ncbi_country: New Zealand: Wai-iti river; Nelson

ncbi_isolation_source: freshwater Microcoleus biofilm

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: University of Auckland


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Antwerp


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 16ft depth

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;s__Candidatus Gottesmanbacteria bacterium RBG_16_37_8


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Exiguobacterium sp. MER 193

ncbi_strain_identifiers: MER 193

ncbi_submitter: Jet Propulsion Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. MER 193


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Prevotella sp. UBA3757

ncbi_submitter: University of Queensland


ncbi_assembly_name: Rumen uncultured genome RUG10402

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_level: Chromosome

ncbi_country: Denmark

ncbi_isolation_source: chicken

ncbi_organism_name: Enterococcus durans

ncbi_strain_identifiers: VREdu

ncbi_submitter: University of Copenhagen


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Candidatus Eubacterium faecigallinarum

ncbi_submitter: EMG


ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: Milk Ice Cream

ncbi_organism_name: Staphylococcus saprophyticus


ncbi_organism_name: Marivita sp.

ncbi_submitter: German Federation for Biological Data


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: bovine lymph node

ncbi_submitter: USDA-ARS-USMARC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Cereibacter sphaeroides


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Netherlands

ncbi_isolation_source: Blood


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: uncultured Chryseobacterium sp.


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: FAFU


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Mexico: Guadalajara

ncbi_isolation_source: Respiratory tract secretions

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_country: Canada: Lacombe

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_name: freshwater MAG --- LaPlata-a_bin-2548

ncbi_organism_name: uncultured Ignavibacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__environmental samples;s__uncultured Ignavibacteriota bacterium


ncbi_organism_name: Arcanobacterium sp.


ncbi_isolation_source: cloacal swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Henan Agricultural University


ncbi_country: USA: NJ

ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Acidaminococcus fermentans


ncbi_country: Kenya

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: India: Telangana

ncbi_isolation_source: milk

ncbi_organism_name: Brucella abortus

ncbi_submitter: National Dairy Development Board


ncbi_organism_name: Polymorphospora sp. NPDC051019

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Raoultibacter sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Caldisericia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Pantoea eucrina


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: wheat rhizosphere from Bare Fallow land

ncbi_organism_name: Pseudomonas sp. BF-R-19

ncbi_submitter: Rothamsted Research


ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: Icahn School of Medicine


ncbi_assembly_name: freshwater MAG --- MJ111018A_bin-568

ncbi_organism_name: uncultured Methylophilaceae bacterium


ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_country: Canada: Guelph

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Azospirillum sp.

ncbi_submitter: EMG


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: University College Cork


ncbi_submitter: University of Florida


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Kenya Medical Research Institute


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: Univeristy of Aberdeen


ncbi_assembly_name: Rumen uncultured genome RUG13231

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Escherichia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_type_species_of_genus: t

ncbi_organism_name: Butyribacter intestini

ncbi_refseq_category: reference genome

ncbi_submitter: BGI-shenzhen

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: Skin swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Pseudomonas sp. ZH-FAD

ncbi_strain_identifiers: ZH-FAD

ncbi_submitter: Dalian university of technology


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Atlantic Ocean: Gulf of Cadiz

ncbi_isolation_source: cold seep sediment sample 8 MPa II

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: Candidatus Scatosoma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Scatosoma;x__unclassified Candidatus Scatosoma;s__Candidatus Scatosoma sp.


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_assembly_name: Listeriaceae bacterium FSL F6-969

ncbi_country: USA: Colorado

ncbi_isolation_source: water

ncbi_organism_name: Listeria cornellensis FSL F6-0969

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria cornellensis;x__Listeria cornellensis FSL F6-0969


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Helicobacter ganmani


ncbi_isolation_source: rhizosphere soil culture M59

ncbi_organism_name: Isoptericola sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_submitter: Yangzhou University


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Candidatus Merdousia sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;f__Intestinicryptomonaceae;g__Candidatus Merdousia;x__unclassified Candidatus Merdousia;s__Candidatus Merdousia sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: Alteromonas oceani

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JiLin Agricultural Science and Technology University


