ncbi_organism_name: Candidatus Alistipes avicola

ncbi_submitter: Quadram Institutte


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_organism_name: Microcoleus sp. AT8-A4

ncbi_submitter: Palacky University Olomouc


ncbi_assembly_level: Contig

ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


gtdb_representative: t

ncbi_country: Germany

ncbi_isolation_source: sourdough

ncbi_organism_name: Companilactobacillus mindensis DSM 14500

ncbi_submitter: Shanghai Majorbio

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: Human Stool

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: USA: Cambridge

ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Broad Institute


ncbi_submitter: Chongqing Medical University


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Brazil: Rio Grande do Sul

ncbi_isolation_source: cloacal

ncbi_submitter: Universidade Federal do Rio Grande do Sul


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Mycetohabitans endofungorum

ncbi_submitter: Cornell University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_organism_name: Alteromonadaceae bacterium Bs31

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Antarctica

ncbi_isolation_source: sea water

ncbi_organism_name: Pseudoalteromonas sp. SWXJZ94C

ncbi_submitter: Shandong University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EMG


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_country: Portugal

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_country: South Korea: Jeju Island

ncbi_isolation_source: seawater

ncbi_organism_name: Alteromonas ponticola

ncbi_refseq_category: reference genome

ncbi_submitter: Sungkyunkwan University


ncbi_assembly_name: Rumen uncultured genome RUG12729

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of British Columbia


ncbi_assembly_name: Rumen uncultured genome RUG427

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Japan

ncbi_isolation_source: Hospital sewage

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Tokyo Medical and Dental University


ncbi_organism_name: Porphyromonadaceae bacterium UBA7095


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Clostridium tetani

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_isolation_source: gut content

ncbi_organism_name: Escherichia coli

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Pasteurella atlantica

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;x__unclassified Spiroplasma;s__Spiroplasma endosymbiont of Asaphidion curtum


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: United Kingdom: Blackpool

ncbi_isolation_source: Throat swab

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Canada: Ontario

ncbi_isolation_source: Animal - Chicken-Litter

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. SA19960848


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Prevotella sp. UBA7773

ncbi_submitter: University of Queensland


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Alloprevotella tannerae


ncbi_organism_name: Candidatus Proelusimicrobium excrementi

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Brazil: Minas Gerais; Furnas Lake

ncbi_isolation_source: non-axenic culture from freshwater

ncbi_submitter: Universite de Montreal


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Shahid Beheshti University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_submitter: Kangwon National University


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Wenzhou Medical University


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: USP


gtdb_type_species_of_genus: t

ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: Baylor College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Mobiluncus;s__Mobiluncus curtisii;sb__Mobiluncus curtisii subsp. curtisii;x__Mobiluncus curtisii subsp. curtisii ATCC 35241


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Mexico: Puebla

ncbi_isolation_source: Donor s stool

ncbi_submitter: Benemerita Universidad Autonoma de Puebla


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.


ncbi_country: Australia: Melbourne

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Biomedicine Discovery Institute


ncbi_country: France

ncbi_isolation_source: human stool

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: TIFN


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; 10% subassembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Giovannoniibacteriota;s__Candidatus Giovannonibacteria bacterium RIFCSPLOWO2_02_44_8


ncbi_organism_name: Streptomyces sp. NPDC012751

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Switzerland

ncbi_isolation_source: environment

ncbi_submitter: University of Zurich


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China:Hong Kong

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Spirochaeta sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Denmark

ncbi_isolation_source: dairy

ncbi_organism_name: Leuconostoc mesenteroides subsp. mesenteroides

ncbi_submitter: Norwegian University of Life Sciences


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Bern


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Metropolitan Atlanta

ncbi_organism_name: Streptococcus pneumoniae GA16531

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Germany

ncbi_isolation_source: wheat sourdough

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Technical University of Munich


ncbi_country: Czech Republic

ncbi_isolate: Bordetella pertussis

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Bordetella pertussis

ncbi_strain_identifiers: BP155;Bordetella pertussis

ncbi_submitter: Institute of Microbiology of the Czech Academy of Sciences, v.v.i.


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Viet Nam

ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Greece: Epirus

ncbi_isolation_source: cheese whey

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: Spain

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Surrey


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: uncultured Gemmatimonadales bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: uncultured Selenomonadales bacterium


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: Stool Culture

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Broad Institute


ncbi_organism_name: Melghirimyces profundicolus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: Poland

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Public Health NIH - NRI


ncbi_organism_name: Muribaculum intestinale


ncbi_isolation_source: Finger abcess

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: Biological soil crust from Avdat LTER; Negev Desert; Israel

ncbi_organism_name: uncultured Thermomicrobiales bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_organism_name: Firmicutes bacterium HGW-Firmicutes-3

ncbi_submitter: UC Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium HGW-Firmicutes-3


ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: heart

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: UCM


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain: Asturias

ncbi_organism_name: Pseudolactococcus raffinolactis

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_country: USA: CRV

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Japan

ncbi_isolation_source: water

ncbi_organism_name: Pseudoxanthomonas japonensis

ncbi_submitter: Toho University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus aureus M13559

ncbi_submitter: Broad Institute


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Colombia: Antioquia; Medellin

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Antioquia


ncbi_country: Brazil:Santa Catarina; Blumenau

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Blautia sp.


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universidade Federal de Vicosa


ncbi_country: China: Shandong

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: Technical University of Munich


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. B1-1-5

ncbi_submitter: Curtin University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: KING ABDULAZIZ UNIVERSITY


ncbi_organism_name: Mesorhizobium sp. M0816

ncbi_submitter: Washington State University


ncbi_organism_name: Mycolicibacterium canariasense

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: United Kingdom: London

ncbi_isolation_source: Rectum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Yersinia proxima

ncbi_submitter: Tianjin Key Laboratory of Microbial Functional Genomics, Nankai University


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_isolation_source: skin of face; 1 single-cell amplified by MDA combined with human skin metagenome reads

ncbi_organism_name: Faucicola osloensis

ncbi_submitter: bioBiome, Inc.


ncbi_country: China

ncbi_organism_name: Gracilibacillus lacisalsi DSM 19029

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Institute of Biotechnology, Univerity of Helsinki


ncbi_country: Malaysia: Terengganu

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: IIT Roorkee


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Mexico

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Atlantic Ocean: South Georgia (Cumberland Bay)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: University of Bremen


ncbi_country: USA

ncbi_isolation_source: human skin

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: NHGRI/NIH


ncbi_assembly_name: Salmonella enterica CVM N32064-SQ v1.0

ncbi_country: USA: PA

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Georgia Tech


ncbi_isolation_source: blood from male fever patient 1

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Liaocheng Veteran Hospita


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Arthrobacter sp. NPDC093128

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia: Sydney

ncbi_isolation_source: feces

ncbi_submitter: The University of Sydney


ncbi_country: Australia

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Melbourne


ncbi_organism_name: Streptomyces microflavus


ncbi_assembly_level: Chromosome

ncbi_country: China: Nantong; jiangsu province

ncbi_isolation_source: a feces sample of swine origin

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou University


ncbi_country: Cambodia

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Japan:Okinawa; Ishigaki Island

ncbi_organism_name: Arthrobacter mangrovi

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_organism_name: Segatella copri

ncbi_submitter: Research Institute for Microbial Diseases, Osaka University


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_submitter: MRSN BI Team


ncbi_organism_name: Cutibacterium sp. KBN10P07758

ncbi_submitter: Kyungpook National University


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Bacillus sp. (in: firmicutes)

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. (in: firmicutes)


ncbi_organism_name: Yersinia pestis

ncbi_submitter: LLP "National Scientific Center of Especially Dangerous Infections named after Masgut Aikimbayev"


ncbi_organism_name: Kordiimonas sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Kosakonia cowanii

ncbi_submitter: North Carolina State University


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Clostridia bacterium


ncbi_submitter: JPIAMR ARMIS


ncbi_submitter: Fifth Affiliated Hospital, Southern Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: University of Tehcnology, Sydney


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_organism_name: uncultured Spirochaetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;x__environmental samples;s__uncultured Spirochaetota bacterium


ncbi_organism_name: Lysobacter capsici

ncbi_submitter: IBPM PNCBR RAS


ncbi_organism_name: uncultured Thermoleophilia bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Kansas State University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_organism_name: Elusimicrobia bacterium UBA1548

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Elusimicrobiota;x__unclassified Elusimicrobiota;s__Elusimicrobia bacterium UBA1548


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Klebsiella quasivariicola

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Ilumatobacteraceae bacterium


ncbi_country: India: Drass; Ladakh

ncbi_isolate: DRA bin4

ncbi_strain_identifiers: DRA bin4

ncbi_submitter: Monash University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_country: USA: Lubbock

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Texas Tech University


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_isolation_source: Caecum

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-15

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_strain_identifiers: new MAG-15

ncbi_submitter: Micoorganism


ncbi_organism_name: Luteimicrobium xylanilyticum

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: freshwater MAG --- Ki3-D3_bin-0360

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Methylobacterium adhaesivum

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: UNIVERSITY OF ARKANSAS


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_assembly_name: freshwater MAG --- UppL6_bin-1161

ncbi_organism_name: uncultured beta proteobacterium


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11005

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: USA: Omaha; Nebraska

ncbi_isolation_source: blood

ncbi_submitter: Walter Reed Army Institute of Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Corvallis


ncbi_country: China: Hangzhou

ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella sp. S116-49672


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Streptomyces sp. NPDC048304

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: North Sea: German Bight (Helgoland Mud Area)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Acetomicrobium hydrogeniformans

ncbi_submitter: University of Bremen


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD6510

ncbi_submitter: Chinese University of Hong Kong


ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_isolation_source: faecal

ncbi_organism_name: Clostridium perfringens


ncbi_isolate: Streptococcus mitis

ncbi_organism_name: Streptococcus mitis

ncbi_strain_identifiers: Streptococcus mitis

ncbi_submitter: UNIVERSITY COLLEGE LONDON


ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: Monash University


ncbi_country: China: Shenzhen

ncbi_isolation_source: environment

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Bacteroidales bacterium M2

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M2


ncbi_country: South Africa: Mpumalanga

ncbi_organism_name: Bradyrhizobium sp. Mp19

ncbi_submitter: University of Pretoria


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: Hopland; California

ncbi_isolation_source: 0.2 micron size-filtered soil effluent from rhizosphere-associated grassland soil

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Sutterella sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Caproiciproducens sp. CPB-2

ncbi_submitter: Sichuan University of Science & Engineering


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: Russia

ncbi_submitter: University of Tartu


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Belgium

ncbi_isolation_source: Pond sample 5

ncbi_organism_name: Clostridium sp. VAP52

ncbi_submitter: KULeuven


ncbi_country: Antarctica: Robinson Ridge

ncbi_isolation_source: pooled data from three different soil samples

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: nstitute of Tibetan Plateau Research, Chinese Academy of Sciences


ncbi_country: Nigeria: Abuja

ncbi_isolation_source: stool from farm worker

ncbi_submitter: Noguchi Memorial Institute fir Medical Research


ncbi_country: Japan

ncbi_genome_representation: partial

ncbi_organism_name: Massilia sp. UMI-21

ncbi_submitter: Changchun University of Science and Technology


ncbi_country: South Africa: King George V Hospital; Durban

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0041

ncbi_submitter: Broad Institute


ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Pseudogemmobacter sonorensis

ncbi_submitter: Eotvos Lorand University


ncbi_country: USA

ncbi_isolation_source: BAL

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: New Jersey Medical School-Rutgers University


ncbi_country: China: Daqing

ncbi_isolation_source: Oil reservoir production water

ncbi_organism_name: Dietzia sp. DQ11-44

ncbi_submitter: Peking University


ncbi_isolation_source: Chicken Breast

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_organism_name: Fusobacterium ulcerans

ncbi_submitter: Forsyth Institute


ncbi_submitter: Genoscope CEA


ncbi_country: Denmark: North Jutland

ncbi_isolation_source: Biopsy

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_organism_name: Liquorilactobacillus nagelii

ncbi_submitter: Teagasc


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_country: China: Xinjiang

ncbi_isolation_source: root

ncbi_organism_name: Pseudoclavibacter endophyticus

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_country: China: Tengchong; QiaoQuan hot spring

ncbi_isolation_source: Hot spring sediment

ncbi_organism_name: Candidatus Thermoflexus tengchongensis

ncbi_submitter: Sun Yat-Sen University


ncbi_country: USA: Rhode Island

ncbi_isolation_source: Clinical

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China: chongqing

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: the First Affiliated Hospital of Chongqing Medical University


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Rhizobium sp. Leaf371

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: Australia: Queensland

ncbi_submitter: QAAFI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter fetus;sb__Campylobacter fetus subsp. venerealis;x__Campylobacter fetus subsp. venerealis bv. intermedius


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_country: USA: Minnesota

ncbi_isolation_source: Rectal swab

ncbi_submitter: University of Minnesota


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: BGI


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces of yak

ncbi_organism_name: Fibrobacteraceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_submitter: University of Bern


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Muribaculum intestinale


ncbi_isolation_source: Caecum

ncbi_organism_name: Parabacteroides goldsteinii


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Selenomonadaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_country: China: Bengbu

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_isolation_source: Blood


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Alabama Birmingham


ncbi_country: USA: Ohio

ncbi_submitter: JCVI


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Cheng Kung University Hospital


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1194

ncbi_submitter: Broad Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Bacteroides hominis

ncbi_submitter: Vestfold Hospital Trust


ncbi_country: Switzerland

ncbi_submitter: CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_isolation_source: nasopharynx


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Adlercreutzia sp. DFI.6.23

ncbi_submitter: University of Chicago


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Candidatus Babelota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;x__unclassified Candidatus Babelota;s__Candidatus Babelota bacterium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Prevotella sp.

ncbi_submitter: University of British Columbia


ncbi_submitter: Chongqing Medical University


ncbi_country: China: Sichuan

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Russia: Moscow

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: SRCAMB


ncbi_country: China: Shanghai

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_country: Italy: Veneto

ncbi_isolation_source: rabbit carcass

ncbi_submitter: University of Bologna


ncbi_isolation_source: Sputum

ncbi_submitter: SC


ncbi_submitter: University of Sydney


ncbi_organism_name: Gluconobacter oxydans

ncbi_submitter: Teagasc


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: thermophilic microbial from ZC4 compost from a compost operation in the Sao Paulo Zoo (Brazil)

ncbi_organism_name: Bacillaceae bacterium ZC4

ncbi_submitter: Microbial diversity studies of the Sao Paulo Zoo


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Qingdao Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Third People's Hospital of Shenzhen


ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: UNICAMP


ncbi_organism_name: Massilia sp.


ncbi_country: USA: Tennessee

ncbi_organism_name: Dietzia sp. CQ4

ncbi_submitter: Peking University


ncbi_isolation_source: human gut

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: EMG


ncbi_organism_name: Trueperella pyogenes


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Beijing

ncbi_isolation_source: feces

ncbi_organism_name: Jingyaoa shaoxingensis

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_country: Canada: Vancouver

ncbi_isolation_source: maternal vaginal swab fluid of a 29 year-old woman on Bifidus selective media agar

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: sediment

ncbi_organism_name: Paenarthrobacter sp. R1


ncbi_organism_name: Ramlibacter sp.

ncbi_submitter: Monash University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1483 from squamous cell carcinomas patient MST013

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Queensland


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Anaeromyxobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Hong Kong: Kam Shan

ncbi_isolation_source: soil

ncbi_organism_name: Serratia marcescens

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Nautiliaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: Belgium

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Castellaniella sp.

ncbi_submitter: Technische Universiteit Delft


ncbi_isolation_source: Pyometra

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_isolation_source: root

ncbi_organism_name: Pseudomonas sp. GM33

ncbi_submitter: Oak Ridge National Lab


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Sulfobacillus benefaciens

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;s__Sulfobacillus benefaciens


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides sp. AF18-33

ncbi_submitter: BGI


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Clostridiales bacterium UBA7273


ncbi_organism_name: Chromobacterium sp. ASV5

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: International Space Station

ncbi_isolation_source: water

ncbi_organism_name: Ralstonia insidiosa

ncbi_submitter: NASA Ames Research Center


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus mitis SK575

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus mitis group;s__Streptococcus mitis;x__Streptococcus mitis SK575


ncbi_country: Kenya: Talek

ncbi_isolation_source: termite gut

ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Cuba: Guines

ncbi_isolation_source: Cloacal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Serratia fonticola

ncbi_submitter: University Hospital Basel


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: MRSN BI Team


ncbi_country: Belarus: Grodno

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: Northumbria University


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: blood

ncbi_submitter: OHSU


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Andrena carantonica


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium accolens

ncbi_submitter: Duke University


ncbi_organism_name: Syntrophales bacterium


ncbi_country: Chile

ncbi_isolation_source: ORINE

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad de Concepcion


ncbi_country: USA: PA

ncbi_isolation_source: porcine pig kidney

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Perugia (PG)

ncbi_isolation_source: intestine content

ncbi_organism_name: Clostridium botulinum C/D

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_country: Viet Nam: Ho Chi Minh City

ncbi_isolation_source: genital exudate

ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: PIHCM 20151

ncbi_submitter: Pasteur Institute of Ho Chi Minh City


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre Hospitalier National et Universitaire de Fann


ncbi_country: Slovakia: Ruzomberok

ncbi_isolation_source: urine

ncbi_submitter: Faculty of Natural Sciences, Comenius University in Bratislava


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_submitter: Istituto Superiore di Sanita'


ncbi_country: USA: Oklahoma City; OK

ncbi_isolation_source: newborn blood culture

ncbi_strain_identifiers: SCB 14

ncbi_submitter: University of Oklahoma Health Sciences Center


ncbi_organism_name: Acetivibrio ethanolgignens

ncbi_submitter: Universidad de Leon


ncbi_country: Spain: Benageber Reservoir; Valencia

ncbi_isolation_source: freshwater biome

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Hellea sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Nitrospira sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shanghai

ncbi_isolation_source: root

ncbi_organism_name: Pseudomonas chlororaphis HT66

ncbi_submitter: Shanghai JiaoTong University


ncbi_organism_name: bacterium 19MO04SH03

ncbi_submitter: FDA-CVM


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Caulobacterales bacterium

ncbi_submitter: University of Galway


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Acinetobacter dispersus

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Mesonia sediminis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Coproplasma;s__Candidatus Coproplasma stercorigallinarum


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Lactobacillus iners

ncbi_submitter: University of Toronto


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Phascolarctobacterium faecium


ncbi_organism_name: uncultured Intrasporangiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alloprevotella tannerae

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Ruthenibacterium lactatiformans


ncbi_organism_name: Salmonella sp. NW571

ncbi_submitter: Sichuan University


ncbi_organism_name: Coprococcus sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Candidatus Aphodosoma sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Aphodosoma;x__unclassified Candidatus Aphodosoma;s__Candidatus Aphodosoma sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: rat gut

ncbi_organism_name: Clostridiales bacterium UBA3277

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Smithella sp.

ncbi_submitter: University of Iowa


ncbi_assembly_name: freshwater MAG --- Loc080925-7m_bin-0623

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: blood

ncbi_strain_identifiers: Tweed

ncbi_submitter: Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Bartonellaceae;g__Bartonella;s__Bartonella vinsonii;sb__Bartonella vinsonii subsp. berkhoffii;x__Bartonella vinsonii subsp. berkhoffii str. Tweed


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Trueperaceae bacterium


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-390-A23

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1213

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Fenyang college of shanxi medical university


ncbi_country: Finland

ncbi_isolation_source: mastitis

ncbi_submitter: KOlimastIR


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Infantis

ncbi_submitter: Cornell University


ncbi_country: USA: Missouri

ncbi_isolation_source: metalworking fluids from industrial sites

ncbi_organism_name: Mycobacteroides immunogenum

ncbi_submitter: University of Trento


ncbi_country: South Africa: Cape Recife

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Tabrizicola sp.

ncbi_submitter: University of Wisconsin, Madison


ncbi_country: USA

ncbi_submitter: University of Michigan Medical School

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium intracellulare;sb__Mycobacterium intracellulare subsp. chimaera


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus warneri

ncbi_strain_identifiers: ACVGG

ncbi_submitter: NISC - NIH Intramural Sequencing Center


ncbi_organism_name: Bifidobacterium pseudocatenulatum


ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: Argonne National Laboratory


ncbi_country: Paraguay: Nueva Italia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: Netherlands: Leiden

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Leiden University


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Italy: Basilicata

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_organism_name: Pseudomonas sp. FW306-07-L

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Duncaniella sp.

ncbi_submitter: University of Queensland


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_submitter: Erasmus University Medical Center


ncbi_country: Canada: Vancouver

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: Fulvivirga sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: South Korea: Seoul

ncbi_isolation_source: vaginal tract

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: KoBioLabs, Inc.


ncbi_country: Nigeria

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: University of Chicago


ncbi_country: Canada: Willows Beach; Victoria; BC

ncbi_isolation_source: algae surface

ncbi_organism_name: Pseudoalteromonas fuliginea

ncbi_submitter: University of Victoria


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-401

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_strain_identifiers: new MAG-401

ncbi_submitter: Micoorganism


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_country: Italy: Rome

ncbi_isolation_source: swab from patient with pharyngitis/tonsilitis

ncbi_submitter: Paul A. Hoskisson

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Corynebacteriaceae;g__Corynebacterium;s__Corynebacterium diphtheriae;x__Corynebacterium diphtheriae bv. gravis;x__Corynebacterium diphtheriae bv. gravis str. ISS 4060


ncbi_country: Pakistan: Lahore

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Tepidisphaerales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Nanji Island

ncbi_isolation_source: soil sediment

ncbi_organism_name: Exiguobacterium sp. s133

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. s133


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Infectious Diseases Area, Respiratory Infection and Antimicrobial Resistance Group, Biogipuzkoa Heal


ncbi_assembly_name: Salmonella enterica CVM N42500 v1.0

ncbi_country: USA: NY

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: Korea: Gwangju

ncbi_isolation_source: Subgingival dental plaque

ncbi_organism_name: Prevotella intermedia

ncbi_strain_identifiers: KCOM 2837

ncbi_submitter: Korean Collection for Oral Microbiology


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Anaerococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Research Institute for Tropical Medicine


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: university of helsinki, institute of biotechnology


ncbi_country: Netherlands

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Dutch CPE surveillance Study Group


ncbi_organism_name: Chitiniphilus purpureus

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Urine

ncbi_organism_name: Brevibacterium sp. Marseille-P9724

ncbi_submitter: URMITE


ncbi_organism_name: Acinetobacter lactucae

ncbi_submitter: Centers for Disease Control and Prevention.  Division of Healthcare Quality Promotion


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Pseudomonas oryzihabitans

ncbi_submitter: BGI


ncbi_assembly_name: freshwater MAG --- F14_bin-1480

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Methylobacteriaceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: Atlantic Ocean: Northern Atlantic Ocean

ncbi_isolation_source: ocean water

ncbi_submitter: Uppsala University


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: China: Zhejiang

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_country: Russia

ncbi_isolation_source: cloacal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Monika Dolejska Antibiotic resistance group- UVPS


ncbi_country: Japan: Gifu; Nakatsugawa

ncbi_isolation_source: human intestinal mucosa

ncbi_organism_name: Yersinia enterocolitica subsp. palearctica

ncbi_strain_identifiers: Naka 4631

ncbi_submitter: Shinshu University Graduate School of Medicine


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Aequorivita sp.

ncbi_submitter: University of Calgary


ncbi_country: France: Lille

ncbi_isolation_source: trachea

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_organism_name: Celeribacter marinus

ncbi_submitter: Yantai University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: Neisseria dentiae

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Belgium

ncbi_isolation_source: cocoa bean fermentation

ncbi_organism_name: Gluconobacter japonicus

ncbi_submitter: Ghent University


ncbi_country: China: Jiangsu

ncbi_isolation_source: gallbladder

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou university


ncbi_organism_name: Thermodesulfovibrio sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Hyphococcus sp.

ncbi_submitter: Lund University


ncbi_country: Madagascar: devant la Baie de Narendry

ncbi_isolation_source: gill

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Candidatus Thiodiazotropha;s__Candidatus Thiodiazotropha sp. (ex Myrtea spinifera)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: farm environment

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: Rwanda: Huye

ncbi_isolation_source: blood

ncbi_submitter: University of Rwanda

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA

ncbi_isolation_source: bodily fluid

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: China agriculture university


ncbi_country: Serbia: Kraljevo

ncbi_isolation_source: farm

ncbi_submitter: Institute for Molecular Genetics and Genetic Engineering

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: USA: University of Wisconsin Hospital

ncbi_organism_name: Enterococcus faecalis EnGen0426

ncbi_submitter: Broad Institute


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: Sewage

ncbi_organism_name: Acinetobacter sp. WCHA29

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Brazil: Anavilhanas; AM

ncbi_isolation_source: Acromyrmex fungus garden

ncbi_organism_name: Candidatus Pantoea multigeneris

ncbi_submitter: UW-Madison


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Xanthomonas sacchari

ncbi_submitter: Louisiana State University


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_assembly_name: Rumen uncultured genome RUG14397

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: INIA P508

ncbi_isolate: INIA P508

ncbi_isolation_source: infant faeces

ncbi_organism_name: Limosilactobacillus mucosae

ncbi_strain_identifiers: INIA P508

ncbi_submitter: UVEG


ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 2788

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: South Korea:Changwon

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Salmonella sp. NW350

ncbi_submitter: Sichuan University


ncbi_country: Sweden

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 4076-1


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Montreal


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: EMG


ncbi_country: China: Jiaxing; Zhejiang

ncbi_isolation_source: chicken gizzard

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Hyphococcus sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: China: Nanjing

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: MA

ncbi_organism_name: Shigella flexneri

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_isolate: blood

ncbi_strain_identifiers: blood

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Canadian Research Institute for Food Safety


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Lactobacillus paragasseri

ncbi_submitter: Loyola University Chicago


ncbi_country: Spain

ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: Food and Drug Administration-College Park


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Vibrio diazotrophicus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: China: Shandong

ncbi_isolation_source: brain tissue

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: liaocheng university


ncbi_country: Iran: Aran-Bigdol

ncbi_isolation_source: Brines

ncbi_organism_name: Salinivenus lutea

ncbi_strain_identifiers: DBO

ncbi_submitter: IMEDEA


ncbi_country: China: Guangxi

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Nocardia sp. NPDC047648

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Enterovibrio escicola

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Portugal

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Instituto de Tecnologia Quimica e Biologica Antonio Xavier


ncbi_country: Switzerland

ncbi_isolation_source: Nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: United Kingdom: Somerset

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: Brazil

ncbi_isolation_source: Feces

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_submitter: Nanjing Drum Tower Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Meleagridis


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: USA: Seattle

ncbi_isolation_source: bronchoalveolar lavage of cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Thailand: Phetchabul

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Faculty of Public Health


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Marinobacter sp. UBA3604

ncbi_submitter: University of Queensland


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centre for Infectious Disease Research in Zambia


ncbi_assembly_name: freshwater MAG --- C-2_bin-305

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Kasetsart University


ncbi_country: Ghana: Pakro

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Noguchi Memorial Institute for Medical Research, University of Ghana


ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: University of California


ncbi_organism_name: Mycobacterium tuberculosis 18b

ncbi_submitter: EPFL


ncbi_submitter: Center for Bio/Molecular Science & Engineering, Naval Research Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio natriegens;x__Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Sulfitobacter profundi

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Opitutaceae bacterium MBA3-11

ncbi_submitter: Quanzhou Normal University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: addis ababa university


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Pseudomonas oryzihabitans

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: EMG


ncbi_organism_name: Marinisporobacter balticus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: China: Zhejiang

ncbi_isolation_source: kidney preservation fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital,College of Medicine,Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Parasutterella sp.


ncbi_organism_name: Catalimonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Ghana:Kassena Nankana District

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Klebsiella michiganensis


ncbi_country: USA: Colorado;Grand_Junction

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Planococcus sp. (in: firmicutes)

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Planococcus;x__unclassified Planococcus (in: firmicutes);s__Planococcus sp. (in: firmicutes)


ncbi_country: Thailand

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: India: Vellore

ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences (AMMS)


ncbi_organism_name: uncultured Micavibrio sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Maricaulis sp.

ncbi_submitter: China University of Geosciences


ncbi_country: USA

ncbi_isolation_source: Cellulitis

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: UTHSC/McGovern Medical School


ncbi_country: India: Vittunayakthanda; Sangareddy; Telangana

ncbi_isolation_source: root

ncbi_organism_name: Microbacterium trichothecenolyticum

ncbi_submitter: IUNFC


ncbi_organism_name: Firmicutes bacterium CAG:24053_14

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:24053_14


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Brachybacterium alimentarium

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Liaocheng University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Borreliella afzelii

ncbi_submitter: S. Gallicano Institute, IRCCS


ncbi_submitter: Uliege - Faculty of Veterinary Medicine


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Yantai University


ncbi_organism_name: Eubacterium ventriosum


ncbi_organism_name: Eubacterium sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite de Limoges


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Nanjing University


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Pseudomonas sp. B22129

ncbi_submitter: UMR 1300 BIOEPAR


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Cypionkella sp. TWP1-2-1b2

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INSERM


ncbi_submitter: China Jiliang University


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Gyeongkuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: State University of Londrina


ncbi_organism_name: Exiguobacterium artemiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium artemiae


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_submitter: EBI


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Slackia isoflavoniconvertens


ncbi_submitter: Faculty of Agriculture, Cairo University


ncbi_submitter: National Health Research Institutes

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_assembly_name: freshwater MAG --- Loc090907-5m_bin-653

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: University of Georgia


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Pittsburgh


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Nitratiruptor sp.

ncbi_submitter: Portland State University


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Kenya: Kisumu

ncbi_isolation_source: urinary tract

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Kenya Medical Research Institute - United States Army Medical Research Directorate Kenya


ncbi_country: USA: NY

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Newport

ncbi_submitter: New York State Dept. of Health - Wadsworth Center


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Gut of mealworms

ncbi_organism_name: Acinetobacter sp. NyZ410

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou Center for Disease Prevention and Control


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: University of Chicago


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-1694

ncbi_organism_name: uncultured Nitrosomonadales bacterium


ncbi_organism_name: Seohaeicola saemankumensis

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: Spain:Blanes Bay Microbial Observatory; Mediterranean Sea

ncbi_isolation_source: single cell amplified by MDA; surface seawater

ncbi_organism_name: Pelagibacterales bacterium SAG-MED29

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Pelagibacterales bacterium SAG-MED29


ncbi_country: Russia:Cape Chukochii; East Siberian Sea

ncbi_isolation_source: permafrost sediment

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Princeton University


ncbi_country: Iraq

ncbi_isolation_source: burn wound

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Al-Basrah University


ncbi_country: Hong Kong

ncbi_isolation_source: CSF

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Brazil

ncbi_isolation_source: stalk

ncbi_strain_identifiers: IBSBF 2666

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas phaseoli;x__Xanthomonas phaseoli pv. manihotis;x__Xanthomonas phaseoli pv. manihotis str. IBSBF 2666


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Tissues

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Pediatric Research and Clinical Center for Infectious Diseases


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Citellus undulatus

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_assembly_name: Rumen uncultured genome RUG13872

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_country: Switzerland: Luzern

ncbi_isolation_source: blood culture

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: NCDC Lugar Center


ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD19042

ncbi_submitter: Broad Institute


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: CAU


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Lacticaseibacillus rhamnosus


ncbi_country: Russia

ncbi_isolation_source: soil

ncbi_organism_name: Azotobacter chroococcum

ncbi_submitter: Princeton University


ncbi_country: Australia: Melbourne

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_submitter: University of Pittsburgh


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Pristimantibacillus sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: Veillonella infantium

ncbi_submitter: EMG


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 221

ncbi_organism_name: Staphylococcus shinii

ncbi_strain_identifiers: SNUC 4554

ncbi_submitter: University of Calgary


ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: France

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Ectopseudomonas mendocina S5.2

ncbi_submitter: University of Malaya


ncbi_country: Canada: Montreal

ncbi_isolation_source: Dental unit waterline

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite Laval


ncbi_country: Philippines: Davao

ncbi_isolation_source: stem

ncbi_organism_name: Erwinia mallotivora

ncbi_submitter: Institute of Plant Breeding


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Houston; TX

ncbi_isolation_source: vagina

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Seattle University


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_country: South Korea

ncbi_isolation_source: Environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: Seoul National University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: Solirubrobacteraceae bacterium


ncbi_country: USA:Riverside; California

ncbi_organism_name: Xylella fastidiosa subsp. morus

ncbi_submitter: USDA


ncbi_country: Hong Kong: Wong Wan Chau

ncbi_isolation_source: Macroalgal ambient sediment

ncbi_organism_name: Ruegeria sp. HKCCA5463

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: USDA ARS


ncbi_country: China: Hengyang

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Hengyang Medical School, University of South China


ncbi_country: Norway

ncbi_isolation_source: Urine

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacillus tropicus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces of yak

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Treponema sp. UBA3659

ncbi_submitter: University of Queensland