture inoculated with surface estuarine sediment

ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Shanghai Jiao Tong University (SJTU)


ncbi_assembly_name: Strain 3-3

ncbi_isolation_source: Subgingival plaque

ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: Melbourne Dental School, University of Melbourne


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Lactiplantibacillus plantarum WCFS1

ncbi_submitter: Wageningen Centre for Food Sciences


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Thailand: Trang

ncbi_isolation_source: urine

ncbi_submitter: Prince of Songkla University


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: isolated from adult of Haemaphysalis hystricis

ncbi_organism_name: Rickettsia japonica

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University


ncbi_country: Brazil: Recife

ncbi_isolation_source: bone

ncbi_submitter: Instituto Aggeu Magalhaes - FIOCRUZ - Brazil


ncbi_country: China: Hangzhou

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: Mexico: Acaxochitlan; State of Hidalgo

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium hidalgonense

ncbi_submitter: Instituo Politecnico Nacional


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Celeribacter naphthalenivorans

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: Portugal

ncbi_isolation_source: Feces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Universidade do Algarve


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Zhejiang

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_country: Lebanon

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Lebanese American University


ncbi_organism_name: Plesiomonas shigelloides

ncbi_submitter: Huzhou CDC


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Bacteroides clarus

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guangdong; Daobaoshan

ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Middle meatus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Queensland


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_organism_name: Lachnospira pectinoschiza

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Ryaniibacteriota;s__Candidatus Ryanbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_43_42


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada

ncbi_isolation_source: brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Norway: Vestfold

ncbi_isolation_source: abscess fluid

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Candidatus Angelobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;g__Candidatus Angelobacter;x__unclassified Candidatus Angelobacter;s__Candidatus Angelobacter sp.


ncbi_country: USA: Arizona

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: fecal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: North Carolina

ncbi_isolation_source: NCSU Equine Educational Unit

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: North Carolina State University


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus HBHO6022

ncbi_submitter: Broad Institute


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Absconditibacteriota;o__Candidatus Absconditabacterales;x__unclassified Candidatus Absconditabacterales;s__Candidatus Absconditabacterales bacterium


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: Canada: Medicine Hat; Alberta

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single-cell amplified by MDA; produced oilfield water

ncbi_organism_name: Smithella sp. D17

ncbi_submitter: Hydrocarbon Metagenomic Project


ncbi_isolation_source: human gut

ncbi_organism_name: Parabacteroides gordonii


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: 97_5 for version 1 of the Alcanivorax sp. 97CO-5 genome

ncbi_country: China: Yellow Sea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Alcanivorax sp. 97CO-5

ncbi_submitter: First Institute of Oceanography, State Oceanic Administration of China


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Bigelow Laboratory For Ocean Sciences


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Armatimonadetes bacterium UBA5377

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__unclassified Armatimonadota;s__Armatimonadetes bacterium UBA5377


ncbi_organism_name: Salmonella sp. ZJHZ20_0011

ncbi_submitter: Zhejiang university


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Streptomyces sp. NPDC014891

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Neptuniibacter pectenicola

ncbi_submitter: University of East Anglia


ncbi_isolate: original strain

ncbi_strain_identifiers: K-12;original strain

ncbi_submitter: National Renewable Energy Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli K-12;x__Escherichia coli str. K-12 substr. MG1655


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universita Politecnica delle Marche


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Ktedonobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Barnesiella intestinihominis


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: EPFL


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; Equitorial atlantic

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Eggerthella lenta


ncbi_organism_name: Sneathia sanguinegens

ncbi_strain_identifiers: CCUG 41628T

ncbi_submitter: MIT


ncbi_organism_name: Bacillus tropicus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Actinomycetota bacterium


ncbi_country: USA: Colorado

ncbi_isolation_source: produced fluids from hydraulically fractured shales DJB-2 day 1480

ncbi_organism_name: Thermotoga sp.

ncbi_submitter: The Ohio State University


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-3695

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: BILS


ncbi_country: USA: Florida

ncbi_isolation_source: midgut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Campylobacter sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Rectinema sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Thalassotalea sp.

