ncbi_country: South Africa: Cape Recife

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Acaryochloris sp. RU_4_1

ncbi_submitter: University of Wisconsin, Madison


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_genome_representation: full

ncbi_organism_name: Epilithonimonas sp. UC225_85

ncbi_submitter: The Connecticut Agricultural Experiment Station


gtdb_representative: f

ncbi_assembly_level: Scaffold

ncbi_organism_name: Herbaspirillum seropedicae

ncbi_submitter: Tongji University School of Medicine


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: lake water

ncbi_organism_name: Flavipsychrobacter stenotrophus

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: Distal colon

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Contig

ncbi_organism_name: Agrobacterium fabrum

ncbi_submitter: University of Lausanne


ncbi_country: USA: Greensboro; North Carolina

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. gb1(2016)

ncbi_submitter: Cornell University


ncbi_country: Japan: Tokyo

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Tokyo Hospital


ncbi_country: Germany: Erlangen

ncbi_isolation_source: perianal skin [UBERON:0012336]

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Universitaetsklinikum Erlangen


ncbi_country: Philippines: Philippine Rise

ncbi_isolation_source: marine sediment

ncbi_organism_name: Vibrio owensii

ncbi_submitter: University of the Philippines Los Banos


ncbi_country: Ghana: Korle Bu

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Noguchi Memorial Institute for Medical Research, University of Ghana


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Washington


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_country: South Korea

ncbi_isolation_source: marine red alga

ncbi_organism_name: Marinicauda algicola

ncbi_submitter: Shandong University

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA

ncbi_isolation_source: Wound

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_country: Kenya: Kakamega

ncbi_isolation_source: pus fluid

ncbi_submitter: MASINDE MULIRO UNIVERSITY OF SCIENCE AND TECHNOLOGY


ncbi_organism_name: Calditrichota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: Freie Universitat Berlin


ncbi_organism_name: Shewanella algae

ncbi_submitter: Yangzhou University


ncbi_organism_name: Actinoplanes sp. G11-F43

ncbi_submitter: Zhongshan Institute for Drug Discovery, Shanghai institute of Materia Medica


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of East Anglia


ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces sp. enrichment culture

ncbi_submitter: Swiss Institute of Bioinformatics, Switzerland


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: SRCAMB


ncbi_organism_name: Pseudomonas helleri

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Odoribacter splanchnicus


ncbi_submitter: Spribille Lab


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Streptomyces sp. NPDC087317


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Escuela Superior Politecnica del Litoral


ncbi_assembly_level: Chromosome

ncbi_organism_name: Candidatus Poriferisocius sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Candidatus Hopanoidivoransaceae;g__Candidatus Poriferisocius;x__unclassified Candidatus Poriferisocius;s__Candidatus Poriferisocius sp.


ncbi_submitter: Nanjing University


ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: CIRAD


ncbi_organism_name: Escherichia coli

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: DS-I Africa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_submitter: University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: Canada: Albert

ncbi_isolation_source: Dinosaur fossil bone

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Princeton University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Mariner hydrothermal plume 25m

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_submitter: Sun Yat sen University


ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Pseudomonas sp. 1P02AnB

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_submitter: Federal University of Minas Gerais

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Succinivibrio sp.


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China

ncbi_isolation_source: anal swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Salmonella sp. M220

ncbi_submitter: Zhejiang University


ncbi_country: Norway: Aas

ncbi_isolation_source: Gut

ncbi_organism_name: Gilliamella apicola

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_organism_name: Geothrix sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Chongqing

ncbi_isolation_source: hospital sewage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Third Military Medical University


ncbi_country: China: Taiwan;Kueishan Island

ncbi_isolation_source: hydrothermal vent sediment

ncbi_organism_name: Thiotrichales bacterium

ncbi_submitter: Shanghai Ocean University


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Klebsiella pasteurii

ncbi_submitter: Institut Pasteur


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: Italy

ncbi_isolation_source: cutaneus swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: Ireland

ncbi_isolation_source: seafood factory FBO4

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National University of Ireland, Galway


ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Zurich


ncbi_country: Norway

ncbi_isolation_source: environmental

ncbi_submitter: Nofima


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: human

ncbi_organism_name: Caballeronia turbans

ncbi_submitter: LM-UGent


ncbi_isolation_source: rye-bran sourdough

ncbi_organism_name: Limosilactobacillus frumenti

ncbi_refseq_category: reference genome

ncbi_submitter: Korea University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Cote d Ivoire

ncbi_isolation_source: fermented cassava

ncbi_organism_name: Periweissella beninensis

ncbi_submitter: Brigham Young University


ncbi_country: USA

ncbi_isolation_source: Stool

ncbi_submitter: CDC


ncbi_country: Brazil:Santa Catarina; Florianopolis

ncbi_isolation_source: blood

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 2 10 to 15cm

ncbi_organism_name: Sedimenticola sp.

ncbi_submitter: Northeastern University


ncbi_country: Oman

ncbi_submitter: Sultan Qaboos University


ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: Blood culture

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: CHUV-UNIL


ncbi_assembly_name: Rumen uncultured genome RUG12735

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Ft Pierce; Florida; citrus grove

ncbi_organism_name: Acinetobacter sp. NRRL B-65365

ncbi_submitter: NCAUR-ARS-USDA


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Weissella paramesenteroides


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom:Hertfordshire

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Vreelandella venusta

ncbi_submitter: Pondicherry University


ncbi_organism_name: Dialister hominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Atlanta; Georgia

ncbi_isolation_source: Soil from a creek bank

ncbi_organism_name: Fluoribacter gormanii

ncbi_submitter: Tel Aviv University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Chlamydia gallinacea

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Liaocheng University


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Enterococcus raffinosus

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: China

ncbi_isolation_source: Environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Acididesulfobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acididesulfobacter;x__unclassified Candidatus Acididesulfobacter;s__Candidatus Acididesulfobacter sp.


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: Brucella melitensis

ncbi_submitter: University of Queensland


ncbi_isolation_source: Gut

ncbi_organism_name: Gilliamella apicola

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_assembly_name: freshwater MAG --- Umea1p3_bin-439

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_organism_name: uncultured Rhizobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Kordiimonas sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Comamonas thiooxydans

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: USA: TX

ncbi_isolation_source: canine feces

ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Texas Tech University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Acidaminococcus fermentans

ncbi_submitter: EMG


ncbi_organism_name: Burkholderia sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Mesorhizobium sp. M0757

ncbi_submitter: Washington State University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Chicago


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_submitter: Clemson University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp.


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Eubacteriaceae bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Wenzhou

ncbi_isolation_source: Pus

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: wenzhou medical university


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: household surface

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Colombia

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas phaseoli;x__Xanthomonas phaseoli pv. manihotis;x__Xanthomonas phaseoli pv. manihotis str. CIO151


ncbi_country: Bangladesh

ncbi_organism_name: Escherichia coli P0301867.2

ncbi_submitter: IGS


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong University


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: PA

ncbi_isolation_source: colon (Equus ferus caballus)

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_organism_name: Pseudomonas sp. M2

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Zhejiang University


ncbi_organism_name: Actinobacillus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Herbaspirillum sp.


gtdb_type_species_of_genus: t

ncbi_organism_name: Yeosuana aromativorans

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Limnospira sp. PMC 1223.20

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_submitter: Ausgem


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: uncultured Haemophilus sp.

ncbi_submitter: EMG


ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: SRCAMB


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus sp. 31

ncbi_submitter: Centre of Biotechnology of Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 31


ncbi_country: China: Qinghai-Tibet Plateau

ncbi_isolation_source: feces from Tibet wild ass

ncbi_organism_name: Arthrobacter yangruifuii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Hafnia alvei ATCC 13337

ncbi_submitter: University of Malaya

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Hafniaceae;g__Hafnia;s__Hafnia alvei;x__Hafnia alvei ATCC 13337


ncbi_assembly_name: Rumen uncultured genome RUG13454

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: from ATCC 14067 by mutation breeding

ncbi_organism_name: Corynebacterium glutamicum

ncbi_submitter: Shanghai Institutes for Biological Sciences (SIBS) of Chinese Academy of Sciences (CAS)


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: University of Antioquia


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: water smple

ncbi_organism_name: Flagellimonas abyssi

ncbi_submitter: Shanghai Ocean University


ncbi_organism_name: Leclercia adecarboxylata


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Nigeria

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: human gut


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: WA

ncbi_isolation_source: celebe ape (Macaca nigra)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Mali: Koulikoro

ncbi_isolation_source: stool sample

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_organism_name: Paranoxybacillus vitaminiphilus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Prevotellamassilia timonensis


ncbi_submitter: Max von Pettenkofer-Institut

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;s__Yersinia enterocolitica;sb__Yersinia enterocolitica subsp. palearctica;x__Yersinia enterocolitica subsp. palearctica YE-149


ncbi_country: Ghana: Accra

ncbi_isolation_source: Rectal swabs

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Streptomyces salinarius

ncbi_submitter: D.K.M. College for Women (Autonomous)


ncbi_country: USA

ncbi_isolation_source: PLEURAL FLUID

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: India: New Delhi

ncbi_isolation_source: stool from 1 year old male with acute diarrhea

ncbi_submitter: Maulana Azad Medical College


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Succinivibrio sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_organism_name: Mycolicibacter algericus

ncbi_submitter: Department of Infection Metagenomics, Osaka University


ncbi_organism_name: Pseudomonas iridis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Equipe PHySE - HydroSciences Montpellier


ncbi_country: Ecuador: Borbon

ncbi_isolation_source: human stool

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_organism_name: Neisseria bergeri

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_country: Norway: Bergen

ncbi_isolation_source: wastewater

ncbi_submitter: Institute of Marine research


ncbi_organism_name: Hydrocarboniphaga effusa AP103

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_organism_name: Streptomyces nigra


ncbi_country: Netherlands

ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Pseudomonas gingeri

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Elusimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: uncultured Dehalococcoidales bacterium


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Lysobacter sp. Root559

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Norway

ncbi_isolation_source: arctic rhizosphere

ncbi_organism_name: Microbacterium sp. 3H14

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Escherichia coli

ncbi_submitter: MRSN BI Team


ncbi_country: Norway: Svalbard; pond near Longyearbyen

ncbi_isolation_source: pond water

ncbi_organism_name: Polynucleobacter arcticus

ncbi_submitter: University of Innsbruck


ncbi_organism_name: Terricaulis sp.

ncbi_submitter: University of California Davis


ncbi_organism_name: Gluconobacter kanchanaburiensis NBRC 103587

ncbi_submitter: Tokyo University of Agriculture


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Germany

ncbi_organism_name: Thermomonas fusca DSM 15424

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese center for disease control and prevention


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Paenibacillus xylanexedens

ncbi_submitter: BGI


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Tsukamurella sp. DT100

ncbi_submitter: University of Liege


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces lavendulae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudonocardia sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Intestinibacter bartlettii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces sp. NPDC050421


ncbi_organism_name: Minisyncoccota bacterium


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Acidobacteriota bacterium


ncbi_organism_name: Oceanihabitans sediminis

ncbi_submitter: Ocean University of China


ncbi_submitter: The First Affiliated Hospital, Jiangxi Medical College, Nanchang University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Mesorhizobium sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Psychrobacter sp. 364

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Streptomyces sp. NPDC056352


ncbi_organism_name: Lonsdalea quercina


ncbi_organism_name: uncultured Spirochaetales bacterium


ncbi_isolation_source: lake water

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Enterococcus lactis

ncbi_strain_identifiers: NB2A 1_CNA_aer


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Actinotignum sp. GS-2025e

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Microcella sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Chile: Yungay; Atacama Desert

ncbi_isolate: ATA bin20

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: ATA bin20


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_country: Saudi Arabia: Thuwal; RO plant located on Red Sea

ncbi_isolation_source: biofilm from MA_RO membrane3

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured bacterium


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus F42582

ncbi_submitter: Broad Institute


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: Paramuribaculum intestinale


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Peptoniphilus sp.

ncbi_submitter: EBI


ncbi_country: Thailand:Khon Kaen-NE

ncbi_isolation_source: diseased fish

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Laboratory of Genome Science, Graduate School of Marine Science and Technology, Tokyo University of Marine Science and Technology


ncbi_organism_name: Kocuria marina subsp. indica

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Kocuria;s__Kocuria marina;sb__Kocuria marina subsp. indica


ncbi_isolation_source: Sponge: Aplysina aerophoba

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: Devosia sp.


ncbi_country: Indonesia: Cemoro sewu Dieng plateau

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Streptomyces sp. CRB46

ncbi_submitter: Universitas Gadjah Mada


ncbi_assembly_name: uncultured Cand. Thioglobaceae LS07H_Bin3

ncbi_isolation_source: Octocoral

ncbi_submitter: iBB-IST


ncbi_organism_name: Mycoplasmopsis felifaucium ATCC 43428

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Polyangiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: Hengyang

ncbi_isolation_source: Liver puncture

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Hengyang Medical School, University of South China


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Cholera and Enteric Diseases


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Mount Olive; NC

ncbi_isolation_source: cucumber fermentation brine

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: USDA-ARS


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Micavibrio sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: South Korea: Daegu

ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: Shin's Lab


ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Photorhabdus sp. S10-54

ncbi_submitter: Nanjing Agriculture University


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_country: Ghana: Accra

ncbi_isolation_source: sediment; water and sewage treatment plant

ncbi_submitter: University of Ghana


ncbi_country: Denmark: Haderslev

ncbi_isolation_source: activated sludge from Hade_18-Q3-R52-61

ncbi_organism_name: Candidatus Vicinibacter affinis

ncbi_submitter: Aalborg University


ncbi_country: Denmark

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Odense University Hospital


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hangzhou

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Canada: Sherbrooke

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Germany

ncbi_isolation_source: poultry meat

ncbi_organism_name: Pseudomonas sp. TMW 2.1634

ncbi_submitter: Technische Universitaet Muenchen


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Serratia nevei

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Treponema sp. UBA7579

ncbi_submitter: University of Queensland


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swab

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Beijing Advanced Innovation Center for Food Nutrition and Human Health


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: uncultured Staphylococcaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: Mexico: Mexico City

ncbi_isolation_source: blood-culture

ncbi_submitter: Instituto de Biotecnologia, UNAM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: human gut

ncbi_submitter: EBI


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Kitasatospora herbaricolor

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Burkholderia sp. AU18528

ncbi_submitter: University of Michigan


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Thailand

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Dialister invisus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Brazil: Sao Paulo State

ncbi_isolation_source: fungal garden

ncbi_organism_name: Pantoea sp. ICBG 1758

ncbi_strain_identifiers: ICBG 1758

ncbi_submitter: UW-Madison


ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Albert Einstein college of Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Jilin

ncbi_isolation_source: fecal sample

ncbi_submitter: Changchun Veterinary Institute


ncbi_country: India: New Delhi

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Christian Medical College


ncbi_organism_name: Micrococcales bacterium

ncbi_submitter: Stockholm University


ncbi_country: Australia

ncbi_isolation_source: eye

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The University of New South Wales


ncbi_country: Australia: Brisbane

ncbi_isolation_source: ear

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_isolation_source: Human saliva

ncbi_organism_name: Segatella salivae

ncbi_submitter: EMG


ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo AC


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Mexico: Monterrey

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: South Korea: Bucheon

ncbi_isolation_source: kimchi

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_organism_name: Anaerovibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Dietzia maris

ncbi_submitter: marine college, shandong university


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: France

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: National Reference Center of Antibiotics Resistance


ncbi_country: Italy: Tuscany

ncbi_isolation_source: total DNA from ciliate isolated from freshwater

ncbi_organism_name: Candidatus Bandiella numerosa

ncbi_submitter: University of British Columbia

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Candidatus Midichloriaceae;g__Candidatus Bandiella;s__Candidatus Bandiella numerosa


ncbi_organism_name: Frigoribacterium faeni

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: feces

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: The University of Queensland


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Liaocheng University


ncbi_organism_name: Verrucomicrobiota bacterium


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Washington University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: National Centre for Scientific and Technical Research (CNRST), Rabat, Morocco

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: UZ Gent


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Oman

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Sultan Qaboos University


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: New Zealand

ncbi_isolation_source: plant

ncbi_organism_name: Pseudomonas syringae pv. cerasicola

ncbi_submitter: New Zealand Institute for Plant & Food research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. cerasicola


ncbi_country: USA

ncbi_isolation_source: Gastric tissue biopsy

ncbi_submitter: Albert Einstein college of Medicine


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Kibdelosporangium banguiense


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Xiamen University


ncbi_isolation_source: gut of vertebrate mammal

ncbi_organism_name: Prevotella sp. UBA631

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Mycoplasmatota;c__;o__;f__;g__Candidatus Fimihabitans;s__Candidatus Fimihabitans intestinipullorum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__Mycoplasmatota incertae sedis;g__Candidatus Fimihabitans;s__Candidatus Fimihabitans intestinipullorum


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Kilo Moana Hydrothermal plume 60m

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: milk

ncbi_submitter: CENTER FOR INTERDISCIPLINARY STUDIES IN SCIENCE AND TECHNOLOGY


ncbi_country: Chile

ncbi_isolation_source: Digestive tract

ncbi_organism_name: Vibrio sp. ArtGut-C1

ncbi_submitter: Universidad de Los Lagos

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio sp. ArtGut-C1


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: DOE JGI


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus gallolyticus subsp. gallolyticus

ncbi_submitter: Region Zealand


ncbi_country: Germany: Muenster

ncbi_isolation_source: sputum

ncbi_organism_name: Achromobacter insuavis

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: USA: DC

ncbi_isolation_source: Urine suprapubic aspirate

ncbi_organism_name: Paracoccus yeei

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Montreal


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus KINW6025

ncbi_submitter: Broad Institute


ncbi_country: USA: New York

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Moraxella ovis

ncbi_submitter: SC


ncbi_isolation_source: Sputum

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV177

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Australia: Brisbane

ncbi_isolation_source: lungs of cystic fibrosis patient B

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Clostridium sp. CAG:265

ncbi_submitter: DTU


ncbi_country: Spain

ncbi_organism_name: Streptococcus plurextorum DSM 22810

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Demequina oxidasica

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_organism_name: Pseudomonas oryzihabitans

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Cryomorphaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium CG_4_9_14_0_2_um_filter_35_11


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: hyperthermophilic anaerobic system

ncbi_submitter: Chinese Academy of Sciences


ncbi_assembly_name: Ec138B_L2 MIRA assembly

ncbi_submitter: CGS-GL


ncbi_country: Germany: Penzberg

ncbi_isolation_source: purified water system

ncbi_organism_name: Undibacterium oligocarboniphilum

ncbi_strain_identifiers: EM 1

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Chengdu

ncbi_isolation_source: hospital sewage


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Halothiobacillus sp. 39-53-45


ncbi_isolation_source: Faeces


ncbi_organism_name: Paenibacillus amylolyticus

ncbi_submitter: University of Alaska Anchorage


ncbi_isolation_source: blood

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Division of Infection Control and Prevention, Medical Mycology Research Center, Chiba University


ncbi_country: Brazil

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Stenotrophomonas sepilia

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Desulfosudaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_isolation_source: gastric mucosa

ncbi_organism_name: Helicobacter suis

ncbi_submitter: University of Antwerp, Belgium


ncbi_organism_name: Bacteroides acidifaciens


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Secundilactobacillus;s__Secundilactobacillus collinoides;x__Secundilactobacillus collinoides DSM 20515 = JCM 1123


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: China: Guangzhou

ncbi_isolation_source: artificial lake

ncbi_organism_name: Serratia microhaemolytica

ncbi_submitter: Tradictional Chinese medicine Univeisity of Guangzhou


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Denmark

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Suihua City; Heilongjiang Province

ncbi_isolation_source: fermented vegetable

ncbi_organism_name: Paucilactobacillus nenjiangensis

ncbi_submitter: Northeast Forestry University


ncbi_country: Australia

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Microbiological Diagnostic Unit Public Health Laboratory, Melbourne


ncbi_isolation_source: pork

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: Nigeria

ncbi_submitter: Igbinedion University Okada Edo state Nigeria


ncbi_country: Czech Republic: Jachymov (Joachimstahl)

ncbi_isolation_source: mineral water

ncbi_organism_name: Rhizobacter sp. J219

ncbi_submitter: University of Chemistry and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__unclassified Rhizobacter;s__Rhizobacter sp. J219


ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: INRAE


ncbi_country: USA: Texas

ncbi_isolation_source: Clean room

ncbi_organism_name: Bacillus sp. 1735sda2

ncbi_submitter: NASA Johnson Space Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 1735sda2


ncbi_country: India: Hyderabad

ncbi_isolation_source: isolated from nematode bodies

ncbi_organism_name: Photorhabdus luminescens NBAII HiPL101

ncbi_strain_identifiers: NBAII HiPL101

ncbi_submitter: Washington State University


ncbi_country: China: Sichuan

ncbi_submitter: China Agricultural University


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Russia: Irkutsk

ncbi_isolation_source: oil slime

ncbi_organism_name: Gordonia amicalis

ncbi_strain_identifiers: IEGM 1385

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_isolation_source: metagenome

ncbi_organism_name: Streptococcus sp.

ncbi_submitter: University of Queensland


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Parabacteroides sp. PF5-13

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: France

ncbi_isolation_source: Plant

ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: University of California


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- AM-2014-D5_bin-131

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Bacillus safensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Myxococcaceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: uncultured Cryomorphaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Microcoleus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Gemmiger formicilis


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Coriobacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Conexibacteraceae bacterium


ncbi_organism_name: Lactiplantibacillus argentoratensis

ncbi_submitter: USDA-ARS


ncbi_organism_name: Alistipes shahii


ncbi_organism_name: Segatella buccae


ncbi_organism_name: uncultured Methylomirabilota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__environmental samples;s__uncultured Methylomirabilota bacterium


ncbi_organism_name: Anaerostipes hadrus


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: pig gut metagenome


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_assembly_name: Rumen uncultured genome RUG14490

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Bacteroides intestinalis


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China


ncbi_organism_name: Kitasatospora aburaviensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Colorado State University


ncbi_organism_name: Xanthomonas citri pv. fuscans

ncbi_submitter: Genoscope CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. fuscans


ncbi_isolation_source: blood

ncbi_submitter: The First Affiliated Hospital of Soochow University


ncbi_country: China: Zhejiang

ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_organism_name: Clostridium sp. AM22-11AC

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: University of Chicago


ncbi_country: Canada: British Columbia

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_organism_name: Listeria monocytogenes HCC23

ncbi_submitter: College of Veterinary Medicine, Mississippi State University


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Simplicispira sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: bacterium


ncbi_country: USA: Georg

ncbi_isolation_source: ocular swab

ncbi_organism_name: Moraxella oculi

ncbi_submitter: Purdue University


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Washington


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Peking University People's Hospital


ncbi_country: USA: California

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA/ARS/WRRC/PSM


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human saliva

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Food Industry Research and Development Institute


ncbi_isolation_source: cold seep

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Lysobacterales bacterium


ncbi_organism_name: Enterococcus avium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Maribacter arcticus

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thiomicrorhabdus sp.

ncbi_submitter: Portland State University


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University of Copenhagen


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_country: Canada: Ontario

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas syringae pv. tomato

ncbi_strain_identifiers: Pst DC 97T24A

ncbi_submitter: Ottawa Research and Development Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. tomato


ncbi_organism_name: Burkholderiales bacterium


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Houston Methodist


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Alistipes ihumii

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Cyclobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_assembly_name: freshwater MAG --- AlinenSedimentsCore1_bin-1524

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured Chlamydiae bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;x__environmental samples;s__uncultured Chlamydiae bacterium


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Bacillus cereus

ncbi_submitter: China Agricultural University


ncbi_country: Finland: Olkiluoto

ncbi_isolate: bin N1.59

ncbi_isolation_source: groundwater

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_strain_identifiers: bin N1.59

