ncbi_organism_name: Candidatus Intestinimonas stercoravium

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Intestinimonas;s__Candidatus Intestinimonas stercoravium


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


gtdb_representative: f

ncbi_assembly_level: Scaffold

ncbi_country: Italy

ncbi_isolation_source: Cooked ham

ncbi_organism_name: Leuconostoc carnosum

ncbi_submitter: Nanyang Technological University


ncbi_assembly_name: freshwater MAG --- LaPlata-5m-a_bin-663

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Nodularia sp.

ncbi_submitter: BILS


ncbi_organism_name: Serratia sarumanii

ncbi_submitter: University of Calgary


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: GenomeTrakr Project: Thakur Molecular Epidemiology Laboratory, NC State University


ncbi_country: France

ncbi_isolation_source: stool

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: CHU de Bordeaux


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Ryaniibacteriota;s__Candidatus Ryanbacteria bacterium RIFCSPHIGHO2_02_FULL_45_43


ncbi_country: China: Jiangsu

ncbi_isolation_source: rectum

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_country: China: Beijing

ncbi_isolation_source: sludge from two different bioreactors; each one run at a different temprature (R1 at 35 C; R2 at 25 C); artificial municipal wastewater

ncbi_organism_name: Haliscomenobacteraceae bacterium CHB4

ncbi_submitter: Peking University


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: surface water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Terasakiella sp.

ncbi_submitter: Lund University


ncbi_isolation_source: Drinking water treatment plant

ncbi_organism_name: Chryseobacterium potabilaquae

ncbi_refseq_category: reference genome

ncbi_submitter: UVEG

ncbi_type_material_designation: assembly from type material


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: Water column in the Pearl River Estuary

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_country: Spain: Valencia

ncbi_isolation_source: infant feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: University of Massachusetts Amherst


ncbi_assembly_name: freshwater MAG --- Umea_bin-05490

ncbi_organism_name: uncultured Chitinophagaceae bacterium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_level: Chromosome

ncbi_country: Canada: Ontario

ncbi_isolation_source: Food

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. SA20094389


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Candidatus Onthomorpha sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Onthomorpha;x__unclassified Candidatus Onthomorpha;s__Candidatus Onthomorpha sp.


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: wastewater

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: Switzerland

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_country: Kazakhstan: Almaty Region; Balkhash District; Bakanas Townsite

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague Institute 'Microbe'


ncbi_country: Argentina: Ciudad Autonoma Buenos Aires

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Miami University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: USA: Lubbock; TX

ncbi_isolation_source: indwelling urinary catheter

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: New Hampshire

ncbi_isolation_source: ascending colon brush

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: Xiamen University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: lake water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NBC_00597

ncbi_submitter: Technical University of Denmark


ncbi_submitter: EMG


ncbi_country: Russia: Moscow

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SRCAMB


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Drexel


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Kansas State University


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Corynebacterium sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: The University of Sheffield


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Shanghai

ncbi_isolation_source: Biogas digester

ncbi_organism_name: Clostridium sp. Cult1

ncbi_submitter: Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Montreal


gtdb_type_species_of_genus: t

ncbi_country: Australia

ncbi_isolation_source: Lake water

ncbi_organism_name: Tuwongella immobilis

ncbi_submitter: DEPARTMENT OF CELL AND MOLECULAR BIOLOGY, Uppsala University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces griseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Delftia lacustris

ncbi_submitter: Capital Medical University, Beijing Obstetrics and Gynecology Hospital


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SC


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Tannerellaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China

ncbi_isolation_source: In-house environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: China: Zhejiang

ncbi_isolation_source: retail chicken

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: ECBC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Zhejiang university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: Malaysia: Perak

ncbi_isolation_source: Ulu Slim Hot Spring

ncbi_submitter: University of Malaya


ncbi_country: China: Kunming

ncbi_isolation_source: feces

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Kunming University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: human

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_country: USA: IA

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: Sputum

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Limosilactobacillus ingluviei

ncbi_submitter: UNIVERSITY HOHENHEIM


ncbi_assembly_name: freshwater MAG --- Loc090721-8m_bin-650

ncbi_isolation_source: lake water

ncbi_organism_name: Synechococcus lacustris

ncbi_submitter: BILS


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Dialister sp.


