ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: Vaginal Microbiome Research Consortium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_isolation_source: Air filter

ncbi_organism_name: Curtobacterium herbarum

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Complete Genome

ncbi_country: USA: KY

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Dermabacter vaginalis

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Planktothrix agardhii

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Pig Farm

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of KwaZulu-Natal


ncbi_isolation_source: water

ncbi_organism_name: Listeria welshimeri

ncbi_submitter: Cornell University


ncbi_country: United Kingdom:London

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Chile: Santiago

ncbi_isolation_source: endotracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Bergeyella sp.


ncbi_country: China: Yunnan

ncbi_isolation_source: swine farm

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: sichuan university


ncbi_submitter: Prince of Songkla University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Clostridium saudiense

ncbi_submitter: EMG


ncbi_assembly_name: De novo assembly of single-cell genomes

ncbi_genome_category: derived from single cell

ncbi_isolation_source: raw seawater

ncbi_organism_name: Prochlorococcus sp. scB243_498C16

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Jiangsu

ncbi_organism_name: Escherichia coli


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Porphyromonas sp.


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Third People's Hospital of Shenzhen


ncbi_country: Italy: Emilia-Romagna

ncbi_isolation_source: soil

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: University of Ferrara


ncbi_submitter: National Institute of Technology and Evaluation


gtdb_representative: t

ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE2

ncbi_isolation_source: lake water

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of Michigan


ncbi_country: USA: East Lansing; MI

ncbi_isolation_source: conjunctivitis

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Harvard Medical School / Massachusetts Eye and Ear Infirmary


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: University of Parma


ncbi_country: Nigeria

ncbi_isolation_source: Blood culture


ncbi_country: China

ncbi_isolation_source: small intestine

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Jatrophihabitantaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Argentina

ncbi_isolation_source: urine

ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Oxford


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Klebsiella pneumoniae MGH 30

ncbi_strain_identifiers: MGH 30

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae MGH 30


ncbi_country: Uganda

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas phaseoli;x__Xanthomonas phaseoli pv. manihotis;x__Xanthomonas phaseoli pv. manihotis str. UG27


ncbi_country: Colombia: Antioquia

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia diffusa

ncbi_submitter: Northern Arizona University


ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Switzerland: Geneva

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Genomic Research Laboratory (GRL)


ncbi_assembly_name: freshwater MAG --- B4_bin-195

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Key laboratory of dairy biotechnology and engineering


ncbi_isolation_source: Fish spleen

ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: Nippon veterinary and life sciense university


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_strain_identifiers: Bir 290

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: Guttural pouch

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: USA: Michigan

ncbi_organism_name: Enterococcus faecium EnGen0187


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Corynebacterium glucuronolyticum

ncbi_submitter: US Food and Drug Administration


ncbi_country: Indian Ocean: Red Sea

ncbi_isolation_source: (DCM) deep chlorophyll maximum layer

ncbi_organism_name: SAR202 cluster bacterium

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium


ncbi_submitter: Shandong Academy of Agricultural Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_isolation_source: rat gut

ncbi_organism_name: Lactococcus sp. UBA7220

ncbi_submitter: University of Queensland


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: soil organic matter[ENVO:04000008]

ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_country: France: Aquitaine

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Imported/domestic retail Oyster

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Microbacteriaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Ares Genetics


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Russia: Moscow

ncbi_isolation_source: laboratory strain

ncbi_organism_name: Mycolicibacterium smegmatis

ncbi_submitter: Vavilov Institute of General Genetics Russian Academy of Sciences


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: USA: San Francisco; CA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: California Department of Public Health


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Dubosiella sp.


ncbi_organism_name: Escherichia coli O157:H7 str. G5303

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. G5303


ncbi_organism_name: Aerococcus mictus

ncbi_submitter: STATENS SERUM INSTITUT


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Actinocatenispora sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Euryhalocaulis sp.


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Fibrobacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Salinisphaeraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudolactococcus raffinolactis


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: uncultured Geothermobacter sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of La Rioja


ncbi_organism_name: Streptomyces sp. NPDC057554

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Gordonibacter pamelaeae


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Rakuno Gakuen University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Clostridia bacterium


ncbi_submitter: The First Clinical College of Chongqing Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar London


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Akkermansia sp.


ncbi_organism_name: uncultured Bdellovibrio sp.


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Thermosynechococcaceae cyanobacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolate: SPRUCE 670

ncbi_organism_name: Tepidisphaeraceae bacterium

ncbi_strain_identifiers: SPRUCE 670

ncbi_submitter: Georgia Institute of Technology


ncbi_isolate: AOP36_A1_surf _bin _32

ncbi_organism_name: Halomonas sp.

ncbi_strain_identifiers: AOP36_A1_surf _bin _32

ncbi_submitter: Genoscope


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Hong Kong

ncbi_isolation_source: anammox reactor

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: addis ababa university


ncbi_country: Malawi: Lilongwe

ncbi_isolation_source: CSF

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: NORHED grant


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_country: China

ncbi_isolation_source: shrimp

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: China: Fujian

ncbi_isolation_source: anal swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Spain: Madrid

ncbi_isolation_source: blood

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Hospital Universitario La Paz


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: patient

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Candidatus Zhuqueibacterota bacterium

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;x__unclassified Candidatus Zhuqueibacterota;s__Candidatus Zhuqueibacterota bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China: Qinghai

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Neisseria mucosa C102

ncbi_submitter: Broad Institute


ncbi_organism_name: Shewanella oncorhynchi

ncbi_submitter: Nofima


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: HOE Legacy IIB net trap

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: SCOPE


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_country: USA: Colorado

ncbi_isolation_source: uterus

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Actinomycetota bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: United Kingdom: London

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nottingham Trent University


ncbi_country: China: Yunnan

ncbi_isolation_source: Rice flour product

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_organism_name: Escherichia coli

ncbi_submitter: United State Department of Agriculture


ncbi_country: USA: South Dakota; Sanford Underground Research Facility

ncbi_isolation_source: deeply circulating subsurface aquifer fluids

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Japan: Gumma

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Tokyo Institute of Technology


ncbi_organism_name: Gloeobacterales cyanobacterium

ncbi_submitter: East China Normal University


ncbi_country: Greece: Epirus

ncbi_isolation_source: Greek mizithra cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: China: Kunming

ncbi_isolation_source: feces

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Chromosome

ncbi_organism_name: Synechococcus elongatus PCC 7943

ncbi_submitter: University of California, San Diego


ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Sedimentibacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp.


ncbi_country: Australia: Melbourne

ncbi_isolation_source: respiratory

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_organism_name: Helicobacter pylori SA253A

ncbi_submitter: MHH


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_assembly_name: Rumen uncultured genome RUG10749

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: Nanjing Agriculture University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Photorhabdus;s__Photorhabdus temperata;sb__Photorhabdus temperata subsp. temperata;x__Photorhabdus temperata subsp. temperata M1021


ncbi_country: USA: Seattle; WA

ncbi_organism_name: Treponema pallidum subsp. pallidum

ncbi_strain_identifiers: Seattle Nichols

ncbi_submitter: University of Washington


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Merdibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Panama: El Valle de Anton

ncbi_organism_name: Nostoc sp. TCL240-02

ncbi_submitter: Boyce Thompson Institute


ncbi_organism_name: Denitrificimonas caeni

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: VNU-Institute of Microbiology and Biotechnology, Vietnam National University, Hanoi


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Patescibacteria group bacterium UBA3466

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA3466


ncbi_isolation_source: Activated sludge form a lab-scale nitrification reactor

ncbi_organism_name: Aequorivita sp. UBA1846


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD8304

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: South Korea: Jeollanam-do

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus saccharolyticus

ncbi_submitter: Chung-Ang University


ncbi_country: Australia: Kalgoorlie

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Alteromonas mediterranea

ncbi_submitter: University Miguel Hernandez


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: BGI


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: USA: IA

ncbi_isolation_source: intestine

ncbi_submitter: University of Missouri

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Streptosporangium sp. G11

ncbi_submitter: Northwest Minzu University


ncbi_country: China: Yan an

ncbi_organism_name: Sphingomonas sp. BT-65

ncbi_submitter: Yan'an University


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 25569_3

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: uncultured Candidatus Saccharimonas sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;x__environmental samples;s__uncultured Candidatus Saccharimonas sp.


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Nocardioides zhouii

ncbi_refseq_category: reference genome

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Gordonia paraffinivorans NBRC 108238

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Ukraine

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: VNMU 136

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_submitter: Icahn School of Medicine


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Walter Reed Army Medical Center; Washington; DC

ncbi_organism_name: Acinetobacter baumannii OIFC338


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: Oregon State University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: AAFC


ncbi_country: Australia: Queensland

ncbi_isolation_source: urine

ncbi_submitter: The University of Queensland


ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Linnaeus University


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: University of California, Davis


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: jiangnan


ncbi_organism_name: uncultured Ruminiclostridium sp.


ncbi_organism_name: Alistipes communis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Oligoflexia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Switzerland

ncbi_isolation_source: swab hip joint

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Bern


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_isolation_source: blood culture of a hospitalized patient

ncbi_organism_name: Acinetobacter colistiniresistens

ncbi_submitter: Department of Bacteriology, Osaka City University Graduate School of Medicine


gtdb_type_species_of_genus: t

ncbi_organism_name: Terasakiella pusilla DSM 6293

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Candidatus Woodwardiibium sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Woodwardiibium;x__unclassified Candidatus Woodwardiibium;s__Candidatus Woodwardiibium sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides uniformis dnLKV2


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Minnesota

ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Australia: New South Wales

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_isolation_source: Pooled pig faecal samples collected from floor of farm

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Limnochordia bacterium


ncbi_organism_name: Streptomyces sp. NPDC047886

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Myxococcales bacterium


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_submitter: Yangzhou University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh


ncbi_country: Atlantic Ocean

ncbi_isolation_source: total DNA from escal light organ

ncbi_organism_name: Candidatus Enterovibrio escicola

ncbi_submitter: DEEPEND Consortium


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue


ncbi_country: United Kingdom: Nottingham

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: Corynebacterium stationis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: burned soil

ncbi_organism_name: Herminiimonas sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Desulfomonilaceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: University of Montreal


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Sweden: Kristianstad

ncbi_organism_name: Capnocytophaga canis

ncbi_submitter: Genomic Research Laboratory


ncbi_organism_name: Gemella haemolysans

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_country: Germany: Koln

ncbi_isolation_source: respiratory tract infection

ncbi_submitter: AstraZeneca


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: USA

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Hunan

ncbi_isolation_source: farming pond

ncbi_organism_name: Elizabethkingia miricola

ncbi_submitter: Huazhong Agricultural University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China

ncbi_isolation_source: pork

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou University


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: HKU


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Coprobacillus sp. CAG:698

ncbi_submitter: DTU


ncbi_isolation_source: sputum

ncbi_organism_name: Neisseria sp. HMSC072C05

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: India: Chandigarh

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Post Graduate Institute of Medical Education & Research (PGIMER), Chandigarh


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: SHIMANE_PHES  Division of Bacteriology, Shimane Prefectural Institute of Public Health and Environmental Science


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Endomicrobiaceae bacterium

ncbi_submitter: University of Iowa


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Eubacterium ramulus

ncbi_submitter: EMG


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus sp. HMSC074F07


ncbi_country: Australia

ncbi_organism_name: Phascolarctobacterium faecium DSM 14760

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Segetibacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. PDM09

ncbi_submitter: University of Chicago


ncbi_country: Australia: Sydney

ncbi_isolation_source: Blood culture

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: i3 Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Streptomyces lienomycini

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Streptomyces sp. KhCrAH-43


ncbi_organism_name: Burkholderia pseudomallei


ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_organism_name: Kocuria rosea

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptomyces eurocidicus

ncbi_strain_identifiers: NRRL ISP-5604

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_assembly_name: freshwater MAG --- I1_bin-135

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_country: China: Beitun;Xinjiang

ncbi_isolation_source: Freshwater products of animal origin from retail market

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shihezi University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Arthrobacter sp.

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Oman

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Ministry of Health


ncbi_country: USA: WA

ncbi_isolation_source: feces goose

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Enterococcus sp. C67

ncbi_submitter: Northwest A & F University


ncbi_organism_name: Brachyspira aalborgi

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: IA

ncbi_isolation_source: root

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Roseivirgaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Saudi Arabia: Hofuf

ncbi_isolation_source: uterus

ncbi_organism_name: Corynebacterium cystitidis

ncbi_submitter: King Faisal University


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: India

ncbi_isolation_source: river water

ncbi_organism_name: Bacillus sp. CPSM8

ncbi_submitter: University of Georgia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. CPSM8


ncbi_isolation_source: marine water

ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Fervidobacterium sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bartonella sp. AA131HXZ

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Shewanella intestini

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Candidatus Binatus sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__Candidatus Binatus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__Candidatus Binatus;x__unclassified Candidatus Binatus;s__Candidatus Binatus sp.


ncbi_organism_name: Candidatus Scatocola faecipullorum


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: Methylococcales bacterium


ncbi_organism_name: Serratia nevei

ncbi_submitter: McMaster University


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Xanthomonas oryzae pv. oryzicola

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Sphingobacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: University of Minnesota


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Terasakiella sp.

ncbi_submitter: Lund University


ncbi_organism_name: uncultured Cypionkella sp.


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JPIAMR ARMIS


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The Second Affiliated Hospital & Yuying Children's Hospital of Wenzhou Medical University


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Calditrichota bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Singapore: Jurong West

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Kansas State University


ncbi_organism_name: Streptomyces sp. NPDC056659

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_country: USA:Minnesota; Rochester

ncbi_isolate: CIM:MAG 959

ncbi_organism_name: Bacillota bacterium

ncbi_strain_identifiers: CIM:MAG 959

ncbi_submitter: Mayo Clinic


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Detroit; MI

ncbi_isolation_source: vaginal swab

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: University of Maine


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Taizhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: FDA/CDC


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Zambryskiibacteriota;x__unclassified Candidatus Zambryskiibacteriota;s__Candidatus Zambryskiibacteriota bacterium


ncbi_organism_name: Halomonas tibetensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Greece: Corinth

ncbi_isolation_source: internal organs

ncbi_organism_name: Vibrio sp. MM46

ncbi_submitter: Agricultural University of Athens


ncbi_organism_name: Nitrospinaceae bacterium

ncbi_submitter: Princeton University


ncbi_country: South Korea: Taean

ncbi_isolation_source: tidal flat

ncbi_organism_name: Desulfuromonas sp. TF

ncbi_strain_identifiers: TF

ncbi_submitter: Chungbuk National University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Australia: Brisbane

ncbi_organism_name: Prevotella jejuni

ncbi_submitter: University of the Sunshine Coast


ncbi_country: USA: Bethesda

ncbi_isolation_source: wound

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_assembly_name: freshwater MAG --- KR_bin-4016

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Thiotrichales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Aerococcus urinaeequi

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Halomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Rothia sp.


ncbi_country: USA

ncbi_isolation_source: hide

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kansas State University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Kiloniellales bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: uncultured Rhodobacterales bacterium


ncbi_country: USA: Durham; NC

ncbi_isolation_source: urine; clean catch

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Alabama in Huntsville


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: Ectopseudomonas chengduensis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Turkey

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: chicken waste

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: KDCA


ncbi_country: United Kingdom

ncbi_isolation_source: hospital

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Huddersfield


ncbi_isolation_source: chlorinated drinking water; site 1

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Glasgow


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium GW2011_GWA2_42_220


ncbi_country: New Zealand

ncbi_isolation_source: blood

ncbi_organism_name: Yersinia enterocolitica


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Escherichia coli O121

ncbi_submitter: Department of Bacteriology I, National Institute of Infectious Diseases


ncbi_organism_name: Maribacter dokdonensis

ncbi_submitter: University of Southern California


ncbi_country: Rwanda

ncbi_isolation_source: infant

ncbi_organism_name: Escherichia coli DEC13D

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_assembly_name: Rumen uncultured genome RUG10623

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: SAR324 cluster bacterium AG-439-C09

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium AG-439-C09


ncbi_country: China

ncbi_organism_name: Actinomyces trachealis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolate: Halomonas sp. 113

ncbi_organism_name: Halomonas sp. 113

ncbi_strain_identifiers: Halomonas sp. 113

ncbi_submitter: Station Biologique de Roscoff - Sorbonne Universite/CNRS


ncbi_organism_name: Parasphingorhabdus sp.


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Affliated Hospital of Zunyi Medical College


ncbi_isolation_source: cold seep

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: India: Hyderabad

ncbi_isolation_source: Caecum

ncbi_organism_name: Helicobacter pullorum

ncbi_submitter: University of Hyderabad


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_assembly_name: Rumen uncultured genome RUG13663

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Second Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Terriglobia bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_country: India: Vellore

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_isolation_source: Proximal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Sao Paulo


ncbi_country: Thailand: Phitsanulok

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cardiff University


ncbi_country: Brazil

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Indonesia: Raja Ampat; Birds Head; Papua

ncbi_isolation_source: sediment

ncbi_organism_name: Streptomyces sp. F001

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: UFMG


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_country: Iraq

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_assembly_name: Unknown Rizobiales AM_0275

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Universidade Federal de Sao Carlos - UFSCar


ncbi_country: USA: Georgia

ncbi_organism_name: Streptococcus pneumoniae GA47360

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Canada

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Russia: Moscow

ncbi_isolation_source: nasopharynx from a pediatric patient

ncbi_organism_name: Streptococcus pneumoniae 13856

ncbi_submitter: Research Institute of Physical-Chemical Medicine, Moscow, Russia


ncbi_country: Denmark

ncbi_isolation_source: beetroot sprouts (Import)

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Norman; OK

ncbi_isolation_source: Untreated municipal wastewater

ncbi_organism_name: Cloacibacterium normanense

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0051R

ncbi_submitter: Broad Institute


ncbi_country: France: Aurillac

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Robert-Debre, APHP


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_country: China: Zhejiang

ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: The First Affiliated Hospital of Medical College, Zhejiang University


ncbi_organism_name: Avibacterium paragallinarum

ncbi_strain_identifiers: M

ncbi_submitter: Institute of Animal Husbandry and Veterinary Medicine


ncbi_organism_name: uncultured Halomonas sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii TG27319

ncbi_submitter: Translational Genomics Research Institute


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: FDA/CDC


ncbi_organism_name: Burkholderia anthina

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Psychrobacter sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Cryomorphaceae bacterium


ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Stockholm University


ncbi_country: Thailand

ncbi_isolation_source: Poultry

ncbi_submitter: Animal and Plant Health Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:-


ncbi_country: China

ncbi_isolation_source: food

ncbi_organism_name: Cronobacter dublinensis

ncbi_submitter: Capital Institute of Pediatrics,Beijing, China


ncbi_isolation_source: biofilm reactor

ncbi_organism_name: Stenotrophomonas acidaminiphila

ncbi_submitter: Research Center for Eco-Environmental Sciences


ncbi_organism_name: Micropepsaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Enterococcus sp. C12

ncbi_submitter: Northwest A & F University


ncbi_organism_name: uncultured Thomasclavelia sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Morocco

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Equimonas enterica

ncbi_submitter: Quadram Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Candidatus Equimonas;s__Candidatus Equimonas enterica


ncbi_isolation_source: soil

ncbi_organism_name: Acinetobacter sp. YH12208

ncbi_submitter: South China Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Streptosporangiales;f__Nocardiopsidaceae;g__Thermobifida;s__Thermobifida fusca;x__Thermobifida fusca NBRC 14071 = JCM 3263


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Sri Lanka

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: China: Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B182;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Myxococcus stipitatus

ncbi_submitter: MOKWON UNIVERSITY


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Xenorhabdus szentirmaii

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Butyricicoccus pullicaecorum 1.2

ncbi_submitter: Broad Institute


ncbi_country: Peru

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: West China Hospital, Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: India

ncbi_isolation_source: crushed chili peper

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000204


ncbi_organism_name: Plesiomonas shigelloides

ncbi_submitter: Huzhou CDC


ncbi_country: India: Chandigarh

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: National Agri-Food Biotechnology Institute


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: National Institute of Animal Health


ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: The University of Queensland


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_organism_name: uncultured Staphylococcaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Japan: Okinawa Trough

ncbi_isolation_source: hydrothermal vent polychaetes

ncbi_organism_name: Sulfurimonas paralvinellae

ncbi_submitter: Third institute of oceanography, State Oceanic Administration


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Beckwithiibacteriota;s__Candidatus Beckwithbacteria bacterium GW2011_GWB1_47_15


ncbi_country: Lebanon: Beirut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Pathogenomics Lab/LAU


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Boston; MA; USA

ncbi_organism_name: Staphylococcus aureus M1132

ncbi_submitter: Broad Institute


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- Day6-1_bin-304

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: IMG-taxon 2675903054 annotated assembly

ncbi_organism_name: Actinokineospora alba

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Merdibacter sp.


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA-ARS-USMARC


ncbi_country: USA: Vershire; Ely Copper Mine

ncbi_organism_name: Gallionella sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Verrucomicrobiia bacterium


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: HOE Legacy IIB net trap

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: SCOPE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus cereus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Planktophila versatilis

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila versatilis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila versatilis


ncbi_organism_name: Anaerovibrio slackiae

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: UK Health Security Agency


ncbi_organism_name: Bifidobacterium sp. LCP19S3_H1

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Paraburkholderia sp. A1RO-5

ncbi_submitter: KU Leuven


ncbi_submitter: Washington University in St. Louis


ncbi_submitter: University of Galway


ncbi_organism_name: Candidatus Promineifilaceae bacterium

ncbi_submitter: Quanzhou Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;x__unclassified Candidatus Promineifilaceae;s__Candidatus Promineifilaceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Istituto di Scienze Biomediche della Difesa


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Streptomyces roseolus


ncbi_organism_name: Saprospirales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Dialister invisus


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: national health research institutes


ncbi_submitter: University of Milan


ncbi_organism_name: Streptomyces zaomyceticus


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ralstonia sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: University of Michigan


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-254

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: new MAG-254

ncbi_submitter: Micoorganism


ncbi_isolation_source: phycosphere of toxic marne Dinoflagellate

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Zhejiang Ocean University


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_assembly_name: freshwater MAG --- Ki3-D1_bin-0545

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_assembly_name: freshwater MAG --- MJ110802A_bin-113

ncbi_organism_name: uncultured Elusimicrobia bacterium


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: Georgia Tech


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Pseudomonas alabamensis

ncbi_submitter: BGI


ncbi_country: USA:Berrien County; Michigan

ncbi_isolation_source: Jack O Lantern-type pumpkin plants

ncbi_organism_name: Xanthomonas cucurbitae

ncbi_submitter: University of Illinois, Urbana-Champaign


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Sobradinho

ncbi_isolation_source: kidney

ncbi_organism_name: Aeromonas jandaei

ncbi_submitter: UFMG


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacial surface ice

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Aarhus University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured delta proteobacterium


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Maanshan Magnetite Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_assembly_name: freshwater MAG --- AM4_bin-128

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: rat gut

ncbi_organism_name: Lachnospiraceae bacterium UBA7174

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonas citronellolis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: tropical soil

ncbi_organism_name: Brucella pseudogrignonensis

ncbi_submitter: University of Malaya


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Actinomyces culturomici


ncbi_organism_name: Blautia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: Ireland

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Candidatus Elarobacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: Japan:Niigata; Senami Hot Spring

ncbi_isolation_source: hot spring water

ncbi_organism_name: Thermus thermophilus

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_isolation_source: bile

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Ningbo First Hospital


ncbi_submitter: Universidad Complutense de Madrid


ncbi_country: Poland: Lower Silesia

ncbi_isolation_source: Zloty Stock gold mine

ncbi_organism_name: Ensifer sp. M14

ncbi_submitter: University of Firenze


ncbi_country: Malaysia: Penang

ncbi_isolation_source: flower

ncbi_organism_name: Floricoccus tropicus

ncbi_submitter: School of Industrial Technology, Universiti Sains Malaysia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Ktedonobacteraceae bacterium


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Pasteur institute of Tunisia


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Portland State University


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_assembly_name: freshwater MAG --- AM-2014-D1_bin-062

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Flavobacterium granuli

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Pseudoduganella sp.

ncbi_submitter: Guangxi University


ncbi_isolate: Streptococcus mitis

ncbi_organism_name: Streptococcus mitis

ncbi_strain_identifiers: Streptococcus mitis

ncbi_submitter: UNIVERSITY COLLEGE LONDON


ncbi_country: Argentina: Buenos Aires

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Phascolarctobacterium sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Streptomyces narbonensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Moab; Utah

ncbi_isolation_source: biological soil crust

ncbi_organism_name: Microvirga sp. BSC39

ncbi_submitter: Arizona State University


ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: Ngtc CS 7

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Denmark: Region Zealand

ncbi_organism_name: Streptococcus oralis subsp. oralis

ncbi_submitter: Slagelse Hospital


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: South Korea: Wanju

ncbi_isolation_source: Lettuce

ncbi_organism_name: Enterobacter sp. V89_11

ncbi_submitter: Max Rubner-Institut


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: feces from pig

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Veillonellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Variovorax paradoxus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: University of Oslo


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: France

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universite Paris Sud


ncbi_country: Russia: Obolensk

ncbi_isolation_source: Poultry environment

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: University of Alberta


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: Palacky University Olomouc


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA

ncbi_isolation_source: tomato fruit

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: The Ohio State University


ncbi_country: Russia: Uzon Caldera; Kamchatka; Zavarzin hot spring

ncbi_isolation_source: hot spring

ncbi_organism_name: Desulfurella multipotens

ncbi_submitter: Laetitia Wilkins's shared submissions


ncbi_organism_name: Gaiella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China: Dexing Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Faculty of Pharmacy of the University of Porto


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Japan: Ago Bay; Honshu

ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: University of Hawaii-Manoa


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Germany

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_country: Brazil: Presidente Prudente

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrosomonadaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: USA: Hawaii

ncbi_isolation_source: Aquaculture pipe deposits

ncbi_organism_name: Vibrio rotiferianus

ncbi_submitter: Oregon State University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bosea sp. (in: a-proteobacteria)

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. (in: a-proteobacteria)


ncbi_country: USA: near Point Barrow; Alaska

ncbi_isolation_source: sea ice

ncbi_organism_name: Paraglaciecola sp. MB-3u-78

ncbi_submitter: University of Alaska Fairbanks


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Forsyth Institute


ncbi_country: Germany: Bavaria

ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Dysgonomonas sp. PFB1-18

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroides intestinalis


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Salmonella enterica subsp. salamae


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Bordetella pertussis H921

ncbi_submitter: JCVI


ncbi_organism_name: Methylibium sp.


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Zhejiang

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 63 (4-2542528)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 63 (4-2542528)


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Canada:Terrace; Lakelse Hot Spring

ncbi_isolation_source: hot spring sediment

ncbi_submitter: University of British Columbia


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: sediment trap from marine abyssalpelagic zone

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Hylemonella sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Zurich


ncbi_assembly_name: Rumen uncultured genome RUG10834

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: Germany

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: FOI Swedish Defence Research Agency


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Beijing

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Flavobacterium araucananum


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptococcus suis

ncbi_submitter: AMSTERDAM UMC


ncbi_organism_name: Kribbella orskensis

ncbi_strain_identifiers: VKM Ac-2538

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Switzerland

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Basel


ncbi_organism_name: Elstera sp.

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Coprococcus eutactus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_country: USA

ncbi_isolation_source: WOUND/ABSCESS

ncbi_submitter: JCVI


ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: Bodily fluid


ncbi_organism_name: Segatella copri

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Adlercreutzia sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: France

ncbi_isolation_source: Prepared meat meal

ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: University of Surrey


ncbi_isolation_source: Animal feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_organism_name: Enterocloster clostridioformis


ncbi_isolation_source: lake water

ncbi_organism_name: Oscillatoriales cyanobacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Germany: Munster

ncbi_isolation_source: Rotting apple

ncbi_organism_name: Erwinia billingiae

ncbi_submitter: Zoological Institute, Kiel University


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Citromicrobium sp.


ncbi_country: USA: PA

ncbi_isolation_source: canine feces

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: spleen mouse

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Syntrophotalea sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Barnesiella sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp. AF45-4BH

ncbi_submitter: BGI


ncbi_country: Norway: Sarpsborg/Fredrikstad

ncbi_isolation_source: wastewater treatment plant biodam

ncbi_organism_name: Legionella pneumophila subsp. pneumophila

ncbi_submitter: Norwegian Defence Research Establishment (FFI)


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: International Space Station

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: NASA Ames Research Center


ncbi_organism_name: uncultured Helicobacter sp.


ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: Zhejiang University


ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: Cincinnati Childrens Hospital


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Canada: Chicoutimi

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Canada: Ontario

ncbi_isolation_source: Food

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20122026


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Banfield Lab, University of California, Berkeley