ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


gtdb_representative: f

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Centre de Bioinformatique de Bordeaux


ncbi_organism_name: Roseobacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: Hyphomonadaceae bacterium


ncbi_assembly_level: Scaffold

ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Bacteriovoracaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Bacteroides stercoris


ncbi_organism_name: Eggerthellaceae bacterium


ncbi_organism_name: uncultured Micavibrio sp.


ncbi_submitter: ProteonPharmaceuticals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: USDA 277

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Third People's Hospital of Shenzhen


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: USA: Danvile; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Georgia Tech


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute for Public Health and the Environment


ncbi_assembly_level: Complete Genome

ncbi_submitter: Swiss Institute of Bioinformatics - Vital-IT group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus ST228


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay site C

ncbi_isolation_source: Beach sand

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- MJ130617B_bin-304

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: marine metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: Genome assembly for Pedobacter sp. R20-19

ncbi_country: USA: Salladasburg; PA

ncbi_isolation_source: Freshwater creek

ncbi_organism_name: Pedobacter sp. R20-19

ncbi_submitter: GCAT Seek


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: University of Montreal


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Guangzhou Institute of Respiratory Health, First Affiliated Hospital of Guangzhou Medical University


ncbi_refseq_category: reference genome

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Chesias legatella


ncbi_country: China: Guangzhou

ncbi_submitter: South China Agricultural University


ncbi_country: China

ncbi_submitter: Yangzhou university


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Varibaculum cambriense


ncbi_country: France

ncbi_organism_name: Bifidobacterium animalis subsp. animalis

ncbi_strain_identifiers: CNCM I-4602

ncbi_submitter: University College Cork


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: NC

ncbi_isolation_source: Irrigation water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: TU Wien


ncbi_country: USA

ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Michigan State University


ncbi_organism_name: Candidatus Puniceispirillum sp.

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;g__Candidatus Puniceispirillum;x__unclassified Candidatus Puniceispirillum;s__Candidatus Puniceispirillum sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Fructilactobacillus sanfranciscensis TMW 1.1304

ncbi_submitter: Lehrstuhl fuer technische Mikrobiologie, Technische Universitaet Muenchen


ncbi_country: Slovenia: Marine Biology Station Piran

ncbi_organism_name: marine group bacterium Sva0996 bin134

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Candidatus Hopanoidivoransaceae;x__unclassified Candidatus Hopanoidivoransaceae;s__marine group bacterium Sva0996 bin134


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M051S1

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMBL-EBI


ncbi_country: Japan: Okinawa

ncbi_isolation_source: Stomach biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_country: South Korea: Suwon

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. R302

ncbi_submitter: Kyonggi University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universita' degli Studi di Milano


ncbi_country: China: Chifeng City; Inner Mongolia Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: SCAU


ncbi_country: Russia: Dagestan

ncbi_isolation_source: fermented milk

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: India: Chora Island

ncbi_isolation_source: marine sediment

ncbi_organism_name: Microbacterium enclense

ncbi_submitter: CSIR-National Chemical Laboratory

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: metheanogenic bioreactor

ncbi_organism_name: Levilinea sp.

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Brazil: Roraima

ncbi_submitter: Oswaldo Cruz Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Ruminococcus sp. CAG:330

ncbi_submitter: DTU


ncbi_submitter: Hackensack-Meridian Health Center for Discovery and Innovation


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0131

ncbi_submitter: Broad Institute


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: BGI-Shenzhen


ncbi_submitter: MRSN BI Team


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: National Cancer Institute - NIH


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. MPR-R2A3

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_country: China: Zhejiang

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Germany: Freising

ncbi_isolation_source: Lupin moromi fermentation

ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: France

ncbi_isolation_source: blood from patient with bloodstream infection

ncbi_organism_name: Staphylococcus aureus S94

ncbi_submitter: Geneva University Hospitals, Genomic Research Laboratory.


ncbi_organism_name: Sphaerisporangium sp. NPDC049002

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with avicel

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Turkey

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Roseburia sp.

ncbi_submitter: AAFC


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Holosporaceae bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei


ncbi_country: South Korea: Jeollanam-do

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sanigen


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Gallionellaceae bacterium

ncbi_submitter: Northeastern University


ncbi_country: Ireland

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: University College Cork


ncbi_country: Brazil: Sao Paulo State

ncbi_isolation_source: Trachymyrmex fungus garden

ncbi_organism_name: Acinetobacter sp. Tr-809

ncbi_submitter: UW-Madison


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cepheid


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Shanxi Eye Hospital


ncbi_country: USA: California; Modesto

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Lichuan

ncbi_organism_name: Levilactobacillus tujiorum

ncbi_submitter: Hubei University of Arts and Science


ncbi_country: Germany: Cologne

ncbi_isolation_source: abdomen

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: China: Weihai

ncbi_organism_name: Aestuariirhabdus haliotis

ncbi_submitter: Shandong University


ncbi_country: Sweden

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: United Kingdom: London

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Imperial College London


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Coprobacillus cateniformis

ncbi_submitter: EMG


ncbi_country: France: Paris

ncbi_organism_name: Escherichia coli

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Estonia

ncbi_isolation_source: milk

ncbi_submitter: University of Tartu


ncbi_organism_name: Neisseria bergeri

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis NM271

ncbi_submitter: IGS


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Azospirillum sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EBI


ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: China: Henan

ncbi_isolation_source: liver

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA: Howard Bay; Upper Klamath Lake; Oregon

ncbi_isolation_source: freshwater lake cyanobacterial bloom; sample filtered onto 1.2 um poresize filter

ncbi_organism_name: Acidovorax sp.

ncbi_submitter: Oregon State University


ncbi_isolation_source: gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Delftia tsuruhatensis

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: Bacteroides xylanisolvens SD CC 2a

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides xylanisolvens;x__Bacteroides xylanisolvens SD CC 2a


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Queensland


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: Marinospirillum sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_assembly_level: Chromosome

ncbi_country: Poland

ncbi_isolation_source: pork meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Warsaw


ncbi_organism_name: uncultured Coriobacteriia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: France: APHM

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: IHU AIX MARSEILLE UNIVERSITY


ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Bifidobacterium angulatum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Singapore

ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Aestuariivita sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_country: USA

ncbi_isolation_source: Respiratory


ncbi_country: Australia

ncbi_isolation_source: Wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Madurai Kamaraj University


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli

ncbi_submitter: Medical University of Vienna


ncbi_organism_name: Roseburia sp. CAG:303

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: Oregon

ncbi_isolation_source: cane gall

ncbi_organism_name: Rhizobium sp. VS19-DR104.2

ncbi_submitter: Oregon State University


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: University of Washington


ncbi_isolation_source: Caecum

ncbi_organism_name: Leuconostoc pseudomesenteroides

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_submitter: TIGR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor;x__Vibrio cholerae O1 biovar El Tor str. N16961


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Russia: South Ural

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for Cellular and Intracellular Symbiosis


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: Rothia mucilaginosa


ncbi_country: Colombia

ncbi_isolation_source: Bodily fluid

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: New York Medical College


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: stanford university school of medicine


ncbi_submitter: Centre for Food Safety


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: University of Chicago


ncbi_organism_name: Kineococcus xinjiangensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Ontario

ncbi_organism_name: Neisseria meningitidis Nm2732

ncbi_submitter: University of Toronto


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Steroidobacteraceae bacterium


ncbi_organism_name: Yoonia sp.

ncbi_submitter: University of Southern California


ncbi_country: Chile

ncbi_isolation_source: kelp gull (Larus dominicanus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Gallionella sp.

ncbi_submitter: Radboud University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: southern Arizona

ncbi_isolation_source: soil

ncbi_organism_name: Lysinibacillus capsici

ncbi_submitter: NCAUR-ARS-USDA


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: concordia university


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Serratia marcescens

ncbi_submitter: CSIR-IIIM


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Navamindradhiraj University


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 1 / A; 5m depth; 0.2 filter

ncbi_organism_name: Omnitrophica WOR_2 bacterium GWA2_47_8

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Omnitrophica WOR_2 bacterium GWA2_47_8


ncbi_country: Pacific Ocean: Lau Basin

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: EMG


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: China: Dongying

ncbi_isolation_source: Shengli oilfield at Shandong province

ncbi_organism_name: Porphyrobacter sp.

ncbi_submitter: East China University of Science and Technology


ncbi_country: Czech Republic

ncbi_isolation_source: blood

ncbi_organism_name: Corynebacterium aquatimens

ncbi_strain_identifiers: CNCTC

ncbi_submitter: NIPH, Prague


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Fidelibacterota bacterium UBA2997

