ncbi_country: Russia: Yessentuki mineral water deposit

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Saccharicenans sp.

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;x__unclassified Candidatus Saccharicenans;s__Candidatus Saccharicenans sp.


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Neisseria dentiae

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Australia: Queensland

ncbi_isolation_source: laboratory culture after 20 days induced resistance against Polymyxin B

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Queensland


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Pfizer


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Zhejiang; Hangzhou

ncbi_isolation_source: feces

ncbi_submitter: Zhejiang University


ncbi_organism_name: Filifactoraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Aerococcus urinaeequi

ncbi_submitter: EMG


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


gtdb_representative: t

ncbi_assembly_name: freshwater MAG --- LaPlata_bin-1722

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Israel: Achziv Nature Marine Reserve

ncbi_isolation_source: coastal seawater

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Haifa


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Salmonella sp. NW1191

ncbi_submitter: Sichuan University


ncbi_organism_name: Salmonella sp. NW488


ncbi_organism_name: uncultured Desulfobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC048434

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Salmonella sp. C3294


ncbi_organism_name: uncultured Veillonellaceae bacterium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Pseudomonas sp. 22490

ncbi_submitter: Yantai University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Salmonella sp. NW545


ncbi_submitter: University of Southern California


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudomonas sp. O230

ncbi_submitter: Universidade Federal do Rio de Janeiro (UFRJ)


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen University


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: human gut


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: termite gut

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Eubacteriales bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Acinetobacter junii

ncbi_submitter: Tsinghua University


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Chlamydia crocodili

ncbi_submitter: Mahidol University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: delta Y

ncbi_submitter: Fudan University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- Loc090721-8-6m_bin-0569

ncbi_organism_name: uncultured Fibrobacterota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;x__environmental samples;s__uncultured Fibrobacterota bacterium


ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Lund University


ncbi_country: USA: FL; Summerland Key

ncbi_isolation_source: coral surface mucus layer and tissue

ncbi_organism_name: Pseudoalteromonas sp. XMcav2-N

ncbi_submitter: Meyer Microbes Lab


ncbi_country: Switzerland

ncbi_isolation_source: Nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Australia: NSW

ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology


ncbi_country: South Korea: Ilsan

ncbi_isolation_source: Korean adult feces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Korea Food Research Institute


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: concordia university


ncbi_assembly_name: Rumen uncultured genome RUG12913

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp1 AA137

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp1 AA137

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Jilin University


ncbi_organism_name: Fervidobacterium sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_country: Algeria: Gara Djebilet West

ncbi_isolation_source: crushed rocks in Gara Djebilet Iron Mine

ncbi_organism_name: Streptomyces sp. ZSW22

ncbi_submitter: University of New Hampshire


ncbi_country: Canada: Ottawa; Ontario

ncbi_organism_name: Ensifer canadensis

ncbi_refseq_category: reference genome

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_type_material_designation: assembly from type material


ncbi_isolate: VTEC

ncbi_submitter: ISTITUTO SUPERIORE DI SANITA


ncbi_organism_name: Campylobacter hepaticus

ncbi_strain_identifiers: HV10pglB::kan M7

ncbi_submitter: Royal Melbourne Institute of Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Alicante Institute for Health and Biomedical Research (ISABIAL)


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Spirochaetales bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola massiliensis


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: uncultured Terriglobales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_organism_name: Candidatus Hydrogenedentales bacterium

ncbi_submitter: Institute of Water Research

ncbi_taxonomy: d__Bacteria;p__Candidatus Hydrogenedentota;c__Candidatus Hydrogenedentia;o__Candidatus Hydrogenedentales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;c__Candidatus Hydrogenedentia;o__Candidatus Hydrogenedentales;x__unclassified Candidatus Hydrogenedentales;s__Candidatus Hydrogenedentales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Prevotellaceae bacterium UBA6398

ncbi_submitter: University of Queensland


ncbi_country: China: Guangdong

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Guangzhou

ncbi_isolation_source: fermented soya beans

ncbi_organism_name: Bacillus amyloliquefaciens DC-12

ncbi_submitter: School of Bioscience and Bioengineering, South China University of Technology, Guangzhou

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens;x__Bacillus amyloliquefaciens DC-12


ncbi_isolation_source: human gut

ncbi_organism_name: Enterococcus durans

ncbi_submitter: EMG


ncbi_country: Guadeloupe: French West Indies; Caribbean

ncbi_isolation_source: gill tissue of adult individuals collected in Thalassia testudinum seagrass beds on ilet cochon

ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_strain_identifiers: COS

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef sponge

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: James Cook University


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacier surface soil

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Aarhus University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


gtdb_type_species_of_genus: t

ncbi_organism_name: Salinibacter ruber DSM 13855

ncbi_submitter: TIGR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Rhodothermota;c__Rhodothermia;o__Rhodothermales;f__Salinibacteraceae;g__Salinibacter;s__Salinibacter ruber;x__Salinibacter ruber DSM 13855


ncbi_submitter: Center for Microbial Communities


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: New York

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Newcastle University


ncbi_country: Germany

ncbi_isolation_source: raw milk

ncbi_organism_name: Pseudomonas sp. WS 5407

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_country: Uruguay

ncbi_isolation_source: beef trimmings

ncbi_organism_name: Escherichia coli O18ac:H14

ncbi_submitter: US Meat Animal Research Center-ARS


ncbi_country: Mexico: Tepoztlan; Morelos

ncbi_isolation_source: legume-root nodule

ncbi_organism_name: Rhizobium phaseoli

ncbi_submitter: Centro de Ciencias Genomicas UNAM


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Sri Lanka

ncbi_isolation_source: neonatal anal swab

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: EMG


ncbi_organism_name: Corynebacterium sp. KPL2830

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: uncultured Capnocytophaga sp.


ncbi_country: Canada: Quebec

ncbi_isolation_source: Slaughterhouse-environment

ncbi_submitter: Tamazight Cherifi's shared submissions


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_organism_name: Acidisphaera sp.


ncbi_country: Poland

ncbi_organism_name: Providencia alcalifaciens

ncbi_submitter: NanKai universit


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Dehalococcoides mccartyi IBARAKI

ncbi_strain_identifiers: IBARAKI

ncbi_submitter: Tokyo University of Agriculture and Technology


ncbi_country: Germany: Upper Bavaria

ncbi_isolation_source: cattle

ncbi_organism_name: Lysinibacillus sp. BF-4

ncbi_submitter: Bundeswehr Insitute of Microbiology


ncbi_isolation_source: coastal sediment

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Candidatus Peribacter sp. UBA6535

ncbi_submitter: University of Queensland

ncbi_taxonomy: d__Bacteria;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;f__;g__Candidatus Peribacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;x__Candidatus Peribacteraceae;g__Candidatus Peribacter;x__unclassified Candidatus Peribacter;s__Candidatus Peribacter sp. UBA6535


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Japan: Miyagi

ncbi_organism_name: Pseudomonas petroselini

ncbi_submitter: National Agriculture and Food Research Organization (NARO)


ncbi_country: USA: Alachua

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: AAFC


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFCSPLOWO2_01_FULL_41_52


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-442-D10

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Thermodesulfovibrio thiophilus

ncbi_submitter: CLUE-TERRA


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Paraclostridium bifermentans

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: South Korea: Wanju

ncbi_isolation_source: Lettuce

ncbi_organism_name: Acinetobacter sp. V89_4

ncbi_submitter: Max Rubner-Institut


ncbi_assembly_name: Rumen uncultured genome RUG11958

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: China University of Geosciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillales bacterium


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;x__unclassified Candidatus Zhuqueibacterota;s__Candidatus Zhuqueibacterota bacterium 4484_87


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_level: Chromosome

ncbi_country: Colombia

ncbi_isolation_source: Environment

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Antioquia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA: Memphis; Nebraska

ncbi_organism_name: Curtobacterium sp. 1310

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Microcoleus sp. Pol1C5

ncbi_submitter: Palacky University Olomouc


ncbi_country: Canada

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Boston; MA

ncbi_isolation_source: bone

ncbi_organism_name: Staphylococcus aureus M1572

ncbi_submitter: Broad Institute


ncbi_country: Sri Lanka

ncbi_isolation_source: Tripsacum laxum

ncbi_organism_name: Xanthomonas vasicola

ncbi_strain_identifiers: NCPPB 1394

ncbi_submitter: University of Exeter


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Marinobacter alkaliphilus

ncbi_submitter: Ocean university of china


ncbi_country: Chile: Region de Los Lagos

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Chryseomicrobium imtechense

ncbi_submitter: Universidade Federal do Rio Grande do Sul


ncbi_country: Pacific Ocean

ncbi_organism_name: Synechococcus sp. AG-673-B04

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Lower Respiratory Tract Secrection

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Escherichia coli

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China: Yushu Tibetan Autonomous Prefecture

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: National institute for communicable disease control and prevention China CDC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: Czech Republic

ncbi_isolation_source: bark beetle

ncbi_organism_name: Pseudomonas bohemica

ncbi_submitter: Institute of Microbiology of the ASCR


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: USA: MD

ncbi_organism_name: Shigella dysenteriae

ncbi_strain_identifiers: DMB SH20196

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Streptomyces chartreusis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: Australia: Australian Institute of Marine Science

ncbi_isolation_source: seawater

ncbi_organism_name: Boseongicola sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Escherichia coli STEC_MHI813

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: uncultured Olsenella sp.


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW300-N1A5

ncbi_submitter: Arkin Lab


ncbi_country: Switzerland

ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Brown University


ncbi_country: Malaysia

ncbi_isolation_source: Peritoneal fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_country: China: Shandong

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Cameroon

ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: Emerging Pathogens Institute, University of Florida,


ncbi_country: China: Kunming

ncbi_isolation_source: soil

ncbi_organism_name: Sphingobacterium tabacisoli

ncbi_submitter: State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1465

ncbi_submitter: Broad Institute


ncbi_country: China: Anhui


ncbi_submitter: Nimes University Hospital


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: China: Guangzhou

ncbi_organism_name: Corynebacterium pseudokroppenstedtii

ncbi_submitter: The Second Clinical College, Guangzhou University of Chinese Medicine


ncbi_country: China: Alshan Tianchi

ncbi_isolation_source: water

ncbi_organism_name: Paucibacter sp. TC2R-5

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Sphingomonas sp.


ncbi_organism_name: Fructobacillus fructosus

ncbi_submitter: ghent university


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Colorado State University


ncbi_country: South Korea

ncbi_organism_name: Pantoea vagans

ncbi_submitter: Yeungnam University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Megasphaera massiliensis

ncbi_submitter: University of Chicago


ncbi_country: USA: Falmouth; Massachusetts

ncbi_strain_identifiers: BPEN

ncbi_submitter: Josephine Bay Paul Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__ant endosymbionts;g__Candidatus Blochmanniella;s__Candidatus Blochmanniella pennsylvanica;x__Candidatus Blochmanniella pennsylvanica str. BPEN


ncbi_organism_name: Nocardia rhamnosiphila

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: [Kitasatospora] papulosa


ncbi_organism_name: Stutzerimonas balearica


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Toho University


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_country: Brazil: Campinas

ncbi_organism_name: Pseudomonas sp. EMN2

ncbi_submitter: UNICAMP


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Waddliaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured cyanobacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Guizhou; Fuquan

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: shaoxing people's hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_country: China

ncbi_isolation_source: small intestine

ncbi_submitter: Yangzhou University


ncbi_country: USA: GA

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Italy

ncbi_isolation_source: minced meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: Peru: Lima

ncbi_isolation_source: free-living amoeba in hospital environment biofilm

ncbi_organism_name: Mycobacterium gordonae

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: Germany

ncbi_isolation_source: Mastitis

ncbi_submitter: Federal Institute for Risk Assessment


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Campylobacter showae


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Staples; Minnesota

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_isolation_source: cold seep

ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Tepidifontimicrobium;s__Candidatus Tepidifontimicrobium thermophilum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Tepidifontimicrobium;s__Candidatus Tepidifontimicrobium thermophilum


ncbi_organism_name: Chloroflexia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Darwinibacter acetoxidans

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_organism_name: Candidatus Merdimorpha sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Merdimorpha;x__unclassified Candidatus Merdimorpha;s__Candidatus Merdimorpha sp.


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Micromonospora chersina

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID 4553

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Klebsiella sp. R24

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_organism_name: uncultured Methylovirgula sp.


ncbi_organism_name: Agriterribacter sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: NA 34

ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: School of biotechnology, International University, Vietnam National University, Hochiminh city


ncbi_organism_name: Acidaminococcus intestini


ncbi_organism_name: Aphanizomenon sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Candidatus Avilachnospira sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Avilachnospira;x__unclassified Candidatus Avilachnospira;s__Candidatus Avilachnospira sp.


ncbi_submitter: Puyang Oil Field General Hospital


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: University of Southampton


ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: Pig 105

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Salmonella sp. 5800

ncbi_submitter: Zhejiang university


ncbi_organism_name: Mesosutterella multiformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Oceanicaulis sp.


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: The Roslin Institute (University of Edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Calditrichia bacterium


ncbi_country: India: Trans-Himalayan region of Ladakh; Lotus Pond Hot Spring

ncbi_isolation_source: Hot spring water

ncbi_organism_name: Tepidimonas sp.

ncbi_submitter: Bose Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Tepidimonas;x__unclassified Tepidimonas;s__Tepidimonas sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Japan

ncbi_isolation_source: closed abscess

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Toho university


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_country: Argentina

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Salmonella sp. NW273

ncbi_submitter: Sichuan University


ncbi_country: China: Shenzhen

ncbi_organism_name: Ruminococcus sp. AM42-10AC

ncbi_submitter: BGI


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: HOE Legacy IIB net trap

ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: SCOPE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Sichuan

ncbi_isolation_source: Sichuan; China

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Washington University


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sciensano


ncbi_isolation_source: enriched from a lab-scale EBPR bioreactor

ncbi_organism_name: Candidatus Accumulibacter vicinus

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;s__Candidatus Accumulibacter vicinus


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: OHSU


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Chicken meat

ncbi_organism_name: Salmonella sp. SJTUF14146

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Switzerland

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Agroscope, Microbial Food Safety


ncbi_country: Canada: Guelph

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Tanzania: DAR ES SALAAM

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_organism_name: Pseudomonas sp. 39167

ncbi_submitter: UC San Diego


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley


ncbi_country: South Korea

ncbi_isolation_source: cecum

ncbi_organism_name: Lacticaseibacillus absianus

ncbi_submitter: KRIBB


ncbi_country: China

ncbi_isolation_source: Respiratory Medicine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Guangzhou Medical University


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Henan Agricultural University


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Germany: Koln

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 1 / A; 5m depth; 0.2 filter

ncbi_organism_name: Candidatus Aquivivens invisus

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy: d__Bacteria;p__Candidatus Omnitrophota;c__;o__;f__;g__Candidatus Aquivivens;s__Candidatus Aquivivens invisus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;g__Candidatus Aquivivens;s__Candidatus Aquivivens invisus


ncbi_isolation_source: microbes were collected at JL-Dive100-S03

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences


ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: EMG


ncbi_country: USA: NY

ncbi_isolation_source: sediment pond

ncbi_submitter: New York State Dept. of Health - Wadsworth Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Thompson


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Grumpensis


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: saline water including plankton

ncbi_submitter: Uppsala University


ncbi_country: Canada: Alberta

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: University of Calgary


ncbi_country: Italy

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Holdemanella porci

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Egypt: Alexandria

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of East Anglia


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_submitter: Shandong Academy of Agricultural Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: China: Henan

ncbi_organism_name: Escherichia coli

ncbi_submitter: China CDC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Shandong

ncbi_submitter: China agricultural university


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Lancefieldella rimae ATCC 49626

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_country: Kenya

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: USA: salt marsh pool; Neponset River estuary; Boston; MA

ncbi_organism_name: Magnetovibrio blakemorei

ncbi_submitter: Southwestern Oklahoma State University


ncbi_organism_name: uncultured Melioribacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Vibrio kanaloae

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: bacterium 1xD42-87

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: University of Chicago


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Universite Laval


ncbi_country: Denmark

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: University of Copenhagen


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_submitter: Center for Microbial Communities


ncbi_country: Australia

ncbi_isolation_source: mucosal tissue from Crohns disease patient

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptomyces sp. NPDC002812

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Micromonospora sp. NPDC050495


ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: Canada: Syncrude; Ft. McMurray; Alberta

ncbi_isolation_source: waste water

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium UBA5631


ncbi_country: Czech Republic

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R589;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paraprevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: EMG


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Viet Nam

ncbi_isolation_source: seawater from mussel farm

ncbi_organism_name: Echinicola vietnamensis DSM 17526

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Cyclobacteriaceae;g__Echinicola;s__Echinicola vietnamensis;x__Echinicola vietnamensis DSM 17526


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Estonia: Harjumaa

ncbi_isolation_source: caecal content

ncbi_organism_name: Enterococcus faecalis


ncbi_country: Belgium

ncbi_isolation_source: soil matrix of an anoxic water-saturated layer (1 m in depth) that had been exclusively polluted with 1;2-DCA.

ncbi_organism_name: Desulfitobacterium dichloroeliminans LMG P-21439


ncbi_country: Canada: Ontario

ncbi_isolation_source: manure from farm

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: uncultured Undibacterium sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_isolate: Av

ncbi_strain_identifiers: Av

ncbi_submitter: Ecology and Biology of Interactions - UMR 7267, CNRS - Universite Poitiers

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Candidatus Hepatoplasmataceae;g__Candidatus Hepatoplasma;s__Candidatus Hepatoplasma crinochetorum;x__Candidatus Hepatoplasma crinochetorum Av


ncbi_assembly_name: freshwater MAG --- Ja_bin-5847

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: BILS


ncbi_country: USA: San Francisco Bay

ncbi_isolation_source: intertidal sediment

ncbi_organism_name: Syntrophotalea acetylenivorans

ncbi_submitter: US Geological Survey


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_country: Argentina

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Italy: Trento

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Burkholderia sp. 4M9327F10

ncbi_submitter: University of Trento


ncbi_assembly_name: Rumen uncultured genome RUG14405

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: gut content

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Denmark: Hirtshals

ncbi_isolation_source: activated sludge from Hirt_18-Q3-R61-65

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_isolation_source: hospital

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_country: Norway

ncbi_isolation_source: larvae

ncbi_organism_name: Serratia sp. 3ACOL1

ncbi_submitter: Norwegian University of Life Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. 3ACOL1


ncbi_organism_name: uncultured Acetobacteroides sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Parvimonas sp.

ncbi_submitter: EMG


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: Dahi fermented milk product

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Quaid-I-Azam University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Chongqing Medical University


ncbi_country: USA: IN

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: paddy field soil

ncbi_organism_name: Geomonas paludis

ncbi_submitter: Bioproduction Research Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bradyrhizobium sp. HKCCYLRH1030

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Turkey: Sivas

ncbi_isolation_source: Fish Farm

ncbi_organism_name: Pseudomonas pisciculturae

ncbi_submitter: Erciyes University


ncbi_country: Switzerland

ncbi_isolation_source: wild boar feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: Chesapeake Bay

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Clemson University


ncbi_organism_name: Serratia sp. CY44782

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY44782


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Finland

ncbi_organism_name: Flavobacterium psychrophilum


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Oklahoma

ncbi_isolation_source: produced fluids from hydraulically fractured shales

ncbi_organism_name: Defluviitaleaceae bacterium

ncbi_submitter: The Ohio State University


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: Urology Surgery

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Guangzhou Medical University


ncbi_country: Denmark

ncbi_isolation_source: Feces

ncbi_organism_name: Bacteroidales bacterium GP1

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium GP1


ncbi_organism_name: Spirosoma fluviale


ncbi_country: USA: Kentucky

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_organism_name: Rickettsia typhi


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces cacaoi

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Estonia

ncbi_isolation_source: ear secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: United Kingdom

ncbi_organism_name: Brucella abortus 877/67

ncbi_submitter: Broad Institute


ncbi_isolation_source: nasopharynx


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Tanzania

ncbi_isolation_source: nasal swabs from HIV infected patient

ncbi_submitter: University of Bergen


ncbi_isolate: SPRUCE 607

ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 607

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Candidatus Neoarthromitus;x__environmental samples;s__uncultured Candidatus Neoarthromitus sp.


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: Philippines

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_country: Australia: Davies Reef

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Germany: Bremen; pond; freshwater sediment

ncbi_isolation_source: autotrophic NRFeOx enrichment culture BP inoculated with freshwater sediment

ncbi_organism_name: Candidatus Ferrigenium bremense

ncbi_submitter: University of Tuebingen


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Japan Agency for Marine-Earth Science and technology (JAMSTEC)


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Staphylococcus aureus VET0176R


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: China: Guangdong Province

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhongshan School of Medicine, Sun Yat-sen University


ncbi_country: China: Fujian

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus sp. A2(2023)

ncbi_submitter: Fujian Agriculture And Forestry University


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: North West University


ncbi_country: Germany

ncbi_isolation_source: chick-box-paper

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Freie Universitaet Berlin


ncbi_organism_name: Escherichia coli

ncbi_submitter: MRSN BI Team


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: China: Xiamen

ncbi_isolation_source: sediment

ncbi_organism_name: Sulfurovum xiamenensis

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Streptococcus penaeicida

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_submitter: Inha University


ncbi_isolation_source: Faeces

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Treponema sp. UBA1240

ncbi_submitter: University of Queensland


ncbi_isolation_source: sea water

ncbi_organism_name: Shewanella litoralis

ncbi_submitter: Shandong University


ncbi_organism_name: Phyllobacterium sp. UNC302MFCol5.2

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: gut content

ncbi_organism_name: Limosilactobacillus antri

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: China: Beijing

ncbi_isolation_source: lab-scale wastewater treatment bioreactor

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Peking University


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: University of Bern


ncbi_organism_name: Prevotella denticola

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Seoul National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of East Anglia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Environmental Microbiology OMICS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Streptomyces sp. NPDC060311

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Akkermansia sp.


ncbi_organism_name: OM182 bacterium

ncbi_submitter: Institut de Ciencies del Mar

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__OMG group;x__OM182 clade;s__OM182 bacterium


ncbi_organism_name: Deinococcus sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Brucella pseudogrignonensis

ncbi_submitter: College of Resources and Environmental science


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_submitter: Portland State University


ncbi_organism_name: Hydrogenophaga intermedia

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_country: China: Maanshan Magnetite Mine; Anhui Province


ncbi_organism_name: Neisseria animaloris

ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_isolate: AOP1_F1_surf _bin _14

ncbi_organism_name: Microbacterium gubbeenense

ncbi_strain_identifiers: AOP1_F1_surf _bin _14

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Lysobacter sp.


ncbi_isolation_source: mouse gut metagenome


ncbi_country: France: Paris

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Firmicutes bacterium UBA2058

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA2058


ncbi_isolation_source: stool

ncbi_submitter: Wroclaw University of Environmental and Life Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: patient with infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_isolation_source: Tracheal secretions

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: SurvCARE


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Succinatimonas sp. UBA761


ncbi_country: Ireland: Oysterhaven

ncbi_isolation_source: gill

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: Cefas


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Agriculture and Forestry University


ncbi_country: China

ncbi_isolation_source: yogurt

ncbi_organism_name: Companilactobacillus zhongbaensis

ncbi_submitter: Northeast Agricultural University


ncbi_country: Czech Republic

ncbi_submitter: 2nd Faculty of Medicine, Charles University and Motol University Hospital


ncbi_country: Canada: Ontario

ncbi_isolation_source: dairy cattle manure digester

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: JPIAMR ARMIS


ncbi_country: Brazil: Braganca

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Mesorhizobium sp. M1112

ncbi_submitter: Washington State University


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: freshwater

ncbi_submitter: South China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Synechococcales;f__Synechococcaceae;g__Synechococcus;s__Synechococcus elongatus;x__Synechococcus elongatus PCC 7942 = FACHB-805


ncbi_country: North Korea: Sea of Japan

ncbi_isolation_source: seawater

ncbi_organism_name: Alteromonas stellipolaris

ncbi_submitter: University Miguel Hernandez

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Thiotrichales bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: Rice root associated bacteria

ncbi_organism_name: Paraburkholderia unamae

ncbi_submitter: Institut de Recherche pour le Developpement


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Azohydromonas lata

ncbi_submitter: University of Milan


ncbi_country: USA: AL

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: CDC


ncbi_organism_name: Chryseobacterium sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: USA: New Hampshire; Manchester

ncbi_isolation_source: soil

ncbi_organism_name: Priestia megaterium


ncbi_country: China:Hubei; Wuhan

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EBI


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-11704

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Sphingomonadales bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Acholeplasmataceae bacterium


ncbi_country: Germany

ncbi_organism_name: Francisella tularensis subsp. tularensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North West University


ncbi_country: South Africa:Stellenbosch

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D4_bin-1324

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: Ohio

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: China: Jiangsu

ncbi_submitter: The First Affiliated Hospital of Guangzhou Medical University


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Shandong Second Medical University


ncbi_organism_name: Actinomadura livida

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: China: Tibet

ncbi_isolation_source: glacial till

ncbi_organism_name: Sphingomonas radiodurans

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_02_FULL_39_9


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_country: China: Qinghai-Tibetan Plateau; Qinghai lake

ncbi_isolation_source: sediments

ncbi_organism_name: Aquiflexum lacus

ncbi_submitter: State Key Laboratory of Biogeology and Environmental Geology


ncbi_organism_name: Porphyromonadaceae bacterium UBA7173

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_assembly_name: freshwater MAG --- MJ110830A_bin-237

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: rhizosphere soil of corn

ncbi_organism_name: Edaphocola flava

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: California Institute of Technology


ncbi_country: Ireland

ncbi_organism_name: Secundilactobacillus kimchicus

ncbi_submitter: University College Cork


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: India

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: Rifle well CD01 at time point 3 / C; 5m depth; 0.2 filter

ncbi_organism_name: Bacteroidetes bacterium GWC2_46_850

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium GWC2_46_850


ncbi_isolation_source: ammonia-oxidizing enrichment culture

ncbi_organism_name: bacterium HR20

ncbi_submitter: Japan Agency for Marine-Earth Science and Technology


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Planctomyces sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: EBI


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: Universidad Miguel Hernandez


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Thiotrichales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Sorangium sp. So ce295

ncbi_strain_identifiers: So ce295

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce295


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus W60774

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom:Wales

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Kyushu University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Romboutsia sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Michigan State University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Japan

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_country: Taiwan

ncbi_isolation_source: Human

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Potsdam


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Acinetobacter oleivorans DR1

ncbi_submitter: BGI


ncbi_country: China: Hainan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute


ncbi_organism_name: Steroidobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Bauldia sp.

ncbi_submitter: University of Waterloo


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Streptomyces pseudogriseolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: India: lake in Moyar

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Aphanothece hegewaldii CCALA 016

ncbi_strain_identifiers: CCALA 016

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Haemophilus paraphrohaemolyticus HK411

ncbi_submitter: J. Craig Venter Institute


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: marine

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptomyces griseofuscus


ncbi_organism_name: Chloroflexia bacterium

ncbi_submitter: University of California Berkeley


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Jikei University School of Medicine


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer sampled inside a natural surface slick

ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Linnaeus University


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Italy: Milan

ncbi_isolation_source: Forehead healthy skin

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: IRCCS Ospedale Galeazzi - Sant'Ambrogio


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: China Agricultural University


ncbi_country: Colombia

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: JCVI


ncbi_country: China: Hangzhou

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Shouchella clausii

ncbi_submitter: Institute of Biotechnology


ncbi_country: Switzerland

ncbi_isolation_source: feces

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Porphyromonadaceae bacterium UBA7095


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_01_FULL_39_24


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Saint-Louis Hospital


ncbi_country: China

ncbi_isolation_source: river water

ncbi_organism_name: Duganella lactea

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA13

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of verona


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Aureibacter tunicatorum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Washington;Seattle

ncbi_isolation_source: Unknown Specimen Type

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: China: East China Sea

ncbi_isolation_source: sediment sample obtained from the 1589 meters deep Okinawa Trough

ncbi_organism_name: Fictibacillus sp. S7

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: Portugal

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Russia: Samara

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: NIH


ncbi_submitter: SCELSE, Nanyang Technological University, Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx


ncbi_isolation_source: soil

ncbi_organism_name: Listeria innocua

ncbi_submitter: University of Tennessee


ncbi_organism_name: Streptomyces sp. NPDC059202

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Brazil: Presidente Prudente

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA: Washington

ncbi_submitter: Max von Pettenkofer-Institute


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_organism_name: Longimicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_assembly_name: Rumen uncultured genome RUG12290

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Curtobacterium citreum


ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Pectobacterium versatile

ncbi_submitter: Pennsylvania State University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Ewha Womans University Mokdong Hospital


ncbi_country: China: Guangdong

ncbi_isolation_source: cloacal swab

ncbi_submitter: South China Agricultural University


ncbi_submitter: University of Illinois at Urbana Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Piscinibacter sp.

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Yeosuana marina

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Xuzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: SRCAMB


ncbi_country: Australia: Melbourne

ncbi_isolation_source: wound

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_country: China: Jiaxing

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Jiaxing Center for Disease Control and Prevention


ncbi_organism_name: Anaerohalosphaeraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: metagenome

ncbi_organism_name: Candidatus Alangreenwoodia gallinarii

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Alangreenwoodia;s__Candidatus Alangreenwoodia gallinarii

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Alangreenwoodia;s__Candidatus Alangreenwoodia gallinarii


ncbi_country: South Korea

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: pus

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_strain_identifiers: CNPSo 105

ncbi_submitter: Empresa Brasileira de Pesquisa Agropecuaria


ncbi_isolation_source: Faeces


ncbi_country: Italy

ncbi_isolation_source: bovine cheese blue

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: uncultured Halomonas sp.


ncbi_country: Brazil

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_country: China: South China Sea

ncbi_isolation_source: cold spring

ncbi_organism_name: Exiguobacterium sp. s4

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. s4


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Edwardsiella tarda

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: INRAE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Sodalis sp. (in: enterobacteria)

ncbi_submitter: Free University of Bozen-Bolzano

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Bruguierivoracaceae;g__Sodalis;x__unclassified Sodalis (in: enterobacteria);s__Sodalis sp. (in: enterobacteria)


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Gemmatimonadales bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Desulfovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: University of Manitoba


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Maimonides Biomedical Research Institute of Cordoba


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institutes of Health, Malaysia


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Lebanese American University-Microbial Pathogenomics Lab


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Pyrinomonadaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Myxococcus faecalis

ncbi_submitter: CSIR-IMTECH


ncbi_organism_name: Morganella morganii

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Streptomyces sp. NPDC057545

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Fifth Affiliated Hospital, Southern Medical University


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Borrelia recurrentis

ncbi_submitter: Michigan State University


ncbi_organism_name: Agathobacter rectalis


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-05821

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Clostridium sp.

ncbi_submitter: University of Minnesota


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of East Anglia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: CEITEC VETUNI


ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Streptomyces sp. NBC_01635

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Tanzania

ncbi_isolation_source: Nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Halalkalibacillus halophilus DSM 18494

ncbi_submitter: DOE Joint Genome Institute