ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Netherlands

ncbi_isolation_source: pork

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: USDA-ARS-NADC


ncbi_assembly_level: Scaffold

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Russia: Moscow

ncbi_isolation_source: sputum

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


gtdb_representative: t

ncbi_country: Pacific Ocean: Station ALOHA

ncbi_isolation_source: Trichodesmium-associated heterocystous diazotroph (hetDA) enrichment; trichodesmium colony originally collected aboard the R/V Kilo Moana (KM10-13) near Station ALOHA

ncbi_organism_name: Oceanococcus sp. HetDA_MAG_MS8

ncbi_submitter: University of Southern California


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: France

ncbi_isolation_source: Human

ncbi_organism_name: Corynebacterium ramonii

ncbi_submitter: Institut Pasteur

ncbi_type_material_designation: assembly from type material


ncbi_country: Germany: Cologne

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eggerthella sp.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Indonesia: Tangerang

ncbi_isolation_source: soy product

ncbi_organism_name: Weissella confusa

ncbi_submitter: University of Otago


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Veblenbacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Vebleniibacteriota;x__unclassified Candidatus Veblenbacteria;s__Candidatus Veblenbacteria bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: metagenome


ncbi_country: Australia

ncbi_organism_name: Acinetobacter baumannii D1279779

ncbi_submitter: Macquarie University


ncbi_assembly_level: Chromosome

ncbi_country: Sudan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Khartoum


ncbi_country: Nigeria: Owerri; Imo State

ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal University Ndufu-Alike


gtdb_type_species_of_genus: t

ncbi_organism_name: Thermoflavifilum aggregans

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_country: Singapore

ncbi_isolation_source: air

ncbi_organism_name: Nissabacter sp. SGAir0207

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_submitter: Iowa state University


ncbi_isolation_source: Seawater was collected from off Geoje Island in the South Sea; South Korea

ncbi_organism_name: Aliiroseovarius pelagivivens

ncbi_strain_identifiers: CECT 8811

ncbi_submitter: UVEG


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Sorangium sp. So ce375

ncbi_strain_identifiers: So ce375

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce375


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_submitter: CDC Prevention Epicenter Program


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: coastal sediment

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: Veillonella dispar

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptomyces sp. NPDC047869

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Massilia sp. DWR3-1-1

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_country: South Korea

ncbi_isolation_source: tidal flat sediment

ncbi_organism_name: Proteiniclasticum aestuarii

ncbi_submitter: Korea Institute of Ocean Science and Technology


ncbi_country: USA: PA

ncbi_isolation_source: bovine cow colon

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: South Korea: Janggye site in the Daechung Reservoir

ncbi_isolation_source: water

ncbi_organism_name: Mucilaginibacter straminoryzae

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_country: United Kingdom: London

ncbi_isolation_source: not available: to be reported later

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. dysgalactiae


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Idaho

ncbi_isolation_source: biofilm from indoor freshwater fish hatchery

ncbi_organism_name: Pseudomonas aphyarum

ncbi_submitter: University of Connecticut Graf Lab


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 15m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Rhodococcoides fascians D188

ncbi_submitter: New Mexico State University


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: University of Turin


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: Estonia

ncbi_isolation_source: feces

ncbi_submitter: University of Tartu


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Lanzhou; Gansu

ncbi_isolation_source: soil

ncbi_organism_name: Bradyrhizobium sp. AUGA SZCCT0182

ncbi_strain_identifiers: AUGA SZCCT0182

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Alteriqipengyuania sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Aeromicrobium alkaliterrae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Leuconostoc citreum

ncbi_submitter: Bangabandhu Sheikh Mujibur Rahman Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Japan

ncbi_isolation_source: Uriue

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Toho University


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Stockholm University


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: China: Anhui

ncbi_isolation_source: meat

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_country: China: Jinhua

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Paracoccus aurantius

ncbi_submitter: Incheon National University


ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: EMG


ncbi_country: USA: IL

ncbi_isolation_source: honey powder

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_country: France

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: University of Turin


ncbi_submitter: SRCAMB


ncbi_country: China: Yunnan

ncbi_organism_name: Leptospira weilii serovar Heyan

ncbi_submitter: NIFDC


ncbi_country: USA: Duckabush

ncbi_isolation_source: plankton

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile


ncbi_country: Japan:Iwate; Morioka

ncbi_isolation_source: alfalfa silage

ncbi_organism_name: Ligilactobacillus pabuli

ncbi_submitter: Research Center of Genetic Resources, NARO


ncbi_country: Namibia

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Universite catholique de Louvain


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_country: China: Weihai

ncbi_isolation_source: sediment

ncbi_organism_name: Hyunsoonleella flava

ncbi_submitter: Shandong University


ncbi_country: USA: California

ncbi_organism_name: Sinorhizobium medicae

ncbi_submitter: Washington State University Vancouver


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Mogibacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_country: USA: Miami

ncbi_isolation_source: urinogenital fluid

ncbi_organism_name: Neisseria gonorrhoeae MIA_2011_03-10

ncbi_submitter: Read Laboratory, Emory University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Australia

ncbi_isolation_source: 3 replicate cellulose-degrading anaerobic digesters sampled at day 96 and day 362

ncbi_organism_name: Fibrobacterales bacterium Fibro_03

ncbi_submitter: University of Queensland


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sphingobium cupriresistens

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lentisphaerota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__environmental samples;s__uncultured Lentisphaerota bacterium


ncbi_isolation_source: clinical material

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wadsworth Center - NYS DOH


ncbi_organism_name: Vibrio rotiferianus

ncbi_submitter: Shantou University


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Shigella flexneri

ncbi_submitter: Bangladesh Agricultural University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom: University of Nottingham; Sutton Bonington Dairy Centre

ncbi_isolation_source: slurry tank

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Nottingham


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: BGI


ncbi_country: Mexico: Mexico city

ncbi_isolation_source: bronchial washing

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Facultad de Medicina, Universidad Nacional Autonoma de Mexico


ncbi_country: Netherlands

ncbi_isolation_source: nodule

ncbi_organism_name: Parafrankia colletiae

ncbi_submitter: University of New Hamshire


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG11950

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Methylophaga sp.

ncbi_submitter: Portland State University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Porcinotec Co., Ltd


ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Stenotrophomonas sepilia

ncbi_submitter: Jawaharlal Nehru University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_submitter: Translational Health Science and Technology Institute


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Chlorohelix allophototropha

ncbi_submitter: University of Waterloo

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Candidatus Chloroheliales;f__Candidatus Chloroheliaceae;g__Candidatus Chlorohelix;s__Candidatus Chlorohelix allophototropha

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;o__Candidatus Chloroheliales;f__Candidatus Chloroheliaceae;g__Candidatus Chlorohelix;s__Candidatus Chlorohelix allophototropha


ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Friedrich-Schiller University Jena

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Christensenellales bacterium


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho university


ncbi_country: China: Bubeng

ncbi_isolation_source: termite gut

ncbi_organism_name: Streptococcaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Japan

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Tokyo Medical And Dental University


ncbi_organism_name: Kitasatospora sp. NPDC008115

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_isolation_source: forest soil

ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: University of California, Riverside


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Zurich


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0420

ncbi_submitter: Broad Institute


ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Pacific Ocean: Lau Basin

ncbi_submitter: Portland State University


ncbi_organism_name: Lactobacillus iners

ncbi_submitter: The University of Texas MD Anderson Cancer Center


ncbi_country: China: Nanjing

ncbi_isolation_source: laboratory-scale bioreactor denitrification and anammox communities

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: NanJing University


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: University of South Africa


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kamdhenu University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: TGen North


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_submitter: Zhejiang Chinese Medical University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Oregon State University


ncbi_organism_name: Gluconobacter albidus

ncbi_submitter: Teagasc


ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Strathcona


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudomonas syringae pv. tagetis

ncbi_submitter: USDA-ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 7;x__Pseudomonas syringae pv. tagetis


ncbi_organism_name: Streptococcus pluranimalium

ncbi_submitter: JiLin Agricultural Scuence and Technolog


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_organism_name: Pseudocitrobacter faecalis

ncbi_submitter: Faculty of Health Sciences


ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Sanmen People's Hospital


ncbi_organism_name: bacterium


ncbi_isolate: metabat2_coassembly_bwa.583 MAG

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_strain_identifiers: metabat2_coassembly_bwa.583 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Vienna


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: STATENS SERUM INSTITUT


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Lentisphaerota bacterium

ncbi_submitter: University of California, Santa Barbara

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerota bacterium


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Guangdong Academy of Agricultural Sciences


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter geojensis

ncbi_submitter: Shantou University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Iowa


ncbi_submitter: UW-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. paratuberculosis;x__Mycobacterium avium subsp. paratuberculosis JQ5


ncbi_isolation_source: USA

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: University of Minnesota


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Jiangsu

ncbi_isolation_source: gallbladder

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou university


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Austria: Vienna

ncbi_isolation_source: 10 mM sulfoquinovose-amended vegetarian human fecal microcosm

ncbi_organism_name: Acidaminococcaceae bacterium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Charles University in Prague


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Trichococcus sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Oldenburg


ncbi_country: Denmark: Skive

ncbi_isolation_source: activated sludge from Skiv_18-Q3-R9-52

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: metagenome

ncbi_organism_name: Limosilactobacillus oris

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Taiwan

ncbi_isolation_source: bloodstream

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thermaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: USA: San Francisco

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chan Zuckerberg Biohub


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: AAFC


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: District of Columbia

ncbi_isolation_source: Surveillance

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Malacoplasma sp.

ncbi_submitter: China Agricultural University


ncbi_country: USA: California; Alameda County

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Danish Veterinary Consortium and AniCon


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: BGI


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Wound Secretion

ncbi_submitter: SC


ncbi_country: Taiwan: Hospital

ncbi_isolation_source: plasma

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: National Chung Cheng University


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: addis ababa university


ncbi_country: Australia: Queensland

ncbi_isolation_source: Skin lesion swab

ncbi_organism_name: Staphylococcus agnetis

ncbi_submitter: The University of Queensland


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Spain: Catalunya

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_isolation_source: stool

ncbi_organism_name: Dialister massiliensis

ncbi_submitter: URMITE


ncbi_organism_name: Mycolicibacterium septicum

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: China: Hangzhou

ncbi_isolation_source: semen

ncbi_organism_name: Ureaplasma parvum

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_isolation_source: Air

ncbi_organism_name: Naasia aerilata

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Daviesbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Daviesiibacteriota;x__unclassified Candidatus Daviesbacteria;s__Candidatus Daviesbacteria bacterium


ncbi_country: USA: WI

ncbi_isolation_source: Skin/Wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Wisconsin State Laboratory of Hygiene


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_country: USA: Ohio

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Syntrophotalea carbinolica DSM 2380

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Kenya

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Chile: Valdivia

ncbi_isolation_source: Poultry meat

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Universidad Austral de Chile


ncbi_country: India: Arunachal Pradesh

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: All India Institute Of Medical Science Bhopal


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_submitter: The Italian National Institute of Health


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_country: China: Beijing

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_country: France

ncbi_submitter: Laboratoire Bacteriologie, hopital bicetre


ncbi_organism_name: Candidatus Phytoplasma stylosanthis

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrVIII (Loofah witches'-broom group);s__Candidatus Phytoplasma stylosanthis


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stutzerimonas kunmingensis

ncbi_submitter: University of Queensland


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Hengyang

ncbi_isolation_source: bile

ncbi_submitter: The Second Affiliated Hospital of Hengyang Medical School, University of South China


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: Salmonella enterica

ncbi_strain_identifiers: SZL 38

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: New Zealand: Canterbury region

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Oenococcus oeni PSU-1

ncbi_submitter: US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria Genome Consortium and Fidelity Systems Inc.


ncbi_country: USA: Seattle

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_country: Turkey: Ordu

ncbi_isolation_source: Atacama Desert soil

ncbi_organism_name: Micromonospora globispora

ncbi_submitter: Newcastle University


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: bioMerieux


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yanofskyibacteriota;s__Candidatus Yanofskybacteria bacterium RIFOXYD1_FULL_44_17


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Escherichia coli 55989

ncbi_submitter: Institut Pasteur and Genoscope


ncbi_organism_name: Helicobacter pylori CPY6311

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Pseudarthrobacter sp. NPDC089323

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Texas

ncbi_organism_name: Halanaerobium sp. DL-01

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Denmark

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis


ncbi_country: Colombia: Putumayo

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South American MRSA Consortium


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Bacteroidales bacterium UBA5371

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA5371


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Butyricicoccaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: Hawaii

ncbi_isolation_source: blood


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: caecum

ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: AAFC


ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus pneumoniae 2070035

ncbi_submitter: Academic Medical Center Amsterdam, The Netherlands


ncbi_country: USA: PA

ncbi_isolation_source: pleural cavity

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: dairy farm soil

ncbi_submitter: Lincoln University


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Yantai University


ncbi_country: USA: OH

ncbi_isolation_source: soil

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_assembly_name: freshwater MAG --- Umea_bin-10148

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Micavibrio sp. UBA1672


ncbi_assembly_name: freshwater MAG --- Ja1_bin-4102

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Firmicutes bacterium CAG:534

ncbi_submitter: DTU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:534


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2-011-08_S4_C3

ncbi_submitter: IGS


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_isolation_source: abscess facial

ncbi_organism_name: Propionibacterium sp. HMSC067A01

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: Chicken meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_country: Finland

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: University of Copenhagen


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: South Korea: Seoul

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: beef

ncbi_organism_name: Clostridium estertheticum

ncbi_submitter: University of Zurich


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Luminiphilus sp.

ncbi_submitter: marine college, shandong university


ncbi_country: China: Beijing

ncbi_isolation_source: animal manure

ncbi_organism_name: Roseburia sp. 1XD42-34

ncbi_submitter: Chinese Academy of Science


ncbi_submitter: EPFL


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Treponema sp.

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Nanjing Drum Tower Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Australia: NSW; Port Stephens

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: NSW Department of Primary Industries


ncbi_organism_name: Oerskovia paurometabola

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_assembly_name: Rumen uncultured genome RUG14531

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ureaplasma sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: Rumen uncultured genome RUG10870

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: Sputum

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Streptomyces sp. NPDC052676

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Microvirga sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Actinospica sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Microbacterium immunditiarum

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolate: Clinical

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Clinical

ncbi_submitter: newcastle university


ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore

ncbi_type_material_designation: assembly designated as neotype


ncbi_organism_name: Streptomyces californicus


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Canada: Ontario; Toronto

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama;x__Salmonella enterica subsp. enterica serovar Panama str. SA20030878


ncbi_strain_identifiers: Naam

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Naam;x__Leptospira interrogans serovar Naam str. Naam


ncbi_country: France

ncbi_isolation_source: conjonctiva

ncbi_organism_name: Lentilactobacillus buchneri

ncbi_strain_identifiers: CIRM-BIA 664

ncbi_submitter: Brigham Young University


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: caecum of adult hen

ncbi_organism_name: Marseilla massiliensis

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: human throat

ncbi_organism_name: Ewingella americana ATCC 33852

ncbi_submitter: UW-GEL (University of Wisconsin - Genome Evolution Laboratory)


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_country: Australia

ncbi_isolation_source: 3 replicate cellulose-degrading anaerobic digesters sampled at day 96 and day 362

ncbi_organism_name: Thermotogales bacterium Thermo_01

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: uncultured Dyadobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Portugal

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Instituto de Tecnologia Quimica e Biologica Antonio Xavier


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Mediterraneibacter avicola

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Lacticaseibacillus paracasei subsp. tolerans

ncbi_submitter: World Institute of Kimchi


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China:Zhejiang Zhoushan

ncbi_isolation_source: activated sludge

ncbi_organism_name: Christiangramia crocea

ncbi_submitter: Zhejiang University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces


ncbi_country: USA

ncbi_organism_name: Patulibacter americanus DSM 16676

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Nigeria

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: [Eubacterium] saphenum

ncbi_submitter: University of Alberta


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_country: USA: Central Florida

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Morganella morganii

ncbi_submitter: University of Central Florida


ncbi_isolation_source: fruit powder

ncbi_organism_name: Siccibacter turicensis

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus thuringiensis

ncbi_strain_identifiers: AATZO

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22787;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Streptomyces nogalater

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolate: AOP5_A1_surf _bin _11

ncbi_organism_name: Glutamicibacter arilaitensis

ncbi_strain_identifiers: AOP5_A1_surf _bin _11

ncbi_submitter: Genoscope


ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: Technical University of Denmark


ncbi_country: Atlantic Ocean:Lost City Hydrothermal Field

ncbi_isolation_source: Lost City biofilm

ncbi_organism_name: Proteobacteria bacterium UBA652

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA652


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Pannonibacter sp. Pt2-lr

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Xylanibacter rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Campylobacter curvus

ncbi_submitter: EMG


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_submitter: Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: China Agricultural University


ncbi_assembly_name: Salmonella enterica CVM N47712 v1.0

ncbi_country: USA: GA

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Thailand

ncbi_organism_name: Bacteroides fragilis str. A7 (UDC12-2)

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides fragilis;x__Bacteroides fragilis str. A7 (UDC12-2)


ncbi_assembly_name: Rumen uncultured genome RUG10045

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Leiden University Medical Center


ncbi_organism_name: Mycobacterium tuberculosis BTB12-305

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: India: Tamilnadu

ncbi_isolation_source: Date palm tree rhizospheric soil

ncbi_organism_name: Nocardiopsis sp. TNDT3

ncbi_submitter: National College


ncbi_isolate: AOP30_B1_surf _bin _10

ncbi_organism_name: Microbacterium gubbeenense

ncbi_strain_identifiers: AOP30_B1_surf _bin _10

ncbi_submitter: Genoscope


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Agriculture and Forestry University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Streptomyces niveus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lysobacterales bacterium


ncbi_organism_name: Acetobacter persici

ncbi_submitter: Teagasc


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Animal Science and Technology


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Halanaerobiales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Curtobacterium flaccumfaciens pv. flaccumfaciens

ncbi_submitter: Institute for Agricultural, Fisheries and Food Research (ILVO)


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_organism_name: Acinetobacter wanghuae

ncbi_submitter: Universidad de Leon


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Dialister succinatiphilus


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: Rhodothermaeota bacterium MED-G16

ncbi_submitter: Universidad Miguel Hernandez

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Rhodothermota;x__unclassified Rhodothermota;s__Rhodothermaeota bacterium MED-G16


ncbi_country: Denmark: Odense NE

ncbi_isolation_source: activated sludge from OdNE_18-Q3-R46-58

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Italy: Mediterranean Sea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiolgy


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Hungatella effluvii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Serbia

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: Argentina: Buenos Aires

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hospital de Clinicas Jose de San Martin, UBA


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Coriobacteriaceae bacterium


ncbi_country: Sweden

ncbi_submitter: Max von Pettenkofer-Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: United Kingdom

ncbi_isolate: Campylobacter

ncbi_isolation_source: Supermarket

ncbi_organism_name: Campylobacter coli

ncbi_submitter: LSHTM


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Helicobacter japonicus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_submitter: FDA Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000752


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_country: USA: St. Louis

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Connecticut

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: The Jackson Laboratory


ncbi_country: China: Zhejiang

ncbi_isolation_source: animal

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_organism_name: Gemmatimonadaceae bacterium


ncbi_country: USA

ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Western Ontario


ncbi_country: Australia: Brisbane

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Lacombe

ncbi_organism_name: Roseburia sp.

ncbi_submitter: AAFC


ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Chitinophagaceae bacterium UBA4857

ncbi_submitter: University of Queensland


ncbi_organism_name: Faucicola osloensis

ncbi_submitter: bioBiome, Inc.


ncbi_country: Sweden: Vaxholm

ncbi_isolation_source: water

ncbi_organism_name: Shewanella septentrionalis

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: WA

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of Washington


ncbi_assembly_name: Aquimarina sp. strain Aq349

ncbi_isolation_source: seawater

ncbi_organism_name: Aquimarina spinulae

ncbi_submitter: iBB-IST


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Halomonas sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Canada: Smith s Cove; Nova Scotia

ncbi_isolation_source: Clams

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Myxococcus sp. CA005

ncbi_submitter: Aberystwyth University


ncbi_country: Germany

ncbi_organism_name: Chlamydia psittaci 08DC60

ncbi_submitter: University of Maryland School of Medicine


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of East Anglia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Tunisia: Sousse

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium UBA1077

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1077


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Streptomyces griseus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Oceanospirillaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: USA: Oklahoma City; OK

ncbi_isolation_source: cervix

ncbi_organism_name: Escherichia coli

ncbi_submitter: Children's Mercy Kansas City


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Longicatena caecimuris

ncbi_submitter: University of Chicago


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: surface water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_submitter: Affiliated Hospital of Jining Medical University


ncbi_country: United Kingdom

ncbi_isolation_source: soil

ncbi_organism_name: Corallococcus sp. AB032C


ncbi_submitter: University College Cork


ncbi_isolation_source: clinical

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 53-407


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: USA: South Dakota

ncbi_isolation_source: Yates Shaft; SURF

ncbi_organism_name: Geobacillus thermoleovorans

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Microbacterium sp. MMO-159

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium


ncbi_country: Panama: Gamboa

ncbi_isolation_source: gut of ant

ncbi_organism_name: Candidatus Tokpelaia sp.

ncbi_submitter: University of Copenhagen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;x__Hyphomicrobiales incertae sedis;g__Candidatus Tokpelaia;x__unclassified Candidatus Tokpelaia;s__Candidatus Tokpelaia sp.


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: TN

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Segatella copri

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium GW2011_GWC2_31_9


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Australia: Newcastle

ncbi_organism_name: Ruminiclostridium sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Anoxybacillus kestanbolensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: University of Parma


ncbi_organism_name: Leucobacter aridicollis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Yuandadu Park

ncbi_isolation_source: sediment

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium YD0425bin51


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Synergistaceae bacterium UBA5240


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Balneolaceae bacterium UBA2670

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;x__unclassified Balneolaceae;s__Balneolaceae bacterium UBA2670


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Heidelberg University Hospital


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: northwestern Lake Huron

ncbi_isolation_source: purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink holes collected from 2007 through 2012

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Metabacillus litoralis

ncbi_submitter: Jet Propulsion Laboratory


ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Segatella baroniae C21a


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point A

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Jacksoniibacteriota;s__Candidatus Jacksonbacteria bacterium RIFOXYA2_FULL_44_7


ncbi_country: Netherlands

ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Pseudomonas salomonii

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: Segatella copri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Thailand: Nakhon Pathom

ncbi_isolation_source: fermented pork (Nham-moo)

ncbi_organism_name: Enterococcus avium

ncbi_submitter: King Mongkut University of Technology Thonburi


ncbi_country: USA: California; Castaic Lake

ncbi_isolation_source: non-axenic enrichment culture inoculated with lake water

ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: University of Southern California


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Zurich


ncbi_organism_name: Turicimonas muris


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_isolation_source: bile

ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Enterococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Fastidiosipila sp.

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: Infection

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University


ncbi_organism_name: Muribaculum intestinale


ncbi_country: China: Shandong

ncbi_isolation_source: Brain tissue of dead ducks

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: liaocheng university


ncbi_organism_name: Methylotenera sp.

ncbi_submitter: EPFL


ncbi_country: New Zealand

ncbi_isolation_source: meat and bonemeal; lamb-based

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee;x__Salmonella enterica subsp. enterica serovar Tennessee str. TXSC_TXSC08-21


ncbi_organism_name: Escherichia coli E101

ncbi_submitter: Broad Institute


ncbi_country: Thailand: Ubon

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: China: Tsinghua University

ncbi_isolation_source: Ascites

ncbi_submitter: Tsinghua University


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: PA

ncbi_isolation_source: urethral discharge

ncbi_organism_name: Shigella flexneri

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: swine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Henan Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: Clostridium botulinum

ncbi_strain_identifiers: Prevot Ped 4


ncbi_country: China: Tianjin

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Tianjin Agricultural University


ncbi_organism_name: Arcanobacterium haemolyticum

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Providencia alcalifaciens

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: South Korea:Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Yonsei University


ncbi_isolation_source: stool

ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


ncbi_organism_name: Pumilibacteraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Escherichia coli

ncbi_submitter: Medicine / Division of Infectious Diseases, University of North Carolina


ncbi_organism_name: Dermacoccus nishinomiyaensis

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 237


ncbi_country: South Africa:Cape Town

ncbi_isolation_source: sputum


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 120 (4-6978681)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 120 (4-6978681)


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Nepal

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: CIRAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: USA: Georgia

ncbi_isolation_source: trachea

ncbi_organism_name: Mycoplasmoides gallisepticum

ncbi_submitter: University of Georgia


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Nares swab

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: France: Auvergne

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: spleen mouse (Mus musculus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: uncultured Psychroserpens sp.

ncbi_submitter: marine college, shandong university


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Monash University


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: hospital wastewater

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces antibioticus

ncbi_strain_identifiers: NRRL B-2032

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: China: Zhejiang

ncbi_submitter: Xiaoshan No.3 People's Hospital


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: New Zealand

ncbi_isolation_source: plant

ncbi_organism_name: Pseudomonas amygdali pv. morsprunorum

ncbi_submitter: New Zealand Institute for Plant & Food research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. morsprunorum


ncbi_organism_name: Achromobacter sp.

ncbi_submitter: University of Western Australia


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Ilumatobacter sp.

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: caecum

ncbi_organism_name: Faecalibacterium sp. An58

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Singapore

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: Singapore General Hospital


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Denmark: North Jutland

ncbi_isolation_source: Biopsy

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho university


ncbi_country: South Africa: Cape Town; Upper Campus of University of Cape Town

ncbi_isolation_source: Soil

ncbi_organism_name: Kribbella capetownensis

ncbi_submitter: University of Cape Town


ncbi_organism_name: FCB group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__unclassified FCB group;s__FCB group bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Firmicutes bacterium UBA4976

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA4976


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EBI


ncbi_organism_name: Lonepinella sp. BR2930

ncbi_submitter: The University of Queensland


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Zurich


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Yersinia enterocolitica


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SRM Institute of Science and Technology


ncbi_organism_name: Blautia wexlerae


ncbi_organism_name: Salmonella sp. ZJHZ19_0069

ncbi_submitter: Zhejiang university


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: Succinivibrionaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: Superficieibacter sp. BNK-5

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: Salmonella sp. NW768

ncbi_submitter: Sichuan University


ncbi_submitter: MRSN BI Team


ncbi_organism_name: Alistipes dispar


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Nitrospirota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__environmental samples;s__uncultured Nitrospirota bacterium


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Rutgers University


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: Nimes University Hospital


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: food production metagenome


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of East Anglia


ncbi_country: South Korea

ncbi_isolation_source: Environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: Seoul National University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus parasuis


ncbi_country: Peru

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Switzerland

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Fribourg


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_submitter: University of Galway


ncbi_country: Brazil:Prio Grande do Sul; Porto Alegre

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Australia: Monaro; NSW

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Qinghai-Tibet Plateau

ncbi_isolation_source: alpine soil

ncbi_organism_name: Rhodococcus tibetensis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 203

ncbi_organism_name: Staphylococcus simulans

ncbi_strain_identifiers: SNUC 3770

ncbi_submitter: University of Calgary


ncbi_country: China

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Jiangsu; Nanjing

ncbi_isolation_source: Skin tissue

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Spain: Valencia

ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: FISABIO


ncbi_assembly_name: P. tepida_PCC9214

ncbi_organism_name: Planktothrix tepida

ncbi_submitter: Justus Liebig Universitat


ncbi_isolation_source: Blood culture of burn human patient

ncbi_submitter: The Forsyth Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: International Space Station

ncbi_isolation_source: Nomex 6

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Florida

ncbi_isolation_source: leaf from field isolate

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: China: Wuhan

ncbi_isolation_source: anal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_assembly_name: Salmonella enterica CVM N51312 v1.0

ncbi_country: USA: PA

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_country: USA: Tennessee

ncbi_isolation_source: root

ncbi_organism_name: Novosphingobium sp. AP12

ncbi_submitter: Oak Ridge National Lab


ncbi_country: Denmark

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hvidovre Hospital - University of Copenhagen


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Brevibacterium sp. ACRRH

ncbi_strain_identifiers: ACRRH

ncbi_submitter: NHGRI/NIH


ncbi_country: South Korea

ncbi_isolation_source: Pollen

ncbi_organism_name: Streptomyces sp. KPB2

ncbi_submitter: Gyeongsang national university


ncbi_country: Pacific Ocean: Lau Basin

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_country: USA: San Francisco

ncbi_isolation_source: blood

ncbi_submitter: Santa Clara University


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Rhodovulum steppense

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Rhodosalinus sp. K401

ncbi_submitter: Shandong Uniwersity at Weihai


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium phoceensis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Bolivia

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Florence


ncbi_isolation_source: lung

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Danish Veterinary Consortium and AniCon


ncbi_organism_name: Gallionella sp.

ncbi_submitter: Zhejiang University


ncbi_country: India: West Bengal; Gangasagar

ncbi_isolation_source: Estuarine sediment

ncbi_organism_name: Halarcobacter anaerophilus

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: China: Bohai Sea

ncbi_isolation_source: 28-30 cm sediment from station M3 in the Bohai Sea

ncbi_organism_name: bacterium

ncbi_submitter: Shandong University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangzhou

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: GUANGZHOU CDC,China


ncbi_country: China:Guangzhou city

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Chinese Academy of Fishery Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Reunion

ncbi_isolation_source: citrus leaf

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: cirad


ncbi_country: Hungary: Balatonboglar

ncbi_isolation_source: Merlot grape gall

ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: Deakin University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1085

ncbi_submitter: Broad Institute


ncbi_organism_name: Wenzhouxiangellaceae bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_country: USA: St. Louis; Missori

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Washington University


ncbi_organism_name: Streptococcus pneumoniae SPN072838

ncbi_submitter: Wellcome Trust Sanger Institute


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Candidatus Obscuribacterales bacterium

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;x__unclassified Candidatus Obscuribacterales;s__Candidatus Obscuribacterales bacterium


ncbi_country: USA: FL

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium GW2011_GWC1_45_18


ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Canada: Guelph

ncbi_isolation_source: Wastewater treatment plant

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Canadian Research Institute for Food Safety


ncbi_isolation_source: Floor of Campus transit station

ncbi_organism_name: Streptomyces sp. PBH53

ncbi_submitter: University Of Ottawa


ncbi_organism_name: Sedimentibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp.


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Tanzania: Dar es Salaam

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bergen


ncbi_country: Germany: Dresden

ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: Vibrio metoecus

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Anderseniella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA

ncbi_isolation_source: water: water; running

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Meeske Lab - University of Washington