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Lysinibacillus sp. NPDC086135

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Haemaphysalis qinghaiensis


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bordetella bronchiseptica

ncbi_submitter: USDA-ARS


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Janibacter hoylei


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_isolate: SPRUCE 448

ncbi_organism_name: Candidatus Dormibacteria bacterium

ncbi_strain_identifiers: SPRUCE 448

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;x__unclassified Candidatus Dormibacteria;s__Candidatus Dormibacteria bacterium


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Akkermansia sp.


ncbi_organism_name: Nocardia xishanensis


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University Hospital Puerta del Mar


ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_genome_category: derived from single cell

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Bigelow Laboratory For Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Deinococcales bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: lichen metagenome

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Phycicoccus sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: EMG


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: New Zealand: Wai-iti river; Nelson

ncbi_isolation_source: freshwater Microcoleus biofilm

ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: University of Auckland


ncbi_country: Chile: Metropolitan Region

ncbi_isolation_source: Isolated from an abscess of an 32 years old female

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Montreal


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia dolosa

ncbi_submitter: University of Michigan


ncbi_organism_name: Trichormus variabilis N2B

ncbi_submitter: University of Missouri-St. Louis


ncbi_isolation_source: Chicken Wing

ncbi_organism_name: Campylobacter coli

ncbi_submitter: FDA


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Russia: Karabetova Gora near the city of Taman

ncbi_isolation_source: sediment and water from a salsa lake of a terrestrial mud volcano

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: not available

ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: France

ncbi_organism_name: Pseudomonas syringae pv. aptata

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. aptata


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Egypt: Alexandria

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Faculty of Pharmacy, Alexandria University


ncbi_country: Netherlands: Utrecht

ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Utrecht University


ncbi_organism_name: Bacillus sp. C30

ncbi_submitter: Ecole Centrale de Lyon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. C30


ncbi_country: USA: New Hampshire

ncbi_isolation_source: descending colon brush

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of New Hampshire


ncbi_country: Romania: Puturosu Mountain

ncbi_isolate: Sulfur Cave

ncbi_isolation_source: Cave biofilm

ncbi_strain_identifiers: Sulfur Cave

ncbi_submitter: ULB


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M034S2

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Thermus sp.

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Succinatimonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Methylopila turkensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Blattabacterium punctulatus

ncbi_strain_identifiers: CPUml

ncbi_submitter: Okinawa Institute of Science and Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Streptococcus intermedius F0395

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_assembly_name: Rumen uncultured genome RUG13739

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human

ncbi_organism_name: Vibrio parahaemolyticus 10290

ncbi_submitter: UTRECHT UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus 10290


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Iraq: Dukok

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium medicae

ncbi_submitter: University of Minneosta


ncbi_organism_name: Odoribacter laneus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Baikal Lake region; Siberia

ncbi_organism_name: Mesorhizobium kowhaii

ncbi_submitter: ARRIAM


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: University College Cork


ncbi_country: United Kingdom

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leeds


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Streptomyces sp. Amel2xB2

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Aminobacterium colombiense

ncbi_submitter: University of Waterloo


ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: EMG


ncbi_submitter: Wayne State University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Halomonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: stool

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000954


ncbi_isolation_source: erosive bamboo slips of Kingdom Wu

ncbi_organism_name: Pandoraea sp. B-6

ncbi_submitter: Central South university


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Acidovorax sp. FG27

ncbi_submitter: Graduate School of Biology-Oriented Science and Technology, Kindai University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas umsongensis

ncbi_submitter: Central South University


ncbi_country: USA: Indian River Lagoon; Florida

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Central Florida


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Synergistales bacterium

ncbi_submitter: Institute of Applied Ecology


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_name: Rumen uncultured genome RUG14866

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Israel

ncbi_isolation_source: mastitis

ncbi_organism_name: Escherichia coli

ncbi_submitter: Heriot-Watt University


ncbi_isolation_source: Caecum


ncbi_country: Ethiopia: Babile; Somali region

ncbi_isolation_source: fermented camel milk

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Research Group for Gut, Microbes and Health


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Phocaeicola sp.


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Italy

ncbi_isolation_source: Pecorino Toscano cheese

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Parma


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Marinovum sp.

ncbi_submitter: German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Bacillus cereus BDRD-ST24

ncbi_submitter: Naval Medical Research Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus BDRD-ST24


ncbi_country: Peru


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-186

ncbi_submitter: Broad Institute


ncbi_isolation_source: gut content

ncbi_organism_name: Adlercreutzia murintestinalis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: USA: midwestern states

ncbi_isolation_source: root/leaf

ncbi_organism_name: Xanthomonas sp. fls2-241-TYG-148

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Mesorhizobium sp. IMUNJ 23033

ncbi_strain_identifiers: IMUNJ 23033

ncbi_submitter: Inner mongolia university for nationalities


ncbi_organism_name: Veillonella parvula

ncbi_submitter: University of Trento


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Calgary


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10481

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: Rumen uncultured genome RUG13060

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Chthonomonadaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Hunan

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH16051

ncbi_submitter: South China Agricultural University


ncbi_country: Russia: Uzon Caldera; Kamchatka; Zavarzin hot spring

ncbi_isolation_source: hot spring

ncbi_organism_name: Thermodesulfovibrio aggregans

ncbi_submitter: Laetitia Wilkins's shared submissions


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: bacterium


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: the hong kong university of science and technology


ncbi_isolation_source: no

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Southwest Medical University


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Agroscope


ncbi_country: USA

ncbi_isolation_source: Lab culture with RPMI 1640 medium plus 10% FBS

ncbi_organism_name: Blastococcus sp. TML/M2B

ncbi_submitter: Center for Biologics Evaluation and Research, Food and Drug Administration


ncbi_country: Norway: Bergen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: China

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_country: USA: Cambridge; MA

ncbi_organism_name: Escherichia coli

ncbi_submitter: MIT


ncbi_organism_name: Streptococcus iniae

ncbi_strain_identifiers: CAIM 527

ncbi_submitter: CIAD, A.C.


ncbi_organism_name: uncultured archaeon

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human gut

ncbi_organism_name: Parabacteroides johnsonii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. (in: high G+C Gram-positive bacteria)


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Cameroon

ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: Emerging Pathogens Institute, University of Florida,


ncbi_country: Norway

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: \The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: Denmark: Lynetten

ncbi_isolation_source: activated sludge from Lyne_18-Q3-R50-59

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Aalborg University


ncbi_country: Malaysia

ncbi_submitter: Institute for Medical Research


ncbi_country: China: Beijing

ncbi_isolation_source: vaginal

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_country: Germany

ncbi_isolation_source: nutrient-rich water

ncbi_organism_name: Rhodobacter capsulatus

ncbi_submitter: University of British Columbia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasmatales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Ecuador: Quito

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad Central del Ecuador


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: water column

ncbi_organism_name: Vibrio sp. V12_P9A6T4

ncbi_submitter: Instituto de ecologia


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Affiliated Jinhua Hospital


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Kingston Uniiversity


ncbi_country: Russia: Vladivostok; Troitsa Bay

ncbi_organism_name: Zobellia russellii

ncbi_submitter: Pacific Institute of Bioorganic Chemistry


ncbi_isolate: AOP35_03H_surf _bin _19

ncbi_organism_name: Brevibacterium yomogidense

ncbi_strain_identifiers: AOP35_03H_surf _bin _19

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Campylobacter sp. 1BO

ncbi_submitter: Universidad Austral de Chile


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: USDA 164

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Italy

ncbi_isolation_source: Gastronomic preparations

ncbi_organism_name: Bacillus tropicus

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Biogas Institute of Ministry of Agriculture and Rual Affairs


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: EMG


ncbi_isolation_source: lake water

ncbi_organism_name: Holophagaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10439

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Egypt: Alexandria

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Faculty of Pharmacy, Alexandria University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus salivarius SK126

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: France

ncbi_isolation_source: dairy product

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Leptospiraceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Sweden