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__unclassified Fidelibacterota;s__Fidelibacterota bacterium UBA2997


ncbi_organism_name: Dissulfuribacterales bacterium

ncbi_submitter: Centro Nacional de Biotecnologia


ncbi_assembly_name: Thermoanaerobacter

ncbi_isolation_source: formation water extracted 1960m underground from a high temperature (102C) petroleum reservoir at Gippsland Basin; Australia

ncbi_organism_name: Thermoanaerobacter sp. A7A

ncbi_submitter: CSIRO Animal, Food and Health Sciences


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: the seqafrica consortium


ncbi_country: USA

ncbi_organism_name: Xanthomonas campestris pv. barbareae

ncbi_strain_identifiers: NCPPB 983

ncbi_submitter: University of Exeter


ncbi_country: USA: San Francisco; CA

ncbi_organism_name: Bartonella koehlerae C-29

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Bartonellaceae;g__Bartonella;s__Bartonella koehlerae;sb__Bartonella koehlerae subsp. koehlerae;x__Bartonella koehlerae C-29


ncbi_organism_name: Pseudomonas lurida

ncbi_submitter: Tecnologico de Monterrey


ncbi_country: Atlantic Ocean

ncbi_isolation_source: North Atlantic Ocean

ncbi_organism_name: bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O111:NM;x__Escherichia coli O111:NM str. 2010C-4622


ncbi_isolation_source: Caecum

ncbi_organism_name: Parabacteroides goldsteinii


ncbi_submitter: University of Pretoria


ncbi_country: South Korea

ncbi_isolation_source: Dori

ncbi_organism_name: Sphingomonas flavescens

ncbi_submitter: Sangji University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Acinetobacter sp. CAG:196

ncbi_submitter: DTU


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Sphingobium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 1-5 micron fraction

ncbi_organism_name: Vibrio cyclitrophicus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Sweden: Pitea

ncbi_isolation_source: water from a biopurification tank of a wood processing plant

ncbi_organism_name: Legionella norrlandica

ncbi_strain_identifiers: LEGN

ncbi_submitter: public health agency of sweden


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Segatella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


gtdb_type_species_of_genus: t

ncbi_isolation_source: feces

ncbi_organism_name: Muricoprocola aceti

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_country: USA: North Carolina

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis blood culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: LSHTM


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: Inner Mongolia Potato Engineering & Technology Research Center


ncbi_organism_name: Sediminibacterium sp.


ncbi_organism_name: Mycoplasmatota bacterium WC30

ncbi_submitter: Institute of oceanology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__unclassified Mycoplasmatota;s__Mycoplasmatota bacterium WC30


ncbi_isolate: SPRUCE 333

ncbi_organism_name: Smithella sp.

ncbi_strain_identifiers: SPRUCE 333

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Lutibacter sp.


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: UFMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Psychrobacter piscatorii

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Xanthobacter tagetidis

ncbi_submitter: Harvard Medical School


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_organism_name: Salmonella sp. NW512

ncbi_submitter: Sichuan University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Ruthenibacterium sp.


ncbi_submitter: University of Antwerp


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SBM Research Institute of Rospotrebnadzor


ncbi_organism_name: Plesiomonas shigelloides


ncbi_organism_name: Plesiomonas sp.


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Streptomyces plicatus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_isolation_source: soil

ncbi_organism_name: Actinobacteria bacterium UBA5176

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__unclassified Actinomycetota;s__Actinobacteria bacterium UBA5176


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: USA: Massachusetts

ncbi_isolation_source: filtered seawater (1um filter)

ncbi_organism_name: Vibrio rumoiensis 1S-45

ncbi_submitter: MIT


ncbi_country: Netherlands

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Wageningen Plant Research


ncbi_organism_name: Bosea sp. (in: a-proteobacteria)

ncbi_submitter: University of Duisburg Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. (in: a-proteobacteria)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_isolation_source: seawater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Ocean university of China


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis NM3081

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: CO

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: Colombia

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Rochester


ncbi_country: Canada

ncbi_isolation_source: Mollusk

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Alteromonas sp. M12

ncbi_submitter: Ocean University of China


ncbi_country: Hungary

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Yale School of Public Health


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Gallionella sp.

ncbi_submitter: EPFL


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert sheltered soil

ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Gemmiger sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_country: Canada: Eel Lake; Yarmouth County; Nova Scotia

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio alginolyticus


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: McGill University


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W70659

ncbi_submitter: Broad Institute


ncbi_assembly_name: freshwater MAG --- MJ120924B_bin-245

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: Norway: Aas

ncbi_isolation_source: commercial starter culture for fermented sausage

ncbi_submitter: Nofima

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Latilactobacillus;s__Latilactobacillus sakei;sb__Latilactobacillus sakei subsp. sakei;x__Latilactobacillus sakei subsp. sakei LS25


ncbi_country: Antarctica: Taylor Valley; Canada Glacier

ncbi_isolation_source: sediment from cryoconite holes

ncbi_organism_name: Pseudanabaena sp. CAN_BIN31

ncbi_submitter: University of Colorado at Boulder


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: Conjunctiva

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of New South Wales


ncbi_organism_name: Paenibacillus koleovorans NBRC 103111

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Pakistan: Punjab

ncbi_isolation_source: infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_country: China

ncbi_isolation_source: food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_country: United Kingdom: Sparsholt; Hampshire

ncbi_isolation_source: porcine fecal sample

ncbi_organism_name: Comamonas sp.

ncbi_submitter: Quadram Institute BioScience


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: duck cloacal

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan Agricultural University


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: lake water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;x__unclassified Spiroplasma;s__Spiroplasma endosymbiont of Lasioglossum malachurum


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Sweden: Jonkoping

ncbi_isolation_source: Human blood

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: TAILORED-Treatment project


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_submitter: University College Dublin


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Nitrobacter winogradskyi

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_isolation_source: environmental watersal

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_organism_name: Novosphingobium sediminicola

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Desulfovibrio desulfuricans

ncbi_submitter: University of Waterloo


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Rhodobacter sp.

ncbi_submitter: Universite de Montreal


ncbi_country: Japan

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Yonsei University College of Medicine


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Hoylesella pleuritidis


ncbi_isolation_source: human skin

ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: NIH/NHGRI


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolate: Staphylococcus sp. 8AQ

ncbi_organism_name: Staphylococcus sp. 8AQ

ncbi_strain_identifiers: Staphylococcus sp. 8AQ

ncbi_submitter: Elham Karimi


ncbi_country: Thailand: Ubon

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Oxalobacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Switzerland

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_assembly_name: freshwater MAG --- Ja1-D2_bin-2252

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_organism_name: SAR116 cluster bacterium

ncbi_submitter: Tara Oceans Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__SAR116 cluster bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Trivandrum

ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: CMC, Vellore


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: University of Chicago


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Mariner hydrothermal plume 25m

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_submitter: NTNU


ncbi_assembly_name: CLC assembled contigs

ncbi_country: Saudi Arabia

ncbi_isolation_source: sea water

ncbi_organism_name: Candidatus Pelagibacter communis

ncbi_strain_identifiers: SCGC AAA795-D22

ncbi_submitter: UNIVERSITY OF CALIFORNIA - SAN DIEGO

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;s__Candidatus Pelagibacter communis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;s__Candidatus Pelagibacter communis


ncbi_country: Russia: Dagestan

ncbi_isolation_source: fermented milk

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Burkina Faso

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces sp. NBC_00341

ncbi_submitter: Technical University of Denmark


ncbi_country: Belgium: Wallonia

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liege


ncbi_organism_name: Segatella salivae


ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: INRAE


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Russia: Kazan

ncbi_isolation_source: nasal swab

ncbi_submitter: Kazan Research Institute of Epidemiology and Microbiology


ncbi_organism_name: uncultured Schwartzia sp.


ncbi_country: USA: OK

ncbi_isolation_source: feces (Sus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Citrobacter braakii

ncbi_strain_identifiers: Gar NS 24

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: CDC stock culture

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: uncultured Nitrospira sp.

ncbi_submitter: Lund University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Longnan; Gansu Province

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Bacillus halotolerans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_country: South Korea

ncbi_isolation_source: lake sediment

ncbi_organism_name: Nocardioides ungokensis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: uncultured Solibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Austria: Vienna

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: Noosa River

ncbi_organism_name: Chloroflexota bacterium


ncbi_country: Germany

ncbi_isolation_source: lupine-based moromi fermentation

ncbi_organism_name: Chromohalobacter canadensis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: sputum

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Helicobacter trogontum

ncbi_submitter: Bacteriology II, National Institute of Infectious Diseases


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_assembly_name: IMG-taxon 2617270790 annotated assembly

ncbi_organism_name: Pseudomonas chlororaphis

ncbi_strain_identifiers: ATCC 9446

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Castellaniella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: doe


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: CA

ncbi_isolation_source: white peach

ncbi_organism_name: Listeria monocytogenes


ncbi_country: China: Beijing

ncbi_organism_name: Nocardia farcinica

ncbi_submitter: Chinese PLA Center for Disease Control and Prevention


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: United Kingdom:High Wycombe

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Priestia flexa

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: China: Guangdong; Qingyuan

ncbi_isolation_source: water

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: Faecalitalea cylindroides

ncbi_submitter: EMG


ncbi_country: Russia

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Chile: Del Maule Region

ncbi_isolation_source: Isolated from bone tissue of a 71 years old male

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: OXA-LEB

ncbi_submitter: LAU


ncbi_country: South Korea:Ulleung province

ncbi_isolation_source: soil of Dokdo; rhizosphere of Elymus tsukushiensis

ncbi_organism_name: Microbacterium elymi

ncbi_submitter: Nakdonggang National Institute of Biological Resources


ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Oxalobacter formigenes

ncbi_submitter: addis ababa university


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Neisseriaceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: USA: Nantahala National Forest; North Carolina

ncbi_isolation_source: silty top soil from campfire

ncbi_organism_name: Microbacterium sp. MEC084

ncbi_submitter: University of Georgia


ncbi_country: New Zealand

ncbi_isolation_source: plant

ncbi_organism_name: Pseudomonas syringae pv. cerasicola

ncbi_submitter: New Zealand Institute for Plant & Food research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. cerasicola


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli B29-1

ncbi_submitter: IGS


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_country: South Africa: Durban Chest Clinic

ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0118

ncbi_submitter: Broad Institute


ncbi_organism_name: Hoylesella shahii


ncbi_isolation_source: secretions

ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_assembly_name: GEN_BGC Atlantic-Pacific 2011 bin.5 MAG

ncbi_isolate: bin.5 MAG

ncbi_isolation_source: North Pacific

ncbi_organism_name: Porticoccaceae bacterium UBA1117

ncbi_strain_identifiers: bin.5 MAG

ncbi_submitter: IDAEA-CSIC


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Nitratireductor sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Japan

ncbi_isolation_source: fecal material [ENVO:00002004]

ncbi_organism_name: Bifidobacterium catenulatum subsp. kashiwanohense

ncbi_submitter: Yakult Central Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Kunming

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Second Affliated Hospital of Kunming Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Brazil: Belo Horizonte

ncbi_isolation_source: feces

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Federal University of Triangulo Mineiro


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Nitrospina sp.

ncbi_submitter: EMG


ncbi_country: USA: Georgia

ncbi_isolation_source: Chicken processing plant

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Texas Tech University


ncbi_organism_name: Schaalia odontolytica


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Candidatus Planktophila sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__environmental samples;s__uncultured Candidatus Planktophila sp.


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Azospirillum sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: uncultured Porphyromonas sp.


ncbi_organism_name: Desulfovibrio piger

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii 1178044

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Dialister sp.


ncbi_organism_name: Pseudomonas sp. HT11

ncbi_submitter: Chongqing Academy of Agricultural Sciences


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR324 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;x__environmental samples;s__uncultured SAR324 cluster bacterium


ncbi_country: Germany

ncbi_isolation_source: Pork

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: CVUAS 11497

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shanxi

ncbi_isolation_source: thermal spring water

ncbi_organism_name: Paracnuella aquatica

ncbi_submitter: Shandong University


ncbi_organism_name: Pseudocitrobacter faecalis

ncbi_submitter: Cardiff University School of Medicine


ncbi_isolation_source: hide

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kansas State University


ncbi_organism_name: Denitrificimonas caeni

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Atlantibacter hermannii

ncbi_submitter: Institut Pasteur


ncbi_organism_name: uncultured Desulfobacterales bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Spirillospora sp. NPDC000708

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: National Chung Cheng University


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Herring

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Institute of Experimental Medicine


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: Washington; Hood Canal

ncbi_isolation_source: Shellfish Hatchery

ncbi_organism_name: Vibrio coralliilyticus

ncbi_submitter: Oregon State University


ncbi_country: China: Beijing

ncbi_isolation_source: infected leaves

ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Beijing Academy of Agriculture and Forestry Sciences


ncbi_organism_name: Flavobacterium facile

ncbi_submitter: Universidad Andres Bello


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_isolate: AOP42_A2_surf _bin _11

ncbi_organism_name: Psychrobacter sp.

ncbi_strain_identifiers: AOP42_A2_surf _bin _11

ncbi_submitter: Genoscope


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan


ncbi_country: Spain: Madrid

ncbi_isolation_source: Bronchial aspirate

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Thailand: Thung Chang

ncbi_isolation_source: termite gut

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-212

ncbi_submitter: Broad Institute


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_organism_name: Pasteurella oralis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Chlamydia crocodili

ncbi_submitter: Mahidol University


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: phycosphere of toxic marne Dinoflagellate

ncbi_submitter: Zhejiang Ocean University


ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;x__environmental samples;s__uncultured Cytophagales bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Toronto


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Vulcanococcus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Pedomonas sp. V897

ncbi_submitter: Shanxi Medical University


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_2 depth 21-24 cm

ncbi_organism_name: Deltaproteobacteria bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acidobacteriota bacterium


ncbi_organism_name: Tannerellaceae bacterium

ncbi_submitter: Sichuan University


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Streptomyces sp. NPDC060333

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptomyces sp. NPDC088674


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Spongiibacteraceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: Jiangsu

ncbi_isolation_source: fecal sample

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: gut

ncbi_organism_name: Porphyromonadaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Moheibacter sp.

ncbi_submitter: University of Waterloo


ncbi_country: USA: Texas

ncbi_isolation_source: respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_country: New Zealand: Enderby Island; Auckland Islands

ncbi_isolation_source: Tracheobronchial lymph nodes

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Massey University


ncbi_country: Ireland

ncbi_isolation_source: meat

ncbi_organism_name: Yersinia frederiksenii

ncbi_submitter: SC


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_country: South Korea: sea water

ncbi_isolation_source: sea water

ncbi_organism_name: Minwuia sp. IMCC3060

ncbi_submitter: Inha University


ncbi_organism_name: Agrobacterium rubi

ncbi_submitter: Oregon State University


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI


ncbi_submitter: University of Galway


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Bulgaria: Polska Skakavica

ncbi_isolate: DICMUL

ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_strain_identifiers: DICMUL

ncbi_submitter: Piotr Lukasik

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_isolation_source: Beans

ncbi_organism_name: Xanthomonas citri pv. fuscans

ncbi_submitter: Universidade Federal de Pelotas

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. fuscans


ncbi_country: Italy: Trento; Comano Thermal Spring

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: University of Trento


ncbi_country: USA

ncbi_isolation_source: human skin

ncbi_organism_name: Anaerococcus sp.

ncbi_submitter: NHGRI/NIH


ncbi_country: China: Guangzhou

ncbi_organism_name: Laribacter hongkongensis

ncbi_submitter: Zhujiang Hospital


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Shandong

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: China Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hattori Laboratory, Department of Center for Omics and Bioinformatics, Graduate School of Frontier Sciences, The University of Tokyo


ncbi_country: Canada

ncbi_isolation_source: dairy animal

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Memorial University of Newfoundland


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: EPFL


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Achromobacter animicus


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Salinimicrobium catena

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_country: Japan

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_isolation_source: Yoghurt Culture

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Australia: Queensland

ncbi_isolation_source: Homogenized buffalo flies

ncbi_organism_name: Staphylococcus agnetis

ncbi_submitter: The University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland School of Medicine, Institute for Genome Sciences


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_country: Thailand

ncbi_organism_name: Microbispora sp. SCL1-1

ncbi_submitter: King Mongkut's Institute of Technology Ladkrabang


ncbi_organism_name: Prevotella sp.

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus mutans


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 220

ncbi_organism_name: Staphylococcus warneri

ncbi_strain_identifiers: SNUC 3172

ncbi_submitter: University of Calgary


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp.


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: University of Southern California


ncbi_country: Czech Republic

ncbi_isolation_source: bodily cavity

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Masaryk University


ncbi_organism_name: Escherichia coli O174:H21 str. 03-3269

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O174:H21;x__Escherichia coli O174:H21 str. 03-3269


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Klebsiella variicola subsp. tropica

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. tropica


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-5044

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Nonlabens ulvanivorans


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Finland: University of Jyvaskyla

ncbi_isolation_source: experimental exposure to phage

ncbi_organism_name: Flavobacterium columnare

ncbi_submitter: University of Jyvaskyla


ncbi_country: Estonia

ncbi_isolation_source: ear secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_country: Australia

ncbi_organism_name: Escherichia coli

ncbi_submitter: The ithree institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Harbin

ncbi_isolation_source: liver

ncbi_strain_identifiers: CVCC 3383

ncbi_submitter: Dalian University of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Choleraesuis


ncbi_submitter: Inner Mongolia Minzu University


ncbi_country: Italy:Lozzo Atesino

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: IZSVE


ncbi_country: United Kingdom


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Streptomyces sp. NPDC056501

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Frankfurt


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_submitter: Animal and Plant Health Agency


ncbi_country: Thailand: Thung Chang

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_assembly_name: freshwater MAG --- Ja_bin-2689

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: diffuse vent DFF1

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: India: Punjab; Faridkot; Wara Daraka

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Switzerland

ncbi_isolation_source: cheese culture

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Brigham Young University


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: pond water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: National Autonomous University of Mexico


ncbi_organism_name: Escherichia coli

ncbi_submitter: Proteon Pharmaceuticals


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Victivallales bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10276

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Nigeria

ncbi_isolation_source: hospital-1; ICU; urine sample #31

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Auburn University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: marine water

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Caecum


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Edwardsiella tarda

ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_organism_name: Serratia nevei

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Paraprevotella clara

ncbi_submitter: Joint Microbiome Facility


ncbi_country: Japan:Chiba; Awa

ncbi_isolation_source: Marine sediment

ncbi_organism_name: Sediminihabitans luteus

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1313

ncbi_submitter: Broad Institute


ncbi_country: Denmark

ncbi_organism_name: Arcanobacterium phocae

ncbi_submitter: Helsinki University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: China: Sichuan

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_assembly_name: freshwater MAG --- YR3_bin-1139

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS


ncbi_isolation_source: feces

ncbi_organism_name: Shigella sp. FC6556

ncbi_submitter: Ministry of Science and Technology of China


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_isolation_source: sugar cane

ncbi_organism_name: Weissella confusa

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Cerasibacillus sp.

ncbi_submitter: Zhejiang University


ncbi_country: China: Shenzhen

ncbi_organism_name: Aurantiacibacter sp. D1-12

ncbi_submitter: Shenzhen Institute of Guangdong Ocean University


ncbi_organism_name: Sutterella sp. KLE1602

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: USA: Yellowstone Lake; Wyoming

ncbi_isolation_source: biofilm (that was washed of surrounding sediments) attached to a sub-lacustrine hydrothermal vent

ncbi_organism_name: Thermocrinis sp.

ncbi_submitter: Montana State University


ncbi_country: Russia

ncbi_isolation_source: 3rd dilution order of 4-month-old decomposing pine tree sawdust

ncbi_organism_name: Asticcacaulis sp.

ncbi_submitter: ARRIAM


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Methanobacteriaceae archaeon

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Opitutus sp. GAS368

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium coyleae

ncbi_submitter: Duke University


ncbi_isolation_source: pet food (BARF)

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Zurich


ncbi_country: Italy: Ancona

ncbi_isolation_source: blood

ncbi_submitter: University of Genoa


ncbi_strain_identifiers: ATCC 8400

ncbi_submitter: FDA-CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Capnocytophaga sputigena

ncbi_submitter: EMG


ncbi_organism_name: Bacillus cereus


ncbi_organism_name: uncultured bacterium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_organism_name: Bradyrhizobium sp. SZCCHNRI3018

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Romania: Bucharest

ncbi_isolation_source: wastewater

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Research Institute of University of Bucharest - ICUB


ncbi_country: USA: New Hampshire

ncbi_isolation_source: descending colon mucosa

ncbi_submitter: University of New Hampshire


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangxi; Dachang

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human wound

ncbi_organism_name: Pseudomonas yangonensis

ncbi_submitter: Department of Microbiology, Juntendo University School of Medicine


ncbi_country: Italy: Udine

ncbi_isolation_source: Respiratory Sample

ncbi_submitter: Pseudomonas Italian work group


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Henriciella sp.

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudonocardiales bacterium

ncbi_submitter: Colorado State University


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Streptomyces sp. NBC_00669

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_submitter: Faculdade de Medicina Veterinaria e Zootecnia de Botucatu

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Give


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_country: China: Guizhou; Longli

ncbi_organism_name: Acetobacteraceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Streptomyces sp. NPDC051129

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Elizabethkingia anophelis

ncbi_strain_identifiers: CCX

ncbi_submitter: Enze Hospital


ncbi_organism_name: Pseudomonas rhodesiae


ncbi_country: USA: FL; Summerland Key

ncbi_isolation_source: coral surface mucus layer and tissue

ncbi_organism_name: Tenacibaculum sp. XPcli2-G

ncbi_submitter: Meyer Microbes Lab


ncbi_organism_name: Amycolatopsis plumensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: France: Rennes

ncbi_isolation_source: hand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Rennes 1


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Holdemanella porci

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Burkholderiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Neisseria sp.


ncbi_organism_name: Streptomyces pilosus


ncbi_organism_name: Psychrobacillus psychrotolerans

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Fujita Health University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Vienna


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_submitter: National Institute of Health


ncbi_organism_name: Candidatus Udaeobacter sp.

ncbi_submitter: University of California Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;o__Chthoniobacterales;f__Chthoniobacteraceae;g__Candidatus Udaeobacter;x__unclassified Candidatus Udaeobacter;s__Candidatus Udaeobacter sp.


ncbi_country: Slovenia: Piran; Adriatic Sea; Gulf of Piran

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EBI


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Kasetsart University


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alistipes indistinctus


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: China: Yangzhou

ncbi_isolation_source: laboratory

ncbi_organism_name: Escherichia sp. C600e-pL53T-1e

ncbi_submitter: YangZhou university


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: University of Bristol


ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: Universidade Federal Fluminense


ncbi_country: Canada

ncbi_isolation_source: Sunflower Microgreens

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_country: Germany

ncbi_isolation_source: sea water

ncbi_organism_name: Planococcus citreus

ncbi_submitter: institute of microbial technology


ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Yakult Central Institute


ncbi_country: Colombia: Neiva

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Brazil

ncbi_isolation_source: mesenteric lymph node (Sus scrofa domesticus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Melaminivora alkalimesophila

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Jiangsu; Nanjing

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Malaysia

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_organism_name: Escherichia coli


ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterococcus casseliflavus EC10

ncbi_submitter: Broad Institute


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Lebanese American university


ncbi_organism_name: uncultured Parasutterella sp.


ncbi_organism_name: Blautia sp.

ncbi_submitter: The University of Queensland


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Fusobacterium animalis 11_3_2


ncbi_organism_name: Borrelia coriaceae ATCC 43381

ncbi_submitter: Integrated Genomics


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Lactobacillus gasseri


ncbi_country: Canada: Alberta

ncbi_isolation_source: clinical sample from patient with gastroenteritis

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1487


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: Maryland

ncbi_isolation_source: cantaloupe

ncbi_submitter: U.S. Food and Drug Administration


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H31084


ncbi_country: Portugal: Lisbon

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_organism_name: Klebsiella pasteurii

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_country: China

ncbi_isolation_source: Respiratory Medicine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Guangzhou Medical University


ncbi_country: USA: Falmouth; MA

ncbi_isolation_source: salt marsh

ncbi_organism_name: Sedimenticola thiotaurini

ncbi_submitter: University of Minnesota


ncbi_organism_name: Neisseria viridiae

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: Switzerland

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Basel


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Michigan


ncbi_country: China: Gansu

ncbi_isolation_source: rectum

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: NWAFU


ncbi_country: Japan:Kyoto; Kameoka

ncbi_isolation_source: soil

ncbi_organism_name: Arthrobacter sp. StoSoilB22

ncbi_submitter: Research Institute for Sustainable Humanosphere (RISH), Kyoto University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Parolsenella sp.

ncbi_submitter: stanford university school of medicine


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;c__Candidatus Marinamargulisbacteria;x__environmental samples;s__uncultured Candidatus Marinamargulisbacteria bacterium


ncbi_country: Russia: Moscow

ncbi_isolation_source: anus swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Beijing

ncbi_submitter: The General Hospital of the People's Liberation Army


ncbi_isolation_source: cloacal swab

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_country: USA: WA; Seattle

ncbi_isolation_source: urine

ncbi_submitter: Broad Institute