ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D2_bin-0734

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Parafilimonas sp.

ncbi_submitter: BILS


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: China

ncbi_genome_representation: full

ncbi_isolation_source: freshwater

ncbi_organism_name: Nostoc flagelliforme FACHB-838

ncbi_submitter: South China Normal University


ncbi_genome_category: derived from metagenome

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_assembly_level: Scaffold

ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium GW2011_GWE2_35_2-


gtdb_representative: f

ncbi_organism_name: Liquorilactobacillus nagelii

ncbi_submitter: University of Verona


ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: China: Hunan; Huangshaping

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_submitter: Zhejiang University


ncbi_organism_name: Fusobacterium mortiferum

ncbi_submitter: Center for Gut Microbiome and Nutrition Research, Washington University School of Medicine


ncbi_organism_name: Streptomyces olivoreticuli

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: USA: NY; New York City

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_submitter: JCVI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Pseudomonas kulmbachensis

ncbi_submitter: Center for Biotechnology, Bielefeld University

ncbi_type_material_designation: assembly from type material


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_assembly_level: Complete Genome

ncbi_country: Peru: Puno region village in Peruvian Andes

ncbi_isolation_source: Amerindian gastritis patient

ncbi_organism_name: Helicobacter pylori Puno135

ncbi_submitter: Washington University Medical School


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Germany

ncbi_submitter: University Hospital Muenster


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Max planck institute for marine microbiology


ncbi_country: Spain: Palencia

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Swedish Defence Research Agency (FOI)


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: WHRI 8339

ncbi_submitter: University of Exeter


ncbi_country: Switzerland

ncbi_submitter: University of Lausanne


ncbi_country: USA: Iowa

ncbi_strain_identifiers: MN 7

ncbi_submitter: USDA-ARS


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_country: Canada: L Assomption

ncbi_isolation_source: sandy soil contaminated with hydrocarbons for 50 years

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Intestinibacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_country: USA: Michigan

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Case Western Reserve University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Raoultella terrigena

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_isolation_source: human gut


ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: nivip

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_isolation_source: liquor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SRCAMB


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: SC


ncbi_organism_name: uncultured Campylobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Nanning

ncbi_isolation_source: wastewater of a cassava starch factory

ncbi_organism_name: Tumebacillus flagellatus

ncbi_refseq_category: reference genome

ncbi_submitter: National Engineering Research Center for non-food Biorefinery


ncbi_country: Slovenia: Marine Biology Station Piran

ncbi_organism_name: Caldilineaceae bacterium bin34

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_isolation_source: Foregut Rimicaris exoculata metagenome

ncbi_organism_name: uncultured Mycoplasmataceae bacterium

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_submitter: University of Galway


ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_country: Belgium


ncbi_country: USA: International Space Station

ncbi_isolation_source: Mineral Grit embedded in adhesive paper 3

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Campylobacter canis

ncbi_submitter: Universidad Austral de Chile


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Reyranella sp.

ncbi_submitter: Zhejiang University


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Candidatus Peribacteraceae bacterium

ncbi_taxonomy: d__Bacteria;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;x__Candidatus Peribacteraceae;x__unclassified Candidatus Peribacteraceae;s__Candidatus Peribacteraceae bacterium


ncbi_country: China: Guangzhou

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Traditional Chinese medicine University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab


ncbi_country: USA

ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Icahn School of Medicine


ncbi_country: Canada: Lacombe

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: Sil NS 29

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_submitter: Shanghai General Hospital


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad del Desarrollo


ncbi_country: USA: Metropolitan Atlanta

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae GA58771

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Streptococcus sp. Marseille-Q6488

ncbi_submitter: IHU - Mediterranee Infection


ncbi_country: China: Zhangye

ncbi_isolation_source: nodule of wild Astragalus chrysopterus

ncbi_organism_name: Nocardioides astragali

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium sp. MSK218

ncbi_submitter: Duke University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Sichuan province

ncbi_isolation_source: nasopharyngeal swabs

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_assembly_level: Chromosome

ncbi_organism_name: Algoriphagus machipongonensis

ncbi_submitter: Gordon and Betty Moore Foundation Microbial Genome Sequencing Project


ncbi_isolation_source: water

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: NASA Ames Research Center


ncbi_isolation_source: Symbiodiniaceae culture

ncbi_organism_name: Mameliella sp. MMSF_3455

ncbi_submitter: The University of Melbourne


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_assembly_name: freshwater MAG --- MJ110927B_bin-397

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Nanjing University


ncbi_organism_name: Bacillus wiedmannii

ncbi_strain_identifiers: INRA Bc05-F1

ncbi_submitter: INRA-MIG


ncbi_country: Saint Kitts and Nevis: Saint Kitts; Basseterre

ncbi_isolation_source: skin lesion from farm animal

ncbi_organism_name: Dermatophilus congolensis

ncbi_submitter: Ross University School of Veterinary Medicine


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: Indian Ocean

ncbi_organism_name: Pseudoalteromonas sp. GABNS16G

ncbi_submitter: Michigan Technological University


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of Duisburg Essen


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Mageeibacillus sp. UBA4941

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_organism_name: Methylobacterium sp. NPDC097299

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Atlantic Ocean: Norwegian Sea; Faavne vent field NE area of North Tower vent

ncbi_isolation_source: biosyringe of microbial iron mat on a black smoker

ncbi_organism_name: Robiginitomaculum sp.

ncbi_submitter: University of Bergen


ncbi_country: Kenya

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1338

ncbi_submitter: Broad Institute


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: Switzerland: Geneva

ncbi_isolation_source: sewage

ncbi_organism_name: Bradyrhizobium elkanii

ncbi_submitter: University of Applied Sciences of Western Switzerland hepia


ncbi_organism_name: Agrobacterium rubi

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Thailand: Ubon

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Kunming

ncbi_isolation_source: gut

ncbi_organism_name: Lactobacillus apis

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Selenomonas sp.


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: FL

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Camptogramma bilineatum


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aga Khan University, Nairobi


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef sponge

ncbi_organism_name: Mariniblastus sp.

ncbi_submitter: James Cook University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Italy: Luras; Sardinia

ncbi_organism_name: Rhizobium sp. WSM4643

ncbi_submitter: Murdoch University


ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: Guangxi University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Georgia


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Acidulodesulfobacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acidulodesulfobacterium;x__unclassified Candidatus Acidulodesulfobacterium;s__Candidatus Acidulodesulfobacterium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Parma


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 326

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_strain_identifiers: SNUC 5782

ncbi_submitter: University of Calgary


ncbi_country: USA: Park City; UT

ncbi_isolation_source: enrichment culture of hot tap water

ncbi_organism_name: Thermus scotoductus

ncbi_submitter: Penn State University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_organism_name: Pseudochelatococcus lubricantis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Deferrimicrobium sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Deferrimicrobiota;c__Candidatus Deferrimicrobia;o__Candidatus Deferrimicrobiales;f__Candidatus Deferrimicrobiaceae;g__Candidatus Deferrimicrobium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Deferrimicrobiota;c__Candidatus Deferrimicrobia;o__Candidatus Deferrimicrobiales;f__Candidatus Deferrimicrobiaceae;g__Candidatus Deferrimicrobium;x__unclassified Candidatus Deferrimicrobium;s__Candidatus Deferrimicrobium sp.


ncbi_organism_name: Acidobacteriaceae bacterium


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_submitter: University of Amsterdam


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Oregon State University


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Bifidobacterium pseudocatenulatum


ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Levyella massiliensis

ncbi_submitter: Guizhou Medical University


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_submitter: DS-I Africa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Acidaminococcus fermentans


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: Faculty of Veterinary Medicine, Chiang Mai University


ncbi_isolate: isolate

ncbi_strain_identifiers: isolate

ncbi_submitter: Indian Biological Data Centre


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Chitinophagaceae bacterium


ncbi_organism_name: Tepidanaerobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: EPFL


ncbi_country: USA: San Fransisco

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_assembly_name: JGI assembly

ncbi_organism_name: Candidatus Chryseopegocella kryptomonas

ncbi_submitter: DOE - Joint Genome Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Kryptoniota;c__;o__;f__;g__Candidatus Chryseopegocella;s__Candidatus Chryseopegocella kryptomonas

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Kryptoniota;g__Candidatus Chryseopegocella;s__Candidatus Chryseopegocella kryptomonas


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Oswaldo Cruz Institute


ncbi_country: Germany

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Robert Koch Institute


ncbi_isolation_source: vegetable

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: South China Agricultural University


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D2_bin-1126

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 3.0 m mixolimnion layer of meromictic lake

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Academia Sinica


ncbi_country: South Korea: Daegu

ncbi_organism_name: Parabacteroides sp. Y3-G-102

ncbi_submitter: Kyungpook National University School of Medicine


ncbi_country: South Korea

ncbi_organism_name: Nocardioides insulae DSM 17944

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: USA

ncbi_isolation_source: Respiratory

ncbi_strain_identifiers: MRSA


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University People's Hospital


ncbi_country: Pacific Ocean: Station ALOHA

ncbi_isolation_source: Trichodesmium-associated heterocystous diazotroph (hetDA) enrichment; trichodesmium colony originally collected aboard the R/V Kilo Moana (KM10-13) near Station ALOHA

ncbi_organism_name: Devosiaceae bacterium MH13

ncbi_submitter: University of Southern California


ncbi_organism_name: Xanthomonas oryzae

ncbi_strain_identifiers: Xoc GD41

ncbi_submitter: Shandong Agricultural University


ncbi_country: Hungary: Budapest

ncbi_submitter: Semmelweis University


ncbi_country: Poland: Bialowieza National Park

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: University of Bialystok


ncbi_country: India

ncbi_isolation_source: Deep sea sediment

ncbi_organism_name: Pseudovibrio exalbescens

ncbi_strain_identifiers: COD 22

ncbi_submitter: National Institute of Ocean Technology


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: Viet Nam

ncbi_isolation_source: food

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Vietnam-Russia Tropical Center


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: USA: Atlantic Beach; North Carolina

ncbi_isolation_source: Ovicells

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;x__unclassified PVC group;s__PVC group bacterium (ex Bugula neritina AB1)


ncbi_country: Papua New Guinea

ncbi_isolation_source: environmental sample

ncbi_organism_name: Burkholderia pseudomallei A79C

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: Sacrum

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Denmark

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Nigeria

ncbi_isolation_source: Blood culture

ncbi_organism_name: Serratia ureilytica


ncbi_country: Brazil

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Micromonospora sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Flavobacteriaceae bacterium UBA3200

ncbi_submitter: University of Queensland


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_country: Germany

ncbi_isolation_source: surface of air humidifier

ncbi_organism_name: Sphingomonas pseudosanguinis

ncbi_submitter: Indigo Agriculture


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Streptomyces africanus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: clinical

ncbi_submitter: University of Cologne


ncbi_isolation_source: penguin feces

ncbi_organism_name: Providencia heimbachae ATCC 35613

ncbi_submitter: UW-GEL (University of Wisconsin - Genome Evolution Laboratory)


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_isolation_source: gastric biopsies

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_country: China

ncbi_isolation_source: mud of the Nanhai Sea

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Nanjing agriculture university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_organism_name: Escherichia coli

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Paracoccaceae bacterium


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Bristol

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Tagaea sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Friedrich Schiller University Jena


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_country: Thailand

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: UHT-milk

ncbi_organism_name: Heyndrickxia sporothermodurans

ncbi_submitter: Max Rubner-Institut


ncbi_country: USA

ncbi_isolation_source: soil

ncbi_organism_name: Pseudoxanthomonas sp. PXM02

ncbi_submitter: University of Chicago


ncbi_isolation_source: Freshwater lake


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Chloroflexales bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: UNIVERSIDADE CEUMA


ncbi_organism_name: Cryobacterium sp. CAN_C2

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Tongji University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Escherichia coli


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Mycoplasmatota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Flavobacteriales bacterium UBA2423

ncbi_submitter: University of Queensland


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus UCIM6101

ncbi_submitter: Broad Institute


ncbi_assembly_name: freshwater MAG --- Loclat_bin-03169

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Inverness


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Streptomyces phaeochromogenes


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia sp. BIOML-A64


ncbi_country: Malaysia: Johor

ncbi_isolation_source: Peritoneal Fluid

ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: Institute for medical research


ncbi_organism_name: Candidatus Angelobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;g__Candidatus Angelobacter;x__unclassified Candidatus Angelobacter;s__Candidatus Angelobacter sp.


ncbi_country: USA: California

ncbi_organism_name: Pseudomonas syringae pv. aceris

ncbi_strain_identifiers: ICMP 2802

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. aceris


ncbi_organism_name: uncultured Muribaculum sp.


gtdb_type_species_of_genus: t

ncbi_organism_name: Aerococcus viridans

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Pseudomonas aeruginosa C3719

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_country: Turkey

ncbi_isolation_source: fish

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: SUPERTROUT


ncbi_country: Honduras: Cortes; San Pedro Sula

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_country: Brazil: Eastern Amazon

ncbi_isolation_source: pasture soil

ncbi_organism_name: Nocardioides kongjuensis

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: lake water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom: London

ncbi_isolation_source: Rectum

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Nottingham Trent University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Thiotrichales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Colombia: Antioquia

ncbi_isolation_source: Tissue right toe

ncbi_organism_name: Escherichia coli

ncbi_submitter: International Center for Microbial Genomics - Universidad El Bosque


ncbi_isolation_source: in silico pooling of 166 mouse fecal samples

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Michigan


ncbi_submitter: University Hospital Basel


ncbi_organism_name: Salmonella enterica

ncbi_submitter: PulseNet Next Generation Subtyping Methods Unit


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Plant

ncbi_organism_name: Ralstonia syzygii subsp. syzygii

ncbi_submitter: LM-UGent

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia;x__Ralstonia solanacearum species complex;s__Ralstonia syzygii;sb__Ralstonia syzygii subsp. syzygii


ncbi_country: Cote d Ivoire: Africa

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus altitudinis

ncbi_strain_identifiers: NRRL BD-150

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Brazil

ncbi_isolation_source: Fecal Swab

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: HI

ncbi_isolation_source: albacore tuna-anal vent

ncbi_organism_name: Photobacterium kishitanii

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Candidatus Saccharicenans sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;x__unclassified Candidatus Saccharicenans;s__Candidatus Saccharicenans sp.


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: SC


ncbi_submitter: Cornell University


ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_country: Norway

ncbi_isolation_source: fish gut

ncbi_organism_name: Shewanella baltica

ncbi_submitter: Institute of Marine Research


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Pittsburgh


ncbi_country: South Korea: Shinan-gun

ncbi_isolation_source: Tidal flat

ncbi_organism_name: Rossellomorea sp. KS-H15a

ncbi_submitter: Kunsan National University


ncbi_country: Australia: Feather Reef

ncbi_organism_name: Endozoicomonas sp.

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Minnesota


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: University of Calgary


ncbi_country: China: Liaocheng

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Liaocheng Center for Disease Control and Prevention


ncbi_country: USA: Ohio

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_organism_name: uncultured Zetaproteobacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatius Mariprofundia;x__environmental samples;s__uncultured Zetaproteobacteria bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus xylosus

ncbi_strain_identifiers: Sil RS 2

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA

ncbi_submitter: University of Florida


ncbi_country: Mexico

ncbi_isolation_source: river water

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Give


ncbi_organism_name: Methylocystis sp.

ncbi_submitter: Michigan State University


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_country: USA: Texas

ncbi_isolation_source: Subiliac Lymph Node

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: Anode biofilm

ncbi_organism_name: Christensenella sp. UBA7707

ncbi_submitter: University of Queensland


ncbi_organism_name: Clostridium neonatale

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Australia: Kalgoorlie

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Jiaxing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the Second Affiliated Hospital of Jiaxing University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Rothia endophytica

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: New Zealand: Te Puke

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Novogene

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond E1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Montreal


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG14374

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: University of Chicago


ncbi_country: Taiwan: Taipei; Yang Ming Shan area

ncbi_isolation_source: white-flowered calla lily

ncbi_organism_name: Dickeya dadantii

ncbi_submitter: Fu Jen Catholic University


ncbi_country: United Kingdom: England; London

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Institute for Microbiology and Epizootics, Freie University Berlin


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: UTHSC/McGovern Medical School


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_submitter: University of Otago


ncbi_organism_name: Streptomyces sp. NBC_00425

ncbi_submitter: Technical University of Denmark


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: MD

ncbi_isolation_source: stool

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_country: USA: Upper Klamath Lake; OR

ncbi_isolation_source: lake water

ncbi_organism_name: Anabaena sp. MDT14b

ncbi_submitter: Oregon State University


ncbi_country: Canada: Victoria

ncbi_isolation_source: Ixodes pacificus

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: University of Regina


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: Canada: Acadian Forest; New Brunswick

ncbi_isolation_source: lowbush blueberries

ncbi_organism_name: Rouxiella badensis subsp. acadiensis

ncbi_submitter: University of Verona


ncbi_country: Netherlands

ncbi_isolation_source: Nasopharynx

ncbi_organism_name: Rodentibacter mrazii

ncbi_submitter: University of Copenhagen


ncbi_country: South Africa: Ethekwini district; KwaZulu-Natal

ncbi_isolation_source: Peadiatric - sink

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: France

ncbi_isolation_source: crop

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus gigeriorum;x__Lactobacillus gigeriorum DSM 23908 = CRBIP 24.85


ncbi_country: Switzerland: Zurich

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_country: USA: Tifton County; Georgia

ncbi_organism_name: Pantoea allii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: China

ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S067

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S067


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Sulfitobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Zhejiang University


ncbi_organism_name: Mitsuokella jalaludinii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Italy

ncbi_isolation_source: sorghum sourdough

ncbi_organism_name: Weissella confusa

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_country: Greece

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Washington University in St. Louis


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Candidatus Borkfalkia ceftriaxoniphila


ncbi_country: Japan

ncbi_isolation_source: bronchial fluid

ncbi_organism_name: Veillonella tobetsuensis

ncbi_strain_identifiers: PAGU 1579

ncbi_submitter: Department of Infectious Diseases, National Center for Global Health and Medicine


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: EPFL


ncbi_country: South Korea: Seoul

ncbi_isolation_source: Tan-cheon wastewater plant

ncbi_organism_name: Chryseobacterium bernardetii

ncbi_submitter: Korea university


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Enterococcus faecalis LA3B-2

ncbi_submitter: The Genome Institute


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Belgium

ncbi_isolation_source: fecal incubation

ncbi_organism_name: Slackia sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_assembly_name: freshwater MAG --- B2_bin-0841

ncbi_isolation_source: pond

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Patescibacteria group bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: Water column in the Pearl River Estuary

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Metamycoplasmataceae bacterium

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Phototrophicaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: ICAR-Central Institute of Fisheries Education


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Burkholderiaceae bacterium UC74_6

ncbi_submitter: The Connecticut Agricultural Experiment Station


ncbi_organism_name: uncultured Bacteriovoracaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Coraliomargaritaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_submitter: Universidad de Leon


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d'Aosta


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Streptomyces pseudovenezuelae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: Brazil: Belem

ncbi_organism_name: Pseudomonadota bacterium


ncbi_country: Canada: Quebec

ncbi_isolation_source: Slaughterhouse-environment

ncbi_submitter: Tamazight Cherifi's shared submissions


ncbi_submitter: Zhejiang University


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Kasetsart University


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Umea University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Minnesota


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: Photobacterium damselae subsp. damselae

ncbi_submitter: Universidade de Santiago de Compostela


ncbi_organism_name: Ruminococcus callidus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: brown biofilm from alkaline hot spring

ncbi_organism_name: Gemmatales bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: USA

ncbi_organism_name: Escherichia coli FRIK920

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Chelatococcus asaccharovorans

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: University of Queensland


ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Porto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Spain

ncbi_isolation_source: tonsil swab

ncbi_organism_name: Staphylococcus hyicus

ncbi_submitter: Wageningen University and Research


ncbi_isolation_source: Ileo-caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Panama: Portobelo

ncbi_isolation_source: marine benthic turfs

ncbi_organism_name: Caldora sp. SIO3E6

ncbi_submitter: UCSD


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx


ncbi_organism_name: uncultured Blautia sp.


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Ezakiella massiliensis


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: USA: California; Alameda County

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: feces

ncbi_organism_name: Pediococcus acidilactici

ncbi_strain_identifiers: pll

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Brucella anthropi

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Bacteroidetes bacterium SB0662_bin_6

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium SB0662_bin_6


ncbi_isolation_source: animal-cattle-steer

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: FDA


ncbi_organism_name: Bifidobacterium pullorum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Singapore

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Temasek Life Sciences Laboratory Limited


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Canada: Ontario

ncbi_isolation_source: dairy cattle manure digester

ncbi_submitter: JPIAMR ARMIS


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_submitter: University of Pittsburgh


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: AAFC


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Southampton


ncbi_isolation_source: tundra soil

ncbi_organism_name: uncultured Terriglobales bacterium

ncbi_submitter: University of Helsinki


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Guangxi

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Kennedy Institute of Rheumatology, University of Oxford


ncbi_isolation_source: Caecum

ncbi_organism_name: Pediococcus pentosaceus


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human skin

ncbi_organism_name: Corynebacterium aurimucosum

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides acidifaciens


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_strain_identifiers: FAIRING W8B-1

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Iran: Urmia

ncbi_isolation_source: root nodule

ncbi_organism_name: Pseudomonas sp. T1.Ur

ncbi_submitter: University of Tartu


ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Prevotellaceae bacterium UBA4334

ncbi_submitter: University of Queensland


ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: lung

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Ares Genetics


ncbi_country: Lebanon

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: VRE 7

ncbi_submitter: Lebanese American University


ncbi_country: Chile

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Enterobacter sp. DE0047

ncbi_submitter: BGI


ncbi_country: USA: NE

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA


ncbi_organism_name: Bifidobacteriaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Treponema sp. UBA4635


ncbi_country: South Korea: Seoul

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: EFA 39

ncbi_submitter: Yonsei Medical Center


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Dental abscess

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: SC


ncbi_organism_name: Enterococcus avium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Bangladesh Council of Scientific and Industrial Research (BCSIR)


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Haemophilus aegyptius

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Distal colon

ncbi_organism_name: Duncaniella muris


ncbi_country: China: Yushu prefecture; Qinghai Province

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Streptococcus zhangguiae

ncbi_submitter: China CDC


ncbi_country: USA

ncbi_organism_name: Pseudomonas lundensis

ncbi_submitter: University of Michigan, Ann Arbor


ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Jiangsu

ncbi_isolation_source: Genital tract

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou university


ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Washington


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: South Carolina

ncbi_isolation_source: pharyngeal mucosa

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Tannerellaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: nasopharynx


ncbi_country: South Korea: daejeon

ncbi_organism_name: Corynebacterium glutamicum

ncbi_submitter: The catholic university of korea


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: Faeces


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: State Research Center of Dermatovenerology and Cosmetology


ncbi_country: China: Jiangsu; Nanjing

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Lelliottia amnigena

ncbi_submitter: Institute of Environmental Science and Research


ncbi_organism_name: Kangiellaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Australia: QLD

ncbi_isolation_source: IVC sample

ncbi_organism_name: Ralstonia sp. AU12-08

ncbi_submitter: Griffith University


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: China: Nanji Island

ncbi_organism_name: Exiguobacterium sp. s59

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. s59


ncbi_isolate: AOP42_C1_surf _bin _2

ncbi_organism_name: Corynebacterium casei

ncbi_strain_identifiers: AOP42_C1_surf _bin _2

ncbi_submitter: Genoscope


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: Aeromonas jandaei

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Duodenibacillus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Denmark: Avedore

ncbi_isolation_source: activated sludge from Aved_18-Q3-R54-62

ncbi_organism_name: Ottowia sp.

ncbi_submitter: Aalborg University


ncbi_isolation_source: feces

ncbi_organism_name: Porphyromonadaceae bacterium UBA6874

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Chile: Tarapaca; Salar de Huasco; H5 site

ncbi_isolation_source: Sediment sample

ncbi_organism_name: Exiguobacterium sp. SH5S13

ncbi_submitter: Universidad Andres Bello

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. SH5S13


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_submitter: Stavropol Plague Control Reseach Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_country: Canada: Edmonton

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_country: India

ncbi_isolation_source: healthy plant

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Jammu


ncbi_country: Portugal

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_strain_identifiers: CRAFRU 14.08

ncbi_submitter: University of Udine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: USA: OR

ncbi_isolation_source: ground turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. arizonae;x__Salmonella enterica subsp. arizonae serovar 18:z4,z23:-;x__Salmonella enterica subsp. arizonae serovar 18:z4,z23:- str. CVM N6509


ncbi_country: Denmark

ncbi_isolation_source: in vitro phage -resistant clone

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Xanthomonas rydalmerensis

ncbi_submitter: NSW Department of Primary Industries


ncbi_organism_name: Campylobacter coli

ncbi_submitter: USDA


ncbi_country: Russia

ncbi_isolation_source: soil

ncbi_strain_identifiers: ATCC 6013

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium pasteurianum;x__Clostridium pasteurianum DSM 525 = ATCC 6013


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: North Sea

ncbi_isolation_source: coastal sea water column HE361-14 at a depth of 3m

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: South Africa: Lokaleng Village; Mahikeng

ncbi_isolation_source: fecal sample from diarrhoea affected cattle A

ncbi_organism_name: Cellulomonas sp.

ncbi_submitter: North-west University


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_country: China

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_organism_name: Streptomyces syringium

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada: Lacombe

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: AAFC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: P2 JHB VIII

ncbi_submitter: University of Pretoria


ncbi_isolation_source: food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Capital Institute of Pediatrics,Beijing, China


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: GEN_BGC Atlantic-Pacific 2011 bin.183 MAG

ncbi_isolate: bin.183 MAG

ncbi_isolation_source: North Pacific

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_strain_identifiers: bin.183 MAG

ncbi_submitter: IDAEA-CSIC


ncbi_organism_name: Enterococcus faecalis E12

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Trento


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Italy

ncbi_isolation_source: Stool 5

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_country: India: Silagrant; Guwahati; Assam

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_organism_name: Bacillus cereus 03BB102

ncbi_submitter: The J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus 03BB102


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_submitter: University of Toronto


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Cardiff University


ncbi_country: USA: Texas

ncbi_isolation_source: guttural pouch lavage

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: EMG


ncbi_country: Australia: Western Australia

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin Univrsity


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_organism_name: Micrococcus lacusdianchii

ncbi_strain_identifiers: JXJ CY 30

ncbi_submitter: JIUJIANG UNIVERSITY


ncbi_isolation_source: Human fecal samples

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: microbial pathogenic ecology group


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Malaysia: Johor

ncbi_isolation_source: urine

ncbi_submitter: Deakin University


ncbi_submitter: University of Georgia


ncbi_country: Nigeria

ncbi_isolation_source: wound

ncbi_submitter: Cepheid


ncbi_country: China: JiaoZhou

ncbi_isolation_source: diseased sheep

ncbi_organism_name: Brucella melitensis bv. 3

ncbi_submitter: National Institute for Communicable Disease Control & Prevention, Chinese Center for Disease Control and Prevention


ncbi_country: Germany

ncbi_isolation_source: raw milk

ncbi_organism_name: Facklamia lactis

ncbi_submitter: Technical University of Munich


ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_country: USA: San Francisco

ncbi_isolation_source: feces on street

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_country: North Sea

ncbi_isolation_source: North Sea Sediment

ncbi_organism_name: Sulfitobacter sp. JL08

ncbi_submitter: University of Oldenburg, Insitute for Chemistry and Biology of the Marine Environment (ICBM)


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: South Korea: Yellow Sea

ncbi_isolation_source: Intertidal sediment

ncbi_organism_name: Qipengyuania seohaensis

ncbi_submitter: Second Institute of Oceanography, State Oceanic Administration


ncbi_organism_name: Listeria monocytogenes QOC2

ncbi_submitter: VETMEDVIENNA


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mutans TCI-149

ncbi_submitter: JCVI


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Denver; CO

ncbi_isolation_source: nares

ncbi_submitter: University of Colorado


ncbi_country: China: Liaoning

ncbi_isolation_source: lung

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Special Animal and Plant Sciences, The Chinese Academy of Agricultural Sciences,


ncbi_isolation_source: Farm

ncbi_submitter: Pennsylvania State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Stanleyville


ncbi_country: Chile

ncbi_isolation_source: Muscle

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: ADL Diagnostic Chile Ltda


ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: EMG


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1456

ncbi_submitter: Broad Institute


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidetes bacterium UBA2024

ncbi_submitter: University of Queensland

ncbi_taxonomy: d__Bacteria;p__Bacteroidota;c__;o__unclassified Bacteroidota Order II.;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;o__unclassified Bacteroidota Order II.;s__Bacteroidetes bacterium UBA2024


ncbi_submitter: University of Pittsburgh

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus SA9908


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 13ft depth

ncbi_organism_name: Acidobacteria bacterium RBG_13_68_16

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__unclassified Acidobacteriota;s__Acidobacteria bacterium RBG_13_68_16


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Rivihabitans pingtungensis

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: Ewingella sp. AOP8-B2-18

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Pseudolactococcus raffinolactis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St Louis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: NNRo 2505

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_organism_name: Streptomyces sp. NPDC052301

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Burkholderiaceae bacterium


ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Yantai Center for Disease Control and Prevention


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Oenococcus oeni

ncbi_submitter: UMR oenologie


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Dekas Lab, Stanford University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Collinsella sp. HCP3S3_E5

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: USA: San Fransisco

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Candidatus Alloscillospira sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Alloscillospira;x__unclassified Candidatus Alloscillospira;s__Candidatus Alloscillospira sp.


ncbi_organism_name: Streptomyces chartreusis


ncbi_organism_name: uncultured Pseudomonas sp.


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Antwerp


ncbi_country: Brazil: Blumenau


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: CRC AquaDiva


ncbi_country: Thailand

ncbi_isolation_source: rhizosphere soil of wild rice

ncbi_organism_name: Actinoallomurus soli

ncbi_submitter: Kasetsart University


ncbi_organism_name: Enterobacter chengduensis

ncbi_submitter: Bicetre hospital


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Psychromonas sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bdellovibrio sp.

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_submitter: EPFL


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0059R

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: Muribaculaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG12518

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Fibrobacter succinogenes

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Ruminococcaceae bacterium UBA1213

ncbi_submitter: University of Queensland


ncbi_organism_name: Salmonella enterica

ncbi_submitter: China National Centre for Food Safety Risk Assessment


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: France: Paris

ncbi_organism_name: Escherichia coli

ncbi_submitter: inserm


ncbi_assembly_name: freshwater MAG --- Loc081215-4m_bin-0631

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Coprococcus comes

ncbi_submitter: University of Chicago


ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Dialister invisus

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolate: Streptococcus mitis

ncbi_organism_name: Streptococcus mitis

ncbi_strain_identifiers: Streptococcus mitis

ncbi_submitter: UNIVERSITY COLLEGE LONDON


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiaceae bacterium


ncbi_organism_name: Niallia nealsonii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Curtobacterium oceanosedimentum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Haemophilus paraphrohaemolyticus


ncbi_country: United Kingdom:Scotland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ireland: Northern region of ROI

ncbi_isolation_source: cecal contents

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_isolation_source: burned soil

ncbi_organism_name: Belnapia sp.

ncbi_submitter: Colorado State University


ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Chitinophaga sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China

ncbi_organism_name: Salmonella enterica

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_isolation_source: Human Feces

ncbi_submitter: Washington State University College of Veterinary Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: USA: Indiana; Moores Creek IURTP

ncbi_isolation_source: nematodes

ncbi_organism_name: Xenorhabdus bovienii

ncbi_submitter: Xenorhabdus project-Indiana University


ncbi_organism_name: Brevundimonas diminuta 3F5N

ncbi_submitter: MICALIS


ncbi_country: United Kingdom: Sheffield

ncbi_isolation_source: Laboratory reference strain

ncbi_submitter: University of Bath


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Paenibacillus sp. FSL L8-0638

ncbi_submitter: Penn State


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Planktomarina sp.

ncbi_submitter: Ocean University of China


ncbi_country: Australia

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: The ithree institute


ncbi_assembly_name: Rumen uncultured genome RUG14379

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Streptomyces sp. CGMCC 4.7035

ncbi_submitter: Hunan University of Arts and Science


ncbi_organism_name: Pseudomonas migulae

ncbi_submitter: groningen institute for evolutionary life sciences, university of groningen


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Paenibacillus sp. FSL R7-0128


ncbi_country: Italy

ncbi_isolation_source: mud volcano

ncbi_organism_name: Candidatus Methylacidiphilum infernorum

ncbi_submitter: Korea Institute of Geoscience and Mineral Resources

ncbi_taxonomy: d__Bacteria;p__Verrucomicrobiota;c__Methylacidiphilae;o__Methylacidiphilales;f__Methylacidiphilaceae;g__Methylacidiphilum (ex Ratnadevi et al. 2023);s__Candidatus Methylacidiphilum infernorum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Methylacidiphilae;o__Methylacidiphilales;f__Methylacidiphilaceae;g__Methylacidiphilum (ex Ratnadevi et al. 2023);s__Candidatus Methylacidiphilum infernorum


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 255

ncbi_submitter: SC


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_strain_identifiers: 33i spring

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Draconibacterium orientale

ncbi_submitter: University Duisburg-Essen


ncbi_country: Germany

ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: Ireland

ncbi_isolation_source: Mandibular lymphnode abscess

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: University of Kentucky

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Dialister hominis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: saliva

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus;s__Lentilactobacillus parabuchneri;x__Lentilactobacillus parabuchneri DSM 5707 = NBRC 107865


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Oxford


ncbi_country: Antarctica

ncbi_isolation_source: Sediment

ncbi_organism_name: Marisediminicola antarctica

ncbi_submitter: Polar Research Institute of China


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Belarus: Slutsk

ncbi_isolation_source: rhizosphere of sorrel (Rumex acetosa) from a kitchen garden

ncbi_organism_name: Ammoniphilus oxalaticus

ncbi_submitter: Institute Pasteur