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli O25b:H4

ncbi_submitter: Public Health Agency of Sweden


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: nasal swab

ncbi_submitter: Heidelberg University Hospital


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Oxalobacter formigenes

ncbi_submitter: Cleveland Clinic


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: VA

ncbi_isolation_source: creek sediment

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_isolation_source: Proximal colon


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Phocaeicola gallistercoris

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Greece

ncbi_isolation_source: artisanal yoghurt

ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_strain_identifiers: CIRM-BIA 1586

ncbi_submitter: Brigham Young University


ncbi_country: Korea: Cheonju

ncbi_isolate: Sequencing

ncbi_submitter: Catholic university of Korea


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Tepidisphaerales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_assembly_name: freshwater MAG --- UppL7s_bin-0427

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Nottingham


ncbi_organism_name: Streptomyces sp. NPDC057546

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Bosea thiooxidans

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Pseudolactococcus paracarnosus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured Acidiphilium sp.


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: diffuse vent DFF1

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Caldicoprobacterales bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Dialister sp.


ncbi_country: Pacific Ocean

ncbi_isolation_source: marine sediment

ncbi_organism_name: Thalassospira xiamenensis

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources of China


ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef seawater

ncbi_submitter: James Cook University


ncbi_organism_name: Vibrio cidicii

ncbi_submitter: University of Copenhagen, Faculty of Health and Medical Sciences


ncbi_country: China: Shanghai

ncbi_isolation_source: urogenital tract

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Shanghai Skin Disease Hospital


ncbi_isolation_source: Fecal swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Naval Medical Research Center, Biological Defense Research Directorate


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- E-1_bin-108

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Taiwan

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_organism_name: Phycisphaerales bacterium


ncbi_country: Togo: Lome

ncbi_isolation_source: pus

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universite de Lome


ncbi_organism_name: uncultured Candidatus Binatia bacterium

ncbi_submitter: concordia university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__environmental samples;s__uncultured Candidatus Binatia bacterium


ncbi_isolation_source: Faeces


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: NC

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Nocardioides sp. BYT-33-1

ncbi_submitter: xinjiang normal university


ncbi_country: China: Guangdong

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Liaocheng University


ncbi_country: USA: Ohio

ncbi_isolation_source: hospital shower hose biofilm

ncbi_organism_name: Blastomonas sp. CCH3-E3

ncbi_submitter: U.S. Environmental Protection Agency


ncbi_country: Norway: Bergen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Daejeonella sp.

ncbi_submitter: Stanford University


ncbi_country: South Korea

ncbi_isolation_source: brick of fermented soybean (meju)

ncbi_organism_name: Lysinibacillus boronitolerans F1182

ncbi_submitter: Korea Food Research Institute


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Marinobacter nauticus

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: USA: OH

ncbi_isolation_source: Milk filter (dairy cow farm)

ncbi_submitter: USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: CON4 bin10

ncbi_organism_name: Fibrobacter sp.

ncbi_strain_identifiers: CON4 bin10

ncbi_submitter: China Agricultural University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Listeria monocytogenes SLCC7179

ncbi_submitter: ERA-NET / Spatelis


ncbi_organism_name: Acinetobacter schindleri


ncbi_isolation_source: transconjugant from Escherichia coli strain HB42

ncbi_organism_name: Escherichia coli

ncbi_submitter: Henan Agricultural University


ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Loxodonta africana

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Citrobacter farmeri GTC 1319

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Japan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: uncultured Armatimonadia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Thailand: Trang

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: Brazil

ncbi_isolation_source: lung (Sus scrofa)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: USA: Arkansas

ncbi_organism_name: Haematospirillum jordaniae

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: blood culture

ncbi_submitter: Heidelberg University Hospital


ncbi_isolation_source: Environmental/Industrial

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Chicago

ncbi_isolation_source: BAL

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Eubacterium sp. CAG:180

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. CAG:180


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: passage

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Marinovum algicola DG 898

ncbi_submitter: LGC Genomics


ncbi_organism_name: Halocynthiibacter sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Desulfomicrobiaceae bacterium


ncbi_country: China: Hangzhou

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Tang lab


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Prevotella pallens

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Jiangnan University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Unknown Sphingobacteriales AM_0832

ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: Universidade Federal de Sao Carlos - UFSCar


ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_name: Rumen uncultured genome RUG13031

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IMR


ncbi_country: Svalbard: Smeerenburgfjorden

ncbi_isolate: MAG AM3-B

ncbi_isolation_source: marine sediment; Station J; 5-10 cmbsf; microcosm with tetrathionate

ncbi_organism_name: Candidatus Sulfomarinibacter kjeldsenii

ncbi_strain_identifiers: MAG AM3-B

ncbi_submitter: University of Vienna


ncbi_country: Egypt: Mansoura

ncbi_isolation_source: Urinary catheter

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: New Zealand: Christchurch

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CMB35_CHL L4:2

ncbi_submitter: University of Canterbury


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_country: Morocco: Rabat

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: MedBiotech laboratory, faculty of medicine and pharmacy, rabat/ Mohamed V university rabat


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Sphingobacterium thalpophilum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Victivallales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_country: South Korea: Ulsan

ncbi_organism_name: Mycobacterium kansasii

ncbi_submitter: Forschungszentrum Borstel, Germany


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiota bacterium


ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: South China Agricultural University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Sphingobium herbicidovorans NBRC 16415

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Portland State University


ncbi_country: USA

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Icahn School of Medicine


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: NGH Pa03

ncbi_submitter: King Abdullah University Science and Technology


ncbi_organism_name: Psychrobacter sp. CAL346-MNA-CIBAN-0220

ncbi_submitter: University of Florence


ncbi_country: China: Guangzhou

ncbi_organism_name: Laribacter hongkongensis

ncbi_submitter: Zhujiang Hospital


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: soil

ncbi_organism_name: Ensifer sp. ENS10

ncbi_submitter: University of Chicago


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: Dietzia maris

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: KU Leuven


ncbi_organism_name: Phascolarctobacterium sp. CAG:266


ncbi_organism_name: Tepidiformaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: bacterium

ncbi_submitter: Northwestern University


ncbi_country: France

ncbi_isolation_source: reactal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_assembly_name: De novo assembly of KCRI isolate RDK40_51K

ncbi_isolation_source: wound swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Brevundimonas intermedia

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Prevotella sp.


ncbi_country: Japan:Shizuoka; Fujieda

ncbi_organism_name: Lysobacter auxotrophicus

ncbi_submitter: Shizuoka Institute of Science and Technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_country: China: Jiangsu

ncbi_isolation_source: feces

ncbi_submitter: Nanjing agticultural university


ncbi_organism_name: Collinsella sp.


ncbi_organism_name: [Actinobacillus] rossii

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;x__Pasteurellaceae incertae sedis;x__[Pasteurella] aerogenes-[Pasteurella] mairii-[Actinobacillus] rossii complex;s__[Actinobacillus] rossii


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Shandong

ncbi_organism_name: Microbacterium sp. USTB-Y

ncbi_strain_identifiers: USTB-Y

ncbi_submitter: University of Science and Technology Beijing


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Spain: Galicia; Redondela

ncbi_organism_name: Rahnella sp. RFA10(1/100)

ncbi_submitter: Universidad de Santiago de Compostela


ncbi_country: Czech Republic: Praha

ncbi_submitter: University of Veterinary Sciences


ncbi_country: South Korea: Goyang-si; Gyeonggi-do

ncbi_strain_identifiers: 15RDA-Livestock feces-ECO087

ncbi_submitter: Korea University Graduate School


ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: wound l foot

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: China: Shenzhen

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: BGI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: gas-works plant 10 km north of Gottingen

ncbi_isolation_source: environmental

ncbi_organism_name: Rhodococcus opacus PD630

ncbi_submitter: University of Bologna


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Tanzania

ncbi_isolation_source: nasal swabs from HIV infected patient

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Bergen


ncbi_isolation_source: poultry farm

ncbi_organism_name: Exiguobacterium aurantiacum

ncbi_submitter: Shandong First Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium aurantiacum


ncbi_country: USA

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Tissue

ncbi_organism_name: Citrobacter farmeri

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: Massachusetts General Hospital


ncbi_assembly_name: freshwater MAG --- AM_bin-2074

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nankai University


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: urine

ncbi_submitter: Roskilde University


ncbi_organism_name: Chthoniobacter sp.

ncbi_submitter: Czech Academy of Science


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: University of Calgary


ncbi_assembly_name: Rumen uncultured genome RUG771

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Antarctica

ncbi_isolation_source: Antarctica sediment

ncbi_organism_name: Jeotgalibaca sp. MA1X17-3

ncbi_submitter: National Institute of Fisheries Science


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T74141

ncbi_submitter: Broad Institute


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Weissella paramesenteroides

ncbi_submitter: Brigham Young University


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Norway: Byfjorden; Bergen

ncbi_isolation_source: biofilm scrapped from cow tibia surface after nine month of incubation underwater in a fjord

ncbi_organism_name: Candidatus Marithrix sp.

ncbi_submitter: ProBone

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Thiotrichaceae;g__Candidatus Marithrix;x__unclassified Candidatus Marithrix;s__Candidatus Marithrix sp.


ncbi_organism_name: Shinella pollutisoli

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Kingella sp.

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_isolation_source: Food production environment

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Atlantic Ocean

ncbi_isolation_source: gill

ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: University of Vienna


ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Sulfurimonadaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA: Plum Island; MA

ncbi_isolation_source: Filtered seawater (<1uM filter)

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_country: Colombia: Santander de Quilichao

ncbi_isolation_source: cassava fermentation tank

ncbi_organism_name: Lactobacillus sp. UBA5813

ncbi_submitter: University of Queensland


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Sweden

ncbi_organism_name: Escherichia coli

ncbi_submitter: Karolinska Institutet


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Enterobacter hormaechei


ncbi_country: USA: Texas

ncbi_isolation_source: radical nodules from peanut plants

ncbi_organism_name: Bradyrhizobium sp. C-145

ncbi_submitter: UNRC


ncbi_organism_name: Lachnospiraceae bacterium 10-1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: Nanyang Technological University


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Candidatus Nanosyncoccus nanoralicus

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;s__Candidatus Nanosyncoccus nanoralicus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;s__Candidatus Nanosyncoccus nanoralicus


ncbi_country: Thailand

ncbi_isolation_source: raw shrimp

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Health Canada


ncbi_country: Hong Kong

ncbi_isolation_source: stool

ncbi_organism_name: Proteus mirabilis


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: USA: MI

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Vibrio sp. 506

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_submitter: University of Bern


ncbi_organism_name: Blautia caecimuris

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Canada: Toronto

ncbi_isolation_source: Liver Sausage

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_submitter: Pennsylvania State University


ncbi_country: China: Shenzhen

ncbi_isolation_source: waste water

ncbi_organism_name: Xenophilus aerolatus

ncbi_submitter: Tsinghua University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Finland

ncbi_isolation_source: feces

ncbi_organism_name: Yersinia frederiksenii


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_country: Bulgaria

ncbi_organism_name: Parabacteroides johnsonii

ncbi_submitter: Quadram Institutte


ncbi_isolation_source: rhizosphere soil culture M56

ncbi_organism_name: Pseudarthrobacter sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Denmark

ncbi_isolation_source: Hepato-biliary-pancreatic

ncbi_organism_name: Enterococcus faecalis EnGen0066

ncbi_submitter: Broad Institute


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_isolate: Francisella tularensis X17000610

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_strain_identifiers: Francisella tularensis X17000610

ncbi_submitter: WAGENINGEN UR


ncbi_country: Oman

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Ministry of Health


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_assembly_name: freshwater MAG --- AM-2014-D5_bin-121

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_assembly_name: freshwater MAG --- LaPlata-b_bin-0184

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Xanthomonas protegens

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: EMG


ncbi_organism_name: Metapseudomonas otitidis

ncbi_submitter: KAUST


ncbi_organism_name: Acinetobacter baumannii


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Embrapa Maize and Sorghum


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;x__environmental samples;s__uncultured Candidatus Obscuribacterales bacterium


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Rhodanobacter sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Zymomonas mobilis

ncbi_submitter: Teagasc


ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: Enterococcus sp.

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China


ncbi_organism_name: uncultured Thiobacillus sp.


ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Institute of Aquaculture, University of Stirling, Stirling, UK


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: Human feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The University of Tokyo


ncbi_assembly_name: freshwater MAG --- KR_bin-4508

ncbi_organism_name: uncultured beta proteobacterium


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-0805

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Ares Genetics


ncbi_country: Germany: Freising

ncbi_isolation_source: Caecal content

ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: RWTH Aachen University Hospital


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of the Witwatersrand


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus HOAG6034

ncbi_submitter: Broad Institute


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Loyola University Chicago


ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_organism_name: Cupriavidus metallidurans


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Halopseudomonas salina

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Epibacterium ulvae

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Roseburia sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Aeromonas sp. s2

ncbi_submitter: Hangzhou CDC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shanghai

ncbi_isolation_source: hydrothorax

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: Anadarko; OK

ncbi_isolation_source: freshwater spring sediment

ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_country: China

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_country: Chile: Region del Bio Bio

ncbi_isolation_source: walnut tree

ncbi_organism_name: Xanthomonas arboricola

ncbi_submitter: FDA


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01033

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01033


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: Venous Blood

ncbi_submitter: GUANGZHOU CDC,China


ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Borreliella garinii

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_organism_name: Vibrio maritimus

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pelagibacterales bacterium

ncbi_submitter: EMG


ncbi_country: Georgia

ncbi_isolation_source: Matsoni fermented milk product

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: University of Ljubljana


ncbi_isolation_source: River

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: India: Uttar Pradesh; Deoria; Savreji

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: United Kingdom

ncbi_isolation_source: Submandibular lymph node abscess

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Komagataeibacter saccharivorans NRIC 0614

ncbi_strain_identifiers: NRIC 0614

ncbi_submitter: Tokyo University of Agriculture


ncbi_country: Benin

ncbi_isolation_source: Blood cultures

ncbi_organism_name: Staphylococcus epidermidis


ncbi_organism_name: Marinomonas primoryensis

ncbi_submitter: University of East Anglia


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_country: USA

ncbi_isolation_source: surface swab

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Pantoea sp. B40

ncbi_submitter: Kazusa DNA Research Institute


ncbi_country: Morocco: Aoudal

ncbi_isolation_source: nodule

ncbi_organism_name: Bradyrhizobium rifense

ncbi_submitter: LMU Munich


ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: cheese

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: USA: Pittsburgh; PA

ncbi_isolation_source: eye

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: University of Mississippi Medical Center


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SurvCARE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: New York

ncbi_isolation_source: cystic fibrosis isolate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Klebsiella sp. 92307

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Sporosarcina sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Thermodesulfovibrionales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sao Paulo


ncbi_country: Japan

ncbi_isolation_source: honey

ncbi_organism_name: Paenibacillus cineris

ncbi_submitter: National Agriculture and Food Research Organization


ncbi_country: Denmark

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli C213_10

ncbi_submitter: University of Maryland School of Medicine


ncbi_assembly_name: freshwater MAG --- Day2-2_bin-469

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Trueperella pyogenes


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Lethbridge


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: bile

ncbi_submitter: West China Hospital, Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guizhou

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: National Institute of Infectious Diseases


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: University of California Riverside


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: MA; Boston; Tufts Medical Center

ncbi_isolation_source: peritoneal cavity

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Montana State University


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: SC


ncbi_country: Mayotte

ncbi_organism_name: Leptospira mayottensis 200901122

ncbi_submitter: J. Craig Venter Institute


ncbi_strain_identifiers: Broiler parent59

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Trento


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: China: Beihai

ncbi_isolation_source: mangrove sediment

ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: Guangxi university


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Staphylococcus aureus VET0198R

ncbi_submitter: Broad Institute


ncbi_country: Nigeria: Lagos

ncbi_isolation_source: water from electronic waste dumpsite

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Ibadan, Nigeria


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter geojensis

ncbi_submitter: Shantou University


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Enhydrobacter sp. UBA4563

ncbi_submitter: University of Queensland


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Prof. Waclaw Dabrowski Institute of Agriculture and Food Biotechnology State Research Institute


ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Leeuwenhoekiella blandensis


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Rutgers University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Institute of Microbiology, Veterinary University Vienna


ncbi_submitter: Universidad de Chile


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Czech Republic

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Fudan University


ncbi_country: Italy: Turi

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: University of Alberta


ncbi_assembly_name: freshwater MAG --- Ki1-0-7m_bin-1314

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: BILS


ncbi_country: Russia: Moscow

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: Australia: Davies Reef

ncbi_organism_name: bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Denmark

ncbi_organism_name: Campylobacter curvus

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: France

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_organism_name: Lentibacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: Australia

ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Brazil: Tatui

ncbi_isolation_source: Cecum and rectal contents from Capybaras

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Brazilian Center for Research in Energy and Materials (CNPEM)


ncbi_country: China: Jiangsu

ncbi_isolation_source: Genital tract

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou university


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_country: Netherlands: Delft; Harnasch polder WWTP

ncbi_isolate: labscale reactor_MAG40

ncbi_isolation_source: aerobic granular sludge sequencing batch reactor fed with glycerol; inoculum derived from raw wastewater

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_strain_identifiers: labscale reactor_MAG40

ncbi_submitter: TU Delft

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Mitsuokella jalaludinii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada: Alberta

ncbi_organism_name: Shigella flexneri


ncbi_country: China: Hangzhou

ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella sp. S124_66631

ncbi_submitter: Zhejiang University


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Peking Union Medical College Hospital


ncbi_country: Indian Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Paracoccus indicus

ncbi_submitter: Zhejiang Wanli University


ncbi_country: USA: Vidalia Region; GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_country: USA

ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 647609

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_organism_name: Salmonella sp. NW924

ncbi_submitter: Sichuan University


ncbi_organism_name: Minisyncoccales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;o__Minisyncoccales;s__Minisyncoccales bacterium


ncbi_country: India

ncbi_isolation_source: Endotracheal aspirate

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Christian Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Beijing

ncbi_organism_name: Brucella melitensis bv. 1 str. 16M

ncbi_submitter: Chinese PLA Institute for Disease Control & Prevention, Academy of Military Medical Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella melitensis;x__Brucella melitensis bv. 1;x__Brucella melitensis bv. 1 str. 16M


ncbi_organism_name: Hoylesella nanceiensis

ncbi_submitter: EMG


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Switzerland

ncbi_isolation_source: Cheese starter culture

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University of Lausanne


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: soil [ENVO:00001998]|soil organic matter [ENVO:04000008]|plant litter [ENVO:01000628]|plant matter [ENVO:01001121]

ncbi_organism_name: Streptomyces poriferorum

ncbi_submitter: DNASense ApS


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Hallella colorans


ncbi_country: China: Shantou

ncbi_isolation_source: ocean

ncbi_organism_name: Aquimarina sp. U1-2

ncbi_submitter: Shantou University


ncbi_organism_name: Lysobacter sp.

ncbi_submitter: University of South Africa


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Pseudomonas sp. Qb1D1

ncbi_submitter: LMU Munich


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: MN

ncbi_isolation_source: porcine pig intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Denmark: Haderslev

ncbi_isolation_source: activated sludge from Hade_18-Q3-R52-61

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ruijin Hospital


ncbi_organism_name: Dokdonella sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: Romania: Cekend

ncbi_isolation_source: landfill leachate-treating activated sludge bioreactor

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: ELTE Eotvos Lorand University


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Vreelandella aquamarina

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_organism_name: Dialister sp.

ncbi_submitter: UIUC


ncbi_assembly_name: Amazonia massiliensis

ncbi_isolate: human feces

ncbi_organism_name: bacterium MS4

ncbi_strain_identifiers: human feces

ncbi_submitter: URMITE


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Flavobacterium gyeonganense

ncbi_strain_identifiers: CECT 8365

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)