ncbi_organism_name: Phocaeicola vulgatus


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: USA: Metropolitan Atlanta

ncbi_genome_representation: full

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae GA40410

ncbi_submitter: Institute for Genome Sciences


ncbi_assembly_level: Scaffold

ncbi_country: Philippines

ncbi_isolation_source: wound abscess

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: St. Luke's Medical Center


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: throat

ncbi_organism_name: Chlamydia pneumoniae

ncbi_submitter: University of Vienna


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus CO-99


ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_country: USA

ncbi_isolation_source: sediment

ncbi_organism_name: Francisella philomiragia

ncbi_submitter: Northern Arizona University


ncbi_genome_category: derived from metagenome

ncbi_organism_name: Duodenibacillus massiliensis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus OCMM6071

ncbi_submitter: Broad Institute


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M2278


ncbi_country: India

ncbi_isolation_source: ETA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Christian Medical College


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Mycoplasmopsis synoviae

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Candidatus Nanosynbacter lyticus

ncbi_submitter: Clinical Oral Microbiome Research Center

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;g__Candidatus Nanosynbacter;s__Candidatus Nanosynbacter lyticus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;g__Candidatus Nanosynbacter;s__Candidatus Nanosynbacter lyticus


ncbi_assembly_name: freshwater MAG --- KT_bin-2590

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Paenibacillus larvae

ncbi_submitter: USDA-ARS-NCAUR


gtdb_representative: t

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: University of Utah


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rissen


ncbi_country: South Korea: Seoul

ncbi_isolation_source: soil

ncbi_organism_name: Methylobacterium terrae

ncbi_refseq_category: reference genome

ncbi_submitter: Seoul Women's University

ncbi_type_material_designation: assembly from type material


ncbi_country: Finland

ncbi_submitter: University of Queensland


ncbi_country: USA: California

ncbi_isolation_source: xylem

ncbi_organism_name: Xylella fastidiosa

ncbi_submitter: Auburn University


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Institut Pasteur of Madagascar


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Megasphaera sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Selenomonas sp.


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Roseibium sp.

ncbi_submitter: University of Southern California


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Rhodanobacter sp. FW106-PBR-LB-2-11

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Rakuno Gakuen University; Mansoura University; Zewail City of Science and Technology


ncbi_country: Lebanon

ncbi_organism_name: Brucella sp. CMUL 013

ncbi_strain_identifiers: CMUL 013

ncbi_submitter: LAU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;x__unclassified Brucella;s__Brucella sp. CMUL 013


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Klebsiella sp. P1CD1

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Jyvaskyla


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Veillonella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Acetobacter pasteurianus NBRC 3279

ncbi_strain_identifiers: NBRC 3279

ncbi_submitter: Yamaguchi University


ncbi_organism_name: uncultured Lachnotalea sp.


ncbi_organism_name: Actinoplanes utahensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Herbinix sp.

ncbi_submitter: University of Waterloo


ncbi_country: Egypt: Alexandria

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of East Anglia


ncbi_country: Canada: Alberta

ncbi_isolation_source: tissue sample from feedlot cattle

ncbi_organism_name: Histophilus somni

ncbi_submitter: University of Calgary


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester

ncbi_submitter: Shandong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Candidatus Fermentithermobacillia;o__Candidatus Fermentithermobacillales;f__Candidatus Fermentithermobacillaceae;x__unclassified Candidatus Fermentithermobacillaceae;s__Candidatus Fermentithermobacillaceae bacterium


ncbi_country: Cuba: Gardens of the Queen

ncbi_isolation_source: mucus

ncbi_organism_name: Vibrio sp. bablab_jr001

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Bulgaria

ncbi_isolation_source: Black sea water

ncbi_organism_name: Psychrilyobacter sp. S5

ncbi_submitter: SIAM


ncbi_organism_name: uncultured Porphyrobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mycoplasma hafezii

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: national health research institutes


ncbi_submitter: National Institutes of Health, Malaysia


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID 4447

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Pseudomonas sp. Z1-29

ncbi_submitter: KAUST


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_organism_name: Eudoraea sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Saint-Louis Hospital


ncbi_isolate: SPRUCE 25

ncbi_organism_name: Gemmatimonadales bacterium

ncbi_strain_identifiers: SPRUCE 25

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptosporangium canum

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_country: China: Longshenao Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Bacillus cereus

ncbi_submitter: University of Zurich


ncbi_organism_name: Streptomyces sioyaensis


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Pasteur institute of Tunisia


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Neisseria elongata

ncbi_submitter: EMG


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Toe web space Swab

ncbi_organism_name: Corynebacterium sp. p3-SID1241

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Caproicibacter sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Weihai

ncbi_isolation_source: marine sediment

ncbi_organism_name: Gelidibacter maritimus

ncbi_submitter: Shandong University,Weihai


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Xiamen University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG13897

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Brazil: Sao Paulo

ncbi_organism_name: Escherichia coli

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hadar


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: China: Guangzhou

ncbi_isolation_source: hospital patient with urinary tract infection

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: Lawrence Berkeley National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: Florida; Fort Landerdale; National Park

ncbi_isolation_source: ditch

ncbi_organism_name: Thiococcus pfennigii

ncbi_strain_identifiers: DSM 228

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


gtdb_type_species_of_genus: t

ncbi_country: Japan:Hokkaido; Sapporo; Jozankei hot spring

ncbi_isolation_source: microbial mat

ncbi_organism_name: Sulfurivermis fontis

ncbi_submitter: The Institute of Low Temperature Science, Hokkaido University


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella sp. S134_54621


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Holosporaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Lawsonibacter pullicola

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Czech Republic:Prague

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: COMBACTE


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Enterococcus sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: France

ncbi_isolation_source: stools

ncbi_organism_name: Campylobacter coli

ncbi_submitter: CHU de Bordeaux


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond H1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: University of Montreal


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: University of Zurich


ncbi_organism_name: Enterococcus durans

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_country: Portugal: Leiria

ncbi_isolation_source: river water

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Universidade de Aveiro


ncbi_country: China

ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Shenzhen Institute of Guangdong Ocean University


ncbi_isolation_source: human skin

ncbi_organism_name: Streptococcus canis

ncbi_submitter: NIH/NHGRI


ncbi_country: USA: Lake Washington

ncbi_organism_name: Bosea sp. 124

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. 124


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cf136

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_assembly_level: Chromosome

ncbi_strain_identifiers: BGSC 4BD1

ncbi_submitter: Naval Medical Research Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar huazhongensis;x__Bacillus thuringiensis serovar huazhongensis BGSC 4BD1


ncbi_assembly_name: IMG-taxon 2687453677 annotated assembly

ncbi_organism_name: Chitinophaga sp. CF118

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_organism_name: Comamonas thiooxydans

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: EMG


ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; >63 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Streptomyces sp. NPDC005775

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Schaalia odontolytica


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Lausanne


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Guangxi

ncbi_isolation_source: plant

ncbi_organism_name: Nocardioides bruguierae

ncbi_submitter: Life sciences Institute


ncbi_country: Italy: Naples

ncbi_isolation_source: oropharyngeal swab

ncbi_organism_name: Neisseria flavescens

ncbi_strain_identifiers: CNF

ncbi_submitter: CEINGE Biotecnologie Avanzate s.c.a r.l., via Gaetano Salvatore 486-80145-Napoli


ncbi_country: USA: Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Bacillus sp. hb116

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. hb116


ncbi_assembly_name: freshwater MAG --- MJ130820A_bin-108

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Empedobacter brevis


ncbi_organism_name: Deinococcus indicus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: seawater surrounding coral Acropora digitifera under thermal stress

ncbi_organism_name: Phaeobacter italicus

ncbi_submitter: Shenzhen Institute of Guangdong Ocean University


ncbi_country: USA: California

ncbi_strain_identifiers: UCI 55

ncbi_submitter: USDA-ARS


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of East Anglia


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: bacterium

ncbi_submitter: Inha University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_organism_name: Dyella sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: New Zealand: Hikurangi Margin

ncbi_isolation_source: Glendhu Ridge methane seep

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: GNS Science


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: South Korea: South Sea

ncbi_isolation_source: sea water

ncbi_organism_name: Aurantibacter aestuarii

ncbi_submitter: Second Institute of Oceanography, State Oceanic Administration


ncbi_organism_name: Yersinia pestis CA88-4125

ncbi_submitter: ERIC


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Waterloo


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: France

ncbi_isolation_source: lymph node

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: China: Sichuang

ncbi_isolation_source: pork trim

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_isolation_source: urine sample

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: CHU de Bicetre


ncbi_organism_name: Escherichia coli

ncbi_submitter: EMG


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Chloroflexaceae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus


ncbi_assembly_name: freshwater MAG --- MJ111018A_bin-771

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Elusimicrobia bacterium

ncbi_submitter: BILS


ncbi_country: USA: VA

ncbi_isolation_source: Clinical isolate

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Olleya sp. Ti.3.14

ncbi_submitter: University of Chicago


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: healthy adult 3C

ncbi_organism_name: Roseburia sp. CAG:18_43_25


ncbi_country: China: Beijing

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Beijing Hospital, Beijing


ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Myanmar: Yangon

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Department of Medical Research


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: United Kingdom

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Stanley


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudoflavonifractor sp.

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Italy: Florence

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_isolation_source: human gut

ncbi_organism_name: Fusobacterium mortiferum

ncbi_submitter: EMG


ncbi_country: China

ncbi_isolation_source: beach sediment

ncbi_organism_name: Atopomonas sediminilitoris

ncbi_submitter: Zhejiang University


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Butyricicoccus sp.

ncbi_submitter: University of Minnesota


ncbi_country: United Kingdom:Midlands

ncbi_strain_identifiers: Bir 329

ncbi_submitter: SC


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: China: Guangdong

ncbi_isolation_source: Gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sun Yat-sen University


ncbi_assembly_name: Salmonella enterica CVM N51246 v1.0

ncbi_country: USA: CO

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_country: Panama: Gamboa

ncbi_organism_name: Pseudonocardia sp. Ae717_Ps2

ncbi_submitter: University of East Anglia


ncbi_country: USA: Washington

ncbi_isolation_source: stool

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: India: Uttar Pradesh; Varanasi; Naipura Khurd

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1851R

ncbi_submitter: Broad Institute


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F63750


ncbi_country: USA: Arkansas

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Northern Illinois University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Lentibacter algarum

ncbi_submitter: Japan Agency for Marine-Earth Science and technology


ncbi_country: South Africa: Ballito Bay

ncbi_isolation_source: bone tissue [UBERON:0002481]

ncbi_organism_name: Rickettsia felis

ncbi_submitter: Pontificia Universidad Catolica de Chile


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Senegalimassilia anaerobia

ncbi_submitter: EMG


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium RIFOXYC1_FULL_44_8


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: France

ncbi_isolation_source: dairy product

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_organism_name: Anaerocolumna sp.


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Florida


ncbi_country: Canada: Alberta

ncbi_isolation_source: feces

ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Alberta


ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus SMMC6085


ncbi_country: China

ncbi_organism_name: Campylobacter jejuni HB-CJGB-ZB

ncbi_strain_identifiers: HB-CJGB-ZB

ncbi_submitter: State Key Laboratory for Infectious Disease Prevention and Control, and National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China


ncbi_country: Greece: Epirus

ncbi_isolation_source: cheese whey

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_country: Australia: Jervis Bay

ncbi_organism_name: Pseudoalteromonas sp. Scap03

ncbi_submitter: The Commonwealth Scientific and Industrial Research organisation


ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii AB_2009-04-01-7

ncbi_submitter: Translational Genomics Research Institute


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptomyces globisporus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: South Africa: Durban Chest Clinic

ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0062

ncbi_submitter: Broad Institute


ncbi_country: China: Beijing

ncbi_isolation_source: bronchoalveolar lavage fluid

ncbi_organism_name: Cupriavidus gilardii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: stools

ncbi_organism_name: Campylobacter coli

ncbi_submitter: CHU de Bordeaux


ncbi_country: USA: Georgia

ncbi_isolation_source: Chicken processing plant

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Texas Tech University


ncbi_country: USA

ncbi_isolation_source: Insect

ncbi_organism_name: Rickettsia endosymbiont of Sceptobius lativentris

ncbi_submitter: University of Liverpool


ncbi_isolation_source: citrus fruit food product

ncbi_organism_name: Enterococcus mundtii

ncbi_submitter: Medical Affairs, Glaxosmithkline


ncbi_country: Spain

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO, Faculty of Pharmacy, University of Porto


ncbi_country: Nigeria

ncbi_organism_name: Escherichia coli

ncbi_submitter: Igbinedion University Okada Edo state Nigeria


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: uncultured Staphylococcus sp.


ncbi_submitter: Cornell University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Alaska Anchorage


ncbi_isolation_source: Herd 118

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 1508

ncbi_submitter: University of Calgary


ncbi_country: Costa Rica: Guanacaste Conservation Area

ncbi_isolation_source: adult body

ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Germany

ncbi_isolation_source: raw milk

ncbi_organism_name: Pseudomonas veronii

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Thermus thermophilus

ncbi_submitter: Skolkovo Institute of Science and Technology


ncbi_assembly_name: Rumen uncultured genome RUG12927

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: Delftia tsuruhatensis

ncbi_strain_identifiers: GSK TC1

ncbi_submitter: GlaxoSmithkline R&D


ncbi_country: USA: Hickory Corners; MI

ncbi_isolation_source: soil

ncbi_organism_name: Yersinia sp. KBS0713

ncbi_submitter: Indiana University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__unclassified Yersinia (in: enterobacteria);s__Yersinia sp. KBS0713


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Wound Right Skin OPERATIVE

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Laboratory

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Thauera linaloolentis 47Lol = DSM 12138

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Rhodocyclales;f__Zoogloeaceae;g__Thauera;s__Thauera linaloolentis;x__Thauera linaloolentis 47Lol = DSM 12138


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Chicago

ncbi_isolation_source: Broncheoalveolar lavage

ncbi_organism_name: Pseudomonas nitroreducens

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chinese People's Liberation Army General Hospital


ncbi_country: Portugal

ncbi_isolation_source: urinary tract infection

ncbi_submitter: AstraZeneca


ncbi_country: Poland: Opole

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas monteilii

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Gemmata sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_submitter: University of Parma


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: SC


ncbi_isolation_source: ballast tank

ncbi_organism_name: Maricaulis sp.

ncbi_submitter: Shandong university


ncbi_country: Sweden

ncbi_organism_name: Escherichia coli O25b:H4

ncbi_submitter: Public Health Agency of Sweden


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: Netherlands: Holten

ncbi_isolation_source: forest

ncbi_organism_name: Neoehrlichia mikurensis

ncbi_submitter: National Institute of Public Health and Environment (RIVM)


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Sorangium sp. So ce1153

ncbi_strain_identifiers: So ce1153

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce1153


ncbi_isolate: AOP42_E1_surf _bin _7

ncbi_organism_name: Alcaligenes sp.

ncbi_strain_identifiers: AOP42_E1_surf _bin _7

ncbi_submitter: Genoscope


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Aliihoeflea sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_organism_name: Paraprevotella clara


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Stenotrophomonas indicatrix

ncbi_submitter: Monash University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Bangladesh Council of Scientific and Industrial Research (BCSIR)


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Prevotella melaninogenica

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: SAR202 cluster bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: hydrocarbon

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Streptomyces parvus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Sphingomonadales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan: Okinawa; Nanjo

ncbi_isolate: SMMOGMIN

ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_strain_identifiers: SMMOGMIN

ncbi_submitter: John McCutcheon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: groundwater

ncbi_organism_name: Lentisphaeria bacterium


ncbi_organism_name: Streptomyces uncialis


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Candidatus Krumholzibacteriia bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;x__unclassified Candidatus Krumholzibacteriia;s__Candidatus Krumholzibacteriia bacterium


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_country: China:Hubei; Xianning

ncbi_isolation_source: trachea

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: San Diego Bay; CA

ncbi_isolation_source: swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z

ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Centro de Astrobiologia

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Erythrobacteraceae bacterium UBA3609


ncbi_country: Mexico

ncbi_isolation_source: raw shrimp

ncbi_organism_name: Vibrio antiquarius

ncbi_submitter: Health Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio antiquarius


ncbi_organism_name: Escherichia coli

ncbi_submitter: Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: South Africa: Johannesburg

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: NHLS Research Trust


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_country: Chile

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Aliarcobacter trophiarum

ncbi_strain_identifiers: CECT 7650

ncbi_submitter: Universitat Rovira i Virgili


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Desulfohalobiaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Verrucomicrobiota bacterium


ncbi_country: France

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Shanghai Entry-Exit Inspection and Quarantine Bureau


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Fusobacterium sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Brevundimonas sp.


ncbi_country: Brazil

ncbi_isolation_source: Sausage with Tomato Sauce

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Xiamen University


ncbi_country: South Korea: Hadong-gun

ncbi_organism_name: Burkholderia glumae

ncbi_submitter: Seoul National University


ncbi_organism_name: Sandaracinaceae bacterium

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_assembly_name: Salmonella enterica CVM N38848-SQ v1.0

ncbi_country: USA: CA

ncbi_isolation_source: Chicken Breast

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Infantis

ncbi_submitter: FDA


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Methylicorpusculum sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Oribacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Zhejiang Province; Ximen Island

ncbi_isolation_source: seawater at sediment depth

ncbi_organism_name: Pseudoalteromonas sp. T1lg10

ncbi_submitter: Zhejiang University of Technology


ncbi_country: Australia: Cleveland

ncbi_isolation_source: freshwater

ncbi_organism_name: Geitlerinema sp. CS-897

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_country: Russia: Dagestan

ncbi_isolation_source: fermented milk

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: USA

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: SWINE VISCERA

ncbi_submitter: istituto zooprofilattico sperimentale della lombardia e dell'emilia romagna


ncbi_country: South Korea: Seoul

ncbi_isolation_source: hospital

ncbi_organism_name: Enterobacter sp. SECR18-0236

ncbi_submitter: Seoul Metropolitan Government Research Institute of Public Health and Environment


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Kordiimonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Mesorhizobium sp. LNJC394B00

ncbi_submitter: University of Southern California


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of Chicago


ncbi_organism_name: Enterobacter hormaechei


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: China: Zhengzhou

ncbi_isolation_source: Ascitic fluid

ncbi_submitter: The Third Affiliated Hospital of Zhengzhou University


ncbi_country: Germany

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Robert Koch Institute


ncbi_country: Iraq: Bagdad

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Research Institute for Plague Control


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces resistomycificus

ncbi_strain_identifiers: NRRL 2290

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: USA: Massachusetts

ncbi_isolation_source: Clinical

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Food and Drug Administration


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: Canada: Guelph

ncbi_isolation_source: Lung tissue

ncbi_organism_name: Mycoplasmopsis felis

ncbi_submitter: University of Guelph


ncbi_organism_name: Proteus faecis

ncbi_submitter: Nanjing University


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Alberta


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Munster Technological University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_isolate: Psychrobacter aquimaris SW-210

ncbi_isolation_source: sea water

ncbi_organism_name: Psychrobacter aquimaris

ncbi_strain_identifiers: Psychrobacter aquimaris SW-210

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: catheter

ncbi_organism_name: Streptococcus sp. UMB0029

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Corynebacterium tuberculostearicum

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Escherichia coli BIDMC 6

ncbi_strain_identifiers: BIDMC 6

ncbi_submitter: Broad Institute


ncbi_organism_name: Pantoea vagans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Hangzhou

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Affiliated Wenling Hospital


ncbi_country: Brazil: Belem

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: Chile

ncbi_isolation_source: meat

ncbi_submitter: Universidad de Chile


ncbi_organism_name: Borreliella garinii

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_country: China: Shanghai

ncbi_isolation_source: other

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Monash Unversity


ncbi_organism_name: bacterium

ncbi_submitter: University of Southern California


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_country: Brazil

ncbi_isolation_source: rhizosphere soil from sugare cane field

ncbi_organism_name: Pseudomonas sp. R44(2017)

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: WTSI


ncbi_country: USA: California; Alameda County

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: class I chancroid

ncbi_organism_name: [Haemophilus] ducreyi

ncbi_submitter: Indiana University School of Medicine


ncbi_country: Nigeria

ncbi_organism_name: Xanthomonas campestris pv. pennamericanum

ncbi_strain_identifiers: NCPPB 4349

ncbi_submitter: University of Exeter


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Chicago

ncbi_organism_name: Tissierella carlieri

ncbi_submitter: University of Chicago


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Ghent University


ncbi_country: USA: KY

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Agrobacterium pusense

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_country: China: Changsha

ncbi_isolation_source: liver abscess

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Beijing genomics institute


ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia diffusa

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Solirhodobacter olei

ncbi_submitter: Zhoukou Normal University


ncbi_country: Korea: Gwangju

ncbi_isolation_source: Subgingival dental plaque

ncbi_organism_name: Prevotella intermedia

ncbi_strain_identifiers: KCOM 1933

ncbi_submitter: Korean Collection for Oral Microbiology


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: Enterococcus avium

ncbi_submitter: The University of Queensland


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Edwardsiella tarda

ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_country: USA: California

ncbi_isolation_source: California sea lion

ncbi_organism_name: Campylobacter insulaenigrae

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Clostridioides difficile T61

ncbi_submitter: LPBA


ncbi_country: Egypt

ncbi_isolation_source: Domiati cheese

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: CIRM-BIA 2110

ncbi_submitter: Brigham Young University


ncbi_country: Netherlands

ncbi_isolation_source: Wall biofilm

ncbi_organism_name: Sideroxydans sp.

ncbi_submitter: Radboud University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_country: USA: Durham; NC

ncbi_isolation_source: urine; clean catch

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Alabama in Huntsville


ncbi_isolation_source: marine

ncbi_organism_name: Rheinheimera sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Kiritimatiellota bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Kiritimatiellota;x__environmental samples;s__uncultured Kiritimatiellota bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Colombia: Manaure Solar Salter; La Guajira

ncbi_isolation_source: solar saltern sediment

ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: Universidad de La Sabana

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_strain_identifiers: HRSE 4

ncbi_submitter: Chung-Ang University


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Winogradskyella sp.

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Candidatus Scatavimonas sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Scatavimonas;x__unclassified Candidatus Scatavimonas;s__Candidatus Scatavimonas sp.


ncbi_country: Portugal

ncbi_organism_name: Xanthomonas fragariae

ncbi_strain_identifiers: WHRI 6150

ncbi_submitter: University of Exeter


ncbi_country: Egypt: Ismaelia

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Fimousia stercorigallinarum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Fimousia;s__Candidatus Fimousia stercorigallinarum


ncbi_country: USA: Boston; MA

ncbi_isolation_source: ICU

ncbi_organism_name: Staphylococcus aureus M0210

ncbi_submitter: Broad Institute


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Roskilde University


ncbi_organism_name: Providencia sp. PROV279

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: lake water

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Verrucomicrobiota bacterium


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: SAHMRI


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: AIIMS, New Delhi


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA


ncbi_organism_name: Segatella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Candidatus Brocadia sp.

ncbi_submitter: University of Gothenburg

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;x__unclassified Candidatus Brocadia;s__Candidatus Brocadia sp.


ncbi_country: Germany

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp. ZBS13

ncbi_submitter: KULeuven


ncbi_country: USA: Texas

ncbi_isolation_source: Endocarditis

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: The University of Texas at Dallas


ncbi_organism_name: Morganella morganii subsp. morganii


ncbi_country: China: Zhejiang

ncbi_isolation_source: caecum

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Eubacterium sp. An3

ncbi_submitter: Veterinary Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. An3


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: INRAE


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: BMSSI, CNRS UMR5086, Universite Lyon


ncbi_organism_name: Escherichia coli ATCC BAA-2193

ncbi_strain_identifiers: ATCC BAA-2193

ncbi_submitter: American Type Culture Collection


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Actinobacillus lignieresii


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Manilae;x__Leptospira interrogans serovar Manilae str. M933_lip32_mutant


ncbi_organism_name: Halomonas sp. AOP43-D1-4

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: Food

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Universidad Mayor


ncbi_isolation_source: lung

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Ares Genetics


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: United Kingdom

ncbi_isolation_source: Chemostat

ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: King's College London


ncbi_organism_name: Nonomuraea fuscirosea

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Levyibacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levyibacteriota bacterium


ncbi_country: Malaysia

ncbi_strain_identifiers: USAMRU Malaysia #17

ncbi_submitter: US Army Edgewood Chemical Biological Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;x__pseudomallei group;s__Burkholderia pseudomallei;x__Burkholderia pseudomallei USAMRU Malaysia #17


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacial surface ice

ncbi_organism_name: Bacteriovorax sp.

ncbi_submitter: Aarhus University


ncbi_organism_name: Clostridium perfringens ATCC 13124

ncbi_submitter: TIGR


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas sp. PA-1-5A

ncbi_submitter: NIAB East Malling Research


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Final Effluent

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: University of KwaZulu Natal


ncbi_country: China: Shanghai

ncbi_isolation_source: clinic

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Shanghai Municipal ceter for disease control & prevention


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Pittsburgh


ncbi_country: India: Unique Biotech Limited; Hyderabad

ncbi_isolation_source: soil sample

ncbi_organism_name: Shouchella clausii

ncbi_submitter: Unique Biotech Limited


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ethiopia: Oromia; West Shewa

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Australia: Ulupna; NSW

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Malan

ncbi_organism_name: Rufibacter sp. LB8

ncbi_submitter: BGI-Qingdao


ncbi_country: Lithuania

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: China: Zhanjiang;Guangdong

ncbi_organism_name: Microbacterium sp. str. 'China'

ncbi_strain_identifiers: China

ncbi_submitter: JINAN University


ncbi_country: Brazil:Santa Catarina; Itajai

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weslaco


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Subdoligranulum variabile

ncbi_submitter: EMG


ncbi_organism_name: Gemella haemolysans


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Penaeicola halotolerans

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Su Dong


ncbi_organism_name: Serratia sp. 22278

ncbi_submitter: Yantai University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. 22278


ncbi_organism_name: uncultured Pleurocapsa sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Prevotellamassilia timonensis


ncbi_organism_name: Xanthomonas sp. 0924

ncbi_submitter: Guangxi Univeristy


ncbi_organism_name: Chryseobacterium bernardetii

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_organism_name: Rickettsiella endosymbiont of Litargus connexus

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho university


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Aeromonas sp. A04

ncbi_submitter: Shanghai Fisheries Research Institute


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Vienna


ncbi_isolate: SPRUCE 465

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_strain_identifiers: SPRUCE 465

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: General Hospital of Ningxia Medical University


ncbi_organism_name: Streptomyces sp. NPDC091266

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Rubritepida sp.


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: China: Wuhu Polymetallic Mine; Anhui Province

ncbi_organism_name: Actinomycetes bacterium


ncbi_isolation_source: Suspended Particulate Matter (SPM) from the Black Sea western gyre

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Utrecht University


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D5_bin-0866

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Alistipes shahii


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_submitter: Innovative Genomics Institute


ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Salmonella enterica


ncbi_organism_name: Streptomyces sp. NPDC014940


ncbi_organism_name: uncultured Cellvibrio sp.


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_country: Germany: Animal Facility; Justus-Liebig-University; Giessen

ncbi_isolation_source: Surface of a polyethylene microplastic particle present in tank 6 of a marine aquarium containing stony-coral fragments and water maintained at 26 degree C

ncbi_organism_name: Roseivivax sp. THAF197b

ncbi_submitter: Uni Bielefeld


ncbi_organism_name: bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universtity Hospital Cologne


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Mediterraneibacter merdavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Faecalibacterium wellingii

ncbi_strain_identifiers: HTF-A

ncbi_submitter: University of Groningen


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Succinatimonas sp.


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pittsburgh; PA

ncbi_isolation_source: Lab mutant

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Pittsburgh Bacteriophage Institute


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: marine

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: EMG


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Ghent University


ncbi_organism_name: Candidatus Faeciplasma gallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Faeciplasma;s__Candidatus Faeciplasma gallinarum


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Desulfomicrobium macestii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: New York State

ncbi_isolation_source: Black Creek Park

ncbi_organism_name: Enterobacteriaceae bacterium RIT711

ncbi_submitter: Rochester Institute of Technology


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: colon

ncbi_organism_name: Campylobacter mucosalis

ncbi_submitter: USDA, ARS, WRRC


ncbi_assembly_name: Rumen uncultured genome hRUG860

ncbi_organism_name: uncultured Veillonellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: NH; DHMC

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Dartmouth College


ncbi_country: Sweden

ncbi_isolation_source: prostatic tissue

ncbi_organism_name: Cutibacterium acnes subsp. defendens

ncbi_submitter: Aarhus University


ncbi_country: Germany

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 08-01062

ncbi_submitter: Broad Institute


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Shandong

ncbi_isolation_source: vaginal secretion

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: Shandong University


ncbi_country: China: Malan

ncbi_organism_name: Bacillus pacificus

ncbi_submitter: BGI-Qingdao


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Collinsella sp. AF02-46-1

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG12649

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Viet Nam

ncbi_isolation_source: Slaughterhouse

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Antwerpen


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: France: Brest

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Haemophilus parainfluenzae


ncbi_isolation_source: lake water

ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Zhejiang University


ncbi_country: USA: Utah

ncbi_isolation_source: wound

ncbi_submitter: Dugway Proving Ground

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis;sb__Francisella tularensis subsp. tularensis;x__Francisella tularensis subsp. tularensis 80700075


ncbi_organism_name: Parabacteroides bouchesdurhonensis

ncbi_submitter: URMITE


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Stenotrophomonas pavanii


ncbi_isolation_source: human skin metagenome

ncbi_organism_name: Corynebacterium kroppenstedtii

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: feces

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: small intestine

ncbi_submitter: Yangzhou University


ncbi_isolation_source: burned soil

ncbi_organism_name: Schlesneria sp.

ncbi_submitter: Colorado State University


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: blood

ncbi_submitter: Copenhagen University Hospital Hvidovre


ncbi_country: Viet Nam:Hanoi

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Department of International Health, Institute of Tropical Medicine, Nagasaki University


ncbi_country: Thailand: Hat Yai City; Songkhla province

ncbi_isolation_source: environmental

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: National University of Singapore and Genome Institute of Singapore


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: addis ababa university


ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Companilactobacillus;s__Companilactobacillus nodensis;x__Companilactobacillus nodensis DSM 19682 = JCM 14932 = NBRC 107160


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Australia

ncbi_organism_name: Burkholderia pseudomallei MSHR487

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Lachnospira sp. UBA3647

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Neomegalonema sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella sp. 97683

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: India: Vellore

ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Helicobacter pylori SA174A

ncbi_submitter: MHH


ncbi_country: Venezuela

ncbi_isolation_source: Environmental isolate

ncbi_organism_name: Pseudomonas aeruginosa PS50

ncbi_submitter: Broad Institute


ncbi_isolation_source: cloacal swab

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_organism_name: Xenorhabdus doucetiae

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Herbaspirillum seropedicae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Anhui; Suzhou

ncbi_isolation_source: Corn field soil

ncbi_organism_name: Rhodococcus qingshengii

ncbi_strain_identifiers: HQ

ncbi_submitter: Jiangsu Academy of Agricultural Sciences


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Shapirobacteria bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;x__unclassified Candidatus Shapirobacteria;s__Candidatus Shapirobacteria bacterium


ncbi_organism_name: uncultured Halomonas sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Hyphomonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus


ncbi_country: Estonia

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_country: South Korea: Seoul

ncbi_isolation_source: nasophraynx

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chungbuk National University Hospital


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Zurich


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_isolation_source: gastric juice

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Enterobacter sp. CFBP8995

ncbi_submitter: INRAE


ncbi_country: China: Heihe; Heilongjiang

ncbi_isolation_source: soil

ncbi_organism_name: Bradyrhizobium ottawaense

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Texas

ncbi_isolation_source: blood

ncbi_organism_name: Weissella confusa

ncbi_submitter: Texas A&M University


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Atopobium sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: Comamonas granuli


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Aliarcobacter lanthieri

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli

ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_country: USA: WA

ncbi_submitter: FDA/CFSAN


ncbi_country: Germany

ncbi_isolation_source: military dog fecal sample

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Hungatella sp.


ncbi_organism_name: Mycobacterium sp. D16R12

ncbi_submitter: LNCC


ncbi_isolation_source: Respiratory swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis


ncbi_country: South Korea: Jeonju

ncbi_isolation_source: gut of larva

ncbi_organism_name: Lactococcus allomyrinae

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_country: India

ncbi_isolation_source: marine sediment

ncbi_organism_name: Priestia filamentosa

ncbi_submitter: CSIR- National Chemical Laboratory


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: France: Hopital Pellegrin-Bordeaux

ncbi_organism_name: Enterococcus faecium EnGen0264

ncbi_submitter: Broad Institute


ncbi_organism_name: Streptosporangium amethystogenes subsp. fukuiense

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: United Kingdom: England

ncbi_organism_name: Pseudomonas tolaasii

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_assembly_name: Rumen uncultured genome RUG10951

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Succiniclasticum sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Fervidobacterium sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SRCAMB


ncbi_country: USA: Honolulu; HI

ncbi_isolation_source: accessory nidamental gland

ncbi_organism_name: Leisingera sp. ANG-S3

ncbi_submitter: University of Connecticut


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: AK

ncbi_organism_name: Escherichia albertii

ncbi_submitter: FDA/CFSAN


ncbi_country: Portugal: National Park of Peneda-Geres; Rio Cabril

ncbi_isolation_source: forest soil

ncbi_organism_name: Burkholderia diffusa

ncbi_submitter: Universidade do Minho


ncbi_country: China: Yangzhou

ncbi_isolation_source: stray dog feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Bdellovibrio sp.

ncbi_submitter: EPFL


ncbi_country: China

ncbi_isolation_source: marine benthic turfs

ncbi_organism_name: Kamptonema sp. SIO1D9

ncbi_submitter: UCSD


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: UIUC


ncbi_country: Mexico

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of California at Davis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_submitter: Maynooth University


ncbi_country: Germany: Europe

ncbi_isolation_source: soil

ncbi_organism_name: Lysobacter sp. K5869

ncbi_submitter: University of Bonn


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1236

ncbi_submitter: Broad Institute


ncbi_country: Norway

ncbi_isolation_source: Blood culture

ncbi_submitter: St. Olav University Hospital


ncbi_submitter: Institute of Veterinary Medicine, Warsaw University of Life Sciences,

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. diarizonae;x__Salmonella enterica subsp. diarizonae serovar 58:r:z53


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: McGill University


ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_country: China: Hunan

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Micromonospora sp. HUAS LYJ1

ncbi_strain_identifiers: HUAS LYJ1

ncbi_submitter: Hunan University of Arts and Science


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_country: Malaysia

ncbi_isolation_source: nosopharyngeal aspirate

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Universiti Sultan Zainal Abidin