ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_assembly_level: Scaffold

ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Ruminococcus sp. CAG:382

ncbi_submitter: DTU


gtdb_representative: f

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada: Ontario;Guelph

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Columbia University Medical Center


ncbi_isolation_source: Stool Culture

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Broad Institute


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli P0304816.7

ncbi_submitter: IGS


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_country: Denmark: Odense NW

ncbi_isolation_source: activated sludge from OdNW_18-Q3-R42-56

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_country: Japan

ncbi_isolation_source: skin of face; 6 single-cells amplified by MDA combined with human skin metagenome reads

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: bioBiome, Inc.


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-291

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Leptospiraceae bacterium

ncbi_strain_identifiers: new MAG-291

ncbi_submitter: Micoorganism


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: University of Chicago


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: National University of Singapore


ncbi_country: Norway

ncbi_isolation_source: Meat processing equipment

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Nofima


ncbi_country: Pacific Ocean: Station ALOHA

ncbi_isolation_source: Trichodesmium-associated heterocystous diazotroph (hetDA) enrichment; trichodesmium colony originally collected aboard the R/V Kilo Moana (KM10-13) near Station ALOHA

ncbi_organism_name: Rivularia sp. MS3

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Rivulariaceae;g__Rivularia;x__unclassified Rivularia (in: cyanobacteria);s__Rivularia sp. MS3


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: McGill University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_country: Canada: Lacombe

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_organism_name: Spiribacter pallidus

ncbi_submitter: University of Sevilla, Spain


ncbi_organism_name: Ponticoccus sp. SC6-32

ncbi_submitter: Shantou University


ncbi_country: USA: Ithaca

ncbi_isolation_source: cows with mastitis at dairy farm

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: UNICAMP


ncbi_organism_name: Microcoleus sp.

ncbi_submitter: University of New Brunswick


ncbi_country: USA: New Jersey

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of South Australia


ncbi_organism_name: Acidovorax sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_organism_name: Zhongshania sp.


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: equine clinic - staff

ncbi_submitter: University of Veterinary Sciences


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: EMG


ncbi_organism_name: Vagococcus lutrae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: uncultured Nostocoides sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Nigeria

ncbi_isolation_source: environmental

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Igbinedion University Okada Edo state Nigeria


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Mesotoga sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chongqing Medical University


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: ISS SRV-K

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: NASA


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: sediment

ncbi_organism_name: Thiomicrorhabdus sp. ZW0627

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Verrucomicrobiota bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_country: Ecuador

ncbi_isolation_source: Human clinical

ncbi_organism_name: Burkholderia pseudomallei 7894

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: Zhejiang University


ncbi_country: China

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_assembly_level: Chromosome

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_organism_name: Stenotrophomonas rhizophila


ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: stool

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-4356

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: BILS


ncbi_country: USA: Soudan Iron Mine; Minnesota

ncbi_isolation_source: brine fluids

ncbi_organism_name: Actibacterium sp.

ncbi_submitter: University of Michigan


ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: AAFC


ncbi_organism_name: Sphingobacteriaceae bacterium


ncbi_organism_name: Prevotella sp. CAG:279

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Yersinia pestis CMCC104003

ncbi_submitter: Beijing Genomics Institute


ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: University of Sorocaba (UNISO)


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Rhodospirillaceae bacterium TMED8

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Bacillus proteolyticus

ncbi_submitter: Interfaculty Research Collaboration “One Health” of the University of Bern


ncbi_isolation_source: cattle feces

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Hoylesella buccalis


ncbi_country: Australia

ncbi_isolation_source: ear

ncbi_organism_name: Staphylococcus felis

ncbi_submitter: University of Melbourne


ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: China agricultural university


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 317

ncbi_organism_name: Staphylococcus gallinarum

ncbi_strain_identifiers: SNUC 5382

ncbi_submitter: University of Calgary


ncbi_country: USA: Little Rock

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Center for Toxicological Research


ncbi_country: Switzerland

ncbi_isolation_source: Tuna sandwich

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: Industrial cooling tower water

ncbi_organism_name: Legionella oakridgensis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland: Basel

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: ETH Zurich


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_submitter: University of Tartu


ncbi_country: United Kingdom

ncbi_isolation_source: Animal feces

ncbi_organism_name: Aliarcobacter skirrowii CCUG 10374

ncbi_submitter: Universitat Rovira i Virgili


ncbi_assembly_name: Rumen uncultured genome RUG14566

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: Candidatus Ozemobacteraceae bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;c__Candidatus Ozemobacteria;x__Candidatus Ozemobacterales;f__Candidatus Ozemobacteraceae;x__unclassified Candidatus Ozemobacteraceae;s__Candidatus Ozemobacteraceae bacterium


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1015

ncbi_submitter: Broad Institute


ncbi_country: China: Tibet; Ngari Prefecture; Qinghai-Tibetan Plateau

ncbi_isolation_source: soil

ncbi_organism_name: Lentzea tibetensis

ncbi_refseq_category: reference genome

ncbi_submitter: microbiology Chinese Academy of Science


ncbi_country: USA

ncbi_isolation_source: rectal swab

ncbi_submitter: NISC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae;x__Klebsiella pneumoniae subsp. pneumoniae KPNIH12


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_country: Switzerland: Lausanne

ncbi_isolation_source: whole pupae

ncbi_organism_name: Arsenophonus nasoniae

ncbi_submitter: University of Liverpool


ncbi_organism_name: Xenorhabdus sp. KJ12.1

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Brazil: Campinas; SP

ncbi_isolation_source: Oropharynx

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: State University of Campinas


ncbi_country: South Korea:Wanju-Gun

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides faecalis

ncbi_submitter: Korean Research Institute of Bioscience and Biotechnology


ncbi_country: Brazil

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_country: Malawi: Lilongwe

ncbi_submitter: NORHED grant


ncbi_submitter: shandong university


ncbi_country: Portugal: Lisbon

ncbi_isolation_source: vegetable

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_organism_name: Chlamydia crocodili

ncbi_submitter: Mahidol University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: California

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter lanienae

ncbi_submitter: USDA


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Italy: Veneto

ncbi_isolation_source: rabbit meat processing plant environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Bologna


ncbi_country: China

ncbi_isolation_source: ICU

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Guangzhou Medical University


ncbi_country: China: Shenzhen

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: BGI


ncbi_country: USA: Cambridge

ncbi_isolation_source: stool

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Broad Institute


ncbi_country: USA: North Carolina

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae CHS 45

ncbi_strain_identifiers: CHS 45

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae CHS 45


ncbi_organism_name: Parapedobacter flavus

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Owenweeksia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Atlantic Ocean

ncbi_isolation_source: South Atlantic Ocean

ncbi_organism_name: Porticoccus sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: Angelo; CA

ncbi_isolation_source: Soil sample from Angelo meadow plot 1; 40cm depth; pre rain

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokubacteria bacterium 13_1_40CM_69_96


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Clostridioides difficile P8

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Alistipes shahii


ncbi_organism_name: Aquabacterium sp.

ncbi_submitter: Joint Microbiome Facility

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__unclassified Aquabacterium;s__Aquabacterium sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: Universite Laval


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: Curvibacter sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Roseburia hominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: NTHi375 delta nagB#9

ncbi_organism_name: Haemophilus influenzae

ncbi_strain_identifiers: NTHi375 delta nagB#9

ncbi_submitter: Mississippi State University


ncbi_organism_name: Veillonella atypica


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Nocardia gipuzkoensis

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Oswaldo Cruz Institute


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: University of Parma


ncbi_organism_name: Candidatus Spyradenecus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Lentisphaerales;f__Lentisphaeraceae;x__Lentisphaeraceae incertae sedis;g__Candidatus Spyradenecus;x__unclassified Candidatus Spyradenecus;s__Candidatus Spyradenecus sp.


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Greenland

ncbi_organism_name: Bacillus safensis

ncbi_strain_identifiers: NRRL BD-192

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Israel: Karie Deshe

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Weizmann Institute


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Elusimicrobiales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Canada

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Public Health Agency of Canada


ncbi_country: China: The East China Sea

ncbi_isolation_source: surface seawater

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Ocean University of China


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Brachyspira pilosicoli

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_submitter: Peking University People's Hospital


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Blood or cerebrospinal fluid

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Region Zaeland, Denmark


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Dubosiella sp.


ncbi_submitter: anyida


ncbi_organism_name: Candidatus Cloacimonas sp.

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;x__unclassified Candidatus Cloacimonas;s__Candidatus Cloacimonas sp.


ncbi_isolation_source: Colon


ncbi_isolate: Lactobacillus mudanjiangensis

ncbi_isolation_source: Chinese traditional pickle fermentation

ncbi_organism_name: Lactiplantibacillus mudanjiangensis

ncbi_strain_identifiers: Lactobacillus mudanjiangensis

ncbi_submitter: UANTW


ncbi_organism_name: Mycobacterium xenopi


ncbi_country: China: Ningxia Hui autonomous region

ncbi_isolation_source: desert sand

ncbi_organism_name: Geodermatophilus sabuli

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_organism_name: Cronobacter turicensis


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Staphylococcus equorum

ncbi_strain_identifiers: Sil NS 13

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Germany: Goettingen

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University Medical Center Goettingen


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Syntrophaceae bacterium UBA6112

ncbi_submitter: University of Queensland


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: University of Chicago


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_assembly_name: Tenacibaculum platacis strain 190524A05cT

ncbi_organism_name: Tenacibaculum platacis

ncbi_submitter: INRA


ncbi_country: China

ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: China Agricultural University


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_country: Ireland: Northern region of ROI

ncbi_isolation_source: cecal contents

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus sanguinis SK353

ncbi_submitter: Baylor College of Medicine


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BGI


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Argentina: ValdA(c)s Peninsula

ncbi_isolation_source: cloacae of healthy wild penguins (Spheniscus magellanicus)

ncbi_organism_name: Corynebacterium sphenisci DSM 44792

ncbi_submitter: Bielefeld University


ncbi_organism_name: Wolbachia endosymbiont of Drosophila bocqueti

ncbi_submitter: University of Montana


ncbi_isolation_source: Sepsis

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of West London


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Staphylococcus pettenkoferi

ncbi_submitter: INSERM U1047


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Nevskiaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: assembly Coobra isolate 3

ncbi_isolation_source: Alpha-amylase enzym 4g (Coobra)

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Sciensano


ncbi_country: Australia: WA; Badgingarra

ncbi_organism_name: Mesorhizobium sp. B2-8-6

ncbi_submitter: Curtin University


ncbi_country: China: Jiangsu

ncbi_isolation_source: Epidemic materials

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Yangzhou University


ncbi_country: South Korea: Modo island

ncbi_organism_name: Cohnella pontilimi

ncbi_submitter: Chung-Ang University


ncbi_isolation_source: water

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_country: China: Yantai City; Shandong Province

ncbi_isolation_source: coastal sediment

ncbi_organism_name: Oceanisphaera psychrotolerans

ncbi_strain_identifiers: LAM-WHM-ZC

ncbi_submitter: Institute of Agricultural Resources and Regional Planning


ncbi_organism_name: uncultured Oxalobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ruminococcus sp. OF03-6AA

ncbi_submitter: BGI


ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: Germany

ncbi_isolation_source: stool

ncbi_submitter: Wroclaw University of Environmental and Life Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: Universite Laval


ncbi_country: Argentina

ncbi_isolation_source: Osteomyelitis

ncbi_organism_name: Staphylococcus aureus DAR3183

ncbi_submitter: Broad Institute


ncbi_assembly_name: freshwater MAG --- Loclat_bin-18856

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_assembly_name: IMG-taxon 2643221445 annotated assembly

ncbi_organism_name: Idiomarina zobellii

ncbi_strain_identifiers: KMM 231

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: India: Kolkata

ncbi_isolation_source: blood sample from neonates

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_country: USA

ncbi_isolation_source: blood sample from patient with bacteremia

ncbi_submitter: University of Maryland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus CIG1500


ncbi_organism_name: Brucella intermedia

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: feces

ncbi_submitter: SC


ncbi_isolation_source: Pooled cattle faecal samples collected from floor of farm

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The REHAB Consortium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Akkermansia muciniphila


ncbi_isolate: AYFPY

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Centre for genomic regulation (CRG)


ncbi_isolation_source: 1-year-old female

ncbi_organism_name: Escherichia coli

ncbi_submitter: Shanghai Majorbio Bio-pharm Technology Co.,Ltd


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Freie Universitaet Berlin


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Michigan


gtdb_type_species_of_genus: t

ncbi_organism_name: Bartonella bacilliformis KC583

ncbi_submitter: TIGR


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Broad Institute


ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium


ncbi_assembly_name: GS De Novo Assembly

ncbi_country: India: MS

ncbi_isolation_source: vegetable market soil

ncbi_organism_name: Pantoea dispersa EGD-AAK13

ncbi_submitter: National Environmental Engineering Research Institute-CSIR


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Streptomyces sp. NPDC005266

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Mycoplasma leachii 99/014/6

ncbi_submitter: Swiss Institute of Bioinformatics (Vital-IT)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma leachii;x__Mycoplasma leachii 99/014/6


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Florida


ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: USA: Michigan

ncbi_isolate: nissing

ncbi_isolation_source: respiratory

ncbi_organism_name: Enterobacter hormaechei

ncbi_strain_identifiers: nissing;UM_CRE_14 patient 13


ncbi_isolation_source: Sea water

ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: Nippon veterinary and life sciense university


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Pasteurella multocida

ncbi_strain_identifiers: 2154PM;swab isolate 1

ncbi_submitter: University of California, Davis


ncbi_country: Taiwan

ncbi_isolation_source: wound

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: SC


ncbi_country: USA: Wiser Lake; Washington

ncbi_isolation_source: cyanobacterial bloom in freshwater lake

ncbi_organism_name: Chryseotalea sp. WA131a

ncbi_submitter: Oregon State University


ncbi_country: Italy: Marche; Ancona; Loreto

ncbi_isolation_source: blood

ncbi_submitter: IZSAM


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: University of East Anglia


ncbi_isolation_source: feces (Sus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: EMG


ncbi_organism_name: uncultured Blastocatellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Selenomonas sp.


ncbi_organism_name: Polymorphobacter sp.

ncbi_submitter: University of Maryland Center for Environmental Science


ncbi_organism_name: Amycolatopsis minnesotensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_submitter: Kyoto University


ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Peru

ncbi_isolation_source: enrichment culture

ncbi_organism_name: Leptospirillum ferriphilum

ncbi_submitter: Fundacion Ciencia & Vida


ncbi_organism_name: Lacticaseibacillus rhamnosus PEL6

ncbi_submitter: Helsinki University


ncbi_submitter: National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Pseudonocardia sulfidoxydans

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University hospital Lubeck


ncbi_isolation_source: lung

ncbi_submitter: University of Trento


ncbi_isolation_source: hot spring environment

ncbi_organism_name: Novosphingobium meiothermophilum

ncbi_strain_identifiers: SYSU G00007

ncbi_submitter: Sun Yat-Sen university


ncbi_submitter: SC


ncbi_country: Brazil: Amazonas; Iranduba

ncbi_isolation_source: gut

ncbi_organism_name: Lactobacillus sp. ESL0701

ncbi_submitter: University of Lausanne


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Canada: Quebec

ncbi_isolation_source: swab

ncbi_submitter: Government of Canada


ncbi_country: Russia: Kamchatka

ncbi_isolation_source: root nodule

ncbi_organism_name: Phyllobacterium sp. 628

ncbi_submitter: ARRIAM


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella sp. 64

ncbi_submitter: UMCG


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Nonomuraea sp. NPDC050547

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cepheid


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Cleveland Clinic


ncbi_country: USA: Madison; WI

ncbi_isolation_source: Conversion residue fermenting bioreactor

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Flavobacteriales bacterium UBA1962

ncbi_submitter: University of Queensland


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Japan

ncbi_isolation_source: Soil

ncbi_organism_name: Bordetella bronchiseptica

ncbi_submitter: Keio University


ncbi_isolation_source: human feces metagenome


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Hospital patient

ncbi_submitter: LONDON SCHOOL OF HYGIENE AND TROPICAL MEDICINE


ncbi_isolation_source: sewage

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: Milk powder plant

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: University of Zurich


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Ocean University of China


ncbi_country: Germany

ncbi_isolation_source: nasal swab

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: RNA Bioinformatics and High-Throughput Analysis Friedrich Schiller University Jena


ncbi_country: China: Luzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas plecoglossicida

ncbi_submitter: The Affiliated Hospital Of Southwest Medical University


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Emergencia sp.


ncbi_organism_name: Enterococcus sp.


ncbi_organism_name: Staphylococcus pseudintermedius


ncbi_organism_name: Segatella oulorum


ncbi_country: China: Tibet; Qinghai

ncbi_isolation_source: soil

ncbi_organism_name: Hymenobacter tibetensis

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_country: Puerto Rico: Maunabo

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay water

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Clemson University


ncbi_isolation_source: Dog

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University Hospital Basel


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_country: Egypt

ncbi_isolation_source: fluid from drain

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: bioMerieux


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Brazil: Porto Alegre

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: United Kingdom:Scotland


ncbi_organism_name: Xanthomonas translucens pv. translucens

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas translucens;x__Xanthomonas translucens pv. translucens


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: United Kingdom

ncbi_submitter: Swansea University


ncbi_organism_name: Candidatus Egerieenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Egerieenecus;x__unclassified Candidatus Egerieenecus;s__Candidatus Egerieenecus sp.


ncbi_organism_name: Corynebacterium sp. LK2602

ncbi_submitter: University of Wisconsin - Madison


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Denmark: Avedore

ncbi_isolation_source: activated sludge from Aved_18-Q3-R54-62

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_submitter: University of California Davis


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: DS-I Africa


ncbi_organism_name: Chryseobacterium sp. NFX27

ncbi_submitter: iBET


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Bifidobacterium bifidum


ncbi_organism_name: uncultured Mageeibacillus sp.


ncbi_organism_name: uncultured Rhizobium sp.


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Pseudomonas sp. BNK-44-b

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: First Affiliated Hospital of Guangzhou Medical University,Guangzhou Institute of Respiratory Health,


ncbi_organism_name: Mycolicibacterium elephantis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Robert Debre, APHP - Universite Paris Cite, IAME, INSERM, Paris, France


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Actinomycetota bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Ectobacillus antri

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Nocardioides sp. NBC_00850

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Roseibacillus sp.


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: Pau University


ncbi_isolate: Streptococcus species

ncbi_isolation_source: Human

ncbi_strain_identifiers: Streptococcus species

ncbi_submitter: UNIVERSITY COLLEGE LONDON


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_submitter: University of Alberta


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Insytitute of microbiology and epidemiology


ncbi_isolation_source: rhizosphere soil culture M44

ncbi_organism_name: Brevibacterium sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Switzerland: St.Gallen

ncbi_isolation_source: Cell culture

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Agroscope, Molecular diagnostics, Genomics and bioinformatics


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Enterobacter sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Chile: Santiago

ncbi_submitter: Universidad de Santiago de Chile


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Denmark

ncbi_isolation_source: Brain/blood

ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Cambridge


ncbi_organism_name: Streptosporangium sp. NPDC002544

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Penn State


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Patescibacteria group bacterium UBA5230

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA5230


ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE2

ncbi_isolation_source: lake water

ncbi_organism_name: Pirellula sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Aeromonas taiwanensis

ncbi_submitter: UCONNMISEQ


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Lasioglossum morio


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_submitter: Swiss Tropical and Public Health Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_organism_name: Vibrio nigripulchritudo Wn13

ncbi_submitter: Genoscope CEA


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Czech Republic

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CEITEC VFU


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Azospirillum sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA

ncbi_isolation_source: Invasive

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA


ncbi_country: Canada: Alberta

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas translucens pv. undulosa

ncbi_submitter: Ottawa Research and Development Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas translucens;x__Xanthomonas translucens pv. undulosa


ncbi_organism_name: Actinacidiphila alni

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: South Korea: Crater lake; Baengnokdam; Hallasan Mountain; Jeju island

ncbi_organism_name: Deinococcus radiodurans

ncbi_submitter: Korea Atomic Energy Research Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Romboutsia ilealis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: lung

ncbi_submitter: Ares Genetics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Loyola University Chicago


ncbi_country: Australia

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_isolation_source: Healthy lean donor

ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Lallemand Health Solutions


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: INRA


ncbi_strain_identifiers: ATCC BAA1680

ncbi_submitter: Longhorn Vaccines & Diagnostics


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: Red wine

ncbi_organism_name: Oenococcus oeni S161

ncbi_submitter: Institut des Sciences de la Vigne et du Vin


ncbi_organism_name: uncultured Slackia sp.


ncbi_country: France

ncbi_organism_name: Spiroplasma turonicum

ncbi_submitter: Beltsville Agricultural Research Center


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Xinfangfangia sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_country: China

ncbi_isolation_source: Interal medicine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Guangzhou Medical University


ncbi_country: Mexico: CDMX

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: INSTITUTO MEXICANO DEL SEGURO SOCIAL


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Leptotrichia sp. OH3620_COT-345

ncbi_submitter: UC Davis


ncbi_country: Thailand: Phatthalung

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Lund University


ncbi_country: Germany

ncbi_organism_name: Rhizobium leguminosarum bv. viciae VF39

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Rhizobium/Agrobacterium group;g__Rhizobium;s__Rhizobium leguminosarum;x__Rhizobium leguminosarum bv. viciae;x__Rhizobium leguminosarum bv. viciae VF39


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F41882

ncbi_submitter: Broad Institute


ncbi_assembly_name: freshwater MAG --- Umea_bin-00804

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: BILS


ncbi_country: Bangladesh: Nandipara

ncbi_submitter: Oxford University Clinical Research Unit


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: SWAB FROM SKIN TISSUE

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: istituto zooprofilattico sperimentale della lombardia e dell'emilia romagna-i.z.s.l.e.r.


ncbi_organism_name: Klebsiella pasteurii

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: United Kingdom

ncbi_organism_name: Williamsia muralis

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus agalactiae CCUG 24810

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_organism_name: Corallococcus exiguus

ncbi_submitter: Aberystwyth University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_country: Australia

ncbi_organism_name: Bordetella bronchiseptica MBORD678

ncbi_submitter: JCVI


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Germany: Jena

ncbi_isolation_source: Incubator

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Jena University Hospital


ncbi_organism_name: Streptomyces lavendulocolor

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Buchnera aphidicola (Drepanosiphum platanoidis)

ncbi_submitter: Centre for Microbiology and Environmental Systems Science


ncbi_country: Kenya

ncbi_organism_name: Bacteroidales bacterium UBA6377

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA6377


ncbi_country: USA: Fort Lauderdale Research & Education Center; Florida

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Bulgaria

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: SC


ncbi_isolation_source: faecal


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_isolation_source: surface water

ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: NAK 213

ncbi_submitter: Wageningen Plant Research


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Hoministercoradaptatus ammoniilyticus

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_country: Germany: Essen

ncbi_isolation_source: Stream model ecosystem (AquaFlow mesocosm system)

ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: CRC RESIST


ncbi_organism_name: Staphylococcus auricularis

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Russia: Moscow; Lake Hotontyn Nur; Mongolia

ncbi_isolation_source: enrichment culture from haloalkaline lake

ncbi_organism_name: Candidatus Absconditicoccus praedator

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy: d__Bacteria;p__Candidatus Absconditibacteriota;c__;o__Candidatus Absconditabacterales;f__Candidatus Absconditicoccaceae;g__Candidatus Absconditicoccus;s__Candidatus Absconditicoccus praedator

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Absconditibacteriota;o__Candidatus Absconditabacterales;f__Candidatus Absconditicoccaceae;g__Candidatus Absconditicoccus;s__Candidatus Absconditicoccus praedator


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: Norway: Oslo

ncbi_isolation_source: fermented balsam pear

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: Ulm University


ncbi_country: China: Shuikoushan; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: South china normal university


ncbi_organism_name: Campylobacter jejuni


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Guangxi University


ncbi_assembly_name: freshwater MAG --- A14_bin-1995

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Methylobacillus sp.

ncbi_submitter: BILS


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: WA

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Washington


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Berryella intestinalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human skin metagenome

ncbi_organism_name: uncultured Corynebacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: University of Queensland


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Acinetobacter nosocomialis


ncbi_country: China: the East China Sea

ncbi_isolation_source: enrichment culture inoculated with surface estuarine sediment

ncbi_organism_name: Nitrobacter sp.

ncbi_submitter: Shanghai Jiao Tong University (SJTU)


ncbi_country: Australia: Magnetic Island; QLD

ncbi_organism_name: Clostridiales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy: d__Bacteria;p__Candidatus Deferrimicrobiota;c__Candidatus Deferrimicrobia;o__Candidatus Deferrimicrobiales;f__Candidatus Deferrimicrobiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Deferrimicrobiota;c__Candidatus Deferrimicrobia;o__Candidatus Deferrimicrobiales;f__Candidatus Deferrimicrobiaceae;x__unclassified Candidatus Deferrimicrobiaceae;s__Candidatus Deferrimicrobiaceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Qingdao Agriculture University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Berkeley

ncbi_isolation_source: soil

ncbi_organism_name: Stutzerimonas degradans

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: China: Guangzhou; Guangdong

ncbi_isolation_source: marine sediment

ncbi_organism_name: Rubrobacter indicoceani

ncbi_strain_identifiers: SCSIO 08198

ncbi_submitter: South China Sea Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Southern Federal University


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: France

ncbi_isolation_source: Blood culture

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1649 from squamous cell carcinomas patient MST030

ncbi_organism_name: Staphylococcus schleiferi


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Alistipes finegoldii CAG:68

ncbi_submitter: DTU


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_submitter: BSNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis;x__Bacillus subtilis subsp. subtilis str. 168


ncbi_organism_name: Enterococcus innesii

ncbi_submitter: University of Parma


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Portnoyibacteriota;s__Candidatus Portnoybacteria bacterium CG_4_10_14_0_2_um_filter_44_20


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Odoribacter splanchnicus


ncbi_submitter: Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Queensland


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: Spain

ncbi_isolation_source: Complejo Asistencial Universitario de Salamanca (Salamanca)

ncbi_organism_name: Serratia marcescens

ncbi_submitter: CNAG-CRG


ncbi_assembly_name: IMG-taxon 2585428175 annotated assembly

ncbi_organism_name: Tepidibacter formicigenes DSM 15518

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_country: USA: Seal Beach; California

ncbi_isolation_source: aquifer

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_strain_identifiers: KC

ncbi_submitter: Norwegian University of Life Sciences


ncbi_submitter: Zhejiang university


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Heyndrickxia sporothermodurans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_country: Italy

ncbi_isolation_source: lactic starter

ncbi_organism_name: Lactobacillus helveticus

ncbi_strain_identifiers: CIRM-BIA 2187

ncbi_submitter: Brigham Young University


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Zhejiang

ncbi_isolation_source: farm environment

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_organism_name: Candidatus Midichloria sp.

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Candidatus Midichloriaceae;g__Candidatus Midichloria;x__unclassified Candidatus Midichloria;s__Candidatus Midichloria sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Kocuria carniphila

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_submitter: USDA


ncbi_country: Thailand: Ubon

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Germany

ncbi_isolation_source: food

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: The German Federal Institute for Risk Assessment (BfR)


ncbi_submitter: Center for Microbial Communities


ncbi_country: Canada: Lacombe

ncbi_organism_name: Campylobacter hominis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Hassallia sp.

ncbi_submitter: Monash University


ncbi_country: China

ncbi_isolation_source: environment

ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: shandong university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0089

ncbi_submitter: Broad Institute


ncbi_organism_name: Curtobacterium phyllosphaerae

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_isolation_source: soil

ncbi_organism_name: Stenotrophomonas sp. STM01

ncbi_submitter: University of Chicago


ncbi_country: South Africa: Mafikeng

ncbi_isolation_source: Maize rhizosphere

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: North-West University, South Africa


ncbi_country: India: Bengaluru

ncbi_isolation_source: Lung with lesions

ncbi_organism_name: Pasteurella multocida

ncbi_strain_identifiers: PMS 19

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Slovenia: Piran; Adriatic Sea; Gulf of Piran

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Institut Pasteur of Madagascar


ncbi_country: Ireland

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Fructilactobacillus sanfranciscensis

ncbi_submitter: Shanxi University


ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Phycicoccus elongatus

ncbi_submitter: Nanjing University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: uncultured Syntrophales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: uncultured Chthonomonadaceae bacterium


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Burkholderia sp. BCCCDS05

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: national health research institutes


ncbi_organism_name: Serratia proteamaculans

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: NSU Genome Research Institute (NGRI)


ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_submitter: The University of Auckland


ncbi_organism_name: Dialister invisus

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Mycoplasmataceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Cuba: Parque Nacional Topes de Collantes; Sierra del Escambray

ncbi_isolation_source: termite gut

ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Second Affiliated Hospial of Zhejiang University, School of Medicine


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Aureimonas sp. Leaf427

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Sphingobacterium griseoflavum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Acidovorax sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_country: Lithuania: Prienai

ncbi_isolation_source: Raw bovine milk

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Lithuanian University of Health Sciences


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Candidatus Angelobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;g__Candidatus Angelobacter;x__unclassified Candidatus Angelobacter;s__Candidatus Angelobacter sp.


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: USA: District of Columbia

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: USA: Stockton; CA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: California Department of Public Health


ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Valencia


ncbi_country: France: Brest

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: Water column of Rimov Reservoir; Czechia

ncbi_organism_name: Candidatus Methylopumilus universalis

ncbi_submitter: Biology Centre CAS, Institute of Hydrobiology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_organism_name: Enterococcus faecium


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Pseudomonas poae

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Sulfobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Candidatus Sulfobium;x__unclassified Candidatus Sulfobium;s__Candidatus Sulfobium sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_country: China: Maotai; Renhuai

ncbi_isolation_source: daqu

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Jiangnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Bacteroidales bacterium M1

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Serratia ficaria

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: coral

ncbi_organism_name: Endozoicomonas sp. G2_2

ncbi_submitter: University of Konstanz


ncbi_country: China: Guangzhou

ncbi_organism_name: Laribacter hongkongensis

ncbi_submitter: Zhujiang Hospital


ncbi_country: Czech Republic

ncbi_isolation_source: laboratory strain

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Faculty of Science, Masaryk University


ncbi_country: Chile

ncbi_isolation_source: kelp gull (Larus dominicanus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: Senegal: Boulal

ncbi_isolation_source: Groundnut Field

ncbi_organism_name: Bradyrhizobium sp. ISRA435

ncbi_submitter: IRD


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: Lebanon

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: VRE 44

ncbi_submitter: Lebanese American University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: uncultured Amylibacter sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolate: metabat2_coassembly_bwa.176 MAG

ncbi_organism_name: Rikenellaceae bacterium

ncbi_strain_identifiers: metabat2_coassembly_bwa.176 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_country: China: East China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_country: Croatia: Zagreb

ncbi_isolation_source: Hospital wastewater

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Rudjer Boskovic Institute


ncbi_country: China: Sichuan

ncbi_isolation_source: stool

ncbi_submitter: China CDC


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leicester


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Zhejiang

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Municipal Hospital Affiliated to Taizhou University


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Queen Mary University of London


ncbi_country: USA:California Monterey

ncbi_isolation_source: Symptomatic leaf tissue

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Cornell University


ncbi_country: USA

ncbi_isolation_source: cystic fibrosis sputum

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stanford University


ncbi_country: Brazil:Minas Gerais; Santa Luzia

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Northeastern University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Weissella confusa

ncbi_submitter: BGI-Shenzhen


ncbi_country: Thailand: Pattani

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: South Korea: Daegu

ncbi_organism_name: Barnesiella sp. B2-R-119

ncbi_submitter: Kyungpook National University School of Medicine


ncbi_country: USA: Waikiki; HI

ncbi_isolation_source: Base of shrub near apt.; Ala Wai St.

ncbi_organism_name: Sporosarcina sp. P34

ncbi_submitter: University of Arizona


ncbi_organism_name: Sinimarinibacterium sp.

ncbi_submitter: Tang lab


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Vagococcus sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: University of Queensland


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: USA: Buras; LA

ncbi_isolation_source: coastal waters

ncbi_organism_name: Gammaproteobacteria bacterium LSUCC0057

ncbi_submitter: University of Southern California


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Makerere University


ncbi_submitter: Molecular Genetics Laboratory, Department of Biological Sciences, School of Science, Tokyo Metropolitan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli K-12;x__Escherichia coli str. K-12 substr. MG1655


ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Agathobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Senegal

ncbi_isolation_source: host stool sample

ncbi_organism_name: Clostridium senegalense JC122

ncbi_submitter: laboratoire URMITE CNRS 6236


ncbi_country: USA: Cambridge

ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Broad Institute


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong University


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Pfizer


ncbi_country: France: Rade de Villefranche-sur-Mer

ncbi_isolation_source: plastic in seawater

ncbi_organism_name: Marinobacter sp. MDS2

ncbi_submitter: Instituto de Biotecnologia


ncbi_organism_name: uncultured Victivallales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Phenylobacterium aquaticum

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Micrococcaceae bacterium Sec5.7

ncbi_submitter: Universidad Autonoma de Chile


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_submitter: Institute of Environmental Science and Research


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_assembly_name: Rumen uncultured genome RUG14478

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Jiangsu

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonas caricapapayae

ncbi_strain_identifiers: ICMP 4086

ncbi_submitter: University of Toronto


ncbi_country: Japan

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium intracellulare

ncbi_submitter: Niigata University School of Medicine


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: INRA


ncbi_country: China: Shanghai

ncbi_isolation_source: EMS/AHPND-diseased hepatopancreas

ncbi_organism_name: Vibrio owensii

ncbi_submitter: ShangHai Ocean University


ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: USDA-ARS


ncbi_isolation_source: feces

ncbi_submitter: Nanjing agticultural university


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Czech Republic

ncbi_isolation_source: soil

ncbi_organism_name: Mucilaginibacter sp. L196

ncbi_submitter: Institute of Microbiology of the AS CR


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Infectious Diseases Area, Respiratory Infection and Antimicrobial Resistance Group, Biogipuzkoa Heal


ncbi_country: Croatia: Zagreb

ncbi_isolation_source: breast milk

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: IGA Technology Services Srl


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA:Bakersfield; California

ncbi_organism_name: Xylella fastidiosa subsp. fastidiosa

ncbi_submitter: USDA


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Malaysia: Melacca

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for medical research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Lachnospira eligens


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: France: Paris

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Louis Hospital


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Freshwater lake

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnobacterium sp.

ncbi_submitter: EBI


ncbi_organism_name: Paramuribaculum intestinale


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Colombia

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus DAR5832

ncbi_submitter: Broad Institute


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC