ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Maribacter sp. UBA1493

ncbi_submitter: University of Queensland


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_genome_representation: full

ncbi_organism_name: Blautia obeum

ncbi_submitter: Washington University in St. Louis


ncbi_assembly_level: Scaffold

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Icahn School of Medicine


ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: human gut

ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: t

ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Russia: Moscow

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Japan

ncbi_isolation_source: feces; 1 single-cell amplified by MDA combined with human gut metagenome reads

ncbi_submitter: bioBiome, Inc.


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Potato with the soft rot symptoms

ncbi_organism_name: Pectobacterium versatile

ncbi_submitter: Phytoengineering R&D Centre, LLC


ncbi_organism_name: Yersinia similis

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Spain

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: FOI Swedish Defence Research Agency


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_submitter: University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: marine

ncbi_organism_name: Flavobacteriales bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Atlantic Ocean:Mid Cayman Rise

ncbi_isolation_source: ocean water at depth 4950m

ncbi_organism_name: Sphingobium xenophagum

ncbi_submitter: University of Queensland


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Jyvaskyla


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Germany

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: SurvCARE


ncbi_country: Lebanon

ncbi_submitter: ANSES


ncbi_country: Australia

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter lari

ncbi_submitter: Microbiological Diagnostic Unit Public Health Laboratory


ncbi_country: China: Tianjin

ncbi_isolation_source: fermented milk

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Tianjin University of Science & Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Fibrobacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Phosphoribacter baldrii

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Marinomonas gallaica

ncbi_submitter: Bivalve Hatchery Health Consortium


ncbi_organism_name: Aeromonas enteropelogenes

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: uncultured Candidatus Caccenecus sp.

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__Bacilli incertae sedis;g__Candidatus Caccenecus;x__environmental samples;s__uncultured Candidatus Caccenecus sp.


ncbi_organism_name: uncultured Rhodocyclaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: KAMDHENU UNIVERSITY


ncbi_organism_name: Alistipes inops


ncbi_organism_name: Streptomyces europaeiscabiei

ncbi_submitter: Inner Mongolia Potato Engineering & Technology Research Center


ncbi_organism_name: Streptomyces sp. NPDC059466

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp. NPDC058595


ncbi_organism_name: Blautia caecimuris

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: uncultured Planctomycetales bacterium


ncbi_organism_name: uncultured Chitinophagaceae bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


gtdb_type_species_of_genus: t

ncbi_organism_name: Promicromonospora citrea

ncbi_refseq_category: reference genome

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Arsenophonus endosymbiont of Dermacentor nuttalli

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-02612

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Food and Drug Administration


ncbi_country: Peru

ncbi_isolation_source: Clinic

ncbi_submitter: INS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Thermoanaerobacter sp.

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: Rumen uncultured genome RUG10666

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: CHU Arnaud de Villeneuve Montpellier


ncbi_isolation_source: honey

ncbi_organism_name: Oceanobacillus oncorhynchi subsp. incaldanensis

ncbi_submitter: National Agriculture and Food Research Organization


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_organism_name: bacterium 1xD42-87

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: soils from a Pacific Island

ncbi_organism_name: Streptomyces bikiniensis

ncbi_strain_identifiers: NRRL B-1049

ncbi_submitter: University of Illinois


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: surficial creek

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_country: USA: Nashville; Tennessee

ncbi_isolation_source: Healthy infant urine

ncbi_organism_name: Actinotignum schaalii

ncbi_submitter: Vanderbilt University Medical Center


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Schwartzia sp. (in: firmicutes)

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Schwartzia;x__unclassified Schwartzia (in: firmicutes);s__Schwartzia sp. (in: firmicutes)


ncbi_country: India: Uttar Pradesh

ncbi_isolation_source: milk

ncbi_organism_name: Escherichia coli

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Chromosome

ncbi_organism_name: Nocardia yunnanensis

ncbi_strain_identifiers: CFH S0054

ncbi_submitter: Henan Normal University


ncbi_isolation_source: microbial mat

ncbi_organism_name: Synechococcales cyanobacterium PMM_0073

ncbi_submitter: University of Liege


ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_assembly_name: freshwater MAG --- Ki2-D3_bin-1385

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Italy: Venice Lagoon

ncbi_isolation_source: marine sediment

ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: National Institute of Oceanography and Applied Geophysics - OGS


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: Rumen uncultured genome RUG681

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China

ncbi_isolation_source: gut microbiota

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Shenzhen Puensum Genetech Institute


ncbi_country: United Kingdom:Wales


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Kosakonia cowanii

ncbi_submitter: North Carolina State University


ncbi_isolation_source: pickled cabbage

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: CIRM-BIA 2109

ncbi_submitter: Brigham Young University


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Beijing

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Beijing Ditan Hospital, Capital Medical University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Dermabacter sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0992

ncbi_submitter: Broad Institute


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate ramp bioreactor

ncbi_organism_name: Sphingobacteriales bacterium 44-15


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Rutgers University


ncbi_country: China: Liaoning

ncbi_isolation_source: Farm

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: Switzerland

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_country: New Zealand: Dunedin

ncbi_isolation_source: cystic fibrosis patient

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: uncultured Rhodobiaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG12802

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Paenibacillus sp. FSL L8-0463

ncbi_submitter: Penn State


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_strain_identifiers: HLV

ncbi_submitter: Ocean University of China


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: South Korea: Seoul

ncbi_isolation_source: wastewater plant

ncbi_organism_name: Niabella defluvii

ncbi_submitter: Korea university


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_organism_name: Bacteroidota bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia

ncbi_isolation_source: Nasal lavage

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_country: China: Shanghai

ncbi_isolation_source: patient

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Municipal Center for Disease Control and Prevention


ncbi_country: China: Shandong

ncbi_isolation_source: hospital

ncbi_submitter: Affiliated Hospital of Jining Medical University


ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_country: Germany

ncbi_isolation_source: environmental swab sponge powder infant formula manufacturing facility

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Health Canada


ncbi_country: United Kingdom: Liverpool

ncbi_isolation_source: aerobic blood culture bottle

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Liverpool School of Tropical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: CO

ncbi_isolation_source: roasted beef

ncbi_organism_name: Listeria monocytogenes


ncbi_isolation_source: homo

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: United Kingdom

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Research Center of Avian Diseases, RCAD


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Colombia: Medellin

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Alianza científico - tecnológica Nucleosensor-TB


ncbi_isolate: AOP33_4_coeur _bin _5

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_strain_identifiers: AOP33_4_coeur _bin _5

ncbi_submitter: Genoscope


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Plum Island; MA

ncbi_isolation_source: Filtered seawater (64 uM filter)

ncbi_organism_name: Vibrio sp. ZF 223

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__unclassified Vibrio;s__Vibrio sp. ZF 223


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22795;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: USA

ncbi_isolation_source: cecum

ncbi_organism_name: Helicobacter sp. MIT 05-5293

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: Variovorax boronicumulans

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: India: Bhubaneswar

ncbi_isolation_source: eye

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Institute of Life Sciences


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: Japan:Izu-Ogasawara Arc

ncbi_isolation_source: mineral material

ncbi_organism_name: Mariprofundus micogutta

ncbi_submitter: Chemosymbiosis system genomics Team, Extremobiosphere Research Program, Institute of Biogeosciences, Japan Agency for Marine-Earth Science and Technology


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_organism_name: Longimicrobiales bacterium


ncbi_country: Brazil: Maringa

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_country: China: Nanchang; Jiangxi Province

ncbi_isolation_source: Soil

ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal Fluminense


ncbi_isolation_source: stool

ncbi_organism_name: Anaerotruncus rubiinfantis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: Quadram Institutte


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus durans


ncbi_organism_name: Sediminicola sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI


ncbi_assembly_name: freshwater MAG --- Loc081215-9m_bin-1979

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Microbacteriaceae bacterium

ncbi_submitter: BILS


ncbi_country: Italy: Milan

ncbi_isolation_source: Prosthesis

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: IRCCS Ospedale Galeazzi - Sant'Ambrogio


ncbi_organism_name: Ramlibacter sp.

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_country: Japan: Nagano Prefecture; Hakuba-Himekawa

ncbi_isolation_source: water from drilled well

ncbi_organism_name: Meiothermus hypogaeus

ncbi_submitter: Biocant


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_country: Ireland

ncbi_isolation_source: broiler caeca

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Tissues

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Norway: Viken

ncbi_isolation_source: feces

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Norwegian University of Life Sciences


ncbi_organism_name: Parvibacter caecicola


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_strain_identifiers: KPC-Tunisia

ncbi_submitter: UR12SP37 Laboratoire de Microbiologie Sahloul


ncbi_country: Australia: Sydney; Freshwater Beach

ncbi_isolation_source: Sea water

ncbi_organism_name: Synechococcus sp. HB1133

ncbi_submitter: Macquarie University


ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: Sil CS 3

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Oral

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: King's College London


ncbi_country: China

ncbi_isolation_source: mesophilic anaerobic digestion

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Streptococcus alactolyticus

ncbi_submitter: Veterinary Research Institute


ncbi_country: France: Lille

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Institut Pasteur


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Chile: San Vicente

ncbi_isolation_source: Macerated buds

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: INIA Rayentue

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_country: Brazil: Tatui

ncbi_isolation_source: Cecum and rectal contents from Capybaras

ncbi_organism_name: Malacoplasma sp.

ncbi_submitter: Brazilian Center for Research in Energy and Materials (CNPEM)


ncbi_assembly_name: IMG-taxon 2617270905 annotated assembly

ncbi_organism_name: Celeribacter halophilus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides sp. AM16-13

ncbi_submitter: BGI


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Ambient sewage

ncbi_organism_name: Salmonella enterica


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Harvard University


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: India

ncbi_isolation_source: fermented soyabean from sikkim

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: CSIR-CFTRI Mysore


ncbi_organism_name: Microbacterium sp. NPDC058062

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Romania

ncbi_isolation_source: sediment

ncbi_organism_name: Pseudomonas veronii

ncbi_strain_identifiers: Pvy

ncbi_submitter: Institute of Molecular Genetics of the ASCR v.v.i.


ncbi_country: Canada: Alberta

ncbi_isolation_source: Culture Media

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_isolation_source: broiler carcass

ncbi_organism_name: Morganella morganii

ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: freshwater

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cellulomonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Dekas Lab, Stanford University


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: RWTH Aachen University Hospital


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 317

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_strain_identifiers: SNUC 1353

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: porpoise

ncbi_organism_name: Erysipelothrix rhusiopathiae

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Borrelia coriaceae ATCC 43381

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Leptotrichia sp.


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: Whole tissue homogenate

ncbi_organism_name: Enterococcus ureasiticus

ncbi_submitter: Broad Institute


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Ningbo University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Dialister hominis


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Parasutterella sp.


ncbi_submitter: Jilin Agricultural University


ncbi_organism_name: uncultured Rhodocyclaceae bacterium


ncbi_organism_name: uncultured Brevundimonas sp.


ncbi_organism_name: Akkermansia sp.


ncbi_organism_name: Enterobacter sp. CPE_E423

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: uncultured Bauldia sp.


ncbi_organism_name: Salmonella sp. NW169

ncbi_submitter: Sichuan University


ncbi_organism_name: Candidatus Saccharimonas aalborgensis

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__Candidatus Saccharimonas aalborgensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__Candidatus Saccharimonas aalborgensis


ncbi_organism_name: Alistipes finegoldii


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Tokyo


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiales bacterium KLE1615

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Antarctica: Eastern Antarctica; McMurdo Dry Valleys

ncbi_isolate: MDV bin44

ncbi_isolation_source: soil

ncbi_organism_name: bacterium

ncbi_strain_identifiers: MDV bin44

ncbi_submitter: Monash University


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Liaocheng University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: SC


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp7 AA5

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp7 AA5

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: China: Hunan; Shuikoushan

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Russia

ncbi_isolation_source: marine hot spring

ncbi_organism_name: Sphaerochaeta globosa str. Buddy

ncbi_strain_identifiers: Buddy

ncbi_submitter: US DOE Joint Genome Institute


ncbi_organism_name: Chloroflexota bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: URINE

ncbi_organism_name: Escherichia coli BIDMC 79

ncbi_strain_identifiers: BIDMC 79

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Anaerotruncus colihominis

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Regensburg


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_submitter: Stockholm University


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: USA: California

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: USDA-ARS


ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. Bc065

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. Bc065


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Palmer LTER


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: Xinjiang Academy of Agriculture Science


ncbi_country: China: Shanghai

ncbi_isolation_source: kimchi

ncbi_organism_name: Enterococcus durans

ncbi_submitter: Shanghai ocean university


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Agriculture and Forestry University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France

ncbi_isolation_source: raw cow milk (organic producers)

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: CIRM-BIA 288

ncbi_submitter: Brigham Young University


ncbi_isolation_source: anammox reactor granules

ncbi_organism_name: Caldilineales bacterium

ncbi_submitter: Biological Research Institute "Clemente Estable"


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Truepera sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Tift Co. GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bacillus mobilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Smithella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: AR

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_country: South Korea: Seoul

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: EFA 25

ncbi_submitter: Yonsei Medical Center


ncbi_country: USA

ncbi_isolation_source: BLOOD


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: Toho University


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond E1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Montreal

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Chlamydia ibidis 10-1398/6

ncbi_submitter: Institute for Genome Sciences, University of Maryland School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;x__Chlamydia/Chlamydophila group;g__Chlamydia;s__Chlamydia ibidis;x__Chlamydia ibidis 10-1398/6


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_organism_name: Brucella abortus 90-12178

ncbi_submitter: Broad Institute


ncbi_organism_name: Gemmatimonadales bacterium


ncbi_country: China: NanChang

ncbi_isolation_source: Whole chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Wuhan Polytechnic University


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: National University of Singapore


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides salyersiae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Nimes University Hospital


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: India

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_country: India: Chandigarh

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Thalassoporum mexicanum PCC 7367

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Puerto Rico

ncbi_isolation_source: soil

ncbi_organism_name: Leptospira mtsangambouensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Australia: near Lamington National Park; Queensland

ncbi_isolation_source: termite gut

ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: University of Parma


ncbi_country: China: Gansu

ncbi_isolation_source: petroleum-contaminated soil

ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: Lanzhou university of technology


ncbi_organism_name: Shigella flexneri

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Biochemistry and Biophysics of the Polish Academy of Sciences


ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0271

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Germany

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Norddeutsches Zentrum für Mikrobielle Genomforschung


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Lujinxingiaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Sweden: Kalmar

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: Aarhus University Hospital, Denmark


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Actinoplanes couchii

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Geodermatophilaceae bacterium

ncbi_submitter: Monash University


ncbi_country: USA: Detroit; MI

ncbi_isolation_source: vaginal swab

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: University of Maine


ncbi_organism_name: Candidatus Zhuqueibacterota bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;x__unclassified Candidatus Zhuqueibacterota;s__Candidatus Zhuqueibacterota bacterium


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Jonesia denitrificans


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Tehran


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: North Dakota; Cottonwood Lake Study Area

ncbi_isolation_source: Prairie Pothole Region wetland sediments

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_country: South Korea

ncbi_isolation_source: stool

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Hallym University


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_country: USA: San Francisco

ncbi_isolation_source: feces on street

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Ruthenibacterium sp.


ncbi_country: USA: Idaho

ncbi_isolation_source: freshwater surface biofilm

ncbi_organism_name: Aeromonas popoffii

ncbi_submitter: University of Connecticut Graf Lab


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: WA

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Washington


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Slovakia: Lehota pod Vtacnikom

ncbi_isolation_source: milk

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Faculty of Natural Sciences, Comenius University in Bratislava


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: Joint Institute for Nuclear Research


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis


ncbi_country: United Kingdom: Sparsholt; Hampshire

ncbi_isolation_source: porcine fecal sample

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Quadram Institute BioScience


ncbi_organism_name: Streptomyces goshikiensis

ncbi_submitter: Technical University of Denmark


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4571_4 depth 12-15 cm

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: EMG


ncbi_organism_name: Gaiellaceae bacterium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Candidatus Phytoplasma australasiaticum

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum


ncbi_country: Saudi Arabia: Riyadh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University College Dublin


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculdade de Farmcia da Universidade de Lisboa, Lisbon, Portugal


ncbi_country: Switzerland

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_country: China: Shandong

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou University


ncbi_country: China: Qingdao

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: USA

ncbi_submitter: CDC Prevention Epicenter Program


ncbi_country: Spain: Seville

ncbi_isolation_source: Wond

ncbi_submitter: Hospital Virgen Macarena


ncbi_country: USA: New Hampshire Seacoast; Odiorne Point State Park

ncbi_isolation_source: Aristotles Lantern

ncbi_organism_name: Pseudoalteromonas arctica

ncbi_submitter: New England College


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Universidad de las Americas


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Huashan Hospital


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: University of California, Los Angeles


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: SC


ncbi_isolate: Fecal samples

ncbi_isolation_source: ALLERGYFLORA birth-cohort

ncbi_strain_identifiers: Fecal samples

ncbi_submitter: UMR 1137 IAME


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Yersinia pestis PY-10

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Taiwan

ncbi_organism_name: Sphingomicrobium lutaoense

ncbi_submitter: Second Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: Egypt

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Ireland

ncbi_submitter: University College Dublin


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia schinkii

ncbi_submitter: University of Chicago


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_organism_name: Mitsuokella jalaludinii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Staphylococcus sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Marinobacter salarius

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Phalera bucephala


ncbi_country: China: Nanning City; Guangxi Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: SCAU


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Fusobacterium gonidiaformans 3-1-5R

ncbi_submitter: Broad Institute


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: University of Montreal


ncbi_organism_name: uncultured Bergeyella sp.

ncbi_submitter: EMG


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_submitter: Quadram Institutte

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Candidatus Copromonas (nom. illeg.);s__Candidatus Copromonas faecavium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Candidatus Copromonas (nom. illeg.);s__Candidatus Copromonas faecavium (nom. illeg.)


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Ausgem


ncbi_country: China: Yangzhou

ncbi_isolation_source: intestinal contents

ncbi_submitter: YangZhou university


ncbi_organism_name: Escherichia coli O55:H7

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejianglab


ncbi_country: French Guiana: Petit Saut

ncbi_isolation_source: termite gut

ncbi_organism_name: Candidatus Fibrimonadaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;c__Fibrobacteria;o__Candidatus Fibrimonadales;f__Candidatus Fibrimonadaceae;s__Candidatus Fibrimonadaceae bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Australia: Melbourne

ncbi_isolation_source: bronchoalveolar lavage of child cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: USDA-ARS-USNPRC


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bifidobacterium pseudolongum


ncbi_country: USA

ncbi_isolation_source: tomato fruit

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: The Ohio State University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: China

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Chthonomonadaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Zhejiang provincial center for disease control and prevention


ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: NAC SLCC MFF

ncbi_submitter: INRA


ncbi_organism_name: Kaistella sp.

ncbi_submitter: CLUE-TERRA


ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 2025EL-00065


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Spirosomataceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_submitter: Chinese Academy of Agricultural Sciences (CAAS)


ncbi_organism_name: uncultured Granulosicoccaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Stenotrophomonas bentonitica

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Humidisolicoccus flavus

ncbi_submitter: Chungnam National University


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID 3995

ncbi_submitter: University Hospital Regensburg


ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: uncultured Atopobium sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite de Limoges


ncbi_organism_name: uncultured Planctomycetales bacterium


ncbi_organism_name: uncultured Acidobacterium sp.


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Abuja


ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: uncultured Iamiaceae bacterium


ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_organism_name: Anaerofustis stercorihominis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Wits University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Polyangiaceae bacterium LLY-WYZ-14_1

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: University of Arkansas Poultry Research Farm

ncbi_isolation_source: lame broiler

ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: UNIVERSITY OF ARKANSAS


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Auckland


ncbi_assembly_name: Rumen uncultured genome RUG14318

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Sutterellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Texas

ncbi_isolation_source: Subiliac Lymph Node

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_isolation_source: stool sample

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Tennessee

ncbi_isolation_source: Rectal

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_country: France

ncbi_isolation_source: Bovine adult

ncbi_submitter: University College Dublin


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: mine service water

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: Northwestern University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: freshwater MAG --- AM5_bin-0928

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Firestoneibacteriota;x__unclassified Candidatus Firestoneibacteriota;s__Candidatus Firestoneibacteriota bacterium


ncbi_country: Brazil: Blumenau

ncbi_submitter: LNCC


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: SPRUCE 181

ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_strain_identifiers: SPRUCE 181


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: mBioClim


ncbi_country: India

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Kenya: Kilifi

ncbi_isolation_source: skin soft tissue

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Kenya Medical Research Institute - United States Army Medical Research Directorate Kenya


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rock nearby Barbacenia macrantha specimens

ncbi_organism_name: Ktedonobacteraceae bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Silicimonas sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Surrey


ncbi_country: Spain: Valencia

ncbi_isolation_source: healthy animal

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Valencia


ncbi_country: Italy

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus OCMM6065

ncbi_submitter: Broad Institute


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Aeromonas enteropelogenes

ncbi_submitter: Hiroshima University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Germany: foodproduct with ingredients from different origins

ncbi_isolation_source: food

ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01522

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01522


ncbi_country: Sudan

ncbi_submitter: University of Khartoum


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_country: China: Beijing

ncbi_isolation_source: Cereal-based food (noodle) for infant

ncbi_organism_name: Cronobacter dublinensis

ncbi_strain_identifiers: CFSA A84

ncbi_submitter: China National Centre for Food Safety Risk Assessment


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Glaciihabitans sp.

ncbi_submitter: Colorado State University


ncbi_country: USA: midwestern states

ncbi_isolation_source: root/leaf

ncbi_organism_name: Arthrobacter sp. fls2-241-R2A-200

ncbi_submitter: University of Chicago


ncbi_isolation_source: Parotid gland

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: Blood


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA:New York City

ncbi_isolation_source: plastic

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Queensland


ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Oceanospirillales bacterium

ncbi_submitter: Queen Mary University of London


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: addis ababa university


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Mexico

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: INSTITUTO POLITECNICO NACIONAL


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: IHU - Mediterranee Infection


ncbi_country: Brazil:Sao Paulo; Sao Paulo

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Texas; Corpus Christi

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio rotiferianus

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GNS Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Australia: QLD5

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: University of queensland


ncbi_country: Israel

ncbi_organism_name: Leucobacter chironomi DSM 19883

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: China

ncbi_isolation_source: library

ncbi_organism_name: Mycolicibacterium smegmatis

ncbi_submitter: Shenzhen University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WRAIR-Africa


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Human feces

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: Italy

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 2393-19

ncbi_submitter: Broad Institute


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Faecalimonas umbilicata


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Neisseria dentiae

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Brazil

ncbi_isolation_source: black pepper power

ncbi_strain_identifiers: BGSC 4AY1

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar brasilensis


ncbi_country: China: Anhui

ncbi_isolation_source: physical

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University,Shanghai, China


ncbi_organism_name: Nocardia sp. NPDC019302

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Brazil: Bela Vista do Paraiso/PR

ncbi_isolation_source: soil from soybean field

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: State University of Londrina


ncbi_country: China: Liaoning

ncbi_isolation_source: soil

ncbi_organism_name: Kocuria soli

ncbi_submitter: Research Center for Medicine & Biology


ncbi_country: China: Yunnan

ncbi_isolation_source: tobacco leaves

ncbi_organism_name: Pseudomonas cichorii

ncbi_submitter: Yunnan Academy of Tobacco Agriculture Science


ncbi_country: China: Nantong; Jiangsu province

ncbi_isolation_source: carcass

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: Canada

ncbi_isolation_source: Imported/domestic retail Mussels

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Health Canada


ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Ithaca(NY)

ncbi_organism_name: Stenotrophomonas indicatrix

ncbi_submitter: Cornell University


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Texas at Austin


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Daviesiibacteriota;s__Candidatus Daviesbacteria bacterium RIFCSPLOWO2_01_FULL_40_27


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alcanivorax sp. UBA2509

ncbi_submitter: University of Queensland


ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterobacter sp. BWH 37

ncbi_strain_identifiers: BWH 37

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter sp. BWH 37


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: stool sample

ncbi_submitter: Public Health Agency of Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni 00-2538


ncbi_isolation_source: gastric fluid

ncbi_organism_name: Helicobacter cetorum

ncbi_submitter: University of Antwerp, Belgium


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: Lapillicoccus sp.

ncbi_submitter: Monash University


ncbi_country: Sweden

ncbi_organism_name: Escherichia coli T234_00

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Tanzania

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Pseudanabaena sp. M179S2SP2A07QC

ncbi_submitter: Universite de Montreal


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW301-21D1A

ncbi_submitter: Arkin Lab


ncbi_country: China: Haidian; Beijing

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Institute of Agro-products Processing Science and Technology, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Ghana: Korle Bu

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Noguchi Memorial Institute for Medical Research, University of Ghana


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei


ncbi_country: Lebanon

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: LAU


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Paracoccus sp. UBA6566

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. UBA6566


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_submitter: LNCC


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef seawater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: James Cook University


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptomyces virginiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Texas Tech University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: NC

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: EBI


ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: uncultured Peptoniphilus sp.


ncbi_country: Denmark: Capital Region of Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Slagelse Hospital


ncbi_country: Japan

ncbi_isolation_source: drain tip

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Toho university


ncbi_country: USA: Texas

ncbi_isolation_source: Endocarditis

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: The University of Texas at Dallas


ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Japan:Nigata; Sado Island; Sea of Japan

ncbi_isolation_source: marine sediment of the Sea of Japan

ncbi_organism_name: Vallitalea longa

ncbi_submitter: Tokyo University of Marine Science and Technology


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Streptomyces lydicus


ncbi_organism_name: Raoultella sp. XY-1

ncbi_submitter: central south university


ncbi_country: China: Fujian

ncbi_organism_name: Shewanella acanthi

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: USA

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Brazil: Maringa

ncbi_isolation_source: urine

ncbi_submitter: University of Sao Paulo


ncbi_country: USA: FL

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: JCVI


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmata obscuriglobus

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Sediment

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UOL


ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: the seqafrica consortium


ncbi_assembly_name: freshwater MAG --- Day2-1_bin-359

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Pseudomonas sp. QD4

ncbi_submitter: University of British Columbia


ncbi_isolation_source: honey

ncbi_organism_name: Paenibacillus cineris

ncbi_submitter: National Agriculture and Food Research Organization


ncbi_country: Netherlands: Utrecht

ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Utrecht University


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: China: Mianyang

ncbi_isolation_source: mud

ncbi_organism_name: Acholeplasmataceae bacterium UBA5468

ncbi_submitter: University of Queensland


ncbi_organism_name: Shigella flexneri

ncbi_submitter: WRAIR-Africa


ncbi_organism_name: Paraburkholderia humisilvae

ncbi_strain_identifiers: NCAIM B.02543

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_country: Canada: Red Deer

ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Canada: Lacombe

ncbi_organism_name: Fusobacterium mortiferum

ncbi_submitter: AAFC


ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Linnaeus University


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Priestia megaterium

ncbi_submitter: NJAU


ncbi_organism_name: Gallionella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The Second Affiliated Hospital & Yuying Children's Hospital of Wenzhou Medical University


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: uncultured Trueperaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Cheng Kung University Hospital


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: KAUST


ncbi_isolate: SPRUCE 293

ncbi_organism_name: Terracidiphilus sp.

ncbi_strain_identifiers: SPRUCE 293

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Candidatus Nanopelagicus sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Nanopelagicus;x__unclassified Candidatus Nanopelagicus;s__Candidatus Nanopelagicus sp.


ncbi_organism_name: Pseudomonas monteilii

ncbi_submitter: GuangDong Academy of Agricultural Sciences


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Gemmiger qucibialis


ncbi_organism_name: Serratia sp. BNK-31-b

ncbi_submitter: National Institute of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. BNK-31-b


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Sahlgrenska University Hospital


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Colorado State University


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Actinomycetota bacterium


ncbi_organism_name: uncultured Acidimicrobiia bacterium


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Milan


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Rhizobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Pseudomonadota bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterobacter cloacae complex sp.

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp.


ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_assembly_name: freshwater MAG --- MJ120716A_bin-0562

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: Firmicutes bacterium AF22-6AC

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium AF22-6AC


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces cavourensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_isolation_source: blood

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Streptosporangiales;f__Nocardiopsidaceae;g__Nocardiopsis;s__Nocardiopsis dassonvillei;sb__Nocardiopsis dassonvillei subsp. dassonvillei;x__Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111


ncbi_country: France

ncbi_isolation_source: cheese

ncbi_organism_name: Psychrobacter sp. FME6

ncbi_submitter: INRA


ncbi_organism_name: Christensenellales bacterium


ncbi_isolation_source: feces

ncbi_organism_name: bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Placer County; CA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: California Department of Public Health


ncbi_country: Brazil: Dourados

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Arcobacter sp.

ncbi_submitter: University of Waterloo


ncbi_country: Canada

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_country: Canada: Vancouver

ncbi_isolation_source: stool of a ~10 day-old infant on Bifidus selective media agar

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Desulfovibrio subterraneus

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Alberta


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Aquitalea sp.


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Acidobacteriota bacterium


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus australis

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: USA: California

ncbi_isolation_source: activated sludge from wastewater treatment plant

ncbi_organism_name: Candidatus Competibacteraceae bacterium

ncbi_submitter: Stanford University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Candidatus Competibacteraceae bacterium


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M81424

ncbi_submitter: Broad Institute


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1929


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Weifang People's Hospital


ncbi_isolation_source: human gut

ncbi_organism_name: Ligilactobacillus ruminis


ncbi_country: China: Hubei

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: IRRI


ncbi_isolation_source: ammonia-oxidizing enrichment culture

ncbi_organism_name: bacterium HR10

ncbi_submitter: Japan Agency for Marine-Earth Science and Technology


ncbi_country: Chile

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: therapeutic muds

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Pretoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Lactimicrobium massiliense

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: South Korea: Kyeongsangbuk-do; swine farm

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chung-Ang University


ncbi_organism_name: Tissierellaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Atlanta; GA

ncbi_isolation_source: sputum

ncbi_submitter: Emory University


ncbi_country: China: Guangdong

ncbi_isolation_source: environment

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Chicago