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: marine sediment

ncbi_organism_name: Streptomyces buecherae

ncbi_submitter: Nanjing University


ncbi_country: Russia: Saransk

ncbi_isolation_source: Tibicos symbiotic community

ncbi_organism_name: Novacetimonas hansenii

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_country: China: Shandong

ncbi_isolation_source: activated sludge

ncbi_organism_name: Paraflavisolibacter caeni

ncbi_submitter: Jiangsu Open University


ncbi_country: Spain: Granada

ncbi_isolation_source: minimium media from garden soil

ncbi_organism_name: Pseudomonas sp. 250J

ncbi_submitter: EEZ-CSIC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Czech Republic

ncbi_isolation_source: cultured in Erlenmeyer flask

ncbi_organism_name: Caldimonas thermodepolymerans

ncbi_submitter: Brno University of Technology


ncbi_organism_name: Pseudoflavonifractor phocaeensis

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Sphingobacterium thalpophilum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Escherichia coli

ncbi_submitter: AIT AUSTRIAN INSTITUTE OF TECHNOLOGY


ncbi_country: Mali: Point G Hospital

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis MAL020142

ncbi_submitter: Broad Institute


ncbi_organism_name: Rickettsia typhi


ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium leprae 7935681

ncbi_submitter: Eurofins Genomics India Pvt ltd


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA: SED Lab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ares Genetics GmbH


ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: Biology Centre CAS


ncbi_isolate: Faeces

ncbi_isolation_source: ROAR

ncbi_submitter: UMR 1137 IAME


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Eubacterium sp. AF22-8LB

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. AF22-8LB


ncbi_assembly_name: freshwater MAG --- MJ-2014_bin-2515

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Geobacteraceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Ground Turkey

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Alachua


ncbi_country: South Korea: Jeonnam Shinan

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: National Institute of Fisheries Science


ncbi_organism_name: Moritella viscosa

ncbi_submitter: University of Tromso


ncbi_assembly_name: LM07420 assembly

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universidade Federal de Vicosa


ncbi_organism_name: Holdemanella porci

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: India: Kochi; Kerala

ncbi_isolation_source: marine or sediment

ncbi_organism_name: Priestia flexa

ncbi_strain_identifiers: CCW CN82

ncbi_submitter: Technical University of Denmark


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG10821

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Alistipes ihumii

ncbi_submitter: Joint Microbiome Facility


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Bacillus cereus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Denmark: Ejby Moelle; Odense

ncbi_isolation_source: wastewater

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA1944


ncbi_isolation_source: screen

ncbi_organism_name: Escherichia coli

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: uncultured Coriobacteriia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D7_bin-1574

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Candidatus Nanopelagicus sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Nanopelagicus;x__unclassified Candidatus Nanopelagicus;s__Candidatus Nanopelagicus sp.


ncbi_isolation_source: not available: not collected

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SC


ncbi_country: China: Beijing

ncbi_isolation_source: culture medium

ncbi_organism_name: Proteus sp. CA142267

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. CA142267


ncbi_organism_name: Sphingomonas sp.


ncbi_country: USA: North Carolina

ncbi_isolation_source: Housefly

ncbi_organism_name: Campylobacter coli

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: uncultured Porphyromonas sp.


ncbi_country: Germany: Animal Facility; Justus-Liebig-University; Giessen

ncbi_isolation_source: Surface of a polyethylene microplastic particle present in tank 6 of a marine aquarium containing stony-coral fragments and water maintained at 26 degree C

ncbi_organism_name: Marinobacter sp. THAF197a

ncbi_submitter: Uni Bielefeld


ncbi_country: Australia: Melbourne

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Monash University


ncbi_country: USA: Ohio

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Canada: Nunavut

ncbi_isolation_source: high Arctic cold saline sulfur spring anaerobic sediment

ncbi_organism_name: Halothiobacillus sp.

ncbi_submitter: McGill University


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: Portland State University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 2 / B; 5m depth; 0.2 filter

ncbi_organism_name: Bacteroidetes bacterium GWB2_32_14

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium GWB2_32_14


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Japan

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Orebro University Hospital


ncbi_country: Ethiopia: Oromiya; East Wellega; Sire

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: University of Chicago


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: China: Sichuan; Chengdu

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA: CT

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Anaerovibrio sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Nigeria: Benin City

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Calgary


ncbi_organism_name: Exiguobacterium chiriqhucha

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium chiriqhucha


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Coffee Cup

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Klebsiella sp. Nk16

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_country: USA: Minnesota

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Minnesota


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Nanjing university


ncbi_organism_name: Galbitalea sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: Maryland

ncbi_organism_name: Entomoplasma ellychniae

ncbi_submitter: Academia Sinica


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university


ncbi_country: USA: Texas; Gonzales

ncbi_isolation_source: abscess

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Cyanobacteria bacterium P01_D01_bin.50

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium P01_D01_bin.50


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_country: France

ncbi_organism_name: Shigella flexneri 2a

ncbi_submitter: U.S. Food and Drug Administration


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Massilia sp. LjRoot122

ncbi_submitter: Aarhus University


ncbi_organism_name: Micropepsaceae bacterium


ncbi_organism_name: Sphingobacterium daejeonense


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_submitter: Unite de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE) CNRS, Faculte de Medecine, Universite de la Mediterranee, Marseille, France

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Bartonellaceae;g__Bartonella;s__Bartonella vinsonii;sb__Bartonella vinsonii subsp. arupensis;x__Bartonella vinsonii subsp. arupensis OK-94-513


ncbi_country: Netherlands: Rotterdam

ncbi_isolation_source: granules from the full-scale anammox reactor of Dokhaven-Sluisjesdijk wastewater treatment plant; further enriched at TU Delft in a chemostat over two months prior to sampling

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: SciBear LLC


ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: Germany

ncbi_organism_name: Novosphingobium hassiacum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Agathobacter rectalis


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Estonia

ncbi_isolation_source: plant

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_country: Japan

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University


ncbi_organism_name: Leclercia adecarboxylata


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_assembly_name: Rumen uncultured genome RUG10726

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: inflamed biopsy tissue from a patient with Crohn s disease

ncbi_organism_name: Bacillus smithii 7_3_47FAA

ncbi_submitter: Broad Institute


ncbi_country: Antarctica: Pendant Lake; Long Peninsula; Vestfold Hills

ncbi_isolation_source: Saline Meromictic Lake

ncbi_organism_name: Synechococcus sp. CS-602

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Foshan

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_organism_name: Tepidibacillus sp. HK-1

ncbi_submitter: Chiba University


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Sphaerochaeta sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Drancourtella sp.


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: India: Karnataka

ncbi_isolation_source: milk

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: nasal cavity

ncbi_submitter: University of Bielefeld, Germany


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Acinetobacter sp. IK40

ncbi_submitter: University of Manitoba


ncbi_country: China: Jiangxi

ncbi_isolation_source: rectum

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_assembly_name: Rumen uncultured genome RUG13998

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: uncultured Elusimicrobia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Brevundimonas sp. NPDC046655

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Chattogram Veterinary and Animal Sciences University


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Thermochlorobacter sp.

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;c__Chlorobiia;o__Chlorobiales;f__Candidatus Thermochlorobacteriaceae;g__Candidatus Thermochlorobacter;x__unclassified Candidatus Thermochlorobacter;s__Candidatus Thermochlorobacter sp.


ncbi_organism_name: Micromonospora sp. WMMD730

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Sulfitobacter sp. 1A12057

ncbi_submitter: The Chinese University of Hong Kong


ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Nocardiopsis sp. LOL_012

ncbi_submitter: Academia Mexicana de Ciencias


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudomonas synxantha

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;s__Candidatus Scatomorpha intestinigallinarum


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: uncultured Chthonomonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Nonomuraea wenchangensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Nonomuraea spiralis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: Iowa State University


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-9090

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Coriobacteriia bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Mycobacterium sp.


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA

ncbi_isolation_source: Tissue Right Shoulder HUMERAL MEMBRANE

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_organism_name: Syntrophomonadales bacterium

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;c__Syntrophomonadia;o__Syntrophomonadales;x__unclassified Syntrophomonadales;s__Syntrophomonadales bacterium


ncbi_country: France: Lille

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_assembly_name: freshwater MAG --- VK2_bin-1858

ncbi_organism_name: Oligoflexia bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Panama: Boco del Toro

ncbi_isolation_source: marine benthic turfs

ncbi_organism_name: Okeania sp. SIO2B3

ncbi_submitter: UCSD


ncbi_organism_name: Escherichia coli

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Canada: BC

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Lund University