ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Marinobacter sp.

ncbi_submitter: EMG


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Japan

ncbi_genome_representation: full

ncbi_isolation_source: dental biofilm

ncbi_organism_name: Alloprevotella tannerae

ncbi_submitter: Health Sciences University of Hokkaido


ncbi_assembly_level: Scaffold

ncbi_country: Switzerland

ncbi_isolation_source: chicken cecum

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: ETH Zurich


ncbi_country: Italy

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Xenorhabdus koppenhoeferi

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Kingella kingae

ncbi_strain_identifiers: KahiriBlood

ncbi_submitter: University of Pennsylvania


ncbi_isolation_source: Nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: BGI-Shenzhen


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: sputum from cystic fibrosis patients

ncbi_organism_name: Achromobacter dolens

ncbi_submitter: Universidade do Estado do Rio de Janeiro


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0215R

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Micropruina glycogenica

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Xinjiang Agricultural University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Mitsuokella multacida


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: t

ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Marinoscillum sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Sphingobacteriia bacterium 28-36-52

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;x__unclassified Sphingobacteriia;s__Sphingobacteriia bacterium 28-36-52


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_level: Chromosome

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: BGI


ncbi_isolation_source: Ice-cream

ncbi_organism_name: Bacillus pacificus

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_assembly_name: Rumen uncultured genome RUG14937

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Vescimonas sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: freshwater MAG --- Umea2p3_bin-0208

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pedosphaera sp.

ncbi_submitter: BILS


ncbi_country: China: Jinhua

ncbi_organism_name: Escherichia coli

ncbi_submitter: Jinhua Central Hospital


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Nigeria

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Tunisia: Bad-saadoun

ncbi_isolation_source: Chicken meat

ncbi_submitter: Faculdade de Farmacia, Universidad do Porto


ncbi_organism_name: Oenococcus oeni

ncbi_submitter: UMR oenologie


ncbi_country: China

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: India

ncbi_isolation_source: Nosocomial

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada

ncbi_isolation_source: surface water

ncbi_organism_name: Campylobacter sp. TTU_617

ncbi_submitter: US Food and Drug Administration


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: sputum

ncbi_submitter: University of Pretoria


ncbi_country: USA: Pennsylvania; Pittsburgh

ncbi_isolation_source: lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_country: China: Jiangsu

ncbi_isolation_source: cloaca

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Russia

ncbi_isolation_source: 6th dilution order of 4-month-old decomposing straw

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: ARRIAM


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: South Africa

ncbi_isolation_source: water

ncbi_strain_identifiers: UPMP 2071


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: University of Michigan


ncbi_country: Russia: Republic of Buryatia

ncbi_isolation_source: coal

ncbi_organism_name: Caldanaerobacter subterraneus

ncbi_submitter: Research Center of Biotechnology


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Lysinibacillus louembei

ncbi_refseq_category: reference genome

ncbi_submitter: USDA-ARS


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom: Ipswich

ncbi_isolation_source: placenta

ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Cardiff University


ncbi_isolation_source: enrichment culture from gut homogenate

ncbi_organism_name: Gilliamella apicola

ncbi_submitter: University of Texas at Austin


ncbi_organism_name: Edwardsiella piscicida

ncbi_submitter: Mississippi State University


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_assembly_name: freshwater MAG --- AlinenSedimentsCore2_bin-2108

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: Streptomyces sp. NBC_01387

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Nocardia araoensis NBRC 100135

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of Chicago


ncbi_country: Chile: Region Metropolitana

ncbi_isolation_source: stools

ncbi_organism_name: Shigella sonnei

ncbi_submitter: Universidad de Chile


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: ZC4 (Zoo Composter number 4) at the Sao Paulo Zoo

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Instituto de Quimica


ncbi_isolation_source: hydrocarbon

ncbi_submitter: University of Queensland


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA: RI

ncbi_isolation_source: clinical

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. RI-11-013343


ncbi_country: Pakistan

ncbi_isolation_source: dairy Farm

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of microbiology University of Agriculture Faisalabad


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: Rectal

ncbi_submitter: Washington University


ncbi_submitter: VCU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Kinetoplastidibacterium;s__Candidatus Kinetoplastidibacterium stringomonadis;x__Candidatus Kinetoplastidibacterium stringomonadis TCC290E


ncbi_organism_name: Enterobacter cloacae complex sp. IR5462

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. IR5462


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium CG10_big_fil_rev_8_21_14_0_10_36_19


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Caldilineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: kidney

ncbi_organism_name: Leptospira santarosai serovar Bananal

ncbi_submitter: School of Veterinary Medicine and Animal Science / University of Sao Paulo


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medical Sciences


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Xanthomonas citri pv. fuscans

ncbi_submitter: Genoscope CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. fuscans


ncbi_organism_name: Marinovum algicola

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Shewanella morhuae

ncbi_strain_identifiers: ATCC BAA-1206

ncbi_submitter: Toho University


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Parolsenella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Switzerland

ncbi_isolation_source: feces

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: Pacific Ocean: Western North Pacific Station S

ncbi_isolation_source: seawater

ncbi_organism_name: Rubrivirga sp. SAORIC476

ncbi_submitter: Atmosphere and Ocean Research Institute, The University of Tokyo


ncbi_country: Colombia: Medellin

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Italy: Florence

ncbi_isolation_source: lesion swab

ncbi_submitter: University of Trento


ncbi_organism_name: uncultured Rhodoluna sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;x__Luna cluster;x__Luna-1 subcluster;g__Rhodoluna;x__environmental samples;s__uncultured Rhodoluna sp.


ncbi_country: China

ncbi_isolation_source: environmental swabs

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Kenya

ncbi_organism_name: Dietzia natronolimnaea

ncbi_submitter: Peking University


ncbi_country: USA: Georgia

ncbi_isolation_source: 4NP Lake Lanier Mesocosm I

ncbi_organism_name: Pseudomonas sp. KK4

ncbi_submitter: Georgia Institute of Technology


ncbi_genome_category: derived from single cell

ncbi_organism_name: alpha proteobacterium SCGC AAA240-E13

ncbi_strain_identifiers: SCGC AAA240-E13

ncbi_submitter: JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__unclassified Pelagibacteraceae;s__alpha proteobacterium SCGC AAA240-E13


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: AIMST University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: Escherichia coli

ncbi_submitter: King Abdulaziz University


ncbi_country: Japan

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: Yonsei University


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Coatesbacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Coatesiibacteriota;x__unclassified Candidatus Coatesbacteria;s__Candidatus Coatesbacteria bacterium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: USA: Mount Olive; NC

ncbi_isolation_source: cucumber fermentation brine

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: USDA-ARS


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_country: China: Beijing

ncbi_isolation_source: throat swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Bacteroides pyogenes

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acidithiobacillaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P119P

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Peribacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: USA: California

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Amrita Vishwa Vidyapeetham


ncbi_country: USA: Minnesota

ncbi_organism_name: Escherichia coli

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Castellaniella sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_assembly_name: freshwater MAG --- Kiruna3_bin-0605

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Bangladesh

ncbi_isolation_source: pond water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of maryland


ncbi_country: Norway

ncbi_isolation_source: meat processing facility

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: EMG


ncbi_country: South Africa: King George V Hospital; Durban

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0047

ncbi_submitter: Broad Institute


ncbi_isolation_source: environmental

ncbi_organism_name: Micromonospora sp. ATA32

ncbi_submitter: Kingston University London, United Kingdom


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: cheese

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_submitter: Universite Laval


ncbi_country: Pakistan

ncbi_isolation_source: alcohol foam dispenser in hospital intensive care unit

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Pacific Ocean

ncbi_isolation_source: marine sediment 2-8 meters below seafloor

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Delaware


ncbi_organism_name: Kiritimatiellales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy: d__Bacteria;p__Candidatus Omnitrophota;c__;o__;f__;g__Candidatus Sherwoodlollariibacterium;s__Candidatus Sherwoodlollariibacterium unditelluris

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;g__Candidatus Sherwoodlollariibacterium;s__Candidatus Sherwoodlollariibacterium unditelluris


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: sputum

ncbi_submitter: GUANGZHOU CDC,China


ncbi_organism_name: Legionellaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Institute of Microbiology


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Spain: Palma de Mallorca

ncbi_isolation_source: Ileon biopsy

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad de Chile


ncbi_assembly_name: Rumen uncultured genome RUG272

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Netherlands

ncbi_isolation_source: infant

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University College Cork


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Wyoming


ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Thermodesulfovibrio sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


gtdb_type_species_of_genus: t

ncbi_isolation_source: host stool sample

ncbi_organism_name: Timonella senegalensis JC301

ncbi_submitter: URMITE CNRS UMR 6236 IRD 198

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;x__Micrococcales incertae sedis;g__Timonella;s__Timonella senegalensis;x__Timonella senegalensis JC301


ncbi_country: USA: New York City

ncbi_isolation_source: respiratory sample from patients who developed COVID-19 within the first three months of the pandemic in New York City

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Columbia University Medical Center


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas sp. AU8050

ncbi_submitter: University of Michigan


ncbi_country: Argentina: Buenos Aires

ncbi_submitter: Universidad de Buenos Aires, CONICET

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: freshwater MAG --- MJ110629A_bin-102

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University of Lausanne


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Hong Kong

ncbi_isolation_source: in lab

ncbi_submitter: The Hong Kong University of Science and Technology


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: France: Haute Savoie region; French Alps

ncbi_organism_name: Mycoplasma feriruminatoris

ncbi_submitter: INRAE Univ Bordeaux


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Tongji University


ncbi_submitter: Linnaeus University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: National Centre for Infectious Diseases


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: KP-NII

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: uncultured Chloroherpeton sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Candidatus Planktophila sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__environmental samples;s__uncultured Candidatus Planktophila sp.


ncbi_organism_name: Candidatus Brennerbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Brenneribacteriota;x__unclassified Candidatus Brennerbacteria;s__Candidatus Brennerbacteria bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Ruminococcus callidus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Jiangsu Academy of Agricultural Sciences


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of South Africa


ncbi_organism_name: uncultured Phycisphaerae bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Phycisphaerae;x__environmental samples;s__uncultured Phycisphaerae bacterium


ncbi_organism_name: uncultured Acidimicrobiales bacterium


ncbi_organism_name: Segatella copri


ncbi_organism_name: uncultured Phycisphaera sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Sarcina ventriculi

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolate: AOP14_E2_surf _bin _1

ncbi_organism_name: Enterococcus malodoratus

ncbi_strain_identifiers: AOP14_E2_surf _bin _1

ncbi_submitter: Genoscope


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-2870

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: France

ncbi_isolation_source: Pharynx

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Liaoning

ncbi_isolation_source: saline estuarine water

ncbi_organism_name: Paraliobacillus salinarum

ncbi_submitter: CAU(China Agricultural University)


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_country: Germany

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Parapedobacter pyrenivorans

ncbi_submitter: Max Planck Institute for Biology


ncbi_country: Southern Ocean

ncbi_isolation_source: marine sediment

ncbi_organism_name: Pseudonocardia oceani

ncbi_submitter: University of Strathclyde


ncbi_country: South Korea: Seoul

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Yonsei University


ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Geogentics


ncbi_assembly_name: Rumen uncultured genome RUG13242

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Tsinghua University


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chthoniobacter flavus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: metagenome

ncbi_organism_name: Limosilactobacillus vaginalis


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Switzerland

ncbi_isolation_source: Deep Tissue

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Basel


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces caniscabiei

ncbi_submitter: Oregon State University


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Novosphingobium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: China: Anhui; Wuhu

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Pleural cavity

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: SurvCARE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: stool from botulism patient

ncbi_organism_name: Clostridium baratii

ncbi_submitter: Institut Pasteur


ncbi_country: USA

ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Klebsiella sp. 119590

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: France: Arcueil

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_country: USA: California

ncbi_isolation_source: feces

ncbi_submitter: University of California Irvine


ncbi_country: Uganda

ncbi_isolation_source: Ventricular cerebrospinal fluid

ncbi_organism_name: Paenibacillus thiaminolyticus

ncbi_strain_identifiers: Mbale

ncbi_submitter: Penn State College of Medicine


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Hangzhou

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Tsinghua University


ncbi_assembly_name: PMEN

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Nocardia abscessus

ncbi_submitter: Chinese PLA Center for Disease Control and Prevention


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Proteobacteria bacterium UBA2996

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA2996


ncbi_country: China:Shen Zhen

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus UCIM6057

ncbi_submitter: Broad Institute


ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: Nimes University Hospital


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_country: Spain: Madrid

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_country: Guadeloupe: Pointe de la Grande Vigie; Guadeloupe; France

ncbi_isolation_source: termite gut

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: blood culture

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Heidelberg University Hospital


ncbi_isolation_source: Other

ncbi_strain_identifiers: MRSA


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: environment; food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Texas Tech University


ncbi_organism_name: Miltoncostaeaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Czech Republic

ncbi_isolation_source: water

ncbi_organism_name: Mycobacterium kansasii

ncbi_submitter: University of Lodz


ncbi_organism_name: Candidatus Dorea faecigallinarum

ncbi_submitter: Quadram Institutte


ncbi_country: China: Heilongjiang

ncbi_organism_name: Escherichia coli


ncbi_organism_name: Lysinibacillus sp. FSL M8-0337

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Lysinibacillus;x__unclassified Lysinibacillus;s__Lysinibacillus sp. FSL M8-0337


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Aquatic

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: University of Pennsylvania


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Frankiales bacterium

ncbi_submitter: Colorado State University


ncbi_assembly_name: IMG-taxon 2667527235 annotated assembly

ncbi_organism_name: Pseudomonas sihuiensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: feces collected from manure pit

ncbi_submitter: USDA


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: EMG


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG11904

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Catenibacterium sp. AM22-15

ncbi_submitter: BGI


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Chicago


ncbi_country: Russia: Baikal Lake region; Siberia

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium betae

ncbi_submitter: ARRIAM


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Pedosphaera sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: Actinomyces graevenitzii

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases


ncbi_country: Brazil: Minas Gerais state

ncbi_isolation_source: wound

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: blood

ncbi_submitter: Facultad de Bioquimica y Cs. Biologicas - Universidad Nacional del Litoral

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_assembly_name: Rumen uncultured genome RUG10791

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: China

ncbi_isolation_source: mesophilic anaerobic digestion

ncbi_organism_name: Enterococcus durans

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolate: metabat2_coassembly_bwa.535 MAG

ncbi_strain_identifiers: metabat2_coassembly_bwa.535 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Acetatifactor sp.

ncbi_submitter: INRA


ncbi_country: USA: TN

ncbi_isolation_source: Pork Chop

ncbi_submitter: FDA


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Toe web space swab

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_assembly_name: freshwater MAG --- Ki3-D3_bin-0786

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium AM46-1BH

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Zurich


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Leyella stercorea

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Australia: Magnetic Island; QLD

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: University of Queensland


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Flavonifractor sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Bulgaria

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: SC


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus


ncbi_country: United Kingdom

ncbi_isolation_source: faeces

ncbi_organism_name: Turicibacter sanguinis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Autonoma de Sinaloa


ncbi_submitter: China Agricultural University


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: China: Suzhou

ncbi_isolation_source: feces

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis;x__Mycobacterium tuberculosis variant bovis BCG


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


ncbi_country: Canada: Lake Hazen

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: University of Ottawa


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Acidiphilium sp. 34-60-192


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Halobacteriovoraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Capnocytophaga gingivalis

ncbi_submitter: EMG


ncbi_country: Russia

ncbi_isolation_source: obtained in laboratory by selection from a strain isolated from a natural source

ncbi_organism_name: Brevibacillus laterosporus

ncbi_submitter: National Research Center "Kurchatov Institute"


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Russia: Samara

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: USA: Florida Reef Tract near Ft Lauderdale

ncbi_isolation_source: coral surface mucus layer from newly infected colony LG

ncbi_organism_name: Tepidibacter sp.

ncbi_submitter: University of Florida


ncbi_assembly_name: freshwater MAG --- Umea2_bin-0712

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core A

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Germany

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: stool

ncbi_submitter: Pathogenomics Lab/LAU


ncbi_country: India

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Austria

ncbi_isolation_source: Sausage from Russia

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Iowa State University


ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Cellvibrionales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Rhizobiales bacterium TMED25

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: University of Chicago


ncbi_country: USA

ncbi_organism_name: Enterobacter hormaechei


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_submitter: University of Jyvaskyla


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: UZ Brussel


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter lanienae

ncbi_submitter: University of Aberdeen


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: United Kingdom: Liverpool

ncbi_isolation_source: Intestinal Cancer

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: USA: Jasper Ridge Biological Preserve; Stanford (California)

ncbi_isolation_source: PO:0025082 | flower nectar

ncbi_organism_name: Acinetobacter pollinis

ncbi_submitter: Cornell University


ncbi_country: Saudi Arabia: Riyadh

ncbi_isolation_source: maxillary sinus lavage

ncbi_organism_name: Mycobacterium riyadhense

ncbi_submitter: University of Trento


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_assembly_name: R16E Medusa

ncbi_organism_name: Methylobacterium fujisawaense

ncbi_submitter: Instituto de Quimica


ncbi_country: China: Huizhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_submitter: Peking University People's Hospital


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Northeastern University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Rectal swab

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_country: Australia: Five Islands

ncbi_organism_name: Escherichia coli

ncbi_submitter: OUTBREAK


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_isolation_source: North Atlantic

ncbi_organism_name: Maribacter sp. PR1

ncbi_submitter: Shantou University


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Streptococcus constellatus

ncbi_submitter: Loyola University Chicago


ncbi_country: South Korea: Jeju Island

ncbi_isolation_source: soil from cave

ncbi_organism_name: Streptacidiphilus jeojiense

ncbi_submitter: University of Illinois


ncbi_organism_name: Citrobacter sp.

ncbi_submitter: China Agricultural University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Succinatimonas sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_country: Belarus: Gomel

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: Northumbria University


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: Uterus

ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Cardiff University


ncbi_country: USA

ncbi_isolation_source: sputum from CF patient

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: University of Michigan


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Ilumatobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Candidatus Korobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;x__unclassified Candidatus Korobacteraceae;s__Candidatus Korobacteraceae bacterium


ncbi_organism_name: Microbacterium barkeri

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Hyphomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Emergencia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_organism_name: Alcaligenes sp. SJTW-7

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Ruthenibacterium lactatiformans


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Vestfold Hospital Trust


ncbi_isolation_source: marine metagenome


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Kyoto University


ncbi_organism_name: Bacteroides stercoris


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Flavipsychrobacter sp.


ncbi_organism_name: uncultured Luteitalea sp.


ncbi_organism_name: Parasutterella excrementihominis


ncbi_organism_name: Bacteroides salyersiae


ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_organism_name: Shewanella waksmanii

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Acinetobacter dispersus

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Rhodopirellula sp. JB044

ncbi_submitter: JNTUH


ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Bacteroides caccae


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_organism_name: uncultured bacterium


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium


ncbi_country: Australia: Great Barrier Reef

ncbi_submitter: University of Queensland


ncbi_organism_name: Trebonia sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_organism_name: Thiolapillus sp.


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Joint Microbiome Facility

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediments

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Ocean University of China - Yushan Campus


ncbi_country: Israel: Tel-Hashomer

ncbi_submitter: Sheba Medical Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Sulfurimonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Coprococcus eutactus

ncbi_submitter: University of Chicago


ncbi_organism_name: Stenotrophomonas hibiscicola

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of California Riverside


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universidade Federal de Vicosa


ncbi_assembly_name: freshwater MAG --- Loclat_bin-18389

ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_country: Canada: Toronto

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_isolate: clinical

ncbi_isolation_source: clinical

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: clinical

ncbi_submitter: Faculty of Health Sciences


ncbi_country: China: Hangzhou

ncbi_isolation_source: secreta

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_isolation_source: catheter tip

ncbi_organism_name: Acinetobacter baumannii


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: General University Hospital of Patras


ncbi_country: China: Sichuan

ncbi_isolation_source: Anal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacillus subtilis HJ5

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;x__Bacillus subtilis HJ5


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Halanaerobiaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides congonensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: foodproduct with ingredients from different origins

ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01318

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01318


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: Pork Chop

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hindmarsh


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Italy: PA Bolzano

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Azienda Sanitaria dell'Alto Adige


ncbi_country: Japan

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_submitter: Swansea University


ncbi_country: USA: Boston; MA

ncbi_isolation_source: hip joint fluid

ncbi_organism_name: Staphylococcus aureus M0373

ncbi_submitter: Broad Institute


ncbi_organism_name: Porphyromonadaceae bacterium UBA3321

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Candidatus Onthoplasma sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Christensenellales;f__Christensenellaceae;x__Christensenellaceae incertae sedis;g__Candidatus Onthoplasma;x__unclassified Candidatus Onthoplasma;s__Candidatus Onthoplasma sp.


ncbi_country: Spain

ncbi_isolation_source: Medical

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto de Investigacion Sanitaria y Biomedica de Alicante


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Taiwan: Taizhong

ncbi_isolation_source: activated sludge from Wenshan wastewater treatment plant

ncbi_organism_name: Candidatus Brocadia sp. WS118

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;x__unclassified Candidatus Brocadia;s__Candidatus Brocadia sp. WS118


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Evtepia gabavorous

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: BGI-Shenzhen


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UNIVERSITY OF MELBOURNE


ncbi_organism_name: Gottfriedia acidiceleris

ncbi_submitter: Auburn University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Poland: Wolomin

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


ncbi_country: Australia

ncbi_submitter: The ithree institute


ncbi_organism_name: Gallibacterium anatis

ncbi_submitter: Clinic for Poultry and Fish Medicine - Vetmeduni Vienna


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: Michigan

ncbi_organism_name: Arthrobacter sp. PvP103

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: DTU


ncbi_organism_name: Aeromicrobium massiliense


ncbi_country: Guatemala

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Duke University


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Acidovorax sp. Root219

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_isolate: AOP31_C2_surf _bin _3

ncbi_organism_name: Lactococcus lactis

ncbi_strain_identifiers: AOP31_C2_surf _bin _3

ncbi_submitter: Genoscope


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Priestia megaterium


ncbi_organism_name: Corynebacterium sp. LK2521

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Switzerland

ncbi_isolation_source: calf box

ncbi_submitter: University of Bern


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Methylovirgula sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: USA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Johns Hopkins Bloomberg School of Public Health


ncbi_country: China: Malan

ncbi_organism_name: Janibacter melonis

ncbi_submitter: BGI-Qingdao


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: China: Jiangsu; Nanjing

ncbi_isolation_source: catheter

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: USA: Alaska

ncbi_isolation_source: tissue

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Australia: Melbourne

ncbi_isolation_source: urine

ncbi_submitter: Monash University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Chicago

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Intestinimonas;s__Intestinimonas massiliensis (ex Afouda et al. 2020)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T35596

ncbi_submitter: Broad Institute


ncbi_country: South Korea

ncbi_organism_name: Paenibacillus sp. DR312

ncbi_submitter: Yonsei University


ncbi_isolation_source: fresh water

ncbi_organism_name: Lysinibacter sp. HNR

ncbi_strain_identifiers: HNR

ncbi_submitter: Wonkwang University


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Streptomyces sp. NPDC048001

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Lebanon

ncbi_submitter: Lebanese American University


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: PCMD, ICCBS, university of Karachi, Pakistan


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert sheltered soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: CAU


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Antarctica

ncbi_organism_name: Aneurinibacillus terranovensis DSM 18919

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: University of Sao Paulo


ncbi_country: USA: Starkville; MS

ncbi_isolation_source: activated sludge biosolids

ncbi_organism_name: Chloracidobacterium sp. UBA3360

ncbi_submitter: University of Queensland


ncbi_country: Thailand

ncbi_isolation_source: rhizosphere soil of turmeric

ncbi_organism_name: Streptomyces sp. TM32

ncbi_submitter: University of Glasgow


ncbi_organism_name: Streptomyces tanashiensis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:Wales

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Streptomyces tuirus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: Stanford University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Durham; NH

ncbi_isolation_source: root nodules

ncbi_organism_name: Nocardia sp. alder85J

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Pirellula sp.

ncbi_submitter: University of Michigan


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Candidatus Fervidibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Fervidibacterota;g__Candidatus Fervidibacter;x__unclassified Candidatus Fervidibacter;s__Candidatus Fervidibacter sp.


ncbi_country: Panama: Gamboa

ncbi_organism_name: Pseudonocardia sp. Ae356_Ps1

ncbi_submitter: University of East Anglia


ncbi_country: Nigeria

ncbi_organism_name: Escherichia coli

ncbi_submitter: Igbinedion University Okada Edo state Nigeria


ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas sp. NPDC087817

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: China

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: jiangnan


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11376

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Erysipelotrichia bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: USA

ncbi_submitter: JMI Laboratories


ncbi_organism_name: Alistipes indistinctus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_isolation_source: glabella

ncbi_organism_name: Staphylococcus epidermidis NIHLM037

ncbi_submitter: NISC - NIH Intramural Sequencing Center


ncbi_organism_name: uncultured Methylobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_organism_name: Streptomyces sp. NPDC057027


ncbi_organism_name: Pseudonocardia sp.

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Calgary


ncbi_assembly_name: Rumen uncultured genome RUG10739

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: degraded pasture

ncbi_organism_name: Nesterenkonia haasae

ncbi_submitter: Heilongjiang Academy of Agricultural Sciences


ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium adolescentis


ncbi_country: Norway: West coast; Beach

ncbi_isolation_source: Plastic

ncbi_organism_name: Acinetobacter beijerinckii

ncbi_submitter: Institute of Marine research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1641 from squamous cell carcinomas patient MST029

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Queensland


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 5.5 m monimolimnion layer of meromictic lake

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Academia Sinica


ncbi_organism_name: Pantoea septica


ncbi_country: Germany

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis;sb__Francisella tularensis subsp. holarctica;x__Francisella tularensis subsp. holarctica 257


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Boston; MA

ncbi_isolation_source: abscess

ncbi_organism_name: Staphylococcus aureus M0895


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Greene County; Ohio

ncbi_isolation_source: groundwater well (0.1 _m fraction)

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium Gr01-1014_33


ncbi_country: South Korea: Pohang

ncbi_isolation_source: seawater

ncbi_organism_name: Maribacter sp. MJ134

ncbi_submitter: National Marine Biodiversity Institute of Korea


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Flathead Lake; MT

ncbi_isolation_source: lake water; P+N+C amendment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Montana


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China


ncbi_organism_name: Pseudomonas sp. IT-P4

ncbi_submitter: faculty of agriculture, university of belgrade


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Universidad del Pais Vaso/Euskal Herriko Unibertsitatea (UPV/EHU)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Streptomyces mutabilis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Candidatus Scatomorpha sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;x__unclassified Candidatus Scatomorpha;s__Candidatus Scatomorpha sp.


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: uncultured Phenylobacterium sp.

ncbi_submitter: EMG


ncbi_country: China: Qinghua

ncbi_isolation_source: crude oil

ncbi_organism_name: Firmicutes bacterium UBA1874

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA1874


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Quadram Institutte


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: Switzerland

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_organism_name: Prochlorococcus marinus

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Jiliang University


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Castellaniella denitrificans

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: marine metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__environmental samples;s__uncultured candidate division Zixibacteria bacterium


ncbi_organism_name: Bacillus sonorensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_country: USA

ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_submitter: Lund University


ncbi_submitter: FDA-CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_organism_name: Heyndrickxia faecalis

ncbi_submitter: Brigham Young University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Neisseria cinerea ATCC 14685

ncbi_submitter: Washington University Genome Sequencing Center


ncbi_organism_name: Alistipes sp. dk3624

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: India: Assam

ncbi_isolation_source: hospital patient

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lentisphaeraceae bacterium

ncbi_submitter: EMG


ncbi_country: France

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Spain: Santander

ncbi_isolation_source: Cabrales cheese

ncbi_organism_name: Tetragenococcus koreensis

ncbi_submitter: Institute of Biomedicine and Biotechnology of Cantabria (IBBTEC), Intergenomics group


ncbi_country: South Korea: Seoul

ncbi_isolation_source: infant feces

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Wonkwang University


ncbi_country: Netherlands: Wageningen

ncbi_isolation_source: Decaying wood

ncbi_organism_name: Streptacidiphilus sp. PB12-B1b

ncbi_submitter: Netherlands Institute of Ecology (NIOO-KNAW)


ncbi_country: Spain: Salamanca

ncbi_organism_name: Rhizobium sp. PEPV16

ncbi_submitter: Universidad de Salamanca


ncbi_country: Argentina

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Neisseria sp. P0017.S003

ncbi_submitter: Rochester Institute of Technology


ncbi_country: China

ncbi_isolation_source: nose

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: United Kingdom:England

ncbi_organism_name: Serratia marcescens


ncbi_country: China: Sichuan

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Janthinobacterium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_country: Atlantic Ocean

ncbi_isolation_source: Atlantis Massif Sediment

ncbi_submitter: Bigelow Laboratory For Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Nitrospinota/Tectimicrobiota group;p__Nitrospinota;x__unclassified Nitrospinota;s__Nitrospinae bacterium AH_259_B05_G02_I21


ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Oligella urethralis


ncbi_country: Sri Lanka: Galagadera

ncbi_isolation_source: banana rhizosphere

ncbi_organism_name: Pseudomonas bananamidigenes

ncbi_submitter: University of California San Diego, Dorrestein Lab


ncbi_country: South Africa: Mbombela

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp. P17.1

ncbi_submitter: University of Pretoria


ncbi_organism_name: uncultured Planktosalinus sp.


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_organism_name: Raoultella terrigena

ncbi_submitter: University of the West of England


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas sp. 5C2

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 5 / E; 5m depth; 0.2 filter

ncbi_organism_name: Bacteroidetes bacterium GWE2_39_28

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium GWE2_39_28


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Firmicutes bacterium UBA4891

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA4891


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Pedobacter faecalis

ncbi_submitter: Korea University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: unknown


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Adlercreutzia sp.

ncbi_submitter: EBI


ncbi_country: Germany

ncbi_isolation_source: flour/flour products

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Ares Genetics


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter;s__Helicobacter cinaedi;x__Helicobacter cinaedi CCUG 18818 = ATCC BAA-847


ncbi_organism_name: Pseudomonas bubulae

ncbi_submitter: Cornell University


ncbi_country: Canada: Ontario

ncbi_isolation_source: dairy cattle manure digester

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: JPIAMR ARMIS


ncbi_organism_name: Streptomyces sp. NPDC088357

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Bacillaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: lake water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Hefei

ncbi_isolation_source: swine

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Sichuan University


ncbi_country: Nigeria: Igboukwu

ncbi_isolation_source: sold in market

ncbi_organism_name: Citrobacter portucalensis

ncbi_strain_identifiers: Igbk 12

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0657


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: Alashian region of the Inner Mongolia autonomous region

ncbi_submitter: URMITE CNRS UMR 6236 IRD 198

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;x__Rickettsia sibirica subgroup;s__Rickettsia sibirica;sb__Rickettsia sibirica subsp. mongolitimonae;x__Rickettsia sibirica subsp. mongolitimonae HA-91


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Spain

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hospital Ramon y Cajal


ncbi_country: USA: Chapel Hill

ncbi_isolation_source: intestine

ncbi_organism_name: Comamonas testosteroni ZNC0007

ncbi_submitter: University of Oregon


ncbi_organism_name: Methylobacterium gnaphalii

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Nigeria: Lagos

ncbi_isolation_source: water from electronic waste dumpsite

ncbi_submitter: University of Ibadan, Nigeria


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Longicatena caecimuris

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: feces

ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mutans TCI-70

ncbi_submitter: JCVI


ncbi_organism_name: Parapedobacter defluvii

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_strain_identifiers: MKDF 10

ncbi_submitter: NATIONAL VETERINARY RESEARCH INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 6,7:c:-


ncbi_country: Brazil: Petrolina

ncbi_isolation_source: kidney

ncbi_organism_name: Aeromonas jandaei

ncbi_submitter: UFMG


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine benthic water

ncbi_organism_name: Cyclobacterium marinum

ncbi_strain_identifiers: Atlantic-IS

ncbi_submitter: Hampton University


ncbi_country: Russia: Nizhny Novgorod

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Micr


ncbi_organism_name: Xanthomonas oryzae pv. oryzicola

ncbi_submitter: Cornell University


ncbi_country: Australia: Melbourne

ncbi_isolation_source: laboratory-created transinfected host line (F7)

ncbi_organism_name: Wolbachia pipientis

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Streptococcus suis YS44

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: EMG


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium