ncbi_country: Canada: Nunavut

ncbi_isolation_source: high Arctic cold saline sulfur spring anaerobic sediment

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: McGill University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Netherlands

ncbi_genome_representation: full

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University Medical Center Groningen


ncbi_assembly_level: Scaffold

ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: India: Chandigarh

ncbi_isolation_source: Female Nares

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_genome_category: derived from metagenome

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecalis 68A

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.


gtdb_representative: t

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Methylacidiphilae;o__Methylacidiphilales;x__unclassified Candidatus Methylacidiphilales;s__Candidatus Methylacidiphilales bacterium


ncbi_assembly_level: Complete Genome

ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: human

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P4 gut compartment

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_isolation_source: Blood

ncbi_submitter: SC


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: CA

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Burkholderia orbicola

ncbi_submitter: Kvitko Lab


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG12743

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA

ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 564012

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Ruminococcaceae bacterium UBA4257

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Acutalibacter ornithocaccae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Pacific Ocean: USA; Santa Monica Basin

ncbi_isolation_source: seep sediment enrichment culture

ncbi_organism_name: Anaerohalosphaeraceae bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Flavobacterium sp.


ncbi_organism_name: Prevotella sp. P5-108

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada: Guelph

ncbi_isolation_source: soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_country: China: Guangzhou

ncbi_isolation_source: soil surrounding the roots of peanut plants

ncbi_organism_name: Agrobacterium pusense

ncbi_submitter: South China Agricultural University


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Rhizobium sp. BK591

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain: Vitoria

ncbi_submitter: University of Oviedo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Pseudophaeobacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Methylorubrum extorquens AM1

ncbi_submitter: University of Washington Genome Center


ncbi_assembly_name: Rumen uncultured genome RUG12006

ncbi_organism_name: uncultured Streptococcus sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Odoribacteraceae bacterium

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Parasegetibacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Hyphomonas sp. UBA2660


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: France

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: uncultured Gemmatimonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: environmental waters

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: fetal lung

ncbi_organism_name: Campylobacter fetus subsp. venerealis

ncbi_submitter: INTA


ncbi_organism_name: Paraburkholderia sp. EG286B

ncbi_submitter: The James Hutton Institute


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Bacillota bacterium


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Empedobacter falsenii

ncbi_submitter: Yangzhou University


ncbi_organism_name: Acinetobacter sp. A7.4


ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: uncultured Sangeribacter sp.


ncbi_organism_name: Janthinobacterium sp. LB2P10

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Segatella copri

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Paraprevotella clara


ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_organism_name: Tenacibaculum halocynthiae

ncbi_submitter: Shantou University


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_submitter: Global Health Research Unit

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Sphingopyxis alaskensis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Nostoc sp. C110

ncbi_submitter: Boyce Thompson Institute


ncbi_organism_name: Achromobacter marplatensis

ncbi_strain_identifiers: BZR 926

ncbi_submitter: Institute Cytology and Genetics SB RAS


ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Daping Hospital, The Army Medical University


ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacillus cereus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universita Politecnica delle Marche


ncbi_organism_name: Cupriavidus necator

ncbi_submitter: Aarhus University


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Coprothermobacterota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: China: Dashan Tin-Zinc Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Burkholderiaceae bacterium


ncbi_assembly_name: freshwater MAG --- Loc080925-7m_bin-0080

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Broad Institute


ncbi_organism_name: [Clostridium] scindens

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Hangzhou Wahaha Group Co., LTD.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Foggia


ncbi_submitter: Christian Medical College


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Yersinia pestis PY-113

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Ocean University of China


ncbi_country: Korea:Woopo wetland

ncbi_isolation_source: fresh water

ncbi_organism_name: Spirosoma rigui

ncbi_refseq_category: reference genome

ncbi_submitter: Seoul Women's University

ncbi_type_material_designation: assembly from type material


ncbi_country: South Korea: Gyeongsangbuk-do

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Priestia megaterium

ncbi_submitter: KU Leuven


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Oxford


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Health Canada


ncbi_isolation_source: Portion of Sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: Liverpool Epidemic Strain

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_country: Belgium:North Sea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Methyloceanibacter marginalis

ncbi_submitter: Ghent University


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Shewanella frigidimarina NCIMB 400

ncbi_strain_identifiers: NCIMB 400

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Iowa State University


ncbi_country: Italy: Florence

ncbi_isolation_source: bronchoaspiration material

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: uncultured Erysipelotrichia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Pygmaiobacter massiliensis


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: INRAE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Poland

ncbi_organism_name: Citrobacter sp. wls708

ncbi_submitter: NanKai universit


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Microgenomates group bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;x__unclassified Microgenomates group;s__Microgenomates group bacterium


ncbi_country: USA: Point Barrow; Alaska

ncbi_isolation_source: bottom of first year landfast sea ice

ncbi_organism_name: Colwellia sp. BRX8-5

ncbi_submitter: University of Alaska Fairbanks


ncbi_organism_name: Escherichia coli KTE40

ncbi_submitter: Broad Institute


ncbi_country: Colombia: Pereira

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Italy: Trento; Comano Thermal Spring

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Candidatus Microgenomatus auricola

ncbi_taxonomy: d__Bacteria;p__Candidatus Microgenomatota;c__;o__;f__;g__Candidatus Microgenomatus;s__Candidatus Microgenomatus auricola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Microgenomatota;g__Candidatus Microgenomatus;s__Candidatus Microgenomatus auricola


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Enterobacter cloacae

ncbi_strain_identifiers: FDAARGOS 1431

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Streptococcus oralis

ncbi_submitter: University of Mississippi Medical Center


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Malaysia

ncbi_organism_name: Mycobacterium sp. UM_11

ncbi_submitter: Universiti Malaya


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_isolation_source: Caecum


ncbi_organism_name: Phyllobacterium trifolii

ncbi_strain_identifiers: CECT 7015

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Sichuan; panzhihua

ncbi_isolation_source: tobacco leaf

ncbi_organism_name: Pseudomonas savastanoi

ncbi_submitter: Chinese Academy of Agricultural Sciences Institute of Tobacco Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hamad Bin Khalifa University


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: Pseudomonas inefficax

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Roseobacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: rumen

ncbi_organism_name: Ruminococcaceae bacterium UBA2854

ncbi_submitter: University of Queensland


ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Spain

ncbi_isolation_source: Hospital Universitario Central de Asturias (Oviedo)

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: CNAG-CRG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_country: USA: Houston; TX

ncbi_isolation_source: parent strain RU1 evolved under selective conditions; LB evolved gen 500 Population GS

ncbi_strain_identifiers: RU1 LB2

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: China: Jinhua

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter sp. JH607

ncbi_submitter: Jinhua Central Hospital


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Roseburia hominis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Comoros

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bath


ncbi_country: USA: San Fransisco

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Candidatus Limisoma sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limisoma;x__unclassified Candidatus Limisoma;s__Candidatus Limisoma sp.


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Candidatus Fimimonas sp.

ncbi_submitter: Christian-Albrechts-University Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;c__Myxococcia;o__Myxococcales;x__Cystobacterineae;f__Myxococcaceae;x__Myxococcaceae incertae sedis;g__Candidatus Fimimonas;x__unclassified Candidatus Fimimonas;s__Candidatus Fimimonas sp.


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Dorea sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom: Gorse Covert

ncbi_isolation_source: Necrotic lesion of AOD affected tree

ncbi_organism_name: Brenneria goodwinii

ncbi_submitter: Bangor University


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-04258

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_organism_name: uncultured Candidatus Enterenecus sp.

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Enterenecus;x__environmental samples;s__uncultured Candidatus Enterenecus sp.


ncbi_organism_name: Eggerthellaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_country: USA: Connecticut

ncbi_isolation_source: clinical

ncbi_organism_name: Listeria monocytogenes

ncbi_strain_identifiers: OLM 11

ncbi_submitter: North Carolina State University


ncbi_country: South Korea

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Gangwon province Institute of Health & Environment


ncbi_country: China: NanJing

ncbi_isolation_source: partial denitrification and anammox bioreactor

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: NanJing University


ncbi_country: China: Shenzhen

ncbi_isolation_source: environmental

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: Radboud University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: bacterium


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Guangzhou

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China University of Technology


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Japan: Hokkaido

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Norway: Narvik

ncbi_isolation_source: air vent water in a clinic

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: University of Michigan


ncbi_country: USA

ncbi_isolation_source: human gut

ncbi_submitter: NHGRI/NIH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Anaerotruncus;s__Anaerotruncus massiliensis (ex Togo et al. 2019)


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: not available

ncbi_submitter: WTSI


ncbi_isolate: JBPPEFJP

ncbi_organism_name: Candidatus Stammera capleta

ncbi_strain_identifiers: JBPPEFJP

ncbi_submitter: Max Planck Institute for Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Stammera;s__Candidatus Stammera capleta


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China

ncbi_isolation_source: Environment

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA: DE

ncbi_isolation_source: soil

ncbi_submitter: Cornell University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Peradeniya


ncbi_organism_name: Pseudomonas sp. S1Bt23

ncbi_submitter: Ottawa Research and Development Center


ncbi_country: Denmark: Ejby Molle

ncbi_isolation_source: activated sludge from Ejby_18-Q3-R6-50

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Stutzerimonas stutzeri RCH2

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Stutzerimonas;x__Stutzerimonas stutzeri group;x__Stutzerimonas stutzeri subgroup;s__Stutzerimonas stutzeri;x__Stutzerimonas stutzeri RCH2


ncbi_isolation_source: Fermented soybean paste

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: World Institute of Kimchi


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 340


gtdb_type_species_of_genus: t

ncbi_country: China: middle reaches of the Yangtze River

ncbi_isolation_source: sediment from alluvial plain

ncbi_organism_name: Borborobacter arsenicus

ncbi_submitter: China University of Geosciences


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Cyanobacteriota bacterium


ncbi_organism_name: Raoultella sp. 18073

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Germany

ncbi_isolation_source: putrid secret

ncbi_organism_name: Streptobacillus moniliformis

ncbi_submitter: Jena University Hospital


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Cryptosporangiaceae bacterium


ncbi_organism_name: Bacillales bacterium

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_organism_name: uncultured Verrucomicrobiales bacterium


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Firmicutes bacterium UBA3906

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA3906


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Foggia


ncbi_assembly_name: Rumen uncultured genome RUG10621

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Malaysia: Sebatu; Malacca

ncbi_isolation_source: Clonal Culture

ncbi_organism_name: Bacillus sp. UMTAT18

ncbi_submitter: Monash University Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. UMTAT18


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID UWx21371

ncbi_submitter: University Hospital Regensburg


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Listeria innocua

ncbi_submitter: Independent University, Bangladesh


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_organism_name: Vicinamibacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Kitasatospora sp. NPDC088134

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Singapore

ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Australia: Ulupna; NSW

ncbi_organism_name: Prevotellaceae bacterium


ncbi_country: Spain: Murcia

ncbi_isolation_source: Mining area near to La Esperanza in Murcia; Spain

ncbi_organism_name: Acidiferrobacter sp. SPIII_3

ncbi_submitter: Fundacion Ciencia & Vida


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Sulfitobacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: India

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_strain_identifiers: Indica

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: Russia: Saint-Petersburg

ncbi_submitter: SRCAMB


ncbi_country: USA: New York

ncbi_organism_name: Bacteroides sp. MSK.20.82

ncbi_submitter: University of Chicago


ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho university


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: Bifidobacterium breve


ncbi_country: Pakistan

ncbi_isolation_source: bedside rail in hospital intensive care unit

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Netherlands: Leiden

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Leiden University


ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Streptomyces violaceusniger

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhodoluna limnophila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Canada: British Columbia

ncbi_isolation_source: throat

ncbi_organism_name: Pseudoxanthomonas winnipegensis

ncbi_submitter: National Microbiology Laboratory


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7043

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: garden soil (KRIBB; Daejeon; South Korea)

ncbi_organism_name: Pseudomonas kribbensis

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Vibrio cyclitrophicus


ncbi_country: Czech Republic: Ceske Budejovice; Rimov Reservoir

ncbi_isolation_source: freshwater reservoir

ncbi_organism_name: Limnohabitans planktonicus II-D5

ncbi_submitter: Biology Centre of ASCR, Institute of Hydrobiology


ncbi_country: Thailand

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Japan: Chubu

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Bielefeld University


ncbi_organism_name: uncultured Prolixibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Institute of Molecular Biology NAS Armenia


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: dtu national food institute


ncbi_organism_name: Pannonibacter phragmitetus

ncbi_submitter: NJAU


ncbi_organism_name: uncultured Eggerthella sp.


ncbi_organism_name: uncultured Fluviicola sp.


ncbi_organism_name: Streptomyces sp. NPDC059980

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Izemoplasmatales bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__unclassified Candidatus Izemoplasmatales;s__Candidatus Izemoplasmatales bacterium


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: University of Vienna


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Streptomyces mirabilis


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_assembly_name: Hybrid genome assembly using MiSeq and MinION

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Aerococcus urinaeequi

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter sp. Marseille-Q1620

ncbi_submitter: URMITE


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Achromobacter deleyi

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Atlantic Ocean: United States northeast coast

ncbi_isolation_source: Coastal ocean water [ENVO:00002150]

ncbi_organism_name: Bacillus sp. NTK071

ncbi_submitter: NIOZ Royal Netherlands Institute for Sea Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. NTK071


ncbi_organism_name: Acinetobacter oleivorans DR1

ncbi_submitter: Division of Environmental Science and Ecological Engineering, Korea University


ncbi_isolation_source: human gut

ncbi_organism_name: Collinsella aerofaciens


ncbi_organism_name: Bacillus cereus HD73

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus HD73


ncbi_country: China: Beijing

ncbi_isolation_source: sheep meat

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA

ncbi_organism_name: Lelliottia nimipressuralis

ncbi_submitter: University of Gothenburg - CCUG


ncbi_country: France

ncbi_isolation_source: stool

ncbi_organism_name: Vitreoscilla massiliensis

ncbi_submitter: INRS-Centre Armand-Frappier Sante Biotechnologie


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Germany

ncbi_isolation_source: animal

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides fragilis


ncbi_organism_name: Acutalibacter sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: India: Kolhapur

ncbi_isolation_source: milk sample

ncbi_organism_name: Bacillus sp. SAJ1

ncbi_submitter: National Centre for Cell Science Pune

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. SAJ1


ncbi_country: Burkina Faso: Toulfe

ncbi_isolation_source: Maari

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Copenhagen


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Exiguobacterium sp. Leaf187

ncbi_submitter: Max Planck Institute for Plant Breeding Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. Leaf187


ncbi_organism_name: Escherichia coli


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: Ireland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_country: USA: MN

ncbi_organism_name: Bacillus sp. AFS012607

ncbi_submitter: UNC Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AFS012607


ncbi_strain_identifiers: Frappier

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control, China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis;x__Mycobacterium tuberculosis variant bovis BCG;x__Mycobacterium tuberculosis variant bovis BCG str. Frappier


ncbi_country: Switzerland

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_organism_name: Variovorax sp.

ncbi_submitter: EPFL


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter japonicus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: surface water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Gryllotalpicola sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Brachyspira alvinipulli

ncbi_submitter: Animal and Plant Health Agency


ncbi_organism_name: uncultured Intestinibacter sp.

ncbi_submitter: EMG


ncbi_country: Spain: Cabra

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Virgen Macarena


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: gastro-intestinal tract

ncbi_organism_name: Helicobacter aurati

ncbi_submitter: University of Antwerp, Belgium


ncbi_country: Kenya

ncbi_organism_name: Candidatus Segatella violae

ncbi_submitter: University of Queensland


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Japan

ncbi_isolation_source: gastric biopsies

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: Urethral swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Mahidol University


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nankai University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Mali: Point G Hospital

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis MAL020144

ncbi_submitter: Broad Institute


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomic Center, National Institute of Infectious Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacteroides;s__Mycobacteroides abscessus;sb__Mycobacteroides abscessus subsp. massiliense;x__Mycobacteroides abscessus subsp. massiliense CCUG 48898 = JCM 15300


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolate: NCDC PS49

ncbi_isolation_source: Unknown

ncbi_organism_name: Clostridium perfringens

ncbi_strain_identifiers: NCDC PS49

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Erysipelothrix rhusiopathiae str. Fujisawa

ncbi_strain_identifiers: Fujisawa

ncbi_submitter: National Institute of Animal Health (Japan)


ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Bakchar Bog; Tomsk Area; West Siberia

ncbi_isolation_source: peat soil

ncbi_organism_name: Telmatospirillum siberiense

ncbi_submitter: University of Vienna


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Yunnan University


ncbi_organism_name: Lentilactobacillus sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: Acinetobacter radioresistens


ncbi_country: Arctic Ocean

ncbi_isolation_source: beach

ncbi_organism_name: Cobetia sp. L2A1

ncbi_submitter: Shandong University


ncbi_isolation_source: Sus scrofa domesticus

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: USA

ncbi_isolation_source: soil

ncbi_organism_name: Photorhabdus sp. S7-51

ncbi_submitter: University of Bern


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: marine water

ncbi_organism_name: Pseudomonas peli

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Spain: Alfacada pond; Ebro delta; Tarragona

ncbi_isolation_source: epidermal mucus of Anguilla anguilla fishes in Ebro delta

ncbi_organism_name: Acinetobacter venetianus

ncbi_submitter: University of Queensland


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Brisbane

ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: The University of Queensland


ncbi_country: USA: AK

ncbi_organism_name: Escherichia sp. MOD1-EC6162

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: pond water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_organism_name: Ottowia sp.

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: Genome assembly of M bovis MB2

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant caprae


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Neptunomonas phycophila

ncbi_submitter: Tang lab


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: FL

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_country: Norway

ncbi_isolation_source: FRDC_Fjaler soil; pH 3.7

ncbi_organism_name: Rhodanobacter sp. B05

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus parasuis

ncbi_submitter: Kobe Institute of Health


ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: Tanzania

ncbi_isolation_source: blood

ncbi_submitter: Muhimbili University of Health and Allied Sciences


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: Supragingival and interproximal dental plaque

ncbi_organism_name: Streptococcus vestibularis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: United Kingdom

ncbi_isolation_source: bulk soil from Arable land

ncbi_organism_name: Pseudomonas sp. A-B-19

ncbi_submitter: Rothamsted Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_country: Netherlands

ncbi_submitter: University Medical Center Groningen


ncbi_country: Australia

ncbi_isolation_source: extraintestinal site

ncbi_submitter: University of Technology Sydney


ncbi_country: China

ncbi_isolation_source: sewage

ncbi_organism_name: Aeromonas sp. QDB62

ncbi_submitter: Soochow University


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: USA: NYC

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: New Jersey Medical School-Rutgers University


ncbi_submitter: Huzhou CDC


ncbi_isolation_source: feces

ncbi_submitter: China Agricultural University


ncbi_country: USA: Evans County; Georgia

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EBI


ncbi_country: Germany

ncbi_organism_name: Clostridiaceae bacterium 14S0207

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: sediment

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Clostridium sp. CAG:354

ncbi_submitter: DTU


ncbi_country: USA: Daniel Boone National Forest; KY

ncbi_isolate: MAG 8

ncbi_isolation_source: acid mine drainage site biofilm from emergence; outflow channel; and Rose Pool

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_strain_identifiers: MAG 8

ncbi_submitter: University of California Davis


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_country: China: Chifeng City; Inner Mongolia Province

ncbi_organism_name: Escherichia coli

ncbi_submitter: SCAU


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: freshwater MAG --- VK_bin-2246

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Rakuno Gakuen University; Mansoura University; Zewail City of Science and Technology


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_organism_name: uncultured Luteolibacter sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Czech Academy of Science


ncbi_country: USA

ncbi_organism_name: Escherichia coli PA31

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mucispirillum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lentisphaeria bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Nocardioides sp. NPDC000441

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Nocardia aurea


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Candidatus Ichthyocystis sparus

ncbi_submitter: Functional Genomics Genter Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Candidatus Ichthyocystis;s__Candidatus Ichthyocystis sparus


ncbi_organism_name: bacterium


ncbi_organism_name: uncultured Pirellulaceae bacterium


ncbi_country: USA: GA; Athens

ncbi_isolation_source: surface seawater inoculated into a synthetic phycosphere

ncbi_organism_name: Thalassospira sp. HF15

ncbi_submitter: University of Georgia


ncbi_country: Japan

ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_country: Canada: Atlantic

ncbi_isolation_source: Herd 412

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 6071

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_country: Italy

ncbi_isolation_source: Skin Swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_country: Bangladesh

ncbi_isolation_source: soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_isolation_source: Novel

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Brigham Young University


ncbi_country: China: Suzhou

ncbi_isolation_source: feces

ncbi_organism_name: Anaerotignum sp. MSJ-24

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: Pakistan: Bahwalpur; Punjab

ncbi_isolation_source: leaves

ncbi_organism_name: Pantoea sp. B_9

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University Hospital of Antwerp


ncbi_country: USA: Tacoma; Washington

ncbi_isolation_source: aquifer contaminated with chlorinated ethenes

ncbi_organism_name: Sulfurospirillum diekertiae

ncbi_submitter: Friedrich Schiller University Jena


ncbi_country: France: Paris

ncbi_isolation_source: Rectal

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University Hospital of Besancon


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_country: France: Valence

ncbi_isolation_source: Microcystis non-axenic culture inoculated from freshwater pond water

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Equipe "Cyanobactéries, cyanotoxines et Environnement"


ncbi_country: USA: Pennsylvania; Pittsburgh

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Germany: Kraichtal

ncbi_organism_name: Buttiauxella sp. S04-F03

ncbi_submitter: TZW: DVGW-Technologiezentrum Wasser


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Bifidobacterium bifidum NCIMB 41171

ncbi_strain_identifiers: NCIMB 41171

ncbi_submitter: Broad Institute


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Stenotrophomonas sp. GD03744

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Candidatus Competibacteraceae bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Candidatus Competibacteraceae bacterium


ncbi_organism_name: Edwardsiella piscicida

ncbi_strain_identifiers: FSW910410 virulent

ncbi_submitter: Pukyong national university


ncbi_organism_name: Photorhabdus africana

ncbi_strain_identifiers: CRI-LC

ncbi_submitter: University of Neuchatel


ncbi_isolation_source: egg surface

ncbi_organism_name: Flavobacterium cupriresistens

ncbi_submitter: Erciyes University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA:Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: China: Haixi city

ncbi_organism_name: Nocardioides pantholopis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudolysinimonas sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_isolation_source: mouse gut metagenome


ncbi_country: Thailand: Ubon

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Micr

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Actinobacillus equuli subsp. equuli

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_country: China: Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Italy: Sicily

ncbi_isolation_source: wound exudate

ncbi_organism_name: Clostridium botulinum B2 450

ncbi_submitter: Army Medical and Veterinary Research Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium botulinum;x__Clostridium botulinum B2 450


ncbi_isolation_source: feed additive Enterosan

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: university of ljubljana, biotechnical faculty


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: human gut

ncbi_organism_name: Sutterellaceae bacterium

ncbi_submitter: EMG


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: Richmond; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: USA: California

ncbi_isolation_source: well water

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Diaphorobacter sp.


ncbi_organism_name: Alloacidobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: Florida; Tampa

ncbi_isolation_source: Patient stools

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of South Florida


ncbi_country: South Korea: Busan

ncbi_isolation_source: marine

ncbi_organism_name: Microbulbifer thermotolerans

ncbi_submitter: Dong-A University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Texas

ncbi_isolation_source: Subiliac Lymph Node

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Alexandria University


ncbi_organism_name: Shewanella glacialipiscicola

ncbi_submitter: Nofima


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Uniformed Services University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Center for Genome Regulation (CRG)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: University of Lausanne


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_organism_name: uncultured Aquabacterium sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__environmental samples;s__uncultured Aquabacterium sp.


ncbi_organism_name: Duffyella gerundensis


ncbi_organism_name: uncultured Alteromonadaceae bacterium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Gallibacterium anatis

ncbi_strain_identifiers: SCPM-O-B-15314 (Sitno2)

ncbi_submitter: SRCAMB


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Burkholderiales bacterium


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Biotechnology


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Bicetre hospital


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_assembly_level: Chromosome

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Institute of Aquaculture, University of Stirling, Stirling, UK


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: University of Queensland


ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_organism_name: Ellagibacter isourolithinifaciens


ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Bibersteinia trehalosi

ncbi_strain_identifiers: SKBRP 197

ncbi_submitter: University of Saskatchewan


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core A

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Gammaproteobacteria bacterium UBA3977


ncbi_country: Antarctica: Eastern Antarctica; Mount Seuss

ncbi_isolate: MSU bin61

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: MSU bin61

ncbi_submitter: Monash University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Mesorhizobium sp. ISC11

ncbi_submitter: University of Florence


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: kidney

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_country: Greece: Santorini; Kolumbo

ncbi_isolation_source: submarine volcano

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hellenic Centre for Marine Research (HCMR)


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Methylobacterium sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Cuba: Parque Nacional Topes de Collantes; Sierra del Escambray

ncbi_isolation_source: termite gut

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: China: Zhengzhou

ncbi_organism_name: Paulownia witches'-broom phytoplasma

ncbi_strain_identifiers: Zhengzhou

ncbi_submitter: Henan Agricultural university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrI (Aster yellows group);s__Paulownia witches'-broom phytoplasma


ncbi_organism_name: Nitrosomonadaceae bacterium

ncbi_submitter: Joint Institute for Nuclear Research


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: NSU Genome Research Institute (NGRI)


ncbi_country: USA: Wisconsin

ncbi_isolation_source: nasal lavage

ncbi_organism_name: Kocuria sp. HSID17590

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Fimbriiglobus sp.

ncbi_submitter: Zhejiang University


ncbi_country: Germany

ncbi_isolation_source: Tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Wageningen University & Research


ncbi_country: Taiwan: Taoyuan city

ncbi_isolation_source: Lychee

ncbi_organism_name: Leuconostoc litchii

ncbi_submitter: Food Industry Research and Development Institute


ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Australia

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_country: Japan

ncbi_organism_name: Morganella morganii

ncbi_submitter: Toho University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Italy: Firenze

ncbi_isolation_source: Respiratory sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Genoa


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Streptomyces sp. ISL-44

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_isolation_source: gastric biopsies

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Hannover

ncbi_organism_name: Psittacicella hinzii

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Variovorax sp.


ncbi_country: USA: Davis; California

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_country: USA: Texas

ncbi_isolation_source: Simulated distribution system annular reactor

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: Russia: Moscow region

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SRCAMB


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Eisenbergiella porci


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_strain_identifiers: acrnz

ncbi_submitter: NHGRI/NIH


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: South Korea: Chungnam National University (CNU) agricultural research site

ncbi_isolation_source: rice paddy soil

ncbi_organism_name: Shewanella sp. DNRA4

ncbi_submitter: KAIST


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Israel

ncbi_organism_name: Nostoc linckia z14

ncbi_submitter: The University of Hong Kong


ncbi_country: United Kingdom

ncbi_isolation_source: Faeces

ncbi_organism_name: Shigella sonnei


ncbi_country: Norway

ncbi_isolation_source: Retail sushi

ncbi_organism_name: Aeromonas rivipollensis

ncbi_submitter: NTNU


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: China: Quzhou

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: CAU


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycobacterium botniense

ncbi_submitter: Department of Infection Metagenomics, Osaka University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: South Africa: Ethekwini district; KwaZulu-Natal

ncbi_isolation_source: Peadiatric - unoccupied bed

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: Italy

ncbi_isolation_source: salami paste production

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: Norway: Byfjorden; Bergen

ncbi_isolation_source: biofilm scrapped from cow tibia surface after nine month of incubation underwater in a fjord

ncbi_organism_name: Desulfuromonadaceae bacterium

ncbi_submitter: ProBone


ncbi_country: China: Zhejiang

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Switzerland

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Agroscope


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: South Korea

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: Sphingomonas sediminicola

ncbi_submitter: Kyung Hee University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Legionellales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Salinisphaera sp. T5B8

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia diffusa

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Cypionkella sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: uncultured Elusimicrobia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: China: Hangzhou

ncbi_genome_representation: partial

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: dianzhenduan


ncbi_country: Russia: Irkutsk; Ushakovka river

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Irkutsk Antiplague Research Institute of Rospotrebnadzor


ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: University of California, Davis


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;s__Candidatus Kaiserbacteria bacterium RIFCSPHIGHO2_02_FULL_50_9


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: USA

ncbi_organism_name: Curtobacterium poinsettiae

ncbi_strain_identifiers: CFBP 2403

ncbi_submitter: University of Tehran


ncbi_organism_name: Escherichia coli

ncbi_submitter: Research Network Zoonotic Infectious Diseases


ncbi_country: USA: Ellis Island; Alton; MO

ncbi_isolation_source: wetland soil

ncbi_organism_name: Cereibacter sphaeroides

ncbi_submitter: Washington University in St Louis


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_country: Netherlands

ncbi_isolation_source: Water; lake; Lake Loosdrecht; The Netherlands

ncbi_submitter: JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Prochlorotrichales;f__Prochlorotrichaceae;g__Prochlorothrix;s__Prochlorothrix hollandica;x__Prochlorothrix hollandica PCC 9006 = CALU 1027


ncbi_country: France: Paris

ncbi_isolation_source: sputum

ncbi_strain_identifiers: BCG

ncbi_submitter: Sorbonne Universites, UPMC Univ Paris 06

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis;x__Mycobacterium tuberculosis variant bovis BCG


ncbi_country: China: Shenzhen

ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: UR oenologie


ncbi_country: USA: CA

ncbi_isolation_source: Raw nectarines

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: California Department of Public Health


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: gut

ncbi_organism_name: Collinsella sp.

ncbi_submitter: University of Queensland


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Colwelliibacteriota;s__Candidatus Colwellbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_41_28


ncbi_country: USA:Alaska; North Slope; Kuparuk formation

ncbi_isolation_source: oil reservoir sample K3

ncbi_organism_name: Thermotoga sp. 47_83

ncbi_submitter: Lawrence Berkeley National Lab


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: University of South Australia


ncbi_country: Antarctica: Eastern Antarctica; Mount Seuss

ncbi_isolate: MSU bin26

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: MSU bin26

ncbi_submitter: Monash University


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Farm workers

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Christian Medical College


ncbi_assembly_name: Rumen uncultured genome RUG13339

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Streptomyces calidiresistens

ncbi_submitter: Nicolaus Copernicus University


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_country: Germany: Stuttgart

ncbi_isolation_source: whole adult male insect

ncbi_organism_name: Candidatus Tisiphia sp.

ncbi_submitter: University of Liverpool


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Panama: Bocas del Toro

ncbi_isolation_source: gills

ncbi_organism_name: Candidatus Thiodiazotropha taylori

ncbi_submitter: University of California, Davis


ncbi_organism_name: uncultured Marvinbryantia sp.

ncbi_submitter: EBI


ncbi_country: Burkina Faso

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_country: France

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Valencia


ncbi_country: Germany: Animal Facility; Justus-Liebig-University; Giessen

ncbi_isolation_source: Surface of a sandy sediment particle present in tank 6 of a marine aquarium containing stony-coral fragments and water maintained at 26 degree C

ncbi_organism_name: Vibrio sp. THAF64

ncbi_submitter: Uni Bielefeld


ncbi_country: Pakistan: Punjab

ncbi_isolation_source: infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_organism_name: Vibrio neptunius

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_isolation_source: human gut

ncbi_organism_name: Bacillus massilionigeriensis

ncbi_submitter: EMG


ncbi_organism_name: Spongiibacter marinus

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Brazil: Parana

ncbi_organism_name: Paraburkholderia sp. CNPSo 3281

ncbi_strain_identifiers: CNPSo 3281

ncbi_submitter: Universidade Estadual de Ponta Grossa


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Staphylococcus sp.

ncbi_submitter: NEW YORK UNIVERSITY SCHOOL OF MEDICINE


ncbi_country: Spain: Salinas at Santa Pola

ncbi_isolation_source: marine saltern

ncbi_organism_name: Rhodothalassium salexigens

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 342

ncbi_submitter: SC


ncbi_organism_name: Bacillus cereus m1550

ncbi_submitter: Naval Medical Research Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus m1550


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Nomada ferruginata


ncbi_isolation_source: Human (gut)

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Italy: Veneto

ncbi_isolation_source: rabbit carcass

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Bologna


ncbi_country: USA

ncbi_submitter: FDA


ncbi_country: Thailand

ncbi_isolation_source: Canal

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Microbacterium endophyticum

ncbi_strain_identifiers: CECT 8354

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus


ncbi_country: USA: University of California at Los Angeles

ncbi_submitter: Ares Genetics GmbH


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cf087

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: India: Vellore

ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_isolation_source: Dairy fermentation

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: University College Cork


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: USA: Columbia River; Washington; USA

ncbi_isolation_source: river sediment

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Mexico: Guaymas Basin

ncbi_isolation_source: marine sediment

ncbi_organism_name: bacterium

ncbi_submitter: University of Texas at Austin


ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom

ncbi_isolation_source: pig

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Yersinia pestis CMCC96007

ncbi_submitter: Beijing Genomics Institute


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Fengtai Region for Disease Control and Prevention, Beijing,China


ncbi_country: France: Neuville; Lake Fargette

ncbi_isolation_source: size-fractionated lake water incubated for 31 months

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Candidatus Stoquefichus massiliensis

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Coprococcus comes


ncbi_country: South Korea: Seoul

ncbi_isolation_source: Intestinal tract

ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Korea Food Research Institute


ncbi_organism_name: Collinsella sp. SGI.033

ncbi_submitter: University of Manitoba


ncbi_country: France: Rouen

ncbi_isolation_source: vascular prosthesis infection

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: EA2656 GRAM


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Demequina maris

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_organism_name: Bradymonadia bacterium

ncbi_submitter: University of East Anglia


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: Drain

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: tuna

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden;x__Salmonella enterica subsp. enterica serovar Weltevreden str. 1655


ncbi_country: Paraguay: Coronel Oviedo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: Nitrospirales bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Sweden

ncbi_organism_name: Escherichia coli 09BKT078844

ncbi_submitter: Institute for Genome Sciences


ncbi_country: United Kingdom:Wiltshire

ncbi_isolation_source: skin infection

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: Human

ncbi_organism_name: Clostridioides difficile


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M078S1

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: University of L'Aquila


ncbi_organism_name: Buttiauxella agrestis

ncbi_submitter: University of Veterinary Sciences


ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Cyanophyceae cyanobacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Nitrosomonas europaea

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Vibrio harveyi

ncbi_strain_identifiers: ML 1

ncbi_submitter: Hellenic Centre for Marine Research