ncbi_organism_name: Mycolicibacterium doricum

ncbi_submitter: Department of Infection Metagenomics, Osaka University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: India: Tiruvallur

ncbi_genome_representation: full

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M2010

ncbi_submitter: Broad Institute


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_isolation_source: pulmonary sample

ncbi_submitter: CHU de Bicetre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_assembly_level: Contig

ncbi_isolate: pig swab

ncbi_isolation_source: Farm

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: pig swab

ncbi_submitter: Functional Genomics Genter Zurich


ncbi_organism_name: Cyanobacteria bacterium J06560_5

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium J06560_5


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: Bangladesh

ncbi_isolation_source: Citrus sp.

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: CIRAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_country: China: Nanjing

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing agticultural university


ncbi_country: USA: CA

ncbi_isolation_source: bean curd

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Dethiobacteria bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: China National Research Institute of Food and Fermentation Industries Co., LTD

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: USA

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Universite Paris Sud


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;x__unclassified Francisella;s__Francisella endosymbiont of Hyalomma scupense


ncbi_organism_name: Brucella suis 1330

ncbi_submitter: The Federal Goverment Health Institution "Stavropol Plague Control Reseach Institute" of the Federal Service for Supervision in the Sphere of Consumer Rights Protection and Human Welfare

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: Hawaii

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


gtdb_representative: t

ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Segatella salivae

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Brazil: Iranduba

ncbi_isolation_source: leaf litter

ncbi_organism_name: Pedobacter sp.

ncbi_submitter: University of Sao Paulo


ncbi_country: USA: Los Angeles

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: JCVI


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Verrucomicrobia bacterium UBA4982

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium UBA4982


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: bay water summer D sample 29 PSU in greater than .8 micron size fraction

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Clemson University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of Chicago


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Morganella morganii

ncbi_submitter: Agroscope


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Streptococcus pyogenes ATCC 10782

ncbi_submitter: Baylor College of Medicine


ncbi_submitter: University of California at Davis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Actinomyces sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: South Africa: Chwezi Clinic

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0108

ncbi_submitter: Broad Institute


ncbi_country: Mali: Point G Hospital

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis MAL020110


ncbi_country: South Korea:Jinju

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_isolation_source: jejunum

ncbi_organism_name: Corynebacterium xerosis

ncbi_submitter: Quadram Institutte


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Italy: Florence

ncbi_isolation_source: lesion swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_country: United Kingdom

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leeds


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alteromonas australica


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Montoursville; Mill Creek

ncbi_isolation_source: freshwater creek

ncbi_organism_name: Pedobacter sp. MC2016-05

ncbi_submitter: Lycoming College


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Paraburkholderia caballeronis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Flavobacteriales bacterium


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Canada: Vancouver

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Thalassospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Thailand: Chonburi

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: South Africa: University of Cape Town; Rondebosch

ncbi_isolation_source: Thiocyanate bioreactor

ncbi_organism_name: Comamonadaceae bacterium SCN 68-20

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: Micromonospora sp. NPDC047730

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_country: Lithuania

ncbi_isolation_source: environmental water

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Lithuanian University of Health Sciences


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_assembly_level: Chromosome

ncbi_country: Turkey: Adiyaman; Besni

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-123

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Tabrizicola sp.

ncbi_strain_identifiers: new MAG-123

ncbi_submitter: Micoorganism


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-1001

ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus COAS6039

ncbi_submitter: Broad Institute


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Indian Institute of Technology Roorkee


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR3057

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: China: Bubeng

ncbi_isolation_source: termite gut

ncbi_organism_name: Rickettsia sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: urine

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Guatemala

ncbi_submitter: Entasis Therapeutics


ncbi_country: France: Marseille

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: Escherichia coli


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Akkermansiaceae bacterium UBA5688

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: EMG


ncbi_country: China

ncbi_isolation_source: apple

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: China Agricultural University


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-410-D23

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: sheep gut metagenome


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: University of Chicago


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp. AM29-11AC

ncbi_submitter: BGI


ncbi_organism_name: Weizmannia sp. FSL K6-3076

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Heyndrickxia;x__unclassified Heyndrickxia;s__Weizmannia sp. FSL K6-3076


ncbi_organism_name: Sporichthyaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_country: USA: North Carolina

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Calgary


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kenya Medical Research Institute


ncbi_isolate: YS river water

ncbi_strain_identifiers: YS river water

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing University of Chinese Medicine


ncbi_submitter: MRSN BI Team


ncbi_organism_name: Levilactobacillus muriae

ncbi_refseq_category: reference genome

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: Pseudomonas sp. BNK-44-a

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID 4086

ncbi_submitter: University Hospital Regensburg


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_isolate: isolate

ncbi_strain_identifiers: isolate

ncbi_submitter: Indian Biological Data Centre


ncbi_organism_name: uncultured Selenomonas sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lysobacter sp.


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_isolate: AOP30_C1_coeur _bin _2

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: AOP30_C1_coeur _bin _2

ncbi_submitter: Genoscope


ncbi_organism_name: Phocaeicola dorei


ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: TCFB 0543

ncbi_submitter: The University of Queensland


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Roseobacter sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: Noosa River

ncbi_organism_name: Proteobacteria bacterium UBA5122

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA5122


ncbi_organism_name: Salmonella sp. 741265101_HBA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_country: USA: Chicago

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Chicago


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Macrococcoides caseolyticum


ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: China: Guizhou

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_country: China: Dongguan

ncbi_organism_name: Salmonella sp. 15E133

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Chthoniobacteraceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: USA

ncbi_isolation_source: root

ncbi_organism_name: Herbaspirillum rubrisubalbicans

ncbi_submitter: Zhejiang University


ncbi_country: Germany

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Freie Universitaet Berlin


ncbi_country: USA: Georgia

ncbi_organism_name: Rouxiella badensis

ncbi_submitter: University of Georgia


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Deinococcales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Lebanon

ncbi_isolation_source: deep tracheal aspirates

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Lebanese American University


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_submitter: SC


ncbi_country: Venezuela: Caracas

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_country: India: Chandigarh; IMTECH

ncbi_organism_name: Enterobacter hormaechei subsp. xiangfangensis

ncbi_submitter: Institute of Microbial Technology


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert sheltered soil

ncbi_organism_name: Egibacteraceae bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: China: Beijing city

ncbi_submitter: Tianjin Genskey Medical Technology Co., Ltd


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: The Ohio State University


ncbi_country: Australia: Queensland

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Andrew Barnes's shared submissions


ncbi_country: Canada: Val-d Or

ncbi_isolation_source: surface-sterilized gnotobiotic actinorhizal nodule; gnotobiotic green alder inoculated with crushed alder nodule

ncbi_organism_name: Terrabacter sp. Ter38

ncbi_submitter: Universite de Sherbrooke


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: Colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: Chile: Isla Laitek

ncbi_isolation_source: feces

ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Universidad de Concepcion


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: New Zealand: Dunedin

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Rahnella inusitata

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_country: China: Chongqing

ncbi_isolation_source: Surgical wound

ncbi_organism_name: Enterobacter chuandaensis

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: France: Limoges

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Institut Pasteur


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GW704-E2

ncbi_submitter: Arkin Lab


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University Hospital of Antwerp


ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_country: France: Bordeaux

ncbi_isolation_source: Digestive

ncbi_organism_name: Enterococcus faecium


ncbi_country: Switzerland: Zurich

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_country: USA: Pacific Northwest

ncbi_isolation_source: blood from patient with bacteremia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: Geneva University Hospitals


ncbi_submitter: TIGR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni 84-25


ncbi_organism_name: Azoarcus sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: Bc Uniclon 05

ncbi_submitter: UFMG


ncbi_country: China: Tengchong; Baoshan; Yunnan

ncbi_isolation_source: soil

ncbi_organism_name: Ralstonia mojiangensis

ncbi_submitter: Yunnan Academy of Tobacco Agricultural Sciences


ncbi_isolation_source: BLOOD


ncbi_country: Italy

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Sapienza University of Rome


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Acidobacteria bacterium UBA5166

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__unclassified Acidobacteriota;s__Acidobacteria bacterium UBA5166


ncbi_country: USA: St. Louis

ncbi_isolation_source: Endovascular

ncbi_organism_name: Acinetobacter schindleri

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_submitter: University of Georgia


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Canada: North Alberta

ncbi_isolation_source: Suncor tailing pond sample

ncbi_organism_name: Erysipelotrichaceae bacterium UBA4808


ncbi_country: United Kingdom

ncbi_isolation_source: Sediment

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UOL


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: USA: Minnesota

ncbi_isolation_source: urine

ncbi_submitter: University of Minnesota


ncbi_country: Canada: Alberta

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter sp. 528

ncbi_submitter: Translational Genomics Research Institute


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Dallas

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Dallas 137


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_country: Indian Ocean

ncbi_isolation_source: sediments

ncbi_organism_name: Streptomyces tirandamycinicus

ncbi_submitter: Cochin University of Science and Technology


ncbi_organism_name: Endozoicomonas sp. Mp262

ncbi_submitter: Ocean University of China


ncbi_country: China: Wenzhou

ncbi_isolation_source: contaminated soil

ncbi_organism_name: Raoultella sp. YJ

ncbi_strain_identifiers: YJ

ncbi_submitter: Xinjiao Dong


ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Jinhua

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_organism_name: Flexilinea sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Australia: Mildura; Victoria

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum;sb__Candidatus Phytoplasma australasiaticum subsp. australasiaticum


ncbi_assembly_name: Rumen uncultured genome RUG14261

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Oklahoma

ncbi_organism_name: Methylomonas rivi

ncbi_submitter: University of Oklahoma


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Canada: High River

ncbi_isolation_source: Cattle feces

ncbi_submitter: LETHBRIDGE RESEARCH CENTRE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Lysinibacillus parviboronicapiens

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Shaanxi

ncbi_isolation_source: pig fecal swab

ncbi_submitter: China Agricultural University


ncbi_country: Switzerland: Fribourg

ncbi_isolation_source: autopsy

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_country: South Korea: Yeosu

ncbi_isolation_source: marine sediment

ncbi_organism_name: Chachezhania sediminis

ncbi_submitter: Chung-ang University, College of Medicine


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus durans

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.


ncbi_country: Denmark: Odense

ncbi_organism_name: Streptococcus pasteurianus

ncbi_submitter: Region Zealand


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Amylibacter sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_organism_name: Streptococcus agalactiae serogroup III

ncbi_submitter: GSK Vaccines


ncbi_organism_name: Bacilli bacterium


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: The University of Melbourne


ncbi_country: Afghanistan

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Victivallaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Campylobacter helveticus

ncbi_submitter: SC


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: BGI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Aeromonas sp. R7-5

ncbi_submitter: Hangzhou CDC


ncbi_organism_name: Haemophilus parahaemolyticus

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: uncultured Brachyspira sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: CA

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Germany

ncbi_isolation_source: lactic starter

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: CIRM-BIA 2101

ncbi_submitter: Brigham Young University


ncbi_country: Canada: Ontario

ncbi_isolation_source: Toe Wound

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Public Health Ontario


ncbi_isolation_source: Final carcass

ncbi_submitter: US Meat Animal Research Center-ARS


ncbi_isolation_source: agricultural environmental material

ncbi_submitter: Bacteriology, Microbiology, Osaka Institute of Public Health


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_country: Peru: Lima

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas poae

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia territorii

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Copenhagen


ncbi_country: USA: OR

ncbi_isolation_source: Ground Beef

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: FDA


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus SCOA6011

ncbi_submitter: Broad Institute


ncbi_country: Tanzania: Dar es Salaam

ncbi_submitter: University of Bergen


ncbi_country: Brazil

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Federal University of Santa Catarina


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Aequorivita sp. UBA5106

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: Barry County; MI

ncbi_isolation_source: Little Long Lake

ncbi_organism_name: Microcystis aeruginosa LL13-06

ncbi_submitter: University of Michigan


ncbi_isolate: Seawater

ncbi_isolation_source: Seawater

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: SEOUL NAT'L UNIV.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


gtdb_type_species_of_genus: t

ncbi_country: Japan

ncbi_isolation_source: moto starter of sake

ncbi_submitter: Department of Life Science & Technology Faculty of Chemistry, Materials and Biotechnology Kansai University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Latilactobacillus;s__Latilactobacillus sakei;sb__Latilactobacillus sakei subsp. sakei;x__Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157


ncbi_country: Australia: Adelaide

ncbi_isolation_source: sinus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Adelaide Medical School


ncbi_country: Ethiopia: Oromia; West Shewa

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_organism_name: Geitlerinemataceae cyanobacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Kenya

ncbi_organism_name: Xenorhabdus hominickii

ncbi_submitter: Goethe University


ncbi_organism_name: Algoriphagus sp.

ncbi_submitter: University of Duisburg Essen


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;s__Candidatus Scatomorpha intestinigallinarum


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Qingdao

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: VHProbi O44

ncbi_submitter: Nutrition &Health Technology Center


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Canada: Alberta

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Oklahoma State Universtiy


ncbi_country: USA: MO

ncbi_isolation_source: organ

ncbi_submitter: University of Missouri

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: Sweden: Oerebro

ncbi_organism_name: Staphylococcus saccharolyticus

ncbi_submitter: Aarhus University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo, A.C. (CIAD)


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: US Food and Drug Administration


ncbi_country: China: Zhejiang

ncbi_isolation_source: cecal contents

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: uncultured Enterobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Enterocloster alcoholdehydrogenati

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: uncultured Hydrogenophaga sp.


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Opitutales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University


ncbi_organism_name: Paenibacillus ottowii

ncbi_submitter: Embrapa Maize and Sorghum


ncbi_organism_name: Halobacteriovorax sp. FRX-2

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Arthrobacter sp. NPDC093125

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella sp. s60131

ncbi_submitter: Zhejiang university


ncbi_organism_name: Pseudomonas shahriarae

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Elusimicrobiaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID UWx21316

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Kyung Hee University


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Stanford University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Staphylococcus capitis C87

ncbi_submitter: Broad Institute


ncbi_country: China: Beijing

ncbi_isolation_source: anammox reactor sludge

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Peking University


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Tongji University


ncbi_organism_name: Sulfuricurvum sp.

ncbi_submitter: University of Calgary


ncbi_country: China: Huainan

ncbi_isolation_source: coal samples cultured in anaerobic conditions in minimal salts plus yeast media

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Anhui University of Science & Technology


ncbi_country: USA: TX

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_assembly_name: freshwater MAG --- Loc080925-7m_bin-1192

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus lactis;sb__Lactococcus lactis subsp. lactis;x__Lactococcus lactis subsp. lactis JCM 5805 = NBRC 100933


ncbi_country: France

ncbi_isolate: commensal strain from anonymous patient (individual 1)

ncbi_submitter: University of Oxford, Oxford, England, UK


ncbi_submitter: Research Network Zoonotic Infectious Diseases


ncbi_submitter: Shandong University


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_country: USA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Florida


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Beduini sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella sp. S144_61417

ncbi_submitter: Zhejiang University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: South Korea: Seongbukcheon

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Shouchella miscanthi

ncbi_submitter: Korea university


ncbi_submitter: Spribille Lab


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 112 (4-5987253)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 112 (4-5987253)


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: groundwater

ncbi_organism_name: Desulfuromonas sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Paraburkholderia terricola

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil:Sao Paulo; Sao Paulo

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: China: Jilin

ncbi_isolation_source: xylem sap

ncbi_organism_name: Pantoea agglomerans

ncbi_strain_identifiers: CCNPK 873

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_isolation_source: food processing facility

ncbi_organism_name: Stenotrophomonas sp. PS02289

ncbi_submitter: Penn State University


ncbi_organism_name: Enterococcus faecium EnGen0140


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_isolation_source: EPS producer

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: University of Alberta


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Asaccharobacter sp.

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Thioalkalivibrio sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: South Korea: Jeonju

ncbi_isolation_source: Nuruk; Korean traditional beverage starter

ncbi_organism_name: Companilactobacillus nuruki

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_country: Denmark: Aalborg

ncbi_isolation_source: saliva

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: Peru: Lima

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: South Africa: Schoenmakerskop

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Richelia sp. SL_2_1

ncbi_submitter: University of Wisconsin, Madison


ncbi_country: Oman

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Sultan Qaboos University


ncbi_assembly_name: freshwater MAG --- Loc090519-5m_bin-1155

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Kocuria sp. CPCC 205261

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Kocuria;x__unclassified Kocuria;s__Kocuria sp. CPCC 205261


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: USA: Massachusetts;Boston;The Forsyth Institute

ncbi_organism_name: Candidatus Nanosynbacter sp. TM7-008

ncbi_submitter: The Forsyth Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;g__Candidatus Nanosynbacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;g__Candidatus Nanosynbacter;x__unclassified Candidatus Nanosynbacter;s__Candidatus Nanosynbacter sp. TM7-008


ncbi_country: USA: Sandusky; Ohio

ncbi_organism_name: Xanthomonas hortorum

ncbi_submitter: The Ohio State University


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Paracoccaceae bacterium


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: pond water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acidothermus cellulolyticus 11B

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Greece: Athens

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Unniversity of Queensland


ncbi_assembly_name: IMG-taxon 2593339152 annotated assembly

ncbi_organism_name: Ruminococcus albus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Butyricimonas paravirosa

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacillota bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Edaphobacter sp. HDX4

ncbi_submitter: Stellenbosch University


ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: USDA-ARS


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chthoniobacter flavus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Germany

ncbi_isolation_source: AFB-diseased colony

ncbi_submitter: Georg-August-University Goettingen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Paenibacillaceae;g__Paenibacillus;s__Paenibacillus larvae;sb__Paenibacillus larvae subsp. larvae;x__Paenibacillus larvae subsp. larvae DSM 25719


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 39 year old man who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: Rumen uncultured genome RUG14153

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Norway

ncbi_organism_name: Francisella noatunensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Micromonospora sp. NPDC004551

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: China: Guangzhou

ncbi_organism_name: Streptococcus parasuis

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Pseudonocardia alni

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli 6-175-07_S1_C2

ncbi_submitter: IGS


ncbi_country: Nigeria

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: South Korea:Namwon

ncbi_isolation_source: Canis lupus familiaris feces

ncbi_organism_name: Ligilactobacillus animalis

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_organism_name: Nonlabens sp.

ncbi_submitter: University of Southern California


ncbi_country: Poland: Warsaw

ncbi_submitter: Institute of Biochemistry and Biophysics of the Polish Academy of Sciences


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_isolation_source: Tissue sample

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: sludge from WWTP

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong University


ncbi_country: Canada

ncbi_isolation_source: biosolids

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Canadian Food Inspection Agency


ncbi_isolation_source: lung

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Leptospirillum ferriphilum

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Plautia stali symbiont

ncbi_submitter: The Open University of Japan


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Southampton


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Oklahoma City; OK

ncbi_isolation_source: cervix

ncbi_organism_name: Escherichia coli

ncbi_submitter: Children's Mercy Kansas City


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: poultry meat product

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Bacteriology, Microbiology, Osaka Institute of Public Health


ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Trichocoleus sp. DQ-U1

ncbi_submitter: Institute of Hydrobiology


ncbi_country: USA: Maryland

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Gymnodinialimonas mytili

ncbi_submitter: Hannam University


ncbi_organism_name: Kaistella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Weeksella virosa DSM 16922

ncbi_submitter: JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Weeksellaceae;g__Weeksella;s__Weeksella virosa;x__Weeksella virosa DSM 16922


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriae bacterium HGW-Ignavibacteriae-4


ncbi_organism_name: Enterococcus faecalis EnGen0091

ncbi_submitter: Broad Institute


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured Fusobacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Bilophila sp.


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Adlercreutzia sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: IMG-taxon 2634166340 annotated assembly

ncbi_organism_name: Streptomyces griseus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China:NanningCity; Guangxi Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Mouth

ncbi_organism_name: Streptococcus oralis ATCC 35037


ncbi_organism_name: Paraburkholderia sp. J8-2

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: Brazil: Uberaba

ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_country: India

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_organism_name: Methylophilus sp. Q8

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Oribacterium sp.


ncbi_country: South Korea: Hadong-gun; Gyeongsangnam-do

ncbi_isolation_source: gut

ncbi_organism_name: Poseidonibacter ostreae

ncbi_submitter: Nakdonggang National Institute of Biological Resources


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Victivallales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Michigan

ncbi_isolation_source: Hospital hot water tap

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_organism_name: Bordetella pertussis STO1-CHLA-0006

ncbi_submitter: JCVI


ncbi_country: USA: West Virginia

ncbi_organism_name: Marinilabilia salmonicolor


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sciensano


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: MORINAGA MILK INDUSTRY CO.,LTD.


ncbi_organism_name: Streptomyces sp. NPDC056524

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Russia: Republic of Buryatia

ncbi_isolation_source: coal

ncbi_organism_name: Bacillales bacterium

ncbi_submitter: Research Center of Biotechnology


ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Bosea sp. BE109

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. BE109


ncbi_isolation_source: Tracheal suction

ncbi_organism_name: Burkholderia pseudomallei HBPUB10134a

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: Col 20-PUJ

ncbi_submitter: Pontificia Universidad Javeriana


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolation_source: biofilm

ncbi_organism_name: Gordonia sp. UBA6487

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. UBA6487


ncbi_organism_name: Escherichia coli

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: California; Calistoga

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: France: Brittany

ncbi_isolation_source: lung

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Anses


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas sp. 19064969

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: Italy: Roma

ncbi_isolation_source: throat swab

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Camerino


ncbi_organism_name: Alteromonas sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Christensenella massiliensis

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: California

ncbi_isolation_source: stool sample

ncbi_submitter: USDA ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Thompson


ncbi_organism_name: Ponticoccus sp. SC2-30

ncbi_submitter: Shantou University


ncbi_isolation_source: Coconut

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000210


ncbi_submitter: University of Alabama Birmingham


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_country: Ghana

ncbi_isolation_source: Human sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: TU Delft


ncbi_country: USA: Minnesota

ncbi_organism_name: Neisseria sicca

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Pakistan

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Roseburia sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_isolation_source: soil

ncbi_organism_name: Microbacterium oxydans

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: Salt Lake City

ncbi_organism_name: Pseudoflavonifractor sp.

ncbi_submitter: Cleveland Clinic


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_organism_name: Thermoflexales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China:Zhejiang Province; Hangzhou

ncbi_isolation_source: rectal swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: India

ncbi_isolation_source: Saffron corm

ncbi_organism_name: Verrucosispora sp. ts21

ncbi_submitter: University of Jammu


ncbi_organism_name: Egicoccus sp. AB-alg2

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Nitrobacteraceae bacterium AZCC 2161

ncbi_strain_identifiers: AZCC 2161

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Belgium: Merelbeke

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter gandensis

ncbi_submitter: University of Gothenburg - CCUG


ncbi_assembly_name: Rumen uncultured genome RUG14894

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Spain: Madrid

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_country: China: Hong Kong

ncbi_isolation_source: Wound specimen

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: The University of Hong Kong


ncbi_country: Mongolia:Govi-Altai province; Taishir soum; Dalan bag; Khasagt khairkhan mountain

ncbi_organism_name: Actinocatenispora comari

ncbi_submitter: Toho university


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: bacterium

ncbi_submitter: Xiamen University


ncbi_isolate: SPRUCE 601

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_strain_identifiers: SPRUCE 601

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Paraprevotella clara

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_isolate: AOP23_AC1_coeur _bin _1

ncbi_organism_name: Pseudolactococcus laudensis

ncbi_strain_identifiers: AOP23_AC1_coeur _bin _1

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Desulfonema sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: uncultured Syntrophaceae bacterium


ncbi_organism_name: Arcobacter aquimarinus

ncbi_submitter: University of Padova


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Nakamurella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Eubacteriales bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Laval University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Shewanella algae

ncbi_submitter: Hemchandracharya North Gujarat University


ncbi_organism_name: Enterobacter sp. BB-069-C-ECC

ncbi_submitter: TRAPREA


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University hospital Lubeck


ncbi_submitter: The University of Auckland


ncbi_organism_name: Aliarcobacter butzleri


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__environmental samples;s__uncultured Candidatus Izemoplasmatales bacterium


ncbi_organism_name: uncultured Lentisphaeraceae bacterium


ncbi_organism_name: Sphingomonas sp. DC1100-1

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: Parvibaculales bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Vienna


ncbi_isolate: AOP34_AQ2_surf _bin _25

ncbi_organism_name: Microbacterium gubbeenense

ncbi_strain_identifiers: AOP34_AQ2_surf _bin _25


ncbi_organism_name: Candidatus Planktophila sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: USA: Florida

ncbi_isolation_source: blue hole oxygen minimum zone seawater 95 m-106 m

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_assembly_name: freshwater MAG --- Ki3-D3_bin-0208

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Alcaligenes endophyticus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Streptomyces vinaceus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Washington University in Saint Louis


ncbi_country: China

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University,Shanghai, China


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolate: SPRUCE 400

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_strain_identifiers: SPRUCE 400


ncbi_organism_name: Qipengyuania sp. RANM35

ncbi_submitter: St Aloysius College (Autonomous) Mangalore


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Oculatellaceae cyanobacterium Prado106

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Papua New Guinea: D Entrecasteaux Islands

ncbi_isolation_source: PNG CO2 seep-seep site

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Institute of Marine Science


ncbi_country: Lithuania: Vilnius

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: Portugal

ncbi_isolation_source: fish

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_organism_name: Vicingus sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: Faeces

ncbi_organism_name: Enterocloster aldenensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Burkholderia arboris

ncbi_submitter: University of Michigan


ncbi_isolation_source: marine solar saltern

ncbi_organism_name: Salegentibacter salarius

ncbi_submitter: Xiamen University


ncbi_country: Canada: Alberta

ncbi_isolation_source: feces

ncbi_submitter: Government of Alberta


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Fretibacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Pacific Ocean: East Pacific Rise; 9N Biotransect

ncbi_submitter: Ewha Womans University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;s__Bathymodiolus thermophilus thioautotrophic gill symbiont


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Maricaulis sp.

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: University of Saskatchewan


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O145:NM;x__Escherichia coli O145:NM str. 2010C-3517


ncbi_organism_name: Halothiobacillaceae bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Spirosoma fluviale

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BGI


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: HOE Legacy IIB net trap

ncbi_organism_name: Prochlorococcus sp. ALOHA_ZT_50

ncbi_submitter: SCOPE


ncbi_organism_name: Candidatus Krumholzibacteriia bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;x__unclassified Candidatus Krumholzibacteriia;s__Candidatus Krumholzibacteriia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Lacombe

ncbi_organism_name: Veillonellaceae bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Planctomycetota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Lebanon

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Fujita Health University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Escherichia albertii

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Candidatus Elulimicrobiales bacterium

ncbi_submitter: University of Iowa

ncbi_taxonomy: d__Bacteria;p__Candidatus Elulimicrobiota;c__Candidatus Elulimicrobia;o__Candidatus Elulimicrobiales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Elulimicrobiota;c__Candidatus Elulimicrobia;o__Candidatus Elulimicrobiales;x__unclassified Candidatus Elulimicrobiales;s__Candidatus Elulimicrobiales bacterium


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: The Ohio State University


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis H2754

ncbi_submitter: Broad Institute


ncbi_isolation_source: gastric mucosa

ncbi_organism_name: Helicobacter salomonis

ncbi_submitter: University of Antwerp, Belgium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_organism_name: Escherichia coli

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_country: China: Shenzhen

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: BGI


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Argentina: Victoria

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_country: USA: PA

ncbi_isolation_source: Lung

ncbi_organism_name: Legionella pneumophila subsp. pneumophila

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Rossellomorea vietnamensis

ncbi_submitter: Centro de Investigacion y de Estudios Avanzados del IPN - Unidad Irapuato


ncbi_isolation_source: human

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Public Health Ontario


ncbi_country: USA: Medina; OH; Medina County

ncbi_isolation_source: Shoot tissue

ncbi_organism_name: Erwinia amylovora


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Sun Yat-sen University


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: deep ocean sediment

ncbi_organism_name: Vreelandella profundi

ncbi_submitter: OUC


ncbi_country: Belgium

ncbi_submitter: Vrije Universiteit Brussel


ncbi_organism_name: Candidatus Tumulicola sp.


ncbi_organism_name: Bellilinea sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 0.2 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_organism_name: Methylotenera sp. N17

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: South Korea

ncbi_organism_name: Burkholderia glumae

ncbi_submitter: Seoul National University


ncbi_country: China

ncbi_isolation_source: bile

ncbi_organism_name: Pseudomonas sp. 18082551

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: Bangladesh

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_country: Australia: Victoria

ncbi_isolation_source: dairy farm

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Northumbria University


ncbi_submitter: SRCAMB


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_isolate: Helicobacter suis

ncbi_isolation_source: Rhesus macaque stomach

ncbi_organism_name: Helicobacter suis

ncbi_strain_identifiers: HSMm R08041b;Helicobacter suis

ncbi_submitter: GHENT UNIVERSITY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: household surface

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Thermophilibacter provencensis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Loyola University Chicago


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater effluent sample

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Enterobacter mori

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: USA: Eugene

ncbi_isolation_source: organic material

ncbi_organism_name: Chitinibacter sp. ZOR0017

ncbi_submitter: University of Oregon


ncbi_isolation_source: cattle blood

ncbi_organism_name: Anaplasma marginale str. St. Maries

ncbi_strain_identifiers: St. Maries

ncbi_submitter: University of Florida College of Veterinary Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;g__Anaplasma;s__Anaplasma marginale;x__Anaplasma marginale str. St. Maries


ncbi_submitter: Tarim University


ncbi_submitter: Center for Microbial Communities


ncbi_country: Pakistan

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Turkey

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Aarhus University


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Denmark

ncbi_strain_identifiers: Broiler parent76

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Thauera sp.

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_assembly_name: freshwater MAG --- A3_bin-283

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: Viet Nam: Hanoi

ncbi_isolation_source: bronchial fluid

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AMR research center, National Institute of Infectious Diseases


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Christian Medical College


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Desulfuromonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: VPI-5482 strain bearing Engineered Riboregulator and CRISPR Device

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Italy: Castelsardo

ncbi_organism_name: Oceanobacillus sp. Castelsardo

ncbi_strain_identifiers: Castelsardo

ncbi_submitter: UNIVERSITY OF THE BASQUE COUNTRY


ncbi_organism_name: Micromonospora sp. NPDC005686

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bergeyella cardium

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Candidatus Fermentithermobacillia;o__Candidatus Fermentithermobacillales;f__Candidatus Fermentithermobacillaceae;x__unclassified Candidatus Fermentithermobacillaceae;s__Candidatus Fermentithermobacillaceae bacterium


ncbi_assembly_name: freshwater MAG --- Ja1-D2_bin-1996

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: uncultured Lachnospira sp.


ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo AC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Porphyromonas sp.


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: the seqafrica consortium


ncbi_country: India: Delhi

ncbi_isolation_source: healthy skin

ncbi_organism_name: Brevibacterium casei S18

ncbi_submitter: Institute of Genomics and Integrative Biology


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV077

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Canada: Alberta

ncbi_isolation_source: chicken-abbatoir-Sporadic

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20090698


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: unknown

ncbi_organism_name: Omnitrophica bacterium GWA2_41_15

ncbi_submitter: UNIVERSITY OF JENA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Omnitrophica bacterium GWA2_41_15


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Clostridium tyrobutyricum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Sandia National Laboratories


ncbi_country: USA: Texas

ncbi_organism_name: Microbacterium sp. SORGH_AS_0344


ncbi_organism_name: Streptomyces sp. 2-6

ncbi_submitter: North Carolina State University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Moskow Lomosonov State University


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA: PA

ncbi_isolation_source: spleen mouse (Mus musculus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Czech Republic: Chronicare Mund Brno

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_isolation_source: Intestine

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Oceanicaulis sp.

ncbi_submitter: Tang lab


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Roseobacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: metagenome

ncbi_organism_name: Sphingobacterium sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Staphylococcus aureus W75234

ncbi_submitter: Broad Institute


ncbi_isolation_source: blood sample from a 70 year old woman who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Chryseobacterium ginsengisoli

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)