ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum;sb__Candidatus Phytoplasma australasiaticum subsp. ipomoeae


gtdb_representative: t

gtdb_type_species_of_genus: t

ncbi_assembly_level: Scaffold

ncbi_assembly_name: IMG-taxon 2675903017 annotated assembly

ncbi_genome_representation: full

ncbi_organism_name: Roseospirillum parvum

ncbi_refseq_category: reference genome

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_type_material_designation: assembly from type material


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: Rumen uncultured genome RUG765

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California; Eel River; South Fork Eel River; near Angelo Coast Range Reserve Headquarters

ncbi_isolation_source: river cyanobacterial mat

ncbi_organism_name: Microcoleus sp. PH2017_04_SCI_O_A

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Brazil

ncbi_isolation_source: Vaccine

ncbi_organism_name: Clostridium botulinum D/C

ncbi_submitter: Anses


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Austria

ncbi_isolation_source: Eggs from China

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Iowa State University


ncbi_submitter: University of Sevilla, Spain

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Nitrospinota/Tectimicrobiota group;p__Nitrospinota;x__unclassified Nitrospinota;s__Candidatus Nitrospinota bacterium M3_3B_026


ncbi_country: Zambia

ncbi_isolation_source: intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Streptomyces sp. NPDC000349

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Lysobacter helvus

ncbi_submitter: Japan Advanced Institute of Science and Technology


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Hong Kong: Wong Wan Chau

ncbi_isolation_source: Macroalgal tissue

ncbi_organism_name: Ruegeria arenilitoris

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA

ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Minnesota


ncbi_organism_name: Enterococcus faecalis


ncbi_country: India

ncbi_isolation_source: rumen fluid

ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: CRN 16

ncbi_submitter: CSIR- National Environmental Engineering Research Institute


ncbi_country: China: Mianyang

ncbi_isolation_source: mud

ncbi_organism_name: Ruminococcaceae bacterium UBA5478

ncbi_submitter: University of Queensland


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: CAU


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Sanguibacter sp. 26GB23

ncbi_submitter: Hampton University


ncbi_organism_name: Pseudomonas aeruginosa PA14

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Corynebacterium provencense

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom: Cardiff

ncbi_isolation_source: infant rectum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Netherlands

ncbi_isolation_source: enrichment culture grown in lab-scale EBPR SBR; organism purified/enriched using density-based techniques

ncbi_organism_name: Candidatus Accumulibacter phosphatis

ncbi_submitter: Columbia University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;s__Candidatus Accumulibacter phosphatis


ncbi_assembly_level: Chromosome

ncbi_organism_name: Treponema pallidum subsp. pertenue

ncbi_submitter: Masaryk University


ncbi_country: China: Dalian

ncbi_strain_identifiers: ZC-S1 3rd

ncbi_submitter: Dalian University of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newlands


ncbi_country: French Guiana: Petit Saut

ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Cognatishimia sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Candidatus Chloroheliaceae bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;o__Candidatus Chloroheliales;f__Candidatus Chloroheliaceae;x__unclassified Candidatus Chloroheliaceae;s__Candidatus Chloroheliaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: Oryzifoliimicrobium ureilyticus

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SRCAMB


ncbi_organism_name: Escherichia coli

ncbi_submitter: Paris Saclay University


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: Canada: Ontario

ncbi_isolation_source: Food

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120775


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Zurich


ncbi_submitter: Broad Institute


ncbi_organism_name: Neglectibacter sp. 59

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Abiotrophia defectiva

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Oxford


ncbi_country: Singapore

ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_country: Canada: Pictou County; NS

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Public Health Agency of Canada


ncbi_country: China: Jiangxi province

ncbi_isolation_source: Cerebro-Spinal Fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Halodesulfovibrio sp.

ncbi_submitter: Lomonosov Moscow State University, Faculty of Biology


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Japan

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: China: Malan

ncbi_submitter: BGI-Qingdao


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: STATENS SERUM INSTITUT


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Corallococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: stool sample

ncbi_organism_name: Paraprevotella clara

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Denmark

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Copenhagen


ncbi_country: China: Shanghai

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai municipal center for disease control and prevention


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Russia: Kuril Island

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thermotoga sp. Mc24

ncbi_submitter: University of Alberta


ncbi_country: Sri Lanka:Anuradhapura

ncbi_isolation_source: blood

ncbi_organism_name: Leptospira borgpetersenii

ncbi_submitter: Rajarata University of Sri lanka


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: UZ Gent


ncbi_country: Nigeria

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Cardiff University


ncbi_organism_name: Rarobacter faecitabidus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: Rhode Island

ncbi_isolation_source: Peritoneal fluid

ncbi_organism_name: Capnocytophaga stomatis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: United Kingdom

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_country: India: Surajtal Lake at Lahaul Valley; Himachal Pradesh

ncbi_organism_name: Paenibacillus ihbetae

ncbi_strain_identifiers: IHBB 9852

ncbi_submitter: CSIR-Institute of Himalayan Bioresource Technology


ncbi_country: Austria

ncbi_isolation_source: conveyor belt

ncbi_organism_name: Pseudomonas simiae

ncbi_submitter: FFoQSI GmbH


ncbi_country: China: Hangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Lachnoclostridium sp. An298

ncbi_submitter: Veterinary Research Institute


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Canada

ncbi_isolation_source: oil sands process-affected water

ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: Metabolik Technologies


ncbi_isolation_source: chemical wastewater

ncbi_organism_name: Methylobacterium sp. C1

ncbi_submitter: Soochow University


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: King Abdulaziz University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Ethiopia: Oromia; East Shewa

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Mexico: Morelos

ncbi_isolate: DO

ncbi_isolation_source: adult female whole insect body collected from Opuntia sp.

ncbi_organism_name: Spiroplasma ixodetis

ncbi_strain_identifiers: DO

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_country: China: Shanghai

ncbi_submitter: Huashan hospital


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University hospital Lubeck


ncbi_country: USA: Damariscotta River in front of the Bigelow Laboratory for Ocean Sciences

ncbi_isolation_source: four week timepoint of microcosm treated with photo-oxidized crude oil after inoculation with natural surface seawater; biological replicate 1

ncbi_organism_name: Legionellaceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: United Kingdom: London

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Imperial College London


ncbi_country: China: Nanjing

ncbi_isolation_source: rectal swab

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: Nanjing Municipal Center for Disease Control and Prevention


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Palacky University Olomouc


ncbi_country: South Korea: Gyeonggi-do

ncbi_isolation_source: chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Seoul National University


ncbi_organism_name: Bacillus albus

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Gabon

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay water

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Clemson University


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Kitasatospora sp. NPDC059146

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Desulfocurvus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: University of Ottawa


ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Centers for Disease Control and Prevention - Zoonoses and Select Agent Laboratory


ncbi_organism_name: Alcaligenes faecalis

ncbi_strain_identifiers: SCAU 6

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Escherichia coli

ncbi_submitter: UTsouthwestern Medical Center


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bartonella sp. CL43QHWL

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Nocardiopsis dassonvillei

ncbi_submitter: Swiss Institute of Bioinformatics, Switzerland


ncbi_organism_name: Ralstonia nicotianae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: topsoil

ncbi_organism_name: Firmicutes bacterium UBA3583

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA3583


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: cold seep

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sphingomonas arantia

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Ilumatobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_isolation_source: Human feces

ncbi_submitter: The University of Tokyo


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: RIKEN-BRC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Nanchang; Poyang Lake

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_country: Portugal

ncbi_isolation_source: urine

ncbi_submitter: UCIBIO/REQUIMTE, Faculty of Pharmacy, University of Porto


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: University of Southern California


ncbi_country: China: Shanxi

ncbi_isolation_source: intestinal content

ncbi_organism_name: Listeria ivanovii

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_strain_identifiers: Ngtc CS 4

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: The University of Queensland


ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: EMG


ncbi_isolation_source: The strain was isolated from Guangdong Province; China in 2020-12

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA


ncbi_organism_name: Rhizobium sp. BR 362

ncbi_submitter: Empresa Brasileira de Pesquisa Agropecuaria


ncbi_isolation_source: BLOOD


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S26

ncbi_organism_name: Adlercreutzia sp.

ncbi_submitter: University of Calgary


ncbi_country: Antarctica

ncbi_organism_name: Gillisia sp. CAL575

ncbi_submitter: University of Florence


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Neglectibacter sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Capnocytophaga sp.


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: China: Yongping Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China: Jiuan Polymetallic Mine; Guizhou Province

ncbi_organism_name: Acidobacteriota bacterium


ncbi_country: China: Mianyang

ncbi_isolation_source: mud

ncbi_organism_name: Proteiniphilum sp. UBA5480

ncbi_submitter: University of Queensland


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Germany

ncbi_isolation_source: military dog fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: wound orbital apex

ncbi_organism_name: Staphylococcus sp. HMSC062D04

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: surface water

ncbi_submitter: University of Basel


ncbi_country: South Korea

ncbi_isolation_source: Environment

ncbi_submitter: Seoul National University


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Azonexus sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: cat oral cavity

ncbi_organism_name: Capnocytophaga canis

ncbi_submitter: Osaka Institute of Public Health


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; seawater

ncbi_organism_name: SAR116 cluster bacterium AG-335-N04

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__SAR116 cluster bacterium AG-335-N04


ncbi_organism_name: Cryobacterium psychrophilum

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Belgium: Diepenbeek

ncbi_organism_name: Methylobacterium radiotolerans

ncbi_submitter: Hasselt University


ncbi_isolation_source: lake water

ncbi_organism_name: Chthoniobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Kiel University


ncbi_organism_name: Bacillus cereus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_country: Australia: Australian Institute of Marine Science

ncbi_isolation_source: seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Belgium

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Chengdu

ncbi_isolation_source: Nasal mucus

ncbi_organism_name: Bordetella bronchiseptica

ncbi_submitter: Sichuan agricultural university


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: Czech Republic

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_assembly_name: Rumen uncultured genome RUG804

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Ningbo

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ningbo First Hospital


ncbi_country: Atlantic Ocean

ncbi_isolation_source: skin

ncbi_organism_name: Pseudoalteromonas sp. APC 4017

ncbi_submitter: University College Cork


ncbi_country: Taiwan

ncbi_isolation_source: bloodstream

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: Barn Environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Saskatchewan


ncbi_strain_identifiers: hvKP 366

ncbi_submitter: Guangdong Medical University


ncbi_country: Canada

ncbi_isolation_source: environmental watersal

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_submitter: University of Tuebingen


ncbi_country: Peru

ncbi_isolation_source: feces

ncbi_submitter: Universidade de Sao Paulo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Hunan

ncbi_organism_name: Acinetobacter sp. YH12086

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Sphingobium yanoikuyae


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Viet Nam: Hanoi

ncbi_isolation_source: blood

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: cold seep

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Atribacterota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Atribacterota;x__environmental samples;s__uncultured Atribacterota bacterium


ncbi_country: Italy: Desenzano

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Novartis Vaccines


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sri Lanka

ncbi_isolation_source: ear swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Utrecht University


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Blautia producta

ncbi_submitter: EMG


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Cutibacterium acnes HL096PA1

ncbi_submitter: UCLA David Geffen School of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG12716

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Switzerland

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides sp. OM05-12

ncbi_submitter: BGI


ncbi_organism_name: Rhodococcus opacus

ncbi_submitter: US Geological Survey


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrithrix sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Candidatus Actinomarina sp.

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__unclassified Candidatus Actinomarina;s__Candidatus Actinomarina sp.


ncbi_organism_name: Idiomarina baltica OS145

ncbi_submitter: The Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_organism_name: Enterococcus faecalis


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: Lebanon

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Lebanese American University


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hangzhou

ncbi_isolation_source: Homo sapiens

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Hangzhou Children's Hospital


ncbi_country: Belgium: Botanic Garden Meise

ncbi_isolation_source: leaf nodules

ncbi_organism_name: Candidatus Paraburkholderia kirkii

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_submitter: Faculty of Pharmacy Mahidol University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus cellulosilyticus

ncbi_submitter: Shin's Lab


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Turicibacter sp.


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: Jeonbuk National University


ncbi_submitter: Shandong Academy of Agricultural Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Australia

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: The ithree institute


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Liaoning

ncbi_isolation_source: water

ncbi_organism_name: Pseudomonas parafulva

ncbi_submitter: Liaoning Technical University


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute of Infectious Diseases


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Myxococcales bacterium


ncbi_country: Canada: Ontario

ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2651870362 annotated assembly

ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_assembly_name: Rumen uncultured genome RUG14292

ncbi_organism_name: uncultured Sutterellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: leaf litter

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Dundee Data Analysis Group


ncbi_isolation_source: Vagina

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: UK Health Security Agency


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Antarctica

ncbi_isolation_source: H2-incubated subglacial sediment

ncbi_organism_name: Mariniphaga sp.

ncbi_submitter: Institute of Oceanography, Shanghai Jiao Tong University, China


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Vibrio vulnificus YJ016

ncbi_submitter: NHRI, Taiwan


ncbi_organism_name: Prevotella melaninogenica

ncbi_submitter: EMG


ncbi_country: Viet Nam: Hanoi

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: desert soil

ncbi_organism_name: Rubellimicrobium arenae

ncbi_strain_identifiers: SYSU D00782

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Syntrophorhabdaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Canoe Beach; Nahant; MA

ncbi_organism_name: Neptunomonas phycophila

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: WA

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: University of Washington


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: Rectal swab

ncbi_submitter: Bournemouth University


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Sulfitobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: clinical

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: South China Agricultural University


ncbi_submitter: University of Manitoba


ncbi_isolation_source: blood

ncbi_submitter: Bioplatforms Australia


ncbi_submitter: Broad Institute


ncbi_organism_name: Helicobacter rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: uncultured Roseivirgaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lachnospiraceae bacterium 3-1


ncbi_assembly_name: Isolate 21

ncbi_isolate: Isolate 21

ncbi_isolation_source: blood culture

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Isolate 21

ncbi_submitter: UNIVERSITY OF WARWICK


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Coprococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Switzerland

ncbi_isolation_source: cheese starter culture

ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_submitter: Agroscope


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Affiliated Hospital of Nanchang University, Nanchang University, Nanchang


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Eshraghiella crossota

ncbi_submitter: EMG


ncbi_country: USA: Baltimore

ncbi_isolation_source: Mid-vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Maryland Baltimore


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptococcus sp. 2021WUSS030

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Saccharophagus degradans

ncbi_submitter: Hohai University


ncbi_organism_name: Alistipes putredinis


ncbi_submitter: National Research and Innovation Agency


ncbi_organism_name: uncultured Cytophagia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;x__environmental samples;s__uncultured Cytophagia bacterium


ncbi_organism_name: uncultured Azospirillum sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Indian Institute of Technology Delhi


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Monash University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Holosporales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Washington University in Saint Louis


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Shewanella mangrovisoli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Leptospira borgpetersenii

ncbi_submitter: Centers for Disease Control and Prevention - Zoonoses and Select Agent Laboratory


ncbi_organism_name: uncultured Singulisphaera sp.


ncbi_organism_name: Prochlorococcus sp.

ncbi_submitter: Dekas Lab, Stanford University


ncbi_submitter: ICDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Haemophilus sp. HN_Hi09

ncbi_submitter: Hunan Children's hospital


ncbi_organism_name: Streptomyces rubiginosohelvolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID 4459

ncbi_submitter: University Hospital Regensburg


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Myxococcus xanthus

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Insat

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Qingdao Agricultural University


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_country: USA: Forksville

ncbi_isolation_source: freshwater creek

ncbi_organism_name: Chryseobacterium piperi

ncbi_strain_identifiers: CTM

ncbi_submitter: GCAT-SEEK


ncbi_submitter: WRAIR-Africa


ncbi_country: China: Tengchong

ncbi_isolation_source: hot springs sediment

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Anaerococcus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: human gut

ncbi_organism_name: Tyzzerella sp.

ncbi_submitter: University of Queensland


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: enrichment of activated sludge from Daejeon WWTP

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: KAIST


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Haliea sp.

ncbi_submitter: Handley Lab, University of Auckland


ncbi_isolation_source: not available

ncbi_submitter: WTSI


ncbi_country: Germany: Baiersbronn

ncbi_organism_name: Candidatus Legionella polyplacis

ncbi_strain_identifiers: PsAG

ncbi_submitter: University of South Bohemia in Ceske Budejovice, Faculty of Science


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Acinetobacter guillouiae

ncbi_submitter: BGI-Shenzhen


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Winogradskyella wichelsiae

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_country: Poland

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Streptomyces sp. NBC_01356

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Providencia stuartii

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Rochester; NY; Rochester Institute of Technology campus

ncbi_isolation_source: pond water

ncbi_organism_name: Exiguobacterium sp. RIT452

ncbi_submitter: Rochester Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. RIT452


ncbi_country: French Guiana: Petit Saut

ncbi_isolation_source: termite gut

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Pantoea sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Mahidol University


ncbi_country: Hong Kong

ncbi_organism_name: Laribacter hongkongensis

ncbi_submitter: The University of Hong Kong


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Environmental

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: Oscillibacter sp. KLE 1728

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Stutzerimonas kunmingensis

ncbi_submitter: EMG


ncbi_country: Morocco

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Aarhus University Hospital, Denmark


ncbi_isolation_source: bovine

ncbi_submitter: FDA-CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Uganda


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Egypt

ncbi_isolation_source: cheese (Domiati)

ncbi_organism_name: Lentilactobacillus buchneri

ncbi_strain_identifiers: CIRM-BIA 845

ncbi_submitter: Brigham Young University


ncbi_isolation_source: Human stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Department of Bioscience, Faculty of Applied Bioscience, Tokyo University of Agriculture


ncbi_isolation_source: Caecum

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: New Zealand: Ruakura; Hamilton

ncbi_isolation_source: Bovine rumen

ncbi_organism_name: Butyrivibrio hungatei

ncbi_submitter: AgResearch


ncbi_country: Canada: Rouyn-Noranda

ncbi_isolation_source: sputum

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Ardenticatenales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: Seawater

ncbi_organism_name: Vreelandella venusta

ncbi_submitter: INRAE


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Roseobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Ohio

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Variovorax sp. YR752

ncbi_submitter: Biology Centre CAS


ncbi_isolation_source: bile

ncbi_organism_name: Helicobacter bilis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Tepidiformaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Brazil: Pocos de Caldas

ncbi_isolation_source: soil

ncbi_organism_name: Bradyrhizobium uaiense

ncbi_submitter: Universidade Federal de Lavras


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: BGI


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bacteriovorax stolpii

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: TN

ncbi_isolation_source: ground turkey

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: FDA


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: The University of Queensland


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: CSIR- National Environmental Engineering Research Institute


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yangzhou University


ncbi_country: USA

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Betaproteobacteria bacterium


ncbi_country: Sweden: Vastra Gotaland; Gothenburg

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: TAILORED-Treatment project


ncbi_organism_name: Bacteroides intestinalis


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Gemmiger sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Icahn School of Medicine


ncbi_country: China:Nagqu city; Tibet autonomous region

ncbi_organism_name: Microbacterium wangchenii

ncbi_submitter: Chinese center for disease control and prevention


ncbi_isolation_source: Plant

ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: University of California


ncbi_country: China: Shanghai

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_isolation_source: wound

ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: University of Connecticut Graf Lab


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 184

ncbi_submitter: Oregon State University


ncbi_organism_name: Parabacteroides leei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_country: Germany

ncbi_isolation_source: oral cavity

ncbi_organism_name: Pasteurellaceae bacterium RH1A

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Thioalkalivibrio sp. ALE23

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Sulfitobacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- Loc090116-8m_bin-0893

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus sp. HMSC034A12

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: China: Zhejiang

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: City University of Hong Kong


ncbi_country: USA: KY

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Shigella flexneri K-227

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Candidatus Fervidibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Fervidibacterota;g__Candidatus Fervidibacter;x__unclassified Candidatus Fervidibacter;s__Candidatus Fervidibacter sp.


ncbi_country: USA: TX

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Anaeroglobus sp. AF13-6AC

ncbi_submitter: BGI-Shenzhen


ncbi_country: Turkey

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: ceaca

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: P3 C A35

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_country: Australia: Melbourne

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: China: Chengdu

ncbi_isolation_source: BALs

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: COPD W5c

ncbi_submitter: Chengdu University


ncbi_country: Saudi Arabia: KAUST

ncbi_isolation_source: freshwater anammox upflow column Reactor

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: KAUST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia sp. BIOML-A12

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Switzerland

ncbi_isolation_source: Burn

ncbi_submitter: Inselspital


ncbi_country: Israel: Palmahim disturbance; hydrocarbon seep

ncbi_isolate: Palmahim 1

ncbi_isolation_source: trophosome

ncbi_strain_identifiers: Palmahim 1

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__gamma proteobacterium endosymbiont of Lamellibrachia anaximandri


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: thermophilic anaerobic digestion

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: USA: Michigan

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Tech


ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Faecalibaculum rodentium


ncbi_country: India: Madhya Pradesh; Sehore; Mographool

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella pallens

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: human gut

ncbi_organism_name: Companilactobacillus farciminis

ncbi_submitter: EMG


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_organism_name: Escherichia coli

ncbi_submitter: NTNU


ncbi_country: Chile

ncbi_isolation_source: activated sludge of kraft-pulp mill effluents

ncbi_organism_name: Comamonas sp.

ncbi_submitter: Universidad Tecnologica Metropolitana (UTEM)


ncbi_country: Australia

ncbi_isolation_source: skin ulcer

ncbi_organism_name: Burkholderia pseudomallei NCTC 13179

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter sp. UBA3407

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hormaechei


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Streptomyces vinaceus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Pseudanabaena sp. M125S2SP2A07QC

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huzhou CDC


ncbi_country: USA: IL

ncbi_isolation_source: Unknown food powder

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_country: Germany: Cologne

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; >63 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Sulfurovum sp. UBA7648

ncbi_submitter: University of Queensland


ncbi_isolation_source: surface swab

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Czech Republic: Prague

ncbi_isolation_source: forest soil

ncbi_organism_name: Paenibacillus sp. O199

ncbi_submitter: Institute of Microbiology of the ASCR


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_submitter: China-Japan Friendship Hospital


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: South Korea: Ochang; Chungcheongbuk-do

ncbi_organism_name: Atopobacter sp. AH10

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Leclercia adecarboxylata


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: USA: Bloomington; IN

ncbi_isolation_source: hive

ncbi_organism_name: Bombella apis

ncbi_submitter: Indiana University


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Dorea sp.


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0298

ncbi_submitter: Broad Institute


ncbi_country: USA: Wyoming

ncbi_isolation_source: geothermal hot spring

ncbi_organism_name: Rhodoplanes tepidamans

ncbi_submitter: Bellevue University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Megamonas funiformis

ncbi_submitter: EMG


ncbi_country: China: Zhejiang

ncbi_isolation_source: bile

ncbi_organism_name: Escherichia coli

ncbi_submitter: Xiaoshan No.3 People's Hospital


ncbi_organism_name: Bacteroides intestinalis


ncbi_organism_name: Dysosmobacter sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: sewage

ncbi_organism_name: Acinetobacter sp. YH12201

ncbi_submitter: South China Agricultural University


ncbi_country: China

ncbi_isolation_source: Bloodstream

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The 6th Affiliated Hospital of Shenzhen University Health Center


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_organism_name: Paenibacillus roseopurpureus

ncbi_submitter: Incheon National University


ncbi_country: China: Binzhou City; Shandong Province

ncbi_isolation_source: activated sludge from saponification wastewater treatment plant

ncbi_organism_name: Brevundimonas diminuta

ncbi_submitter: University of Jinan


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Tibet

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces agglomeratus


ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudomonas frederiksbergensis

ncbi_submitter: Chinese Academy of Sciences


ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Tissierellia bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Canada: Quebec

ncbi_isolation_source: combination of 24 samples (8 from lake Croche; 8 from Montjoie and 8 from Simoncouche) collected from 2013 through 2014

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Joint Genome Institute


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Alistipes finegoldii


ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Alistipes communis


ncbi_organism_name: Geodermatophilus sp. CPCC 205761

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: Pseudoalteromonas rhizosphaerae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Nevada; Mojave Desert

ncbi_isolate: MOJ bin16

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: MOJ bin16

ncbi_submitter: Monash University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Pseudaeromonas aegiceratis

ncbi_submitter: Shenzhen Institute of Guangdong Ocean University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Teagasc


ncbi_organism_name: Photobacterium nomapromontoriensis

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Agrobacterium sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Salmonella sp. NW1166

ncbi_submitter: Sichuan University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: bacterium

ncbi_submitter: Inha University


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: lake water

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_organism_name: Bacillus cereus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Shaanxi Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: IHU - Mediterranee Infection


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: concordia university


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture


ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Trento; Comano Thermal Spring

ncbi_isolation_source: alpine spring water

ncbi_submitter: University of Trento


ncbi_country: Poland: Warszawa

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: National Medicines Institute


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Naumannella halotolerans

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Saudi Arabia

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_assembly_name: freshwater MAG --- Umea2p2_bin-1282

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Pittsburgh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh


ncbi_country: Japan

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Nagoya University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Caldisericota bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_organism_name: Collinsella tanakaei

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_assembly_name: Rumen uncultured genome RUG12548

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: South Korea: Shinan

ncbi_isolation_source: solar salt

ncbi_organism_name: Bacillus sp. HMF5848

ncbi_submitter: Hankuk University of Foreign Studies

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. HMF5848


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus intermedius

ncbi_submitter: Utrecht University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: swine feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Division of Biomedical Food Research, National Institute of Health Sciences, NIHS


ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Flavobacteriales bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: Throat swab 35

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Jinan University


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Aerococcus sanguinicola

ncbi_submitter: Loyola University Chicago


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0036

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Beijing

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Thermotogales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Muenster University Hospital


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured Polynucleobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Spain

ncbi_isolation_source: Culture

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_organism_name: Candidatus Enterocola sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Enterocola;x__unclassified Candidatus Enterocola;s__Candidatus Enterocola sp.


ncbi_country: USA

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_country: Canada: Guelph

ncbi_isolation_source: Fresh seeds

ncbi_organism_name: Pediococcus sp. EKM201D

ncbi_submitter: University of Guelph


ncbi_country: China: Sichuan

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_assembly_name: freshwater MAG --- KR2_bin-0465

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Gammaproteobacteria bacterium UBA7803

ncbi_submitter: University of Queensland


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: General Hospital


ncbi_country: USA: NY

ncbi_isolation_source: Intestine


ncbi_isolation_source: gut

ncbi_organism_name: Clostridiales bacterium


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: Norway: Bergen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Haukeland University Hospital


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_country: Australia: Kimberley

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Rhodococcus sp. ZPP

ncbi_strain_identifiers: ZPP

ncbi_submitter: Fudan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. ZPP


ncbi_country: Czech Republic: Jachymov (Joachimstahl)

ncbi_isolation_source: mineral water

ncbi_organism_name: Sphingomonas sp. J315

ncbi_submitter: University of Chemistry and Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter radioresistens


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of South Africa


ncbi_country: Malaysia

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Paratractidigestivibacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: France

ncbi_organism_name: Mycobacterium canetti

ncbi_submitter: University of Sao Paulo


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: China

ncbi_isolation_source: North Atlantic

ncbi_organism_name: Allomuricauda sp. SP22

ncbi_submitter: Shantou University


ncbi_country: USA: Ohio

ncbi_isolation_source: Insect gut

ncbi_organism_name: Aequitasia blattaphilus

ncbi_submitter: The Ohio State University


ncbi_organism_name: Schaalia turicensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: China: Nanjing

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Jiangsu Provincial Center for Disease Prevention and Control,China


ncbi_country: France: Strasbourg; France

ncbi_organism_name: Corynebacterium durum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Atribacteria bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Clostridium saudiense

ncbi_submitter: EMG


ncbi_country: Indonesia: West Timor

ncbi_isolation_source: soil under mahogany trees

ncbi_organism_name: Dietzia timorensis

ncbi_submitter: Peking University


ncbi_organism_name: Eggerthellaceae bacterium


ncbi_country: Canada: British Columbia

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: USA

ncbi_isolation_source: human skin

ncbi_organism_name: Finegoldia sp.

ncbi_submitter: NHGRI/NIH


ncbi_country: Germany

ncbi_isolation_source: groin

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Candidatus Scatosoma sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Scatosoma;x__unclassified Candidatus Scatosoma;s__Candidatus Scatosoma sp.


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Finland

ncbi_organism_name: Desulfotruncus alcoholivorax DSM 16058


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Tissierellaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Toho University


ncbi_country: China: rice field

ncbi_isolation_source: soil biofilm

ncbi_organism_name: Flavobacterium johnsoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Coxiella burnetii

ncbi_submitter: IHU mediterranee infection


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Padova


ncbi_country: Ghana: Accra

ncbi_isolation_source: hospital

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Shanghai Ocean University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: LM

ncbi_submitter: Beijing macro&micro-test Bio-Tech Co.Ltd


ncbi_country: Sweden: Lund

ncbi_isolation_source: throat

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Italy

ncbi_isolation_source: Vaginal Swab

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Parma


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Wageningen University


ncbi_country: Ghana

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Cardiff University


ncbi_country: USA: Pacific Northwest

ncbi_isolation_source: blood from patient with bacteremia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: USA: Chicago

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: EMG


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: University of Leicester


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0188R

ncbi_submitter: Broad Institute


ncbi_submitter: University of Florida


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Salmonella sp. CQ22WZ0200SAL

ncbi_submitter: Wanzhou CDC


ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Saari 2

ncbi_submitter: University of Helsinki


ncbi_country: Italy: Trento

ncbi_submitter: University of Trento


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_organism_name: Alistipes inops

ncbi_submitter: Washington University School of Medicine


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Fusobacteriaceae bacterium

ncbi_submitter: Sichuan University


ncbi_country: France: Le Blanc

ncbi_isolation_source: Rotting Pear

ncbi_organism_name: Stenotrophomonas indicatrix


ncbi_assembly_name: Rumen uncultured genome RUG192

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Changchun

ncbi_isolation_source: lung

ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: Jilin Agricultural University


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_organism_name: Streptomyces wuyuanensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Sweden

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis BTB04-011


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Shigella sonnei

ncbi_submitter: Macalester College


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: hospital wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: Spain

ncbi_isolation_source: Hospital Vall d Hebron (Barcelona)

ncbi_organism_name: Serratia marcescens

ncbi_submitter: CNAG-CRG


ncbi_organism_name: Jatrophihabitans sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Arenimonas sp.

ncbi_submitter: Monash University


ncbi_country: USA: California; Pasadena; JPL; Building 179

ncbi_isolation_source: cleanroom floor

ncbi_organism_name: Cytobacillus oceanisediminis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Poland: Warszawa

ncbi_isolation_source: pus

ncbi_organism_name: Pseudomonas sp. NMI1173_11


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Run Run Shaw Hospital,School of Medicine,Zhejiang University


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hiduddify


ncbi_organism_name: Rhodobacter capsulatus Y262

ncbi_submitter: University of British Columbia


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O26:H11;x__Escherichia coli O26:H11 str. 2010EL-1699


ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Neisseria lactamica

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Comamonadaceae bacterium UBA4184

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nitriliruptorales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Stenotrophomonas sp. GD03819

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Magnetovibrio sp.


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 14 after weanning

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_strain_identifiers: ATCC BAA-664

ncbi_submitter: Joint Research Centre, European Commission

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup;x__Salmonella enterica subsp. enterica serovar Braenderup str. ATCC BAA-664


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_country: USA: NW Bakersfield; CA; Township 29S Range 26E Section 8

ncbi_organism_name: Spiroplasma citri

ncbi_submitter: USDA, ARS


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Leptospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: China: Qinghai; Keluke Lake

ncbi_isolation_source: sediments

ncbi_organism_name: Oligoflexia bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Arsenophonus nasoniae

ncbi_submitter: University of Liverpool


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Roseomonas sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Enterobacter cancerogenus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Kluyvera intermedia

ncbi_submitter: University of British Columbia


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: EPFL


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 505

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universiti Putra Malaysia


ncbi_submitter: Universidad Complutense de Madrid


ncbi_organism_name: Streptomyces sp. c-19

ncbi_submitter: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences


ncbi_organism_name: Gallintestinimicrobium sp.


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Xinjiang Agriculture University