ncbi_country: China: Dongyin; Shandong Province; Shengli oilfield

ncbi_isolation_source: methanogenic consortium M82 from oily sludge

ncbi_organism_name: Smithella sp. M82

ncbi_submitter: Lei Cheng


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: uncultured Granulicella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


gtdb_representative: f

ncbi_assembly_level: Scaffold

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA

ncbi_isolation_source: Feral swine feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_organism_name: Paraburkholderia hospita

ncbi_submitter: Department of Engineering, Graduate School of Integrated Science and Technology, Shizuoka University


ncbi_organism_name: Neptunomonas phycophila

ncbi_submitter: Xiamen University


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Texas

ncbi_isolation_source: sinus swab

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_country: Germany: Koerzin

ncbi_isolation_source: feces

ncbi_submitter: Robert Koch Institute


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: University of Chicago


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: China: Shanghai

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes SHL011

ncbi_submitter: University of Maryland, College Park


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: FDA


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: stool

ncbi_submitter: University of Zurich


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Geobacillus stearothermophilus

ncbi_strain_identifiers: DSM 458

ncbi_submitter: University College Cork


ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Levyibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levyibacteriota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SRCAMB


ncbi_organism_name: Streptomyces virginiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Shandong Vocational Animal Science and Veterinary College


ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Gemmiger sp.

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_organism_name: Coxiella-like endosymbiont

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Enterococcus faecium OC2A-1

ncbi_submitter: The Genome Institute


ncbi_country: Italy: Sardinia

ncbi_isolation_source: milk from clinical mastitis-infected mammaries

ncbi_organism_name: Streptococcus ruminantium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: Rumen uncultured genome RUG11872

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Russia

ncbi_isolation_source: obtained in laboratory by selection from a strain isolated from a natural source

ncbi_organism_name: Brevibacillus laterosporus

ncbi_submitter: National Research Center "Kurchatov Institute"


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: China Agricultural University


ncbi_country: Australia

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_country: United Kingdom:Hertfordshire

ncbi_isolation_source: wound


ncbi_isolation_source: Cabernet Sauvignon

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_country: Estonia: Tartumaa

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA

ncbi_organism_name: Helicobacter bilis

ncbi_strain_identifiers: AAQJH

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Egypt

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: K5 after

ncbi_submitter: Cairo University


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Candidatus Schekmanbacteria bacterium

ncbi_submitter: California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Schekmaniibacteriota;x__unclassified Candidatus Schekmanbacteria;s__Candidatus Schekmanbacteria bacterium


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Bordetella pertussis B200


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Candidatus Phytoplasma melaleucae

ncbi_refseq_category: reference genome

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrXXV (Weeping tea tree witches'-broom group);s__Candidatus Phytoplasma melaleucae


ncbi_assembly_name: SDB Consortium Genome Bin 4

ncbi_country: USA: San Diego Bay Sediment

ncbi_isolate: SDB

ncbi_isolation_source: methanogenic consortium capable of long-chain paraffin degradation (SDB culture) enriched from contaminated sediments of San Diego Bay; California; degrades n-alkanes from C25 to C50

ncbi_organism_name: Candidatus Cloacimonas sp. SDB

ncbi_strain_identifiers: SDB

ncbi_submitter: University of Oklahoma

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;x__unclassified Candidatus Cloacimonas;s__Candidatus Cloacimonas sp. SDB


ncbi_organism_name: Shewanella algae

ncbi_submitter: Soochow University


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: South Korea: Seoul

ncbi_isolation_source: soil from wetland

ncbi_organism_name: Dechloromonas hankyongensis

ncbi_submitter: Hankyong National University

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Pantoea sp.


ncbi_country: China

ncbi_organism_name: Salinicoccus albus DSM 19776

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Salinicoccus;s__Salinicoccus albus;x__Salinicoccus albus DSM 19776


ncbi_country: China: Zhejiang

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: USA: Rantoul

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: marine environment

ncbi_organism_name: Enterovibrio norvegicus

ncbi_submitter: national institute of biology


ncbi_country: Portugal

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Instituto de Tecnologia Quimica e Biologica Antonio Xavier


ncbi_country: USA:Minnesota; Rochester

ncbi_isolate: CIM:MAG 413

ncbi_organism_name: Clostridiales bacterium

ncbi_strain_identifiers: CIM:MAG 413

ncbi_submitter: Mayo Clinic


ncbi_organism_name: Bacillus sp. FSL H8-0534

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL H8-0534


ncbi_country: Ireland

ncbi_organism_name: Oscillibacter sp. MCC667

ncbi_submitter: University College Cork


ncbi_country: Greece: Nikitas

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_country: Switzerland: Kanton Zuerich

ncbi_isolation_source: apple blossom

ncbi_organism_name: Pseudomonas orientalis

ncbi_submitter: Agroscope


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Pig farm

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_organism_name: Acinetobacter johnsonii


ncbi_isolation_source: feces of piglets

ncbi_organism_name: Escherichia coli

ncbi_submitter: South-Central Minzu University


ncbi_country: France

ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: CDC


ncbi_country: Republic of the Congo: Pointe-Noire

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Paracoccus denitrificans


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFCSPLOWO2_01_FULL_42_17


ncbi_country: USA

ncbi_organism_name: Sphingomonas sp. ABOLE

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: feces

ncbi_organism_name: Lactobacillus intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Red Deer

ncbi_organism_name: Brevibacterium casei

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_organism_name: uncultured archaeon

