ncbi_organism_name: uncultured Pelotomaculum sp.


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_level: Scaffold

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Cutibacterium acnes subsp. defendens

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_submitter: Center for Microbial Communities


gtdb_representative: t

ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Southampton


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Chloroflexia bacterium

ncbi_submitter: East China Normal University


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_country: New Zealand

ncbi_organism_name: Pseudomonas savastanoi pv. glycinea

ncbi_submitter: University of the West of England

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. glycinea


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Yunnan Agricultural University


ncbi_submitter: Washington University in Saint Louis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_organism_name: Mammaliicoccus sciuri


ncbi_isolation_source: environment

ncbi_strain_identifiers: Levine 15

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. Levine 15


ncbi_country: China:Qinghai-Tibet Plateau

ncbi_organism_name: Erwinia sorbitola

ncbi_refseq_category: reference genome

ncbi_submitter: Chinese Center for Disease Control and Prevention

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Shewanella algae

ncbi_submitter: Sanya Peoples Hospital


ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Xinjiang Uygur Autonomous Region

ncbi_isolation_source: rhizosphere soil of Aconitum carmichaelii

ncbi_organism_name: Herbiconiux aconitum

ncbi_submitter: Institute of Medicinal Biotechnology


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: JOHN INNES CENTRE, NORWICH, UK.


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_country: China: Lhasa City; Tibet Autonomous Region

ncbi_isolation_source: Culturable bacteria

ncbi_organism_name: Azospirillum sp. A1-3

ncbi_submitter: Hunan Agricultural University


ncbi_isolation_source: colorectum

ncbi_organism_name: Butyricicoccus pullicaecorum

ncbi_submitter: Quadram Institutte


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Canada: Ontario

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas syringae pv. tomato

ncbi_strain_identifiers: Pst DC 99T3A

ncbi_submitter: Ottawa Research and Development Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. tomato


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacterium sp.

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: EMG


ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: CINVESTAV


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Thailand: Central

ncbi_isolation_source: Rice field soil

ncbi_organism_name: Burkholderia thailandensis E264

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Holophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Flavobacterium glaciei

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: East China Sea

ncbi_isolation_source: natural oxic surface sediment

ncbi_organism_name: Sulfitobacter sp. BDSS02

ncbi_submitter: Ocean University of China


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Coprobacillus cateniformis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhongnan Hospital of Wuhan University


ncbi_country: France

ncbi_isolation_source: urine sample

ncbi_submitter: CHU de Bicetre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: USA: Tampa; Florida

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of South Florida


ncbi_isolation_source: Japanese peer

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Hiroshima University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Catenibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: Rectal swab

ncbi_submitter: Univeristy of Pretoria and National Health Laboratory Services


ncbi_organism_name: Paracoccaceae bacterium


ncbi_organism_name: Helicobacter apodemus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome


ncbi_country: Ethiopia

ncbi_submitter: Cardiff University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Denmark

ncbi_organism_name: Companilactobacillus farciminis

ncbi_submitter: Carlsberg Research Laboratory


ncbi_organism_name: Acidipropionibacterium thoenii DSM 20276


ncbi_country: USA: Menlo Park

ncbi_isolation_source: ATCC

ncbi_submitter: Pacific Biosciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli K-12;x__Escherichia coli str. K-12 substr. MG1655


ncbi_country: USA: MI

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolate: Intestine

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Jiangxi Agricultural University


ncbi_submitter: Shanghai Municipal Center for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rissen


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: ANSES


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: Bolbostemmatis Rhizoma

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Guangxi University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Streptomyces sp. NPDC001868

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Protocalliphora azurea


ncbi_country: Japan

ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: China: Hubei

ncbi_isolation_source: brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: South Dakota

ncbi_isolation_source: Bioreactor

ncbi_organism_name: Sphingomonas melonis

ncbi_submitter: MR DNA


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Iowa


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Veillonella ratti

ncbi_submitter: University of Chicago


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Guelph

ncbi_isolation_source: Swine manure pit

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Candidatus Planktophila sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__environmental samples;s__uncultured Candidatus Planktophila sp.