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_assembly_name: Rumen uncultured genome RUG728

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Malaysia: Kuala Lumpur; PPUM

ncbi_isolation_source: hospital wastewater

ncbi_organism_name: Staphylococcus sp. SNAZ 59

ncbi_strain_identifiers: SNAZ 59

ncbi_submitter: MJIIT


ncbi_organism_name: Litorivivens sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Canada: Lacombe

ncbi_organism_name: Eggerthellales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- Umea3p1_bin-1264

ncbi_organism_name: uncultured Rhodospirillales bacterium


ncbi_organism_name: Comamonas thiooxydans

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_assembly_name: freshwater MAG --- Umea3p4_bin-0628

ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Halalkalibacterium halodurans

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Halalkalibacterium (ex Joshi et al. 2022);s__Halalkalibacterium halodurans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Halalkalibacterium (ex Joshi et al. 2022);s__Halalkalibacterium halodurans


ncbi_organism_name: Streptomyces sp. NPDC005876

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Sweden: Gaevle

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Uppsala University


ncbi_organism_name: Clostridiales bacterium


ncbi_country: Poland

ncbi_organism_name: Lactococcus lactis

ncbi_strain_identifiers: CIRM-BIA 1216

ncbi_submitter: Brigham Young University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Germany: Roxel

ncbi_isolation_source: compost

ncbi_organism_name: Arthrobacter sp. MYb227

ncbi_submitter: Zoological Institute, Kiel University


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Cleveland Clinic


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Faculty of Science, Masaryk University


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_country: France

ncbi_organism_name: Enterobacter cloacae complex sp. P8BA

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. P8BA


ncbi_country: South Africa: Durban

ncbi_isolation_source: pus swab (trachea)

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of KwaZulu Natal

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: City University of Hong Kong


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Methylovirgula sp.

ncbi_submitter: EPFL


ncbi_assembly_name: Salmonella enterica CVM N43448 v1.0

ncbi_country: USA: CA

ncbi_isolation_source: Chicken Wings

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Thailand: Ubon

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Thermoanaerobaculaceae bacterium


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: USA: Massachusetts; Martha s Vineyard

ncbi_organism_name: Hyphobacterium sp. CCMP332

ncbi_submitter: University of Arkansas


ncbi_country: Spain: Granada

ncbi_isolation_source: Rectal Swab

ncbi_submitter: Hospital Virgen Macarena


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Nocardioides sp. Root79

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: St.Petersburg

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: ARRIAM


ncbi_country: Antarctica: Grovness Peninsula; Larsemann hills

ncbi_isolation_source: small unnamed meltwater lake contaminated with bird feces

ncbi_submitter: Institute of Experimental Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Bangladesh

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium binae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: China: Nanjing

ncbi_isolation_source: laboratory-scale bioreactor denitrification and anammox communities

ncbi_organism_name: Aquabacterium sp.

ncbi_submitter: NanJing University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__unclassified Aquabacterium;s__Aquabacterium sp.


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Helicobacter pylori Hp P-11

ncbi_strain_identifiers: Hp P-11

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: NY

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Seoul Metropolitan Government Research Institute of Public Health and Environment


ncbi_organism_name: uncultured Roseateles sp.


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: lake water

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: freshwater MAG --- Umea1_bin-3330

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospirales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Megamonas hypermegale

ncbi_submitter: EMG


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Shanghai

ncbi_isolation_source: lavage fluid

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: Switzerland: Kanton Zug

ncbi_isolation_source: environmental-WWTP

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_country: United Kingdom

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leeds


ncbi_country: Malaysia

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_isolate: Urine

ncbi_strain_identifiers: STw 38;STp 8;NILS42:D;Oneg:H30;Urine

ncbi_submitter: UMR 1137 IAME


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Puniceicoccaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Germany: Stuttgart

ncbi_isolation_source: mixed minced meat

ncbi_submitter: Robert Koch Institute


ncbi_country: Ireland: Lough Hyne

ncbi_isolation_source: marine sponge

ncbi_organism_name: Pseudovibrio axinellae

ncbi_submitter: University College Cork


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Mogibacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: Quebec City

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_submitter: Chongqing Medical University


ncbi_country: Spain

ncbi_isolation_source: Fecal sample

ncbi_organism_name: Bifidobacterium amazonense

ncbi_submitter: University of Parma


ncbi_country: China:Fujian Provience

ncbi_organism_name: Shewanella yunxiaonensis

ncbi_submitter: Agricultural Bio-resources Research Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: USA

ncbi_isolation_source: hide

ncbi_submitter: Kansas State University


ncbi_organism_name: Enterobacter hormaechei


ncbi_country: China

ncbi_isolation_source: milk powder

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nankai Universigy


ncbi_assembly_name: Xanthomonas fuscans subsp. aurantifolii AM_0519

ncbi_organism_name: Xanthomonas citri pv. aurantifolii

ncbi_submitter: Universidade Federal de Sao Carlos - UFSCar

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. aurantifolii