ncbi_organism_name: Arthrobacter ulcerisalmonis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Fructilactobacillus fructivorans

ncbi_submitter: Shanghai Majorbio


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured Methylocystaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Columbia University Medical Center


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nitrospira sp. NS4

ncbi_submitter: Jeju National University


ncbi_country: Taiwan

ncbi_submitter: Chang Gung Memorial Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Microbiological Diagnostic Unit Public Health Laboratory


ncbi_organism_name: Streptomyces violaceusniger

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Poland: Wroclaw

ncbi_isolation_source: oropharynx

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: Wroclaw University


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Acinetobacter sp. JADD-285

ncbi_submitter: Jilin Agricultural University


ncbi_country: Germany: Erlangen

ncbi_isolation_source: perianal skin [UBERON:0012336]

ncbi_submitter: Universitaetsklinikum Erlangen


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Salinicola sp.

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_country: China: Yangzhou

ncbi_isolation_source: stray dog feces

ncbi_submitter: Yangzhou University


ncbi_isolation_source: Human gut stool

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Queensland


ncbi_country: Germany

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: Pond

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: FDA


ncbi_isolation_source: feces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus pyogenes ABC020033799

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: Cetobacterium sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: KU Leuven


ncbi_organism_name: Draconibacterium sp.

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: University of California Berkeley


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_organism_name: Rhodanobacter caeni

ncbi_submitter: Sun Yat-sen University


ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: cold seep

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_assembly_name: Rumen uncultured genome RUG10043

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: University of Parma


ncbi_organism_name: Paenarthrobacter nicotinovorans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: This work was funded by the University Paris-Sud, France. R.A.B., L.D., and T.N. are members of the Laboratory of Excellence in Research on Medication and Innovative Therapeutics (LERMIT), supported by a grant from the French National Research Agency (ANR-10-LABX-33). This work was also supported by the “PHC Utique” program of the French Ministry of Foreign Affairs, the French Ministry of Higher Education, Research and Innovation and the Tunisian Ministry of Higher Education and Scientific Research under the CMCU project number 21G0807.


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Wits University


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: Enterococcaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Saudi Arabia: Riyadh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University College Dublin


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Eubacteriaceae bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: USA: Green Canyon; Gulf of Mexico

ncbi_isolation_source: 10 Gulf of Mexico water column samples before the DWH oil spill

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: National Oceanic & Atmospheric Administration


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Mageeibacillus sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_organism_name: Blastococcus brunescens

ncbi_submitter: University of Carthage


ncbi_organism_name: Brachyspira pilosicoli

ncbi_submitter: Animal and Plant Health Agency


ncbi_country: Austria

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: AGES


ncbi_country: USA: Cambridge; Massachusetts

ncbi_isolation_source: stool

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: UCSF


ncbi_country: Russia: Novgorod

ncbi_isolation_source: spring water

ncbi_organism_name: Dethiosulfovibrio acidaminovorans

ncbi_submitter: Marquette University


ncbi_organism_name: Brevundimonas diminuta


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: IMG-taxon 2681813548 annotated assembly

ncbi_organism_name: Marinobacterium stanieri

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: fecal grab

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_isolation_source: rat gut

ncbi_organism_name: Prevotella sp. UBA3313

ncbi_submitter: University of Queensland


ncbi_organism_name: Corynebacterium macginleyi

ncbi_submitter: OsloMet


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Institute of Health, Department of Medical Sciences


ncbi_country: China: Beijing

ncbi_isolation_source: patient with infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_country: Pakistan

ncbi_isolation_source: bedside light switch in hospital intensive care unit

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Viet Nam

ncbi_isolation_source: black pepper plant rhizosphere

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: ENDOBICA


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Thermosipho sp. (in: thermotogales)

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;o__Thermotogales;f__Fervidobacteriaceae;g__Thermosipho;x__unclassified Thermosipho (in: thermotogales);s__Thermosipho sp. (in: thermotogales)


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli 4-203-08_S1_C1

ncbi_submitter: IGS


ncbi_country: USA: Central California

ncbi_isolation_source: blood sample

ncbi_organism_name: Bartonella sp. Coyote22sub2

ncbi_submitter: University of Basel


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: University of California Davis


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_organism_name: Candidatus Udaeobacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;o__Chthoniobacterales;f__Chthoniobacteraceae;g__Candidatus Udaeobacter;x__unclassified Candidatus Udaeobacter;s__Candidatus Udaeobacter sp.


ncbi_organism_name: Pseudomonas fragi

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: groin

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_submitter: SC


ncbi_country: Brazil: Batatais

ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Candidatus Pararuminococcus gallinarum

ncbi_submitter: EMG

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Pararuminococcus;s__Candidatus Pararuminococcus gallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Pararuminococcus;s__Candidatus Pararuminococcus gallinarum


ncbi_country: Canada: New Brunswick

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Streptomyces sp. TLI_235

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Univeristy of Pretoria and National Health Laboratory Services


ncbi_isolation_source: cold seep

ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: USA: Tulsa

ncbi_isolation_source: chicken liver

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Tulsa


ncbi_country: Italy

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 6665-5

ncbi_submitter: Broad Institute


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter hepaticus ATCC 51449

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_isolation_source: tundra soil

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: University of Helsinki

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: China: Yunnan

ncbi_isolation_source: Yunnan; China

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Dialister sp.


ncbi_country: Spain: Asturias

ncbi_organism_name: Micrococcaceae bacterium

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: Toho University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Pseudorhizobium flavum


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Argentina

ncbi_submitter: Universidad El Bosque


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Atopobium sp. UBA2729

ncbi_submitter: University of Queensland


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Leptolinea sp. UBA5366


ncbi_country: Indonesia

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: SC


ncbi_country: USA: NY

ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Azospirillum sp. NL1

ncbi_submitter: Thai Nguyen University of Agriculture and Forestry


ncbi_country: USA: New York

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_country: USA: Fort Sam; Houston

ncbi_isolation_source: urine

ncbi_submitter: Miami University


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Zoogloeaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Horse urine

ncbi_organism_name: Aerococcus urinaeequi

ncbi_submitter: Slagelse Hospital


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_assembly_name: freshwater MAG --- Erken-D7_bin-0754

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Roseiflexaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Ruminococcus sp. AM36-2AA

ncbi_submitter: BGI


ncbi_country: Denmark: South Greenland; Kap Hegh

ncbi_isolate: KAP bin67

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: KAP bin67

ncbi_submitter: Monash University


ncbi_country: Cuba: Parque Nacional Topes de Collantes; Sierra del Escambray

ncbi_isolation_source: termite gut

ncbi_organism_name: Candidatus Opitulatrix cubana

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Salipiger bermudensis HTCC2601

ncbi_submitter: The Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_organism_name: uncultured Hyphomicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Denmark

ncbi_isolation_source: gut

ncbi_submitter: University of Southampton


ncbi_submitter: Postgraduate Institute of Medical Education and Research


ncbi_country: United Kingdom

ncbi_isolation_source: Lung

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Rural Development Administration


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: Institute of Microbiology


ncbi_country: Spain: Ejea de los Caballeros; Zaragoza

ncbi_isolation_source: sow vagina

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Universidad de Zaragoza


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_assembly_name: freshwater MAG --- Kiruna3_bin-3061

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Australia: Orpheus Island

ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Neisseria dentiae

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Lysinibacillus sp. RC79

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Tsinghua University


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Yersinia rohdei ATCC 43380

ncbi_submitter: Naval Medical Research Center


ncbi_country: Taiwan: Lyudao

ncbi_isolation_source: green sulfur bacteria endolithic enrichment culture

ncbi_organism_name: Prosthecochloris sp.

ncbi_submitter: Academia Sinica


ncbi_isolate: verrucose

ncbi_organism_name: Microbacterium paraoxydans

ncbi_submitter: BGI Research


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Detroit; Michigan

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Gallionellaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Brazil

ncbi_isolation_source: trachea fragment

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Phytoplasma australasiaticum

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum


ncbi_organism_name: Xylanibacter rodentium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR92 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Cellvibrionales;f__Porticoccaceae;x__unclassified Porticoccaceae;x__SAR92 clade;x__environmental samples;s__uncultured SAR92 cluster bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Alistipes inops

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Mobilitalea sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Collection de l'Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater under a natural surface slick

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. CK187

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-442-M23

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: University of East Anglia


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Arsenophonus endosymbiont of Dermacentor nuttalli

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Landesbetrieb Hessisches Landeslabor (LHL)


ncbi_country: Australia

ncbi_isolation_source: snail

ncbi_organism_name: Buttiauxella noackiae ATCC 51607

ncbi_submitter: UW-GEL (University of Wisconsin - Genome Evolution Laboratory)


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Serratia grimesii

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: cecum contents

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: China Agricultural University


ncbi_organism_name: Leptospira interrogans str. FPW1039

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Kribbella sp. NPDC049174

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Saprospirales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Saprospiria;o__Saprospirales;x__environmental samples;s__uncultured Saprospirales bacterium


ncbi_country: Hong Kong

ncbi_isolation_source: CSF

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_assembly_name: Rumen uncultured genome RUG389

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Methylococcaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: soil

ncbi_organism_name: Ktedonobacter sp. SOSP1-85

ncbi_submitter: Graduate School of Agricultural Science, Tohoku University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: USA: Alameda; California; Pep s frontyard; next to middle rose bush

ncbi_organism_name: Streptomyces sp. NBC_00638

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Thermotoga caldifontis

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: Blood

ncbi_submitter: The Chinese University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Enterococcus sp. DIV1767

ncbi_submitter: Broad Institute


ncbi_country: USA: Boston; MA

ncbi_isolation_source: laboratory evolution

ncbi_submitter: Harvard University


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: uncultured Rhodovulum sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC051664


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: University of Colorado Anschutz Medical Campus


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Spongiisociaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Salmonella sp. 741265142_PST

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Streptomyces atroolivaceus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: isolate VK_5

ncbi_isolate: Lactobacillus plantarum VK-5

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: Lactobacillus plantarum VK-5

ncbi_submitter: University of Tartu


ncbi_isolate: AOP1_I1_surf _bin _2

ncbi_organism_name: Corynebacterium variabile

ncbi_strain_identifiers: AOP1_I1_surf _bin _2

ncbi_submitter: Genoscope


ncbi_organism_name: Bartonella sp. AP11XZML

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: uncultured Thermodesulfatator sp.


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- KTt_bin-0340

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Enterobacter cancerogenus


ncbi_organism_name: Waltera acetigignens

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: uncultured Anaerolinea sp.


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pomona


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Liaoning

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Fimbriimonadales bacterium

ncbi_submitter: marine college, shandong university


ncbi_assembly_name: IMG-taxon 2585428150 annotated assembly

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Dethiosulfatibacter;s__Dethiosulfatibacter aminovorans;x__Dethiosulfatibacter aminovorans DSM 17477


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Selenomonas sp.

ncbi_submitter: EMBL-EBI


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: lung

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Ares Genetics


ncbi_country: China: Zhejiang

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Eubacteriaceae bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_submitter: MRSN BI Team


ncbi_country: China: Harbin; Northeastern China

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Changchun Veterinary Research Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridioides sp.

ncbi_submitter: EMG


ncbi_country: Mexico: Guadalajara

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sedimenticola sp.

ncbi_submitter: Portland State University


ncbi_organism_name: Stenotrophomonas acidaminiphila

ncbi_strain_identifiers: SUNEO

ncbi_submitter: National Chung Cheng University


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Sweden

ncbi_submitter: DTU


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_isolation_source: Vagina

ncbi_organism_name: Gardnerella pickettii

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Spain

ncbi_organism_name: Aliarcobacter vitoriensis

ncbi_strain_identifiers: CECT 9230

ncbi_submitter: Universitat Rovira i Virgili


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_country: China: Beijing

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: gut

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: University of Alabama at Birmingham


ncbi_country: India

ncbi_isolation_source: Municipal Waste Water

ncbi_organism_name: Shigella flexneri

ncbi_submitter: St. Xavier's College (Autonomous), Kolkata


ncbi_country: Sri Lanka: Colombo

ncbi_isolation_source: Raw chicken meat

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Methylobacterium sp.

ncbi_submitter: Northeastern University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: China Center of Industrial Culture Collection


ncbi_country: China: Shenzhen

ncbi_organism_name: Cytobacillus firmus

ncbi_submitter: Peking University Shenzhen Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Mexico: desert of Cuatro Cienegas; Coahuila

ncbi_organism_name: Rossellomorea vietnamensis

ncbi_submitter: Cinvestav


ncbi_country: Germany

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: Brazil

ncbi_isolation_source: stool

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Verona


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Hong Kong

ncbi_organism_name: Escherichia sp. E3659

ncbi_submitter: The Hong Kong University of Science and Technology


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Balneolales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli KTE90

ncbi_submitter: Broad Institute


ncbi_submitter: Nanjing Drum Tower Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Portugal

ncbi_organism_name: Stenotrophomonas maltophilia EPM1

ncbi_submitter: Universita degli Studi di Milano


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Paenibacillus illinoisensis

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M2142


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Chongqing Medical University


ncbi_organism_name: Porphyromonas endodontalis

ncbi_submitter: EMG


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Actinomyces sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Russia: Moscow

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Subdoligranulum sp.

ncbi_submitter: EBI


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_strain_identifiers: acrnm

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Hallella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG10595

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Atopobiaceae bacterium


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Enterorhabdus sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Shewanella vesiculosa


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Australia: Orpheus Island

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Pseudoalteromonas distincta

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Japan

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolate: Clinical

ncbi_isolation_source: Human

ncbi_strain_identifiers: Clinical

ncbi_submitter: instituto nacional de salud del peru

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Germany

ncbi_isolation_source: Food production environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_organism_name: Bacteroides uniformis


ncbi_country: USA: DC

ncbi_isolation_source: Throat (pharynx)

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Taiwan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: national health research institutes


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Gingivitis

ncbi_organism_name: Leptotrichia shahii

ncbi_submitter: Division of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Washington University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_organism_name: Actinotignum schaalii FB123-CNA-2

ncbi_submitter: Broad Institute


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejianglab


ncbi_organism_name: Macrococcus animalis

ncbi_submitter: University of Bern


ncbi_organism_name: Vallitaleaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-13093

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_assembly_name: freshwater MAG --- KTt_bin-0593

ncbi_organism_name: uncultured Methylococcaceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: USDA-ARS


ncbi_isolation_source: stool

ncbi_organism_name: Lactobacillus paragasseri

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Australia: Queensland

ncbi_organism_name: Actinobacillus seminis

ncbi_submitter: Centro de Investigaciones en Ciencias Microbiologicas, BUAP


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Paenibacillus sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_organism_name: Desulfuromonadaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Litorivicinaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Chicago; Lurie Children s Hospital

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: Switzerland

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_organism_name: Blautia producta

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Bacteroidales bacterium UBA7731

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA7731


ncbi_organism_name: Selenomonas sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_country: Malaysia: Johor Bharu; Johor

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Monash University Malaysia


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_country: Brazil:Botucatu; Sao Paulo; Centroflora Group agricultural fields

ncbi_isolation_source: surface sterilized leaves from passionfruit

ncbi_organism_name: Pseudomonas flavocrustae

ncbi_strain_identifiers: CBMAI 2609

ncbi_submitter: University of Campinas


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Tannerellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: CSIR- National Institute of Oceanography


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Pakistan

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cardiff University


ncbi_country: Germany: Freising

ncbi_isolation_source: feces

ncbi_organism_name: Waltera intestinalis

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_country: India: New Delhi

ncbi_isolation_source: Respiratory specimen

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Chifeng

ncbi_isolation_source: soil

ncbi_organism_name: Saccharothrix luteola

ncbi_submitter: School of life science


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Pfizer


ncbi_country: China

ncbi_isolation_source: Fermented camel milk

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Serratia proteamaculans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: sludge from two different bioreactors; each one run at a different temprature (R1 at 35 C; R2 at 25 C); artificial municipal wastewater

ncbi_organism_name: Gammaproteobacteria bacterium PRO8

ncbi_submitter: Peking University


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA

ncbi_isolation_source: Oral swab

ncbi_organism_name: Shigella flexneri

ncbi_submitter: NCTR/FDA


ncbi_organism_name: Streptococcus canis

ncbi_submitter: Hospital Universitario Marques de Valdecilla


ncbi_isolation_source: Raw milk

ncbi_submitter: The Ohio State University


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Odoribacter sp. UBA944

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France: Paris

ncbi_isolation_source: bile

ncbi_submitter: CHU de Rennes


ncbi_country: China: Hangzhou

ncbi_genome_representation: partial

ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: dianzhenduan


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Escherichia coli

ncbi_submitter: CDC


ncbi_country: Canada: Lacombe

ncbi_submitter: AAFC


ncbi_isolation_source: the sediments of the Mariana Trench

ncbi_organism_name: Saccharopolyspora gregorii

ncbi_submitter: Ocean University of China


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Hospital Sirio-Libanes


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: EMG


ncbi_organism_name: Enterocloster bolteae


ncbi_submitter: Quadram Institutte


ncbi_country: India: Assam; Guwahati

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 3 0 to 5cm

ncbi_organism_name: Magnetovibrio sp.

ncbi_submitter: Northeastern University


ncbi_organism_name: Salmonella sp. SAL04181

ncbi_submitter: Zhejiang university


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Nocardioides marinus

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Zurich


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Saccharofermentans sp.

ncbi_submitter: INRA


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: wound swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Heidelberg University Hospital


ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG12724

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Meizhou

ncbi_isolation_source: Lead-zinc ore mine

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: National Institute of Public Health

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_assembly_name: IMG-taxon 2595698251 annotated assembly

ncbi_organism_name: Kibdelosporangium aridum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: TX

ncbi_isolation_source: feces psittacine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: contaminated soil

ncbi_organism_name: Pseudarthrobacter naphthalenicus

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Oleiphilaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Microbacterium foliorum

ncbi_submitter: University of Queensland


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Loktanella sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: SAR116 cluster bacterium

ncbi_submitter: Institut de Ciencies del Mar

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__SAR116 cluster bacterium


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Imperial College London


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Cohnella cellulosilytica

ncbi_strain_identifiers: TISTR 1996

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Campylobacter fetus

ncbi_submitter: chu de bordeaux


ncbi_organism_name: Azonexus sp.

ncbi_submitter: Delft University of Technology


ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_organism_name: Escherichia coli

ncbi_submitter: shandong university


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Institut national de la recherche scientifique


ncbi_organism_name: Ligilactobacillus ruminis


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: Nebraska

ncbi_isolation_source: corn silage

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: United State Department of Agriculture


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Myroides sp.

ncbi_submitter: Sichuan University


ncbi_country: Pakistan

ncbi_isolation_source: washroom sink in hospital intensive care unit

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: mouse gut

ncbi_organism_name: Escherichia coli O16:H48

ncbi_submitter: National Microbiology Laboratory at Guelph


ncbi_assembly_name: Rumen uncultured genome RUG059

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: Swine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Beijing Genome Institute


ncbi_organism_name: Muribaculum intestinale


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Christian Medical College


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Segatella buccae

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Agriterribacter sp.

ncbi_submitter: Nanjing University


ncbi_organism_name: Bifidobacteriaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Streptomyces sp. B21-108

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_country: Sweden

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 3178-1

ncbi_submitter: Broad Institute


ncbi_country: South Africa: Lokaleng Village; Mahikeng

ncbi_isolation_source: fecal sample from diarrhoea affected cattle B

ncbi_organism_name: Fermentimonas sp.

ncbi_submitter: North-west University


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: USA: Bronx; NY

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Weissella confusa

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_organism_name: Megasphaera elsdenii

ncbi_submitter: Agriculture research council


ncbi_organism_name: Actinoallomurus sp. NBC_01490

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Institut Pasteur, Universite Paris Cite


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: Kvitko Lab


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: China: Jilin

ncbi_organism_name: Bartonella sp. M0191

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Proximal colon


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Hospital Universitario La Princesa (Madrid)

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CNAG-CRG


ncbi_isolation_source: coastal seawater

ncbi_organism_name: Aliiroseovarius sp. xm-g-7

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodanobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bacteroides caecimuris


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Oceanibaculum pacificum

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_assembly_name: Campylobacter coli CVM N14840-R v1.0

ncbi_country: USA: OR

ncbi_isolation_source: Pork Chop

ncbi_organism_name: Campylobacter coli

ncbi_submitter: FDA


ncbi_assembly_name: Rumen uncultured genome RUG10291

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M1250

ncbi_submitter: Broad Institute


ncbi_country: Japan

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Meijo University faculty of pharmacy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: Austria

ncbi_isolation_source: brain

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: Porcincola intestinalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Denmark: Mariagerfjord

ncbi_isolation_source: activated sludge from Mari_18-Q3-R65-66

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: Switzerland

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Lausanne


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: KU Leuven


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Kenya Medical Research Institute


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of New South Wales


ncbi_country: Austria: Salzburg

ncbi_isolation_source: Infected nail well

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_country: USA: NC

ncbi_isolation_source: tree leaf

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Bangladesh: Mymensingh

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Bangladesh Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Campylobacter coli IPSID-1

ncbi_submitter: IP


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: AAFC


ncbi_country: New Zealand

ncbi_isolation_source: Environment - Horticulture

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Surrey


ncbi_organism_name: Tumidithrix elongata BACA0141

ncbi_submitter: University of Azores


ncbi_country: USA

ncbi_isolation_source: Rectoanal Junction

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium ADurb.Bin026


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Poland

ncbi_isolation_source: sourdough

ncbi_organism_name: Weissella confusa

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_submitter: IZSLER

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: Yonsei University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: FDA/CDC


ncbi_country: Australia

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter tjernbergiae;x__Acinetobacter tjernbergiae DSM 14971 = CIP 107465


ncbi_country: South Africa

ncbi_isolation_source: Rustenburg

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Pretoria


ncbi_country: Kenya: Lwak

ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: Univ. of Maryland


ncbi_country: Brazil: Uberlandia

ncbi_isolation_source: Bone fragment

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: Hospital

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Tecnologico de Monterrey


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Fluoribacter gormanii

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: China: Dajiu Lake

ncbi_isolation_source: sediments

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Cryobacterium sp. TMT1-3

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Brazil: Recife

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Aggeu Magalhaes - FIOCRUZ - Brazil


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: BL15 VRE

ncbi_submitter: University of Bucharest


ncbi_organism_name: [Lactobacillus] rogosae


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Enterococcus faecalis EnGen0223

ncbi_submitter: Broad Institute


ncbi_assembly_name: Rumen uncultured genome RUG10072

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: EMG


ncbi_country: Panama: Bocas del Toro; STRI Point

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Candidatus Dadabacteria bacterium

ncbi_submitter: Stony Brook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Dadabacteria;x__unclassified Candidatus Dadabacteria;s__Candidatus Dadabacteria bacterium


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Acinetobacter gerneri

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: University of Alberta


ncbi_country: USA: WA

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Washington


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: IA

ncbi_isolation_source: environment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_assembly_name: freshwater MAG --- KT6_bin-626

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Shandong

ncbi_isolation_source: bark

ncbi_organism_name: Pseudoclavibacter sp. CFCC 13796

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_assembly_name: IMG-taxon 2501915963 annotated assembly

ncbi_organism_name: Desulfonispora thiosulfatigenes DSM 11270

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Heihe River basin; Eboling Mountain

ncbi_isolation_source: soil

ncbi_submitter: Shangqiu Normal University


ncbi_country: China: Shuikoushan; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Magnetospirillum sp.

ncbi_submitter: South china normal university


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: China: Shenzhen

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: the sixth affiliated hospital of Shenzhen University Health Science Center


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: Pig 30

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: China: Xi an

ncbi_isolation_source: sputum

ncbi_submitter: University College London (UCL)


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: China Agriculture University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Pseudomonas asiatica

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Poland: Suwalki

ncbi_isolation_source: central catheter

ncbi_organism_name: Streptococcus sp. 1055

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Rhodobacter sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: Australia: Tasmania

ncbi_isolation_source: Fish hatchery

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: The University of Queensland


ncbi_organism_name: Phocaeicola coprocola


ncbi_country: Denmark: Region of Southern Denmark

ncbi_organism_name: Streptococcus oralis subsp. tigurinus

ncbi_submitter: Slagelse Hospital


ncbi_country: Portugal: Coimbra

ncbi_isolation_source: Intra-abdominal infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Germany

ncbi_isolate: human

ncbi_isolation_source: Human clinical isolate

ncbi_strain_identifiers: Maus IV;human

ncbi_submitter: IP

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant microti


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Rhone-Alpes

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_isolation_source: Human feces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Butyricicoccaceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_assembly_name: freshwater MAG --- Loclat_bin-08549

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Dialister sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_isolation_source: intestine

ncbi_organism_name: Acinetobacter towneri

ncbi_submitter: City University of Hong Kong


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Proteiniphilum sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Morganella morganii

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Proteus penneri

ncbi_strain_identifiers: CSUR P1867

ncbi_submitter: URMITE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute for Epidemiology


ncbi_isolation_source: lake water

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: The Ohio State University


ncbi_country: USA: Seattle; WA

ncbi_isolation_source: blood

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: JCVI


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_organism_name: Muribaculaceae bacterium


ncbi_assembly_name: IMG-taxon 2599185290 annotated assembly

ncbi_organism_name: Pseudomonas sp. NFPP11

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Actinomycetota bacterium


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Malaysia

ncbi_isolation_source: Pus culture

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Henan

ncbi_isolation_source: bark

ncbi_organism_name: Paenirhodobacter populi

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_organism_name: Prevotella pectinovora

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Kaistella haifensis DSM 19056

ncbi_submitter: Pennsylvania State University Genomic Core

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Weeksellaceae;x__Chryseobacterium group;g__Kaistella;s__Kaistella haifensis;x__Kaistella haifensis DSM 19056


ncbi_country: United Kingdom: Somerset

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: Paraguay: Coronel Oviedo

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: Enterobacter asburiae


ncbi_organism_name: Listeria cossartiae subsp. cayugensis

ncbi_submitter: University of Tennessee

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria cossartiae;sb__Listeria cossartiae subsp. cayugensis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces roseifaciens

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Bauldia sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: EPFL


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken farm

ncbi_submitter: sichuan university


ncbi_country: Svalbard

ncbi_isolation_source: water

ncbi_organism_name: Acinetobacter sp. 105-3

ncbi_submitter: North-Western State Medical University named after II Mechnikov


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: China: Yongping Copper Mine; Jiangxi Province

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: bacterium 1xD42-87

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University of Vienna


ncbi_organism_name: Klebsiella pneumoniae complex sp. WS619

ncbi_submitter: Center for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;x__unclassified Klebsiella pneumoniae complex;s__Klebsiella pneumoniae complex sp. WS619


ncbi_organism_name: Aeromonas sp. 603404

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Gemmatimonadales bacterium


ncbi_submitter: EMG

ncbi_taxonomy: d__Bacteria;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__Candidatus Methylomirabilaceae;g__Candidatus Methylomirabilis;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__Candidatus Methylomirabilaceae;g__Candidatus Methylomirabilis;x__environmental samples;s__uncultured Candidatus Methylomirabilis sp.


ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_organism_name: Oscillospiraceae bacterium YB328

ncbi_submitter: Department of Infection Metagenomics, RIMD, Osaka University


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: Thermophilibacter provencensis


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_organism_name: Castellaniella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: CNRS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas campestris;x__Xanthomonas campestris pv. campestris;x__Xanthomonas campestris pv. campestris str. CN05


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangnan University


ncbi_organism_name: uncultured Leptolinea sp.


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Myxococcales bacterium


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_assembly_name: freshwater MAG --- KR3_bin-1150

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_organism_name: uncultured Stakelama sp.