ncbi_country: USA: CA

ncbi_isolation_source: enriched culture of Copco Reservoir water sample

ncbi_organism_name: Cyanobium sp. Copco_Reservoir_LC18

ncbi_submitter: Oregon State University


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: South Korea

ncbi_organism_name: Flavobacterium saliperosum S13

ncbi_submitter: Seoul National University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ligilactobacillus murinus


ncbi_submitter: Chinese center for disease control and prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: South Korea: Seoul

ncbi_organism_name: Lachnoclostridium sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: EMG


ncbi_country: Denmark: Kalundborg

ncbi_isolation_source: activated sludge from Kalu_18-Q3-R12-55

ncbi_organism_name: Candidatus Woesebacteria bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;x__unclassified Candidatus Woesebacteria;s__Candidatus Woesebacteria bacterium


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Tang lab


ncbi_country: Russia:St Petersburg

ncbi_isolation_source: cervical

ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: SC


ncbi_organism_name: Bifidobacterium pseudocatenulatum


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Auburn University


ncbi_country: France

ncbi_isolation_source: withlow

ncbi_organism_name: Veillonella sp. CHU740

ncbi_submitter: Institut Pasteur


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacillus cereus

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of the Basque Country


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG10928

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Manilae;x__Leptospira interrogans serovar Manilae str. K56


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_country: Uruguay

ncbi_isolation_source: lung

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Institut Pasteur Montevideo


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_assembly_level: Chromosome

ncbi_isolation_source: blood

ncbi_organism_name: Treponema pallidum subsp. pallidum

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: [Kitasatospora] papulosa

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Aliidiomarina sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA

ncbi_organism_name: Enterococcus durans

ncbi_submitter: Icahn School of Medicine


ncbi_country: China

ncbi_isolation_source: maybe soil

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bdellovibrio bacteriovorus

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_strain_identifiers: Bir 314

ncbi_submitter: SC


ncbi_country: China: Guangxi

ncbi_submitter: Northwest A&F University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: not available: to be reported later


ncbi_strain_identifiers: Gottschalk 1003A

ncbi_submitter: The J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus agalactiae;x__Streptococcus agalactiae str. Gottschalk 1003A


ncbi_country: Canada:Terrace; Lakelse Hot Spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_assembly_name: freshwater MAG --- LJ_bin-5001

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Leptolyngbya sp.


ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: RMIT University


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-347-K17

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV037

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: China: Shandong; Weifang

ncbi_isolation_source: feces

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: ShandongCDC


ncbi_country: Pacific Ocean: Juan de Fuca Hydrothermal vents

ncbi_isolation_source: Juan de Fuca hydrothermal vents

ncbi_organism_name: Hydrogenovibrio thermophilus

ncbi_submitter: University of South Florida


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Poland: Gorsk

ncbi_isolation_source: rape rhizosphere

ncbi_organism_name: Pseudomonas sp. B14(2022)

ncbi_submitter: Nicolaus Copernicus University in Torun


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Kordiimonas sp.

ncbi_submitter: University of Connecticut


ncbi_country: France: Normandy

ncbi_isolation_source: respiratory

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: LABEO


ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: University of Michigan


ncbi_isolation_source: Asian hornet Vespa velutina

ncbi_organism_name: Convivina praedatoris

ncbi_submitter: GHENT UNIVERSITY


ncbi_organism_name: Achromobacter insuavis

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: Radboud University


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0133R

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: EMG


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Laboratory of Infectious Diseases, Kitasato Institute for Life Sciences, Kitasato University


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: blood

ncbi_submitter: Sun-yat Sen University


ncbi_isolation_source: groundwater

ncbi_organism_name: Holosporales bacterium

ncbi_submitter: University of Queensland


ncbi_country: France: Chateauneuf-de-Gadagne

ncbi_isolation_source: irrigation canal

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: University of Arizona

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: EPFL


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_assembly_name: freshwater MAG --- MJ-2014-D1_bin-0662

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: vaginal swab from patient with trichomoniasis

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus vaginalis;x__Limosilactobacillus vaginalis DSM 5837 = ATCC 49540


ncbi_isolation_source: Distal colon

ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_country: Israel

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: KPC 16

ncbi_submitter: TLVMC


ncbi_organism_name: Candidatus Sumerlaeaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy: d__Bacteria;p__Candidatus Sumerlaeota;c__Candidatus Sumerlaeia;o__Candidatus Sumerlaeales;f__Candidatus Sumerlaeaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;c__Candidatus Sumerlaeia;o__Candidatus Sumerlaeales;f__Candidatus Sumerlaeaceae;x__unclassified Candidatus Sumerlaeaceae;s__Candidatus Sumerlaeaceae bacterium


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Eggerthellaceae bacterium 24-137

ncbi_submitter: Nanjing University


ncbi_country: Italy

ncbi_submitter: Sapienza University of Rome


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp22 AA4

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp22 AA4

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Australia: Melbourne

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD8504-2

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Candidatus Babeliales bacterium

ncbi_submitter: Northeastern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;x__unclassified Candidatus Babeliales;s__Candidatus Babeliales bacterium


ncbi_country: USA: New York City

ncbi_submitter: Columbia University Medical Center


ncbi_country: China: Harbin; Northeastern China

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Changchun Veterinary Research Institute


ncbi_isolation_source: human gut

ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Portugal: Porto

ncbi_isolation_source: Urinary Tract Infection

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-9799

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bifidobacterium boum

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Micromonospora sp. WMMA1923

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Bolivia

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florence


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: MD

ncbi_isolation_source: Dietary Supplement

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: USFDA


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flammeovirgaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_country: China: Jiangsu

ncbi_isolation_source: abdominal dropsy

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Ferrithrix thermotolerans DSM 19514

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Georgia

ncbi_isolation_source: insect gut; insect collected from Cucurbit plant

ncbi_organism_name: Caballeronia sp. GAOx1

ncbi_submitter: Emory University


ncbi_country: Japan

ncbi_isolation_source: seawater

ncbi_organism_name: Flavobacteriaceae bacterium GF1

ncbi_submitter: Kyoto University


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Enterobacter cloacae complex sp.6730722

ncbi_submitter: Tel Aviv Sourasky Medical Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp.6730722


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Ignavibacterium sp.


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Peptoniphilus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Hellea sp.


ncbi_organism_name: Nocardiopsis protaetiae

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: Dyella flava

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Changchun Veterinary Research Institute,


ncbi_organism_name: Bryobacteraceae bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Vibrio sp. FYR_4

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: Synechococcaceae cyanobacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: South China Agriculture University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Tongling Copper Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: bacterium

ncbi_submitter: Inha University


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_assembly_name: freshwater MAG --- AM_bin-3339

ncbi_organism_name: uncultured Acidobacteriia bacterium

ncbi_submitter: BILS


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P4 gut compartment

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Vicingaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Ecuador: Quito

ncbi_isolation_source: Rectal swab 1

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad Central del Ecuador


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Basel


ncbi_organism_name: Leptolyngbya sp. GB2-A1

ncbi_submitter: Institute of Hydrobiology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Colombia: Boyaca

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SC


ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. (in: high G+C Gram-positive bacteria)


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_organism_name: Absicoccus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: BGI-Shenzhen


ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Germany

ncbi_submitter: Swansea University


ncbi_country: Indian Ocean

ncbi_isolation_source: sediment

ncbi_organism_name: Erythrobacter sp. LQ02-29

ncbi_submitter: First Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Texas

ncbi_isolation_source: Clean room

ncbi_organism_name: Bacillus sp. 3103sda1

ncbi_submitter: NASA Johnson Space Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 3103sda1


ncbi_country: China: Qingdao

ncbi_isolation_source: soil

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Ocean University of China


ncbi_country: USA: Delaware

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_submitter: VEIL Bradyrhizobium group


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas juntendi

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_assembly_name: SalTypUJ308A 1.0

ncbi_country: Malaysia: Kelantan

ncbi_submitter: University of Hyderabad

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi;x__Salmonella enterica subsp. enterica serovar Typhi str. UJ308A


ncbi_organism_name: Mesorhizobium sp. L2C066B000

ncbi_submitter: University of Southern California


ncbi_country: China: Guangdong

ncbi_isolation_source: air medium

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: South Korea

ncbi_isolation_source: Korean traditional alcoholic beverage

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Macrogen Inc

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Candidatus Rifleibacteriota bacterium

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rifleibacteriota;x__unclassified Candidatus Rifleibacteriota;s__Candidatus Rifleibacteriota bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of KwaZulu-Natal


ncbi_isolation_source: cold seep

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: South Korea: Seoul

ncbi_isolation_source: nasophraynx

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chungbuk National University Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_country: India: Bihar; Buxar; Buxar

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: deep-sea water

ncbi_organism_name: Novosphingobium sp. PC22D

ncbi_submitter: The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources


ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus sp. DIV0212c

ncbi_submitter: Broad Institute


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 254

ncbi_submitter: SC


ncbi_country: Malaysia

ncbi_isolation_source: water

ncbi_organism_name: Leptospira langatensis

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Boston

ncbi_isolation_source: clinical

ncbi_submitter: University of Nottingham


ncbi_country: France

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Glaesserella parasuis

ncbi_strain_identifiers: DR

ncbi_submitter: Rosselkhoznadzor The Russian State Center for Animal Feed and Drug Standardization and Quality


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: Symbiodiniaceae culture

ncbi_organism_name: Qipengyuania flava

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Angelakisella sp.


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: [Lactobacillus] rogosae

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Phocaeicola dorei CL03T12C01


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_country: China: Hong Kong

ncbi_isolation_source: biofilm full-scale rotating biological contactor (RBC)

ncbi_organism_name: Candidatus Scalindua sp.

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__Candidatus Scalindua;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__Candidatus Scalindua;x__unclassified Candidatus Scalindua;s__Candidatus Scalindua sp.


ncbi_country: India: Fort Cochi; Arabian Sea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Luteimonas sp. FCS-9

ncbi_submitter: Institute of Microbial Technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Gemmatimonas sp.


ncbi_country: Australia

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SC


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Toho University


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Glaciecola sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Brazil: Parana

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Londrina State University


ncbi_country: India

ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Japan: Tokyo Bay; Honshu

ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: University of Hawaii-Manoa


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Mycobacterium avium subsp. avium

ncbi_submitter: US Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. avium


ncbi_organism_name: Coprobacillus sp. 8_2_54BFAA

ncbi_submitter: Broad Institute


ncbi_country: USA:Nine Springs Wastewater Treatment Plant; Madison Metropolitan Sewerage District; Dane County; Madison; WI

ncbi_isolation_source: laboratory-scale deammonification bioreactor inoculated with effluent from wastewater treatment plant

ncbi_organism_name: Nitrosomonas europaea

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Winogradskyella arenosi

ncbi_submitter: University of Southern California


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Cyanobium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Pseudomonas helleri

ncbi_submitter: Max Planck Institute for Biology


ncbi_country: Germany

ncbi_isolation_source: rectal swab

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Lautropia sp.

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Second Affiliated Hospital of Nanchang University


ncbi_country: Spain: Hinojos; Huelva

ncbi_isolation_source: Plant

ncbi_organism_name: Rosenbergiella australiborealis

ncbi_submitter: Complutense University of Madrid


ncbi_isolation_source: marine

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Greece

ncbi_isolation_source: rectal

ncbi_submitter: bioMerieux


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: Auburn University


ncbi_organism_name: Pseudonocardia sediminis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Cuba

ncbi_isolation_source: wound/abscess

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Clinic Heidelberg


ncbi_organism_name: Allofrancisella guangzhouensis

ncbi_submitter: Swedish Defense Research Agancy


ncbi_country: USA

ncbi_isolation_source: Full-scale methanogenic bioreactor treating purified terephthalic acid process wastewater

ncbi_organism_name: Pelotomaculum sp. PtaB.Bin117

ncbi_submitter: University of Illinois


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USSR

ncbi_strain_identifiers: BGSC 4G1

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar galleriae


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Turku


ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: EPFL


ncbi_submitter: Paris Saclay University


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_submitter: Kyoto University


ncbi_isolation_source: Vial cap

ncbi_organism_name: Burkholderia cenocepacia

ncbi_strain_identifiers: IPCU-A

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_assembly_name: Rumen uncultured genome RUG14272

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Prevotella sp. MGM2

ncbi_submitter: Waseda University


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Williamsia phyllosphaerae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Italy: Quinto di Treviso (TV)

ncbi_isolation_source: intestine content

ncbi_organism_name: Clostridium botulinum D/C

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Streptococcus sp.


ncbi_organism_name: Pedobacter sp. SG908

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium str. DT104

ncbi_submitter: SC


ncbi_organism_name: uncultured Syntrophaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Denmark: Hovedstaden;Copenhagen

ncbi_isolation_source: Proficiency Panel Isolate

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: China: Huizhou

ncbi_isolation_source: sputum

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Microbacterium sp. NPDC097977

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Ecuador

ncbi_isolation_source: traqueal

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: UAEM


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Polaribacter haliotis

ncbi_submitter: Cong Sun Research Group


ncbi_country: India: Jetpur; Gujarat

ncbi_isolation_source: Textile industry effluent

ncbi_organism_name: Sulfurospirillum sp.

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1397

ncbi_submitter: Broad Institute


ncbi_country: Italy

ncbi_isolation_source: vaginal swab

ncbi_organism_name: Limosilactobacillus vaginalis

ncbi_submitter: university of bologna


ncbi_country: South Korea

ncbi_isolation_source: slaughterhouse carcass

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_organism_name: Phototrophicaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Paracoccaceae bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Switzerland: Mt Terri URL; St-Ursanne

ncbi_isolation_source: Opalinus Clay rock porewater BRC-3 borehole

ncbi_organism_name: Gammaproteobacteria bacterium BRH_c0

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Mediterraneibacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_submitter: University of Zurich


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Rhizobiaceae bacterium UBA1291

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: Australia: Five Islands

ncbi_organism_name: Escherichia coli

ncbi_submitter: OUTBREAK


ncbi_country: USA

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Broad Institute


ncbi_submitter: Sichuan University


ncbi_organism_name: Bradyrhizobium sp. LB11.1

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: shandong university


ncbi_organism_name: Bacteriovoracia bacterium

ncbi_submitter: North West University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella grimontii


ncbi_country: Portugal: Porto

ncbi_isolation_source: Intraabdominal infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Mycolicibacterium poriferae


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Bradyrhizobium sp. 33ap4

ncbi_submitter: Agricultural Research Council-Plant Health and Protection


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Sutterella sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: Viet Nam: Tam Dao National Park

ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;x__unclassified Anaerovoracaceae Incertae Sedis;s__Eubacteriales Family XIII. Incertae Sedis bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Succinatimonas hippei

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Calgary


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Prevotella sp. UBA7283

ncbi_submitter: University of Queensland


ncbi_organism_name: Marinoscillum sp.

ncbi_submitter: Institut de Ciencies del Mar


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: South Africa

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WTSI


ncbi_country: Denmark: South Greenland; Kap Hegh

ncbi_isolate: KAP bin118

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: KAP bin118


ncbi_organism_name: Streptomyces anthocyanicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Acinetobacter pittii


ncbi_isolation_source: rumen

ncbi_organism_name: Paenibacillus sp. 79R4

ncbi_submitter: ARS USDA


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: EMG


ncbi_country: Taiwan

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_country: Finland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: China: Hunan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Massilia timonae


ncbi_organism_name: Morganella morganii

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Polaromonas sp. YR568

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Weifang People's Hospital


ncbi_submitter: Drexel


ncbi_country: China

ncbi_isolation_source: sewage

ncbi_organism_name: Aeromonas sp. QDB58

ncbi_submitter: Soochow University


ncbi_submitter: University of Zurich


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: uncultured Chitinophagaceae bacterium


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: Lebanon

ncbi_isolation_source: Red wine

ncbi_organism_name: Oenococcus oeni IOEB_L65_2

ncbi_submitter: Institut des Sciences de la Vigne et du Vin


ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Reyranella massiliensis 521

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Silvanigrellaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_submitter: Academy of Military Medical Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Herbaspirillum sp. GCM10030257

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Seoul National University


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Peptidiphaga sp.

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Cyanobacteriota bacterium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Chitinophaga sp. 22620

ncbi_submitter: Yantai University


ncbi_country: China: Tengchong; Zimeiquan hot spring

ncbi_isolation_source: hot spring sediment

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Brazil: Braganca

ncbi_submitter: LNCC


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Kaust


ncbi_organism_name: Candidatus Multivoradales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Thermoanaerobaculia;o__Candidatus Multivoradales;x__unclassified Candidatus Multivoradales;s__Candidatus Multivoradales bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: United Kingdom: Cholsey Sewage Treatment Works

ncbi_isolation_source: Treated sewage effluent

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: REHAB


ncbi_country: Germany: Freising

ncbi_isolation_source: Caecal content

ncbi_organism_name: Stenotrophomonas muris

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Giesbergeria sp.

ncbi_submitter: Xiamen University


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia sp. MSMB617WGS

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Opitutus sp. GAS368

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Australia

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: University of Malaya


ncbi_organism_name: Aliiroseovarius crassostreae

ncbi_submitter: Ocean University of China


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: household water source

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_isolation_source: metagenome

ncbi_organism_name: Brucella melitensis

ncbi_submitter: University of Queensland


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: cloaca

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: P18 CL A28

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_country: Egypt

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: USUHS


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: DOE JGI


ncbi_country: Germany

ncbi_isolation_source: wheat beer

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Antarctica: Horseshoe Island

ncbi_isolation_source: marine water

ncbi_organism_name: Planococcus sp. S3-L1

ncbi_submitter: Yildiz Technical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Planococcus;x__unclassified Planococcus (in: firmicutes);s__Planococcus sp. S3-L1


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Greece: Athens

ncbi_isolation_source: Halitzia cheese

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Agricultural University of Athens


ncbi_country: USA: Indiana; Moores Creek IURTP

ncbi_isolation_source: nematodes

ncbi_organism_name: Xenorhabdus bovienii

ncbi_strain_identifiers: kraussei MC_44

ncbi_submitter: Xenorhabdus project-Indiana University


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacial surface ice

ncbi_organism_name: Bdellovibrio sp.

ncbi_submitter: Aarhus University


ncbi_country: Belgium

ncbi_isolation_source: fecal incubation

ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_country: USA: NC

ncbi_isolation_source: Core; Corn

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Alphaproteobacteria bacterium UBA1185


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Oceanospirillaceae bacterium UBA4431


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella sp. 2021-64

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_submitter: Ares Genetics


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: paddy field soil

ncbi_organism_name: Sporomusa sp. GT1

ncbi_submitter: National Institute of Advanced Industrial Science & Technology


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_country: Australia: Newcastle

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: University of Queensland


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Collieribacteriota;s__Candidatus Collierbacteria bacterium RIFCSPLOWO2_01_FULL_50_23


ncbi_country: USA: Iowa

ncbi_organism_name: Mannheimia haemolytica D38

ncbi_submitter: National Animal Disease Center


gtdb_type_species_of_genus: t

ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Waddlia chondrophila WSU 86-1044

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Parachlamydiales;f__Waddliaceae;g__Waddlia;s__Waddlia chondrophila;x__Waddlia chondrophila WSU 86-1044


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Indian Ocean

ncbi_isolation_source: Deep-sea sediments

ncbi_organism_name: Stutzerimonas kunmingensis

ncbi_submitter: Third Institute of Oceanography,National Oceanic Adminisstration


ncbi_organism_name: Allomuricauda sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus xylosus


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: terrestrial sediment

ncbi_organism_name: Arthrobacter sp. FW306-2-2C-D06B

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_assembly_name: Rumen uncultured genome RUG13422

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Laos

ncbi_isolation_source: chicken meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_isolation_source: upper soil layer of a landfill; Athens; GA

ncbi_organism_name: Methylosarcina fibrata AML-C10

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_organism_name: Synechococcus sp. RCC307

ncbi_submitter: Genoscope


ncbi_country: Denmark: Kgs. Lyngby

ncbi_isolation_source: pool of bioreactors CSTR01a; CSTR02a; and CSTR03a; thermophilic anaerobic digestion of cattle manure in continuous reactors for biogas production (methane)

ncbi_organism_name: Clostridiales bacterium DTU013

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Antarctica: Lake Vanda; McMurdo Dry Valleys

ncbi_isolation_source: Oligotrophic lake microbial mat

ncbi_organism_name: Leptolyngbya sp. BulkMat.35


ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:-


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Southern California


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: kidney

ncbi_organism_name: Leptospira interrogans serovar Copenhageni

ncbi_submitter: University of Agriculture in Krakow


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: Russia: Chita region

ncbi_organism_name: Yersinia pestis

ncbi_submitter: SRCAMB


ncbi_organism_name: Actinobacillus minor NM305

ncbi_submitter: McGill University


ncbi_organism_name: Streptococcus pneumoniae SP18-BS74

ncbi_submitter: Center for Genomic Sciences, Allegheny-Singer Research Institute


ncbi_country: India: Assam

ncbi_isolation_source: hospital patient

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Denmark: OUH

ncbi_submitter: University of Southern Denmark


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_submitter: United Kingdom Health Security Agency


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Ruian People's Hospital


ncbi_country: China: Zhejiang

ncbi_isolation_source: Ward

ncbi_submitter: the First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Fusobacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Sphingomonas sp. 12-62-6


ncbi_submitter: Universtity Hospital Cologne


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_submitter: Zhejiang university


ncbi_assembly_name: Bacteroidia bacterium Ga0077558

ncbi_country: USA: Ann Arbor

ncbi_isolation_source: dual media filters at the Ann Arbor; Michigan drinking water treatment plant

ncbi_organism_name: Bacteroidia bacterium Ga0077558

ncbi_submitter: University of Glasgow

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium Ga0077558


ncbi_country: Italy

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: marine metagenome


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Canada: Shelburne County; NS

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Streptomyces sp. B21-106

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Bulleidia extructa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_organism_name: uncultured Micavibrio sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: groundwater

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Anderseniibacteriota;x__unclassified Candidatus Anderseniibacteriota;s__Candidatus Anderseniibacteriota bacterium


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: JCVI


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: South Korea: Seoul

ncbi_isolation_source: wet soil

ncbi_organism_name: Sphingomonas anseongensis

ncbi_submitter: Hankyong National University


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: South Africa: Beatrix mine in Welkom district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Candidatus Altimarinus sp.

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;g__Candidatus Altimarinus;x__unclassified Candidatus Altimarinus;s__Candidatus Altimarinus sp.


ncbi_submitter: EMG


ncbi_organism_name: Nocardioides sp. NBC_00368

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Washington

ncbi_submitter: Max von Pettenkofer-Institute


ncbi_isolation_source: secretion

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Fenyang college of shanxi medical university


ncbi_organism_name: uncultured archaeon

ncbi_submitter: Center for Microbial Communities


ncbi_country: Singapore

ncbi_isolation_source: rectal

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: National University of Singapore and Genome Institute of Singapore


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Ruthenibacterium lactatiformans


ncbi_country: Russia: Dagestan

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_organism_name: Klebsiella sp. GG_Kp161

ncbi_submitter: Max Rubner-Institut


ncbi_country: Taiwan

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shanghai

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai municipal center for disease control and prevention


ncbi_country: Czech Republic: Lake Jiricka

ncbi_isolation_source: freshwater lake (reservoir)

ncbi_organism_name: Polynucleobacter sp. JS-JIR-II-50

ncbi_submitter: University of Innsbruck


ncbi_country: Israel

ncbi_isolation_source: stool

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_isolation_source: lake water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhizobium sp. Q54


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: NY

ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus DAR1158

ncbi_submitter: Broad Institute


ncbi_country: Sweden: Jonstorp

ncbi_isolation_source: gut

ncbi_organism_name: Bombilactobacillus mellifer

ncbi_submitter: Uppsala university


ncbi_organism_name: Pseudomonas atacamensis

ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Macrococcus capreoli

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: uncultured Nitrospirota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__environmental samples;s__uncultured Nitrospirota bacterium


ncbi_organism_name: Streptomyces cyaneofuscatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-388-A01

ncbi_submitter: Massachusetts Institute of Technology


ncbi_assembly_name: freshwater MAG --- MJ3_bin-038

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Butyricicoccus sp.


ncbi_organism_name: Spirillospora sp. NPDC050365


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yanofskyibacteriota;s__Candidatus Yanofskybacteria bacterium RIFCSPLOWO2_01_FULL_44_22


ncbi_country: China: Henan

ncbi_organism_name: Escherichia coli

ncbi_submitter: China CDC


ncbi_organism_name: Salaquimonas sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: National Jewish Health


ncbi_country: USA: FL

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_country: United Kingdom: Somerset

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: Acinetobacter nosocomialis


ncbi_country: Saudi Arabia: Thuwal

ncbi_isolation_source: roots of desert plants

ncbi_organism_name: Halomonas caseinilytica

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: marine

ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Ottowia sp.

ncbi_submitter: EMG


ncbi_country: India: Himachal Pradesh

ncbi_isolation_source: Exudates or Secretions of the Nose; Throat (Tonsil); Pharynx; Larynx; Wounds; Blood; Skin

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Serum Institute of India


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Pacific Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Sneathiella marina

ncbi_submitter: The Third institute of State Oceanic Administration (SOA)


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Alistipes putredinis


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID 254

ncbi_submitter: University Hospital Regensburg


ncbi_country: Austria

ncbi_isolation_source: intestinal tract

ncbi_organism_name: Escherichia coli

ncbi_submitter: IST Austria


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Vestfold Hospital Trust


ncbi_country: Estonia

ncbi_isolation_source: ear secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_organism_name: Filifactor sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Sichuan University


ncbi_organism_name: Streptomyces chartreusis

ncbi_submitter: Guang Xing University


ncbi_country: Brazil: Manaus

ncbi_isolation_source: endophytic of Paullinia cupana (Mart) Ducke

ncbi_organism_name: Streptomyces griseofuscus

ncbi_submitter: Universidade Federal de Mato Grosso


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;x__unclassified Candidatus Acidulodesulfobacterales;s__Candidatus Acidulodesulfobacterales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Selenomonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: France

ncbi_isolation_source: urine

ncbi_submitter: Rennes Hospital


ncbi_country: China: Zhejiang; Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Zhejiang university


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Candidatus Saganbacteria bacterium

ncbi_submitter: Universite Laval

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;x__Candidatus Saganbacteria;s__Candidatus Saganbacteria bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Xanthomarina sp. GH4-25

ncbi_submitter: BioPS Co., Ltd.


ncbi_organism_name: uncultured Bacteroidaceae bacterium


ncbi_organism_name: Candidatus Methylopumilus sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Jiangxi Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University College Cork


ncbi_organism_name: Corynebacterium tuberculostearicum

ncbi_submitter: University of York


ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Burkholderiaceae bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Ferruginibacter sp.


ncbi_country: USA: Ohio

ncbi_isolation_source: groundwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 779

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University Hospital Puerta del Mar


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Opitutia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Kluyvera georgiana


ncbi_country: Papua New Guinea: D Entrecasteaux Islands

ncbi_isolation_source: PNG CO2 seep-seep site

ncbi_organism_name: Candidatus Dadabacteria bacterium

ncbi_submitter: Australian Institute of Marine Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Dadabacteria;x__unclassified Candidatus Dadabacteria;s__Candidatus Dadabacteria bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Monash University


ncbi_country: India

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Christian Medical College


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Diarrheal patient

ncbi_submitter: University of Maryland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: Salt beef

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: SC


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cornell University


ncbi_submitter: Guangdong provincial center for disease control and prevention


ncbi_country: Russia

ncbi_isolation_source: not known


ncbi_isolation_source: Faeces


ncbi_country: USA: MO

ncbi_isolation_source: blood sample of individual with bacteremia

ncbi_organism_name: Escherichia coli MC6002

ncbi_submitter: The Genome Institute


ncbi_country: China: Shandong

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_assembly_name: IMG-taxon 2593339145 annotated assembly

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Rhodococcus sp. YH3-3

ncbi_submitter: Asano active enzyme molecule project, Toyama prefectural university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. YH3-3


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Beijing

ncbi_submitter: Peking University Third Hospital


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Marinovum sp.


ncbi_country: Spain

ncbi_isolation_source: Lung swab

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad de Murcia


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Wageningen Plant Research


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Ruminococcus sp. OM08-9BH

ncbi_submitter: BGI


ncbi_country: Fiji

ncbi_isolation_source: skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Melbourne


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Apple dumpster

ncbi_organism_name: Leuconostoc pseudomesenteroides

ncbi_submitter: Cornell University


ncbi_country: Germany: Hainich National Park; Hainich Critical Zone Exploratory

ncbi_isolation_source: groundwater from well H41 incubated with 12C bicarbonate for 70 days

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: Friedrich Schiller University Jena


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Anaerostipes excrementavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolate: SPRUCE 50

ncbi_organism_name: Candidatus Dormibacteria bacterium

ncbi_strain_identifiers: SPRUCE 50

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;x__unclassified Candidatus Dormibacteria;s__Candidatus Dormibacteria bacterium


ncbi_country: USA: WA

ncbi_isolation_source: blood from patient with bacteremia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile Y358

ncbi_submitter: Institute for Genome Sciences


ncbi_isolate: Fecal samples

ncbi_isolation_source: LBC

ncbi_strain_identifiers: Fecal samples


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: Singapore

ncbi_isolation_source: Whole live fish sold as snakehead-haruan; Muscle

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Singapore Streptococcus agalactiae working group


ncbi_country: China

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_submitter: Universidad Nacional Mayor de San Marcos


ncbi_country: Uganda

ncbi_organism_name: Mycobacterium tuberculosis Kc 9614

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis Kc 9614


ncbi_isolation_source: sheep meat

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Technische Universiteit Delft


ncbi_country: South Korea

ncbi_isolation_source: Environment

ncbi_submitter: Seoul National University


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sulfuricaulis sp.

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Tongue scraping

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: University of Queensland


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: AAFC


ncbi_organism_name: Salmonella sp. M9-2

ncbi_submitter: Zhejiang University


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_country: Switzerland: Geneva

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Geneva University Hospital


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Netherlands

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 1686

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_organism_name: Nitratireductor thuwali

ncbi_submitter: KAUST


ncbi_organism_name: Rhizobium anhuiense

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)