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: The University of Melbourne


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus


ncbi_isolate: AOP34_AQ2_surf _bin _7

ncbi_organism_name: Brevibacterium yomogidense

ncbi_strain_identifiers: AOP34_AQ2_surf _bin _7

ncbi_submitter: Genoscope


ncbi_country: Brazil: Belem

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: Ectopseudomonas khazarica

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Deltaproteobacteria bacterium UBA6930

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium UBA6930


ncbi_isolation_source: pericardium

ncbi_submitter: Anses


ncbi_assembly_name: freshwater MAG --- KT3_bin-540

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcus sp.

ncbi_submitter: BILS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Neisseria polysaccharea

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudolactococcus raffinolactis

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: South Korea: Jeongseon

ncbi_organism_name: Pectobacterium carotovorum subsp. carotovorum

ncbi_submitter: Rural Development Administration


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Roseburia faecis

ncbi_submitter: UIUC


ncbi_organism_name: Streptomyces swartbergensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacillus wiedmannii


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Microbacterium sp. ZKA21

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Xiamen University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Paracoccus aerius

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Pseudomonas lundensis

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Kitasatospora sp. NPDC053057


ncbi_organism_name: Brucella ceti

ncbi_submitter: BioISI


ncbi_organism_name: Lysinibacillus xylanilyticus


ncbi_organism_name: Staphylococcus pseudoxylosus

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Arcanobacterium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Rasiella sp. SM2506

ncbi_submitter: Shandong Uniservity


ncbi_organism_name: Candidatus Onthoplasma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Christensenellales;f__Christensenellaceae;x__Christensenellaceae incertae sedis;g__Candidatus Onthoplasma;x__unclassified Candidatus Onthoplasma;s__Candidatus Onthoplasma sp.


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Verrucomicrobiota bacterium


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment; starting time

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Priestia koreensis

ncbi_strain_identifiers: MER 13

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: Prosthecobacter sp.

ncbi_submitter: EPFL


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_assembly_name: freshwater MAG --- MJ-2014-D3_bin-495

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Enterobacter cloacae


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;x__environmental samples;s__uncultured candidatus Brocadiaceae bacterium


ncbi_country: China: Heilongjiang

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. FJAT-27225

ncbi_submitter: Fujian Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FJAT-27225


ncbi_country: Brazil: Salvador; Bahia

ncbi_organism_name: Leptospira yasudae

ncbi_submitter: Yale School of Public Health


ncbi_country: South Korea: Hongcheon

ncbi_isolation_source: leaf tissue

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: POSTECH


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_country: China: Liaocheng

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Liaocheng Center for Disease Control and Prevention


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 6519

ncbi_submitter: The Xanthomonas Threats project


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces halstedii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Italy: Sindia

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Monash University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_organism_name: Thermomonas sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of queensland


ncbi_country: USA: Kansas

ncbi_submitter: University of Guelph


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_country: France

ncbi_isolation_source: cheese (Comt)

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_strain_identifiers: CIRM-BIA 1374

ncbi_submitter: Brigham Young University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Xenorhabdus szentirmaii

ncbi_submitter: Goethe University


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: USA: DC

ncbi_isolation_source: Jejunal aspirate

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Iodobacter sp. LRB

ncbi_strain_identifiers: LRB

ncbi_submitter: Lycoming College


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Alcanivorax sp.

ncbi_submitter: EMG


ncbi_country: China

ncbi_organism_name: Salmonella sp. 1949

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: South Africa

ncbi_isolation_source: root nodule

ncbi_organism_name: Paraburkholderia strydomiana

ncbi_submitter: University of Pretoria


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Chthonomonadaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Shanghai

ncbi_isolation_source: urine

ncbi_submitter: Xinhua Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_country: USA

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Lawsonibacter sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Micavibrio sp.

ncbi_submitter: Stockholm University


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Streptomyces olivochromogenes

ncbi_strain_identifiers: NBRC 3561

ncbi_submitter: Research Institute of Green Science and Technology, Shizuoka University


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus T49198

ncbi_submitter: Broad Institute


ncbi_organism_name: Nocardