ncbi_organism_name: Atlantibacter sp. SORGH_AS_0304

ncbi_submitter: DOE Joint Genome Institute


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_level: Scaffold

ncbi_organism_name: Micromonospora tulbaghiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Japan: Tokyo

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: The University of Tokyo Hospital


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_assembly_level: Chromosome

ncbi_country: India: NGTC

ncbi_isolation_source: Raw chicken

ncbi_submitter: Indian Veterinary Research Institute


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


gtdb_representative: t

ncbi_country: USA: California

ncbi_organism_name: Rhodopseudomonas palustris

ncbi_submitter: Bellevue University


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Amylibacter sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: University of maryland


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1215

ncbi_submitter: Broad Institute


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Streptomyces sp. NBC_00562

ncbi_submitter: Technical University of Denmark


ncbi_country: Canada: Montreal

ncbi_isolation_source: Hospital sink

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Vaginal

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: USA: Massachesetts

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Collieribacteriota;s__Candidatus Collierbacteria bacterium CG_4_10_14_0_8_um_filter_43_86


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Ireland: Johnstown Castle; Wexford

ncbi_isolation_source: manure

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CM LAM KAN 1

ncbi_submitter: Maynooth University


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Spain: Hospital de Sabadell; Barcelona; Catalonia

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Facultat de Farmacia i Ciencies de l'Alimentacio; Universitat de Barcelona


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Staphylococcus sp.


ncbi_country: Russia: The Sea of Japan

ncbi_isolation_source: sandy sediment

ncbi_organism_name: Cobetia marina

ncbi_strain_identifiers: NRIC 0813

ncbi_submitter: G.B. Elyakov Pacific Institute of Bioorganic Chemistry

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Nanjing

ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_country: United Kingdom

ncbi_isolation_source: Bulk milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Zhejiang University


gtdb_type_species_of_genus: t

ncbi_country: Korea

ncbi_organism_name: Henriciella marina DSM 19595

ncbi_refseq_category: reference genome

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Prevotella sp.


ncbi_submitter: Finnish Food Authority


ncbi_organism_name: Planctomyces sp.

ncbi_submitter: University of Michigan


ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Yoonia sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: Antrihabitans spumae

ncbi_strain_identifiers: NCIMB 15450

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: China National Center for Food Safety Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Escherichia coli

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Flavobacterium sp. LB2P6

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Butyricicoccus pullicaecorum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Actinotignum sp. GS-2025f

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_submitter: The University of Tokyo


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Agathobaculum sp.


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Phage Research Center, Liaocheng University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: Pig 53

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Streptomyces fungicidicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universiti Putra Malaysia


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Bile

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


ncbi_country: Canada: Alberta

ncbi_organism_name: Methylicorpusculum sp.

ncbi_submitter: University of Calgary


ncbi_country: USA:Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: USA: Houston; TX

ncbi_isolation_source: vagina

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Seattle University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Surrey


ncbi_organism_name: Corynebacterium vitaeruminis

ncbi_submitter: University of Washington


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: USA: Cincinnati; Ohio

ncbi_isolation_source: drinking water

ncbi_organism_name: Sphingopyxis sp. H053

ncbi_submitter: US EPA


ncbi_isolation_source: Caecum

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG14672

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Subdoligranulum sp. APC924/74

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Microbispora bryophytorum

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom: Great Yarmouth

ncbi_isolation_source: surface coastal seawater

ncbi_organism_name: Desulfofustis sp.

ncbi_submitter: Ocean university of China


ncbi_assembly_name: Salmonella enterica CVM 43825 v1.0

ncbi_country: USA

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_organism_name: Campylobacter hyointestinalis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: digestive tract (UBERON:0001555); intestine (UBERON:0000160)

ncbi_organism_name: Lachnospiraceae bacterium UBA3404

ncbi_submitter: University of Queensland


ncbi_country: France

ncbi_isolation_source: cow raw milk

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_strain_identifiers: CIRM-BIA 1472

ncbi_submitter: Brigham Young University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Canada: Guelph

ncbi_isolation_source: soil

ncbi_submitter: University of Guelph


ncbi_organism_name: Neisseria meningitidis


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S25

ncbi_organism_name: Blautia sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institut Pasteur


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: rhizosphere soil of Cistus ladanifer plants

ncbi_organism_name: Siminovitchia terrae

ncbi_submitter: Anhui Agricultural University


ncbi_organism_name: Brevundimonas diminuta


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: unknown


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Nimes University Hospital


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium RIFCSPHIGHO2_02_FULL_39_13


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Anaerobutyricum soehngenii

ncbi_submitter: University of Aberdeen


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden

ncbi_isolation_source: Turdus philomelos

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Bath


ncbi_organism_name: Bifidobacterium breve NCFB 2258

ncbi_strain_identifiers: NCFB 2258

ncbi_submitter: University College Cork


ncbi_country: Mexico

ncbi_isolation_source: river water

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_country: China: Jiangsu

ncbi_isolation_source: gastrointestinal tract

ncbi_submitter: Yangzhou university


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: not available

ncbi_submitter: WTSI


ncbi_organism_name: Rhodococcus sp. 14-2686-1-2

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. 14-2686-1-2


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Brazil: Presidente Prudente

ncbi_isolation_source: Surveillance swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Jilin

ncbi_organism_name: Lactobacillus sp. W8087

ncbi_submitter: China Agricultural University


ncbi_country: USA: Iowa

ncbi_isolation_source: pleura

ncbi_organism_name: Streptococcus suis

ncbi_submitter: USDA-ARS


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_country: Brazil: Sao Paulo; Bertioga

ncbi_isolation_source: contaminated mangrove sediments

ncbi_organism_name: Rhodopirellula sp. MGV

ncbi_strain_identifiers: MGV

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: California

ncbi_organism_name: Rhodococcus sp. BP-148

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BP-148


ncbi_organism_name: Sinorhizobium medicae

ncbi_submitter: Washington State University Vancouver


ncbi_organism_name: Afifellaceae bacterium


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: China: Dongying

ncbi_isolation_source: Terrene

ncbi_organism_name: Exiguobacterium sp. s166

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. s166


ncbi_country: USA: Florida

ncbi_organism_name: Prescottella equi

ncbi_submitter: The Roslin Institute


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_isolation_source: plant rhizosphere

ncbi_organism_name: Pseudomonas hefeiensis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Czechoslovakia

ncbi_organism_name: Staphylococcus muscae

ncbi_submitter: Illinois Institute of Technology


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine water

ncbi_organism_name: Halomonas sp.

ncbi_submitter: Max planck institute for marine microbiology


ncbi_organism_name: uncultured Lentisphaerales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: uncultured Solibacteraceae bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Roseibium sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Teagasc


ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: water column

ncbi_organism_name: Vibrio sp. V08_P9A1T1

ncbi_submitter: Instituto de ecologia


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Thiomonas sp. 13-64-67

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp. 13-64-67


ncbi_country: India: Bangalore

ncbi_isolation_source: sputum

ncbi_submitter: Rajarajeswari Medical College and hospital


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Jiangsu Academy of Agricultural Sciences, Nanjing


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Nanjing University


ncbi_assembly_name: Rumen uncultured genome RUG14750

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-206

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Geminicoccus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: feces


ncbi_assembly_name: Rumen uncultured genome RUG10690

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Belgium

ncbi_isolation_source: ear otitis

ncbi_organism_name: Weissella confusa

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_country: Pakistan: Rawalpindi

ncbi_isolation_source: hospital

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: FDA


ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA: Wayne Co.; GA

ncbi_isolation_source: onion

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Maine

ncbi_isolation_source: hospital patient

ncbi_submitter: University of Maine at Presque Isle


ncbi_organism_name: Streptomyces sp. NBC_01336

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Democratic Republic of the Congo

ncbi_isolation_source: corroding offshore oil well

ncbi_organism_name: Dethiosulfovibrio peptidovorans DSM 11002

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_organism_name: Haliscomenobacter sp.

ncbi_submitter: Sun Yat-sen University


ncbi_country: Australia: Saint Lucia; Queensland Australia

ncbi_isolation_source: 0.22um filtered reactor supernatant

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium UBA925


ncbi_organism_name: Lacticaseibacillus casei

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: Fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSERM UMR 1137


ncbi_country: USA: California

ncbi_isolation_source: well water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: China: Shandong

ncbi_submitter: China Agricultural University


ncbi_organism_name: Neisseria sp. P0008.S004

ncbi_submitter: Rochester Institute of Technology


ncbi_country: USA: Texas

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_organism_name: Candidatus Ornithomonoglobus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Ornithomonoglobus;x__unclassified Candidatus Ornithomonoglobus;s__Candidatus Ornithomonoglobus sp.


ncbi_assembly_name: freshwater MAG --- VK_bin-0642

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10540

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Actinomycetospora sp.

ncbi_submitter: CAU


ncbi_organism_name: Paratractidigestivibacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Zhejiang university


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_country: USA: New York

ncbi_isolation_source: stool from individual AK

ncbi_organism_name: Segatella copri

ncbi_submitter: New York University


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Stanford University School of Medicine


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Kenya: Nairobi

ncbi_isolation_source: vaginal microbiome

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Saskatchewan


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Malaysia

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Dalian

ncbi_isolation_source: soil in Niujiao Mountain in DUT

ncbi_organism_name: Cupriavidus sp. SHE

ncbi_strain_identifiers: SHE

ncbi_submitter: Dalian University of Technology


ncbi_organism_name: Draconibacterium sp.

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: Netherlands

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 43P8

ncbi_submitter: Broad Institute


ncbi_organism_name: Streptomyces filamentosus NRRL 11379


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University of Rennes


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: China: Yangzhou

ncbi_isolation_source: stray dog feces


ncbi_country: China: Suzhou

ncbi_isolation_source: feces

ncbi_organism_name: Metaclostridioides mangenotii

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: Aerococcus urinaeequi

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Wisconsin

ncbi_isolation_source: nasal lavage

ncbi_organism_name: Micrococcus sp. HSID17228

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Winkia sp. ACRQY

ncbi_strain_identifiers: ACRQY

ncbi_submitter: NHGRI/NIH


ncbi_country: New Caledonia

ncbi_isolation_source: Ultramafic soil

ncbi_organism_name: Streptantibioticus ferralitis

ncbi_submitter: Kasetsart University


ncbi_country: Bangladesh

ncbi_isolation_source: Other body fluids

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Australia

ncbi_isolation_source: cattle hide

ncbi_submitter: Curtin University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_submitter: Universite de Limoges


ncbi_organism_name: Campylobacter coli

ncbi_submitter: WAGENINGEN UR


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Chicago


ncbi_country: USA: Bronx; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Nanjing University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG737

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Leucothrix mucor DSM 2157

ncbi_submitter: JGI


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Parabacteroides goldsteinii


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_organism_name: Klebsiella sp. JB_Kp016

ncbi_submitter: Max Rubner-Institut


ncbi_country: Hong Kong

ncbi_isolation_source: blood

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Blautia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: Faeces

ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Gastranaerophilales;f__;g__;s__Candidatus Gastranaerophilus phascolarcticola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__Candidatus Gastranaerophilus;s__Candidatus Gastranaerophilus phascolarcticola


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: animal feces

ncbi_organism_name: Raoultella ornithinolytica


ncbi_isolation_source: extraintestinal site

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Lactococcus petauri


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Oklahoma


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Empedobacter falsenii

ncbi_submitter: Yangzhou University


ncbi_organism_name: Acidobacteriota bacterium


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Agathobaculum sp.


ncbi_organism_name: Streptomyces sp. NPDC048258

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Pedobacter lithocola

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Moraxella sp. 179-F 1C4 NHS

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Moraxella;x__unclassified Moraxella;s__Moraxella sp. 179-F 1C4 NHS


ncbi_organism_name: Treponema putidum

ncbi_strain_identifiers: OMZ 730

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: Vicinamibacteria bacterium


ncbi_organism_name: Campylobacter jejuni


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Candidatus Solibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__Solibacteraceae;g__Candidatus Solibacter;x__environmental samples;s__uncultured Candidatus Solibacter sp.


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Firmicutes bacterium TM09-10

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium TM09-10


ncbi_country: Antarctica: Eastern Antarctica; McMurdo Dry Valleys

ncbi_isolate: MDV bin9

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: MDV bin9


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Proteobacteria bacterium UBA7447

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA7447


ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Terracidiphilus sp.


ncbi_organism_name: Candidatus Scatavimonas sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Scatavimonas;x__unclassified Candidatus Scatavimonas;s__Candidatus Scatavimonas sp.


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_country: Brazil:Minas Gerais; Uberlandia

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Germany: Wietze

ncbi_isolation_source: oil-contaminated soil

ncbi_organism_name: Smithella sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: porcine rectal swab

ncbi_organism_name: Chlamydia suis

ncbi_submitter: Functional Genomics Genter Zurich


ncbi_isolation_source: Air filter

ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: China

ncbi_isolation_source: Respiratory swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: Switzerland

ncbi_isolation_source: Gruyere

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Bern


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Microbacterium sp.


ncbi_country: Pakistan

ncbi_isolation_source: rhizospheric soil

ncbi_organism_name: Streptomyces sp. BR123

ncbi_submitter: NIBGE


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Dasytiphilus stammeri

ncbi_submitter: Max Planck Institute for Chemical Ecology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Dasytiphilus;s__Candidatus Dasytiphilus stammeri


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Holophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Brazil: Dourados

ncbi_organism_name: Verrucomicrobiota bacterium


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Trueperella bernardiae

ncbi_submitter: EMG


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: US Naval Medical Research Unit EURAFCENT, Cairo Detachment


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Alloprevotella tannerae

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_assembly_name: Rumen uncultured genome RUG433

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Providencia alcalifaciens

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_submitter: Dutch CPE surveillance Study Group


ncbi_country: Belgium

ncbi_submitter: KU Leuven


ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Erythrobacter sp.


ncbi_organism_name: uncultured Aquiluna sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;x__Luna cluster;x__Luna-1 subcluster;g__Aquiluna;x__environmental samples;s__uncultured Aquiluna sp.


ncbi_organism_name: Bradyrhizobium sp. SZCCHNRI1029

ncbi_submitter: The Chinese University of Hong Kong


ncbi_assembly_name: freshwater MAG --- Umea2_bin-1848

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: BILS


ncbi_country: Australia: Queenscliff NSW

ncbi_isolation_source: Marine Intertidal

ncbi_organism_name: Synechocystis sp. CS-94

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_country: Japan:Okinawa; Hatoma Knoll

ncbi_isolation_source: marine hydrothermal vent chimney

ncbi_organism_name: Nitratiruptor sp. YY08-26

ncbi_submitter: Department of Subsurface Geobiological Analysis and Research, Japan Agency for Marine-Earth Science and Technology


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Mexico

ncbi_isolation_source: blood

ncbi_submitter: UNIVERSIDAD EL BOSQUE


ncbi_country: Brazil

ncbi_isolation_source: kidney

ncbi_organism_name: Francisella orientalis

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_organism_name: Acinetobacter colistiniresistens

ncbi_submitter: Ewha Womans University


ncbi_country: China:Hubei; Wuhan

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Yoonia sediminilitoris

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Saudi Arabia: King Abdullah Monument; Thuwal

ncbi_organism_name: Mangrovivirga cuniculi

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Bacillales bacterium UBA4895

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Poland: Warszawa

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: Avicennia schaueriana

ncbi_organism_name: Salinicola endophyticus

ncbi_submitter: UFSC


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Guyparkeria sp.

ncbi_submitter: McGill University


ncbi_organism_name: Terriglobales bacterium


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: SC


ncbi_country: USA: WA

ncbi_isolation_source: aquifer at Department of Energy Hanford 100H site

ncbi_organism_name: Pelosinus sp. HCF1

ncbi_submitter: LBNL Sustainable Systems Scientific Focus Area


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Salmonella enterica subsp. enterica


ncbi_isolation_source: lung autopsy

ncbi_organism_name: Mycobacteroides abscessus 5S-0817

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Germany

ncbi_isolation_source: military dog fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Listeria monocytogenes


ncbi_country: Estonia

ncbi_submitter: University of Tartu


ncbi_country: China: Beijing

ncbi_isolation_source: sheep meat

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Russia: Moscow

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-112

ncbi_submitter: Broad Institute


ncbi_country: Bangladesh

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia sp. HH26CH

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: CINVESTAV


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: USA: CA

ncbi_isolation_source: Raw Milk

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_country: Lithuania

ncbi_isolation_source: fecal sample

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Lithuanian University of Health Sciences


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Paenibacillus sp. NRS-1775

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Brazil

ncbi_organism_name: Paraburkholderia youngii

ncbi_submitter: University of Pretoria


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: huazhong agricultural university


ncbi_country: USA: MD

ncbi_isolation_source: Baby Wipes

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_organism_name: Cumulibacter sp.

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_country: USA: NE

ncbi_isolation_source: porcine pig intestine small

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Malaysia

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: tissue l ear

ncbi_organism_name: Staphylococcus sp. HMSC067B04

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Aquiluna sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Pakistan

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Weissella koreensis

ncbi_submitter: World Institute of Kimchi


ncbi_organism_name: Listeria cossartiae subsp. cayugensis

ncbi_submitter: University of Tennessee

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria cossartiae;sb__Listeria cossartiae subsp. cayugensis


ncbi_assembly_name: Rumen uncultured genome RUG12975

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Oceanospirillaceae bacterium

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_country: Kenya: Busia County

ncbi_isolation_source: soil

ncbi_organism_name: Rhizobium phaseoli

ncbi_submitter: Plant physiology


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Poland: podkarpackie

ncbi_isolation_source: hospital

ncbi_submitter: Institute of Biochemistry and Biophysics Polish Academy of Sciences


ncbi_organism_name: uncultured Allobaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: blood sample of melioidosis patient

ncbi_organism_name: Burkholderia pseudomallei OS

ncbi_strain_identifiers: OS

ncbi_submitter: Universiti Malaya, Kuala Lumpur


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: Spain: Cantabria

ncbi_isolation_source: Cave walls

ncbi_organism_name: Streptomyces sp. AP-93

ncbi_submitter: Instituto de Recursos Naturales y Agrobiologia


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA:Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: >63 micron

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: metagenome

ncbi_organism_name: Candidatus Alloscillospira gallinarum

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Alloscillospira;s__Candidatus Alloscillospira gallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Alloscillospira;s__Candidatus Alloscillospira gallinarum


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Switzerland

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_country: Greece

ncbi_isolation_source: urine

ncbi_submitter: University Hospital of Larissa


ncbi_isolation_source: water

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_country: China: Zhejiang

ncbi_isolation_source: Chicken Droppings

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces californicus

ncbi_strain_identifiers: NRRL B-2988

ncbi_submitter: University of Illinois


ncbi_country: China: Ningbo

ncbi_isolation_source: Peritoneal dialysis fluid

ncbi_organism_name: Gordonia sputi

ncbi_submitter: Ningbo First Hospital


ncbi_country: USA: California

ncbi_organism_name: Pseudomonas cannabina pv. alisalensis

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas cannabina;x__Pseudomonas cannabina pv. alisalensis

ncbi_type_material_designation: assembly from pathotype material


ncbi_isolation_source: nasal

ncbi_organism_name: Streptococcus suis

ncbi_submitter: China Agriculture University


ncbi_country: Canada:Terrace; Lakelse Hot Spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Acidothermus cellulolyticus

ncbi_submitter: University of British Columbia


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Chile

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter sp. CFSAN093237

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: FL

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_country: China: Guangdong

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Liaocheng University


ncbi_organism_name: Bacillus nitratireducens

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: bacterial endocarditis

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_assembly_name: BSN38-MSSA1 Closure

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_organism_name: uncultured Treponemataceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA

ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: Yale University School of Medicine


ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__;c__;o__Candidatus Zhuqueibacterales;f__Candidatus Zhuqueibacteraceae;g__Candidatus Coneutiohabitans;s__Candidatus Coneutiohabitans thermophilus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;o__Candidatus Zhuqueibacterales;f__Candidatus Zhuqueibacteraceae;g__Candidatus Coneutiohabitans;s__Candidatus Coneutiohabitans thermophilus


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Chlorobium sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: rhizosphere

ncbi_organism_name: Streptomyces sp. S4.7

ncbi_submitter: Uni Bielefeld


ncbi_country: South Korea: Gangwon

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Food-borne Pathogen Omics Research Center, FORC


ncbi_organism_name: Geobacteraceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: USA: Tatoosh Island; Washington

ncbi_isolation_source: kelp blade whole tissue extract

ncbi_organism_name: Dokdonia sp.

ncbi_submitter: University of Washington-Seattle


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Chrysiogenales bacterium


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Ruminococcaceae bacterium UBA3812

ncbi_submitter: University of Queensland


ncbi_organism_name: Mycobacterium sp. pUA109

ncbi_submitter: Engelhardt Institute of Molecular Biology RAS


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;s__Candidatus Falkowbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_37_18


ncbi_country: USA: WI

ncbi_isolation_source: Skin/Wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Wisconsin State Laboratory of Hygiene


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Univeristy of Pretoria and National Health Laboratory Services


ncbi_organism_name: Xanthomonas hortorum NBC5720

ncbi_submitter: University of Florida


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Northern Jiangsu People's Hospital Afiliated toYangzhou University/Clinical Medical College, Yangzho


ncbi_organism_name: uncultured Prevotella sp.


ncbi_submitter: Niigata University Graduate School ofMedical and Dental Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus NN50


ncbi_country: Spain: Asturias

ncbi_isolation_source: blood

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: wound swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Heidelberg University Hospital


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Shanghai

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: University of California, Berkeley


ncbi_country: United Kingdom:England

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: UC San Diego


ncbi_organism_name: Gallibacterium anatis

ncbi_submitter: Clinic for Poultry and Fish Medicine - Vetmeduni Vienna


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Canada

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Nocardia farcinica

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_submitter: EMBL-EBI


ncbi_country: Denmark

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Wageningen University & Research


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Amesiibacteriota;s__Candidatus Amesbacteria bacterium GW2011_GWB1_47_19


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: freshwater MAG --- C24_bin-0237

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Enterobacter sp. 22696

ncbi_submitter: Yantai University


ncbi_organism_name: Pseudophaeobacter arcticus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Flavobacterium faecale

ncbi_submitter: Chonnam national university


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Spirochaetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;x__environmental samples;s__uncultured Spirochaetota bacterium


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Choladocola sp.

ncbi_submitter: Christian-Albrechts-University Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Choladocola;x__unclassified Candidatus Choladocola;s__Candidatus Choladocola sp.


ncbi_organism_name: Actinomadura geliboluensis


ncbi_organism_name: [Eubacterium] siraeum


ncbi_organism_name: uncultured Flavobacterium sp.


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Xanthomonas euvesicatoria pv. euvesicatoria

ncbi_submitter: University of Florida


ncbi_assembly_name: freshwater MAG --- Kiruna3_bin-2800

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_country: USA: Decatur; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: uncultured Brachymonas sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Animal and Plant Health Agency


ncbi_organism_name: uncultured Solibacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: UNITED STATES ARMY MEDICAL RESEARCH DIRECTORATE-KENYA


ncbi_organism_name: uncultured Conexibacteraceae bacterium


ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: Okayama University


ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: EPFL


ncbi_country: Egypt

ncbi_isolation_source: Raw milk cheese

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Chicken breast

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: Algeria

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: IRD


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: China

ncbi_isolation_source: stool sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Kytococcus sedentarius

ncbi_submitter: EMG


ncbi_organism_name: Pallidibacillus thermolactis subsp. kokeshiiformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: Spain

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus C3452

ncbi_submitter: Broad Institute


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Senegal: Niokolo-Koba National Park

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_country: Brazil: Sao Paulo; Hospital das Clinicas

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter baumannii 3909

ncbi_submitter: University of Birmingham


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 301

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_assembly_name: Variovorax sp. WDL-1

ncbi_isolation_source: linuron-contaminated soil

ncbi_organism_name: Variovorax sp. WDL1

ncbi_submitter: LEIBNIZ INSTITUTE FOR BALTIC SEA RESEARCH


ncbi_country: Puerto Rico: Patillas

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_country: South Korea:Busan

ncbi_isolation_source: Olive flounder rearing tank sediment

ncbi_organism_name: Massilia sp. MB5

ncbi_submitter: National Institute of Fisheries Science


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Chitinophagales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;x__environmental samples;s__uncultured Chitinophagales bacterium


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Singapore

ncbi_isolation_source: supermarket

ncbi_submitter: SCELSE, Nanyang Technological University, Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Trento


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Coriobacteriales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Malaysia

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_isolation_source: burned soil

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Colorado State University


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Citrobacter sp. BIDMC108

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter;x__Citrobacter freundii complex;x__unclassified Citrobacter freundii complex;s__Citrobacter sp. BIDMC108


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola coprocola


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Innoviva Specialty Therapeutics


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Clostridium sp. CAG:590

ncbi_submitter: DTU


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_country: South Korea: Buyeo

ncbi_isolation_source: feces

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 3201 hospital, Hanzhong


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Georgia

ncbi_isolation_source: pig feces

ncbi_organism_name: Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptococcus canis

ncbi_submitter: FU berlin


ncbi_country: USA: IA

ncbi_isolation_source: root

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Norway

ncbi_organism_name: Dyadobacter sandarakinus

ncbi_submitter: Wuhan University


ncbi_country: China: Neimenggu

ncbi_isolation_source: soil

ncbi_organism_name: Nocardia rosealba

ncbi_submitter: School of life science


ncbi_organism_name: Pseudomonas sp. HS-2

ncbi_submitter: Dalian University of Technology


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Silicimonas algicola

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_country: Canada: Lacombe

ncbi_organism_name: bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile Y215

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: Roseburia sp.

ncbi_submitter: University of Queensland


ncbi_country: Lebanon

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: LAU


ncbi_country: Germany

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: 2nd Faculty of Medicine, Charles University and Motol University Hospital


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Lithuania

ncbi_isolation_source: raw cow milk

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Lithuanian University of Health Sciences


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Stenotrophomonas indicatrix


ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Denmark

ncbi_organism_name: Campylobacter curvus

ncbi_submitter: USDA, ARS, WRRC


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: Russia:Vologda Region

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptomyces rhizosphaericus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Amycolatopsis granulosa

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Parabacteroides merdae


ncbi_country: Netherlands

ncbi_isolation_source: Blood


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: South Korea: Busan

ncbi_isolation_source: Intestine content

ncbi_organism_name: Rhodobacteraceae bacterium SC52

ncbi_submitter: Pukyong National University


ncbi_organism_name: Campylobacter fetus

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_assembly_name: IMG-taxon 2602042025 annotated assembly

ncbi_organism_name: Desulfuromonas thiophila

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Japan: Tokyo Bay; Honshu

ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: University of Hawaii-Manoa


ncbi_country: USA: Utah; Bear River Refuge

ncbi_isolation_source: water

ncbi_organism_name: Francisella philomiragia

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Israel

ncbi_isolation_source: mastitis

ncbi_organism_name: Escherichia coli

ncbi_submitter: Heriot-Watt University


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: Patient

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: ROSLIN


ncbi_organism_name: Janthinobacterium sp. GMG1

ncbi_submitter: Karadeniz Technical University


ncbi_country: Japan

ncbi_isolation_source: honey

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: National Agriculture and Food Research Organization


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Desulfuromonas sp.

ncbi_submitter: University of Waterloo


ncbi_country: China: Guizhou

ncbi_isolation_source: patient with paratyphoid fever

ncbi_submitter: State Key Laboratory for Infectious Disease Prevention and Control, and National Institute for Communicable Disease Control and Prevention, ChineseCenter for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A;x__Salmonella enterica subsp. enterica serovar Paratyphi A str. GZ9A00052


ncbi_organism_name: Simonsiella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Rhodosalinus sediminis

ncbi_submitter: EMG


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_name: Rumen uncultured genome RUG13239

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Thailand: Lamphun

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Shigella sonnei

ncbi_submitter: JCVI


ncbi_country: USA: New York

ncbi_isolation_source: milk

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cornell University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Sao Paulo - Faculty of Pharmacy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_submitter: National Institute for Public Health and the Environment


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: CAU


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Eubacterium ventriosum

ncbi_submitter: BGI


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Segatella buccae

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Shanxi Province

ncbi_isolation_source: underground water

ncbi_organism_name: Sedimentibacter sp. SX930

ncbi_submitter: Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp. SX930


ncbi_country: Colombia

ncbi_isolation_source: blood

ncbi_submitter: UNIVERSIDAD EL BOSQUE


ncbi_country: China: Hangzhou

ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella sp. S090_02723

ncbi_submitter: Zhejiang University


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Bacteriovoracaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecium R497

ncbi_submitter: Washington University


ncbi_organism_name: Thermopolyspora flexuosa

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella michiganensis


ncbi_country: Switzerland: Basel

ncbi_isolation_source: waste water

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_country: Morocco: Rabat-Sale-Zemmour-Zaer; Khemisset Province

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Gallibacterium anatis


ncbi_organism_name: Enterobacter sp.


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Runella sp.

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterococcus faecalis EnGen0369

ncbi_submitter: Broad Institute


ncbi_isolation_source: Mariane macroalgea Saccharina sp.

ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Pakistan

ncbi_isolation_source: alcohol foam dispenser in hospital intensive care unit

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: New Zealand

ncbi_organism_name: Leptospira borgpetersenii serovar Ballum

ncbi_submitter: Massey University


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus M39260


ncbi_strain_identifiers: NCPPB 3146

ncbi_submitter: University of Oxford

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas gingeri;x__Pseudomonas gingeri NCPPB 3146 = LMG 5327


ncbi_isolation_source: Original isolate from Factory - External Area

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Surrey


ncbi_country: USA

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG11

ncbi_submitter: Environmental Microbiology Lab


ncbi_country: China: Zhejiang

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Streptococcus sp.

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: stool sample

ncbi_organism_name: Shigella dysenteriae

ncbi_submitter: icddr,b


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Agathobaculum sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: sub-seafloor sulfide deposits

ncbi_organism_name: bacterium BMS3Bbin06

ncbi_submitter: JAMSTEC


ncbi_organism_name: Piscibacillus salipiscarius

ncbi_strain_identifiers: TISTR 1571

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Leibniz Institute of Photonic Technology


ncbi_submitter: UTRECHT UNIVERSITY


ncbi_submitter: University of the Witwatersrand


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Weifang People's Hospital


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolate: SPRUCE 121

ncbi_strain_identifiers: SPRUCE 121

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;o__Candidatus Krumholzibacteriales;f__Candidatus Krumholzibacteriaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;o__Candidatus Krumholzibacteriales;f__Candidatus Krumholzibacteriaceae;x__unclassified Candidatus Krumholzibacteriaceae;s__Candidatus Krumholzibacteriaceae bacterium


ncbi_organism_name: Pandoraea pneumonica

ncbi_submitter: Hainan General Hospital


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Seawater

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Denmark: Haderslev

ncbi_isolation_source: activated sludge from Hade_18-Q3-R52-61

ncbi_organism_name: Cellvibrionales bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 3 / C; 5m depth; 0.2 filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokubacteria bacterium GWC2_70_24


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy

ncbi_isolation_source: Broiler carcasses

ncbi_submitter: University of Bologna


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_organism_name: Brevundimonas staleyi

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Acidaminococcus timonensis


ncbi_isolation_source: human feces metagenome


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_isolation_source: sputum

ncbi_submitter: Muenster University Hospital


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Ardenticatenaceae bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: burned soil

ncbi_organism_name: Massilia sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Burkholderiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Salmonella sp. fjx14s17

ncbi_submitter: Food safety


ncbi_organism_name: Segatella copri

ncbi_submitter: Research Institute for Microbial Diseases, Osaka University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Panama: Boquisco

ncbi_isolation_source: termite gut

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: vagina

ncbi_organism_name: Megasphaera hutchinsoni

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Algeria: Bejaia

ncbi_isolation_source: Lettuce

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ANSES


ncbi_country: Australia

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia sp. 2002721687

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: RIKEN-BRC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Jiangsu

ncbi_isolation_source: sediment

ncbi_organism_name: Bradyrhizobium sediminis

ncbi_submitter: Nanjing Forestry University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Melbourne

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R165;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER