ncbi_isolation_source: milk powder

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nankai Universigy


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


gtdb_representative: f

ncbi_assembly_level: Scaffold

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: National Health Research Institutes


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Denmark: Lyngby

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: DTU Biosustain


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Psychrobacter sp. DM8

ncbi_submitter: Pukyong National University


ncbi_organism_name: Scardovia wiggsiae

ncbi_submitter: EMG


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10191

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Ireland

ncbi_isolation_source: skim milk powder (medium heat)

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Teagasc Agriculture and Food Development Authority


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Mexico

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_country: China

ncbi_isolation_source: intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_country: Belgium

ncbi_isolation_source: Pairi Daiza

ncbi_submitter: Faculty of Veterinary Medicine, Ghent University


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: New Zealand: Palmerston North

ncbi_organism_name: Campylobacter helveticus

ncbi_submitter: Massey University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Nostoc sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Escherichia coli KTE94

ncbi_submitter: Broad Institute


ncbi_country: Canada: Near Fort McMurray in northeastern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Bacteriovoracaceae bacterium UBA6144

ncbi_submitter: University of Queensland


ncbi_country: New Zealand:Christchurch

ncbi_isolation_source: Respiratory sample - sputum

ncbi_organism_name: Legionella longbeachae

ncbi_submitter: Canterbury Health Laboratories


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Adelaide Medical School


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Microbacterium sp. W4I4

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Poultry Farm

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_assembly_level: Chromosome

ncbi_country: Germany: Braunschweig

ncbi_isolation_source: sediment

ncbi_organism_name: Gimesia chilikensis

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_isolation_source: fecal incubation

ncbi_organism_name: Pilosibacter sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_country: USA

ncbi_isolation_source: Invasive

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_assembly_name: Rumen uncultured genome RUG14900

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: soil

ncbi_organism_name: Nocardia flavorosea

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Psychrobacter sp. AOP7-B1-25

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: Ghent University


ncbi_country: Austria: National Park of Illmitz

ncbi_isolation_source: plant

ncbi_organism_name: Arthrobacter sp. CDRTa11

ncbi_submitter: AIT Austrian Institute of Technology GmbH


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_country: Italy

ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_strain_identifiers: BS 05

ncbi_submitter: Microbion SrL


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Fusobacterium sp.

ncbi_submitter: EMG


ncbi_country: Austria: Neusiedler See

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Agarivorans sp. 2_MG-2023

ncbi_submitter: Massachusetts Institute of Technology


gtdb_type_species_of_genus: t

ncbi_organism_name: Phocaeicola abscessus CCUG 55929

ncbi_refseq_category: reference genome

ncbi_submitter: ebi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola abscessus;x__Phocaeicola abscessus CCUG 55929


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: freshwater MAG --- Ki2-D2_bin-1447

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Adlerbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Adleribacteriota;x__unclassified Candidatus Adlerbacteria;s__Candidatus Adlerbacteria bacterium


ncbi_organism_name: uncultured Mycoplasma sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Brazil

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Acinetobacter pseudolwoffii

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_country: Switzerland

ncbi_isolation_source: porcine rectal swab

ncbi_organism_name: Chlamydia suis

ncbi_submitter: Functional Genomics Genter Zurich


ncbi_organism_name: Streptomyces sp. NPDC048109

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kerfeldiibacteriota;s__Candidatus Kerfeldbacteria bacterium CG15_BIG_FIL_POST_REV_8_21_14_020_45_12


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: OH

ncbi_isolation_source: placenta

ncbi_organism_name: Fusobacterium nucleatum YWH7054

ncbi_submitter: Han laboratory, Department of Periodontics, Case Western Reserve University


ncbi_organism_name: Thermodesulfovibrio yellowstonii

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Malaysia

ncbi_isolation_source: pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_country: Pakistan

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Nitrosomonas sp.


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Streptococcaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Actinophytocola sp.

ncbi_submitter: Zhejiang University


ncbi_country: Thailand: Phatthalung

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: USA: Hawaii

ncbi_isolate: NR

ncbi_organism_name: Candidatus Schneideria nysicola

ncbi_strain_identifiers: NR

ncbi_submitter: University of California Merced


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Croatia: Rovinj

ncbi_isolation_source: sponge

ncbi_organism_name: Rubrobacter aplysinae

ncbi_submitter: University of Wuerzburg


ncbi_country: China

ncbi_isolation_source: chicken meat

ncbi_organism_name: Aeromonas allosaccharophila

ncbi_submitter: China Agricultural University


ncbi_organism_name: Phocaeicola coprocola

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: United Kingdom

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Nitratifractor sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: beef

ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolate: Trichococcus ART11

ncbi_organism_name: Trichococcus shcherbakoviae

ncbi_strain_identifiers: Trichococcus ART11

ncbi_submitter: WAGENINGEN UNIVERSITY


ncbi_submitter: Zhejiang provincial center for disease control and prevention


ncbi_organism_name: [Clostridium] clostridioforme CAG:132


ncbi_country: Iraq: Camp Delta

ncbi_isolation_source: health care equipment surface

ncbi_organism_name: Acinetobacter sp. WC-323

ncbi_submitter: Walter Reed Army Institute of Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;x__unclassified Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter sp. WC-323


ncbi_country: Germany

ncbi_isolation_source: child

ncbi_organism_name: Escherichia coli DEC3F

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: [Clostridium] leptum

ncbi_submitter: EMG


ncbi_country: France

ncbi_isolation_source: cat wound

ncbi_organism_name: Clostridium tetani

ncbi_submitter: Aarhus University


ncbi_country: USA: Texas state

ncbi_submitter: Northern Arizona University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis;sb__Francisella tularensis subsp. novicida;x__Francisella tularensis subsp. novicida FSC159


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 19ft depth

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__candidate division Zixibacteria bacterium RBG_19FT_COMBO_42_43


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: BGI


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Malaysia: Kota Kinabalu Sabah

ncbi_isolation_source: Environment

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Biotechnology Research Institute


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Beijing University of Chemical Technology


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella sp. S128_05287


ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: Bacteroides ovatus


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of South Florida


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Blautia wexlerae


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Nonomuraea sp. NPDC050556

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: INDICASAT AIP


ncbi_organism_name: Salmonella sp. C3298

ncbi_submitter: Sichuan University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Pseudolysinimonas sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Enterococcus sp. DIV0086

ncbi_submitter: Broad Institute


ncbi_organism_name: Salmonella sp. 2020_760

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_submitter: Plant Pathology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas fragariae (ex Marin et al. 2024)


ncbi_organism_name: Bacillus cytotoxicus

ncbi_submitter: University of Padova


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_submitter: Instituto de Biomedicina de Sevilla (IBIS)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Pseudomonas sp. CJQ_3

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Rickettsia conorii subsp. raoultii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia conorii;sb__Rickettsia conorii subsp. raoultii


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with hylon

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Raoultella planticola


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- MJ-2014-D2_bin-0775

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_country: Denmark: Skive

ncbi_isolation_source: activated sludge from Skiv_18-Q3-R9-52

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Pseudoalteromonas carrageenovora

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_country: USA: MN

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Minnesota


ncbi_genome_category: derived from single cell

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Bigelow Laboratory For Ocean Sciences


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_organism_name: Hallerella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Agromyces allii

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_country: United Kingdom: London

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Bart's Health NHS Trust - The Royal London Hospital


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_country: South Korea

ncbi_isolation_source: water

ncbi_organism_name: Sphingomonas sp. SUN019

ncbi_submitter: Korea research institute of biotechnology bioscience


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Canada: Alberta

ncbi_isolation_source: Culture Media

ncbi_submitter: University of Alberta


ncbi_country: Belgium

ncbi_isolation_source: fecal incubation

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Corynebacterium sp.

ncbi_submitter: NIH/NHGRI


ncbi_country: Japan

ncbi_isolation_source: stool

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_country: Japan: Hyogo Harima Campus for Science; Univrersity of Hyogo

ncbi_isolation_source: soil

ncbi_organism_name: Calothrix sp. HK-06

ncbi_submitter: Xuefeng LU


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_submitter: Monash University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Khon Kaen University


ncbi_isolate: donor

ncbi_isolation_source: laboratory host culture originally created with individuals collected from field (Yarra Valley; Victoria; Australia) in April 2019

ncbi_organism_name: Wolbachia pipientis

ncbi_strain_identifiers: donor

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Lindowiibacteriota;x__unclassified Candidatus Lindowiibacteriota;s__Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27


ncbi_isolation_source: Freshwater pond

ncbi_organism_name: Fictibacillus sp. 7GRE50

ncbi_submitter: KU Leuven


ncbi_country: USA: Georgia

ncbi_isolation_source: Chicken processing plant

ncbi_submitter: Texas Tech University


ncbi_country: Nigeria

ncbi_isolation_source: Blood culture

ncbi_organism_name: Pseudomonas putida


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Enorma sp.


ncbi_country: USA

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: caecum

ncbi_organism_name: Lachnoclostridium sp. An181

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Veillonellaceae bacterium AF54-6pH5A

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Pseudoalteromonas marina

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Brazil: Limeira

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Switzerland

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Bern


ncbi_country: China

ncbi_isolation_source: feces

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: China: Hainan Island

ncbi_organism_name: Vibrio sp. SCSIO 43009

ncbi_strain_identifiers: SCSIO 43009

ncbi_submitter: South China Sea Institute of Oceanology,Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__unclassified Vibrio;s__Vibrio sp. SCSIO 43009


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Bangladesh: Dhaka

ncbi_submitter: Cardiff University


ncbi_isolation_source: soil

ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: uncultured Thermoleophilaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Brazil

ncbi_isolation_source: pecked egg caecum

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Antarctica: Western Antarctica; Lagoon Island

ncbi_isolate: LAG bin20

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: LAG bin20

ncbi_submitter: Monash University


ncbi_country: China: Changsha

ncbi_organism_name: Streptomyces sp. CdTB01

ncbi_submitter: Hunan Agricultural University


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Candidatus Krakonobacterium acarorum

ncbi_submitter: Czech Science Foundation


ncbi_country: Viet Nam

ncbi_organism_name: Paenibacillus vietnamensis

ncbi_submitter: Phenikaa University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_country: China: Guangzhou

ncbi_isolation_source: chancre

ncbi_organism_name: Treponema pallidum subsp. pallidum

ncbi_submitter: Southern Medical University


ncbi_country: Honduras

ncbi_isolation_source: root nodules

ncbi_organism_name: Bradyrhizobium jicamae

ncbi_submitter: UPM


ncbi_organism_name: Borreliella californiensis

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Czech Republic: Praha

ncbi_isolation_source: Vagina

ncbi_organism_name: Acinetobacter gyllenbergii NIPH 230

ncbi_strain_identifiers: NIPH 230

ncbi_submitter: Broad Institute


ncbi_submitter: Korea Polar Research Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__Candidatus Methylomirabilaceae;g__Candidatus Methylomirabilis;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__Candidatus Methylomirabilaceae;g__Candidatus Methylomirabilis;x__environmental samples;s__uncultured Candidatus Methylomirabilis sp.


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Bartonella tribocorum

ncbi_submitter: Unite de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE) CNRS, Faculte de Medecine, Universite de la Mediterranee, Marseille, France


ncbi_country: USA

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: USA: Trunk River; Woods Hole; Massachusetts

ncbi_isolation_source: microbial mat from estuary

ncbi_organism_name: Rhodovulum sulfidophilum

ncbi_submitter: Department of Biology, Washington University in St. Louis


ncbi_organism_name: Chlamydia psittaci

ncbi_submitter: Pneumonia Response and Surveillance Laboratory (CDC)


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Ileibacterium sp.

ncbi_submitter: NIH/NHGRI


ncbi_country: USA: MD

ncbi_isolation_source: Turkey

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: USA: IL

ncbi_isolation_source: root

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Russia: Siberia

ncbi_organism_name: Nitriliruptor alkaliphilus DSM 45188

ncbi_submitter: JGI


ncbi_isolation_source: Mississippi River

ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: Ohio State university


ncbi_isolation_source: pet food (BARF)

ncbi_organism_name: Vagococcus lutrae

ncbi_submitter: University of Zurich


ncbi_country: China: Guangdong

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Netherlands

ncbi_organism_name: Coxiella burnetii

ncbi_submitter: Central Veterinary Institute part of Wageningen UR


ncbi_organism_name: Faecousia sp.


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_isolation_source: colon epithelium

ncbi_submitter: University of Nebraska - Lincoln


ncbi_organism_name: Bacillus glycinifermentans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_assembly_name: Klebsiella pneumoniae 7EL

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: Klebsiella pneumoniae 7EL

ncbi_submitter: Klebsiella pneumoniae 7EL


ncbi_country: China

ncbi_isolation_source: drainage fluid

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: South Africa

ncbi_isolation_source: Blood culture

ncbi_submitter: National Institute for Communicable Disease


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp. AM12-48

ncbi_submitter: BGI


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_assembly_name: Rumen uncultured genome RUG13541

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. PDM33

ncbi_submitter: University of Chicago


ncbi_country: New Zealand

ncbi_organism_name: Campylobacter lari

ncbi_submitter: Massey University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: spoiled apple cider

ncbi_organism_name: Zymomonas mobilis subsp. mobilis

ncbi_strain_identifiers: NRRL B-1960

ncbi_submitter: Clark University


ncbi_isolation_source: groundwater

ncbi_organism_name: Holosporales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Anaerostipes butyraticus

ncbi_submitter: Department of Food, Aroma and Cosmetic Chemistry, Faculty of Bioindustry, Tokyo University of Agriculture


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Geneva University Hospitals


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: France: Paris

ncbi_isolation_source: midstream urine

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: aphp


ncbi_country: Brazil

ncbi_isolation_source: spinal cord (Bos taurus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: USA: Ohio

ncbi_organism_name: Bacillus anthracis

ncbi_strain_identifiers: Ohio ACB

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: China: Futian

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy: d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Korobacter;s__Candidatus Korobacter versatilis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Korobacter;s__Candidatus Korobacter versatilis;x__Candidatus Koribacter versatilis Ellin345


ncbi_country: Russia: Moscow

ncbi_isolation_source: bronchoalveolar lavage (BAL)

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: USA

ncbi_submitter: FDA/CFSAN


ncbi_country: Viet Nam

ncbi_isolation_source: Esomus Swaison; Whole Frozen Raw

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000187


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Universita' degli Studi di Milano


ncbi_country: Canada

ncbi_isolation_source: environmental watersal

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Trenton; NJ

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Broad Institute


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: University of Queensland


ncbi_organism_name: Syntrophorhabdaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_organism_name: Geopsychrobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Singapore

ncbi_isolation_source: feces

ncbi_organism_name: Duncaniella sp. C9

ncbi_submitter: Temasek Life Sciences Laboratory Limited


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Parabacteroides merdae


ncbi_country: New Zealand: Te Puke; Bay of Plenty

ncbi_submitter: The New Zealand Institute for Plant & Food Research Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae;x__Pseudomonas syringae pv. actinidiae ICMP 19100


ncbi_isolation_source: blood from patient with bacteremia

ncbi_submitter: University of Washington


ncbi_isolation_source: environmental waters

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Wyoming


ncbi_country: China

ncbi_isolation_source: ticks

ncbi_organism_name: Borreliella garinii NMJW1

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Harvard Medical School


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: James Cook University


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: United Kingdom

ncbi_isolation_source: Throat swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_isolation_source: Faeces


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: Stockholm University


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Shigella boydii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli 2-210-07_S4_C1

ncbi_submitter: IGS


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Shallow soil patches nearby Vellozia epidendroides specimens

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: Kenya: Nairobi

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Makerere University


ncbi_country: USA: California

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter sp. HS011

ncbi_submitter: San Diego State University


ncbi_organism_name: uncultured Pumilibacteraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: USA

ncbi_isolation_source: nasal swab

ncbi_organism_name: Corynebacterium pseudodiphtheriticum

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_isolate: Urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR 1137 IAME


ncbi_country: United Kingdom: Hatchlands

ncbi_isolation_source: Oak rhizosphere soil

ncbi_organism_name: Scandinavium manionii

ncbi_submitter: UWE


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T39105

ncbi_submitter: Broad Institute


ncbi_organism_name: Shewanella indica

ncbi_submitter: Soochow University


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine sediment from Northwestern African Upwelling Area

ncbi_organism_name: Ruegeria atlantica

ncbi_strain_identifiers: CECT 4292

ncbi_submitter: UVEG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: United Kingdom:Wales

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_country: Chile: Lilihuapi Island; Comau fjord; X Region

ncbi_isolation_source: marine sediment

ncbi_organism_name: Rhodococcus sp. H-CA8f

ncbi_submitter: Centro de Biotecnologia Daniel Alkalay Lowitt Universidad Tecnica Federico Santa Maria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. H-CA8f


ncbi_strain_identifiers: BGSS

ncbi_submitter: University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;g__Candidatus Palibaumannia;s__Candidatus Palibaumannia cicadellinicola


ncbi_country: China: East China Sea

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_submitter: Harbin Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. salamae;x__Salmonella enterica subsp. salamae serovar 42:f,g,t:--


ncbi_country: USA: Alabama

ncbi_isolation_source: rhizosphere sample

ncbi_organism_name: Chryseobacterium contaminans

ncbi_submitter: Korea University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: India

ncbi_isolation_source: eye

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The University of New South Wales


ncbi_country: Netherlands: Rijn bij Lobith

ncbi_isolation_source: water

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni LMG 23357


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Escherichia coli

ncbi_submitter: Affiliated Hospital of Jining Medical University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Streptococcus sp.


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal


ncbi_organism_name: Enterobacter sp. FUJ80071

ncbi_submitter: Fujita Health University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Pseudomonas trivialis

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_isolation_source: Chicken product

ncbi_submitter: University of Maryland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_country: Japan:Shimane; Matsue; Shimane University

ncbi_isolation_source: arable soil

ncbi_organism_name: Bradyrhizobium sp. RD5-C2

ncbi_submitter: Laboratory of Microbial Ecology, Institute of Environmental Systems Science, Shimane University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affliated Hospital of Kunming Medical University


ncbi_country: France

ncbi_isolation_source: clinical sample

ncbi_submitter: Universite Paris-Sud


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Streptomyces althioticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Citrobacter pasteurii

ncbi_strain_identifiers: FDAARGOS 1424

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The Second Affiliated Hospital & Yuying Children's Hospital of Wenzhou Medical University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Xiamen University


ncbi_country: Colombia

ncbi_isolation_source: Soi

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CAU Kiel


ncbi_organism_name: Segatella copri

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: USA: Texas

ncbi_isolation_source: nasal wash

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_country: USA: MD

ncbi_isolation_source: Commercial dietary supplements

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: USFDA


ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: Nimes University Hospital


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Jorgensenbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Joergenseniibacteriota;x__unclassified Candidatus Jorgensenbacteria;s__Candidatus Jorgensenbacteria bacterium


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Institut Pasteur


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Limosilactobacillus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: University of Sheffield


ncbi_country: Kuwait

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Victivallaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: [Kitasatospora] papulosa

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas donghuensis

ncbi_submitter: faculty of agriculture, university of belgrade


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Antwerp


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Candidatus Pseudothioglobus sp.

ncbi_submitter: University of Pretoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Pseudothioglobus;x__unclassified Candidatus Pseudothioglobus;s__Candidatus Pseudothioglobus sp.


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University Hospital Puerta del Mar


ncbi_organism_name: Salmonella sp. NW859

ncbi_submitter: Sichuan University


ncbi_organism_name: Salmonella sp. C3199


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KYUNGPOOK NATIONAL UNIVERSITY


ncbi_organism_name: Wolbachia endosymbiont of Cantharis cryptica

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Ignavibacteria bacterium


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Gemmatimonadales bacterium UBA6960

ncbi_submitter: concordia university


ncbi_organism_name: Bacillus sp. YIM B13602

ncbi_submitter: Yunnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. YIM B13602


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Institut Pasteur of Madagascar


ncbi_organism_name: Blautia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Roseovarius maritimus

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Bifidobacterium bifidum


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Wits University


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Stony Brook University


ncbi_country: USA: Kingston Bay; MA

ncbi_isolation_source: gill tissue

ncbi_organism_name: Solemya velum gill symbiont

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;s__Solemya velum gill symbiont


ncbi_submitter: EPFL


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: metagenome

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Dalian

ncbi_organism_name: Paracoccus sp. SSJ

ncbi_strain_identifiers: SSJ

ncbi_submitter: Dalian University of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. SSJ


ncbi_country: Czech Republic: Pribram

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter higginsii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: Rumen uncultured genome RUG14006

ncbi_isolation_source: cattle rumen


ncbi_country: USA: WI

ncbi_isolation_source: Skin/Wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Wisconsin State Laboratory of Hygiene


ncbi_submitter: Quadram Institutte


ncbi_country: China: Yantai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yuhuangding hospital


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Padova


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: Portland State University


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: University of Alberta


ncbi_organism_name: Candidatus Alistipes avistercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Egypt: Wadi Natrun

ncbi_isolation_source: saline lake

ncbi_organism_name: Ectothiorhodospira haloalkaliphila

ncbi_submitter: Bellevue University


ncbi_organism_name: Pseudomonas sp. 2024-64

ncbi_submitter: Instituto Nacional de Rehabilitacion


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: China: Chengdu

ncbi_submitter: Henan Agricultural University


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: New York

ncbi_isolation_source: Humidifier basin

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: California; Pasadena; JPL; Building 179

ncbi_isolation_source: cleanroom floor

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Finland

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Alcanivorax profundi

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Brazil: Eastern Amazon

ncbi_isolation_source: pasture soil

ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: University of Sao Paulo


ncbi_submitter: Sichuan University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: Canada: Toronto

ncbi_isolation_source: gut

ncbi_organism_name: Muribaculum sp. NM65_B17

ncbi_submitter: University of Toronto


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Proximal colon


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken farm

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: sichuan university


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pseudoalteromonas sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: China: Tianshan No. 1 Glacier

ncbi_isolation_source: permafrost

ncbi_organism_name: Arthrobacter alpinus

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Spain

ncbi_organism_name: Mycoplasma mycoides subsp. capri

ncbi_submitter: University of Bern

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma mycoides;sb__Mycoplasma mycoides subsp. capri


ncbi_isolation_source: to be completed

ncbi_organism_name: uncultured Stenotrophomonas sp.

ncbi_submitter: Genoscope CEA


ncbi_country: South Africa: Ethekwini district; KwaZulu-Natal

ncbi_isolation_source: rectal swab

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: France

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: ANSES


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: Cambodia: Phnom Penh

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Tuscaloosa; AL

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Broad Institute


ncbi_assembly_name: Rumen uncultured genome RUG10993

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: University of British Columbia


ncbi_country: China: Hunan Chenzhou

ncbi_isolation_source: leaf

ncbi_organism_name: Sphingobacterium sp. CZ-2

ncbi_submitter: Hunan Agricultural University


ncbi_organism_name: Alistipes inops

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Anterior Nose

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: The University of Queensland


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 106

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_strain_identifiers: SNUC 220

ncbi_submitter: University of Calgary


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Polyangiaceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Halorhodospira halochloris

ncbi_submitter: Environment and Life Sciences, Toyohashi University of Technology


ncbi_organism_name: uncultured Staphylococcus sp.


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: bioreactor

ncbi_organism_name: Dehalococcoides mccartyi

ncbi_submitter: University of Queensland


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Prevotella sp.

ncbi_submitter: University of California, Berkeley


ncbi_isolate: metabat2_pooled_hifiasm.1051 MAG

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_strain_identifiers: metabat2_pooled_hifiasm.1051 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Microgenomates bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Microgenomatota;x__unclassified Candidatus Microgenomates;s__Candidatus Microgenomates bacterium


ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Urophora cardui


ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Shanghai

ncbi_isolation_source: urban industrial factory reactor residue

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Fudan University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Plesiomonas sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Flexilinea sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_country: State of Palestine

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Pyrinomonadaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oribacterium sp.

ncbi_submitter: EMG


ncbi_country: USA:Carmel Valley; CA

ncbi_isolation_source: isolated from a burrow of Otospermophilus beecheyi

ncbi_organism_name: Borrelia parkeri HR1

ncbi_submitter: University of California Irvine


ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Sphingomonas sp. Root1294

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridium saccharobutylicum

ncbi_strain_identifiers: NCP 195

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_organism_name: Segatella copri

ncbi_submitter: Research Institute for Microbial Diseases, Osaka University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Ornithinimicrobium sp. Y1847

ncbi_submitter: Shanxi Medical University


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Bradyrhizobium sp. ORS 375

ncbi_submitter: CEA IG Genoscope


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: uncultured Tannerella sp.


ncbi_country: USA: MD

ncbi_isolation_source: chicken breast

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA


ncbi_organism_name: uncultured Anaerotignum sp.


ncbi_country: Mali: Koulikoro

ncbi_isolation_source: stool sample

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_strain_identifiers: STEC 2505

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Indiana

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Faculty of Pharmacy of the University of Porto


ncbi_organism_name: Collinsella intestinalis

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: CHU Bicetre


ncbi_organism_name: Campylobacter sp. 4

ncbi_submitter: University of California at Davis


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Dysosmobacter welbionis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-2439

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Leptolyngbya sp. PL-A2

ncbi_submitter: Institute of Hydrobiology


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella sp. S003_53800


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Chromatiaceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: Synechococcaceae cyanobacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: NC

ncbi_isolation_source: Clinical Isolate

ncbi_organism_name: Acinetobacter sp. FDAARGOS_541

ncbi_submitter: US Food and Drug Administration


ncbi_country: China: Anhui

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Estonia: Harjumaa

ncbi_isolation_source: caecal content

ncbi_organism_name: Enterococcus faecium


ncbi_country: China: Jiangsu

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Lelliottia amnigena

ncbi_strain_identifiers: FDAARGOS 1446


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: China: Guangdong

ncbi_isolation_source: Guangdong; China

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_country: Japan

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Nagoya University


ncbi_country: Germany

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: sulfidic marine water cellulose enrichment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Royal Netherlands Institute for Sea Research


ncbi_isolation_source: nodule

ncbi_organism_name: Bradyrhizobium embrapense

ncbi_strain_identifiers: SEMIA 6208

ncbi_submitter: Embrapa Soja


ncbi_organism_name: Streptomyces acidiscabies

ncbi_strain_identifiers: NCPPB 4445

ncbi_submitter: University of Exeter


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: rock sample from hydrothermal vent

ncbi_organism_name: Sedimenticola thiotaurini

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Jilin

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Coxiella burnetii

ncbi_submitter: ANIMAL HEALTH AND VETERINARY LABORATORIES AGENCY


ncbi_country: United Kingdom

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudolactococcus raffinolactis

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Parolsenella catena


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Shigella flexneri

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Switzerland

ncbi_isolation_source: lamb

ncbi_organism_name: Clostridium estertheticum

ncbi_submitter: University of Zurich


ncbi_country: Canada: Quebec; Caron Lake

ncbi_isolation_source: non-axenic culture from freshwater

ncbi_submitter: Universite de Montreal


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Enterococcus aquimarinus


ncbi_organism_name: Streptomyces sp. NPDC095614

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: North-west University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Serratia nevei

ncbi_submitter: Monash University


ncbi_country: Russia

ncbi_isolation_source: 3rd dilution order of 4-month-old decomposing pine tree sawdust

ncbi_organism_name: Pseudoxanthomonas sp.

ncbi_submitter: ARRIAM


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: blood

ncbi_submitter: Zhejiang University


ncbi_assembly_name: IMG-taxon 2615840711 annotated assembly

ncbi_organism_name: Myroides marinus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Canada: Lacombe

ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Sweden

ncbi_isolation_source: GI tract

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: ATCC 5870

ncbi_submitter: Wageningen University and Research


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Corynebacterium simulans

ncbi_submitter: Loyola University Chicago


ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Brazil: Anavilhanas; AM

ncbi_isolation_source: Atta sp.fungus garden

ncbi_organism_name: Burkholderia sp. Ax-1719

ncbi_submitter: UW-Madison


ncbi_assembly_name: freshwater MAG --- Day2-4_bin-214

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Canada: North Alberta

ncbi_isolation_source: Suncor tailing pond sample

ncbi_organism_name: bacterium UBP1_UBA4771

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__unclassified Bacteria candidate phyla;s__bacterium UBP1_UBA4771


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Rakuno Gakuen University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Escherichia sp. WS1212

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Sphingomonas flavalba

ncbi_submitter: Nakdonggang National Institute of Biological Resources


ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: Iowa State University


ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: University College Cork


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Eubacteriales bacterium


ncbi_organism_name: Anaerostipes hadrus


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Hungary: Szeged biogas plant

ncbi_isolation_source: Anaerobic sludge from Szeged Biogas Plant

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Szeged


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Cellvibrio sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: CA

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Opitutia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Gemella haemolysans

ncbi_submitter: University of California, Berkeley


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: urine

ncbi_organism_name: Leptospira interrogans serovar Canicola

ncbi_submitter: Universidade Federal de Pelotas


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Azoarcus sp.

ncbi_submitter: University of Calgary


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Spain: Amadorio reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Cyanobium sp. A1C-AMD

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_country: France

ncbi_isolation_source: water

ncbi_organism_name: Leptospira meyeri

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_country: Belize: Carrie Bow Cay Field Station

ncbi_isolation_source: coral mucus

ncbi_organism_name: Glaciecola sp. UBA2563

ncbi_submitter: University of Queensland


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Streptomyces massasporeus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterobacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_country: Germany

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: WTSI


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Microbacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Nocardia sp. NPDC056100


ncbi_country: Australia: Brisbane

ncbi_isolation_source: sputum of adult cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_assembly_name: IMG-taxon 2599185195 annotated assembly

ncbi_organism_name: Geodermatophilus amargosae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: New Zealand: Wai-iti river; Nelson

ncbi_isolation_source: freshwater Microcoleus biofilm

ncbi_submitter: University of Auckland


ncbi_country: Netherlands

ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen Plant Research


ncbi_country: Australia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Technology, Sydney


ncbi_country: Bangladesh

ncbi_organism_name: Bacteroides fragilis str. DS-71

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides fragilis;x__Bacteroides fragilis str. DS-71


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Modestobacter sp. NPDC013298

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Ildong Pharmaceutical


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Gemella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Slovenia

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National laboratory for health, environment and food


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Spain

ncbi_submitter: Universidad Complutense de Madrid


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: Brooks

ncbi_isolation_source: Cattle feces

ncbi_submitter: LETHBRIDGE RESEARCH CENTRE


ncbi_submitter: Jiangxi Academy of Agricultural Sciences


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Flavobacterium haoranii

ncbi_submitter: Environmental Microbiology Lab


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Kerstersia gyiorum

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: freshwater MAG --- LJ-7-9m_bin-0749

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: France: Hautes-Pyrenees

ncbi_isolation_source: Poultry farm avifauna

ncbi_organism_name: Mycoplasma sp. E35C

ncbi_submitter: Ecole Nationale Veterinaire de Toulouse


ncbi_organism_name: uncultured Rikenella sp.


ncbi_isolation_source: liver

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: Gemella massiliensis

ncbi_submitter: URMITE


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Kenya Medical Research Institute


ncbi_country: Atlantic Ocean: Northern Atlantic Ocean

ncbi_isolation_source: ocean water

ncbi_submitter: Uppsala University


ncbi_country: Australia: WA

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_country: Brazil

ncbi_isolation_source: mesenteric lymph node (Sus scrofa domesticus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Argentina: Victoria

ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: Streptococcus parasuis


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Chromatiaceae bacterium

ncbi_submitter: European Institute of the Sea (IUEM) - France


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Quisquiliibacterium sp.

ncbi_submitter: Stanford University


ncbi_assembly_name: Rumen uncultured genome RUG323

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Malaysia

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrosomonadales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Slovenia: Piran; Adriatic Sea; Gulf of Piran

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: China

ncbi_isolation_source: Respiratory swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: Switzerland

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: Universidade Federal de Sao Carlos - UFSCar

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: HeBei

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Jyvaskyla


ncbi_country: Chile: Santiago

ncbi_isolation_source: urine

ncbi_submitter: Universidad del desarrollo


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Inha University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: single cell amplified by MDA; feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Haruko Takeyama Lab., Waseda University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Acinetobacter proteolyticus

ncbi_submitter: Guangxi University


ncbi_organism_name: Stenotrophomonas sp. TWI1183

ncbi_submitter: University of Technology Sydney


ncbi_isolation_source: Nasal

ncbi_submitter: SC


ncbi_country: China: Shandong

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: nodules

ncbi_organism_name: Mesorhizobium sp. B264B1B

ncbi_submitter: Curtin University


ncbi_country: Austria: Pichlinger See

ncbi_isolation_source: freshwater

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_country: China: Shenzhen

ncbi_isolation_source: vagina swab from a perinatal mother

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Hunter College of City University of New York


ncbi_country: Pakistan

ncbi_isolation_source: bedside rail in hospital intensive care unit

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_country: Thailand: Ubon

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Panama: Bocas del Toro

ncbi_isolation_source: gills

ncbi_organism_name: Candidatus Thiodiazotropha taylori

ncbi_submitter: University of California, Davis


ncbi_country: Kenya: Nairobi

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: USAMRD


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Monash Unversity


ncbi_country: USA: Tennessee;Knoxville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Erysipelothrix sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Mycoplasma imitans ATCC 51306

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;o__Mycoplasmoidales;f__Mycoplasmoidaceae;g__Mycoplasmoides;s__[Mycoplasma] imitans;x__Mycoplasma imitans ATCC 51306


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Wastewater effluent sample

ncbi_organism_name: Citrobacter sp. RHBSTW-00229

ncbi_submitter: The REHAB Consortium


ncbi_country: Canada: Guelph

ncbi_isolation_source: Dry seeds

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Guelph


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7173

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Japan: Kyoto

ncbi_isolation_source: Venous blood isolated from host

ncbi_submitter: Department of Microbiology, Graduate School of Medicine, Kyoto University


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: FDA/CDC


ncbi_country: Brazil

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV145

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimicrobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Mycoplasmopsis arginini

ncbi_submitter: Insititute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophica bacterium CG_4_10_14_0_2_um_filter_44_9


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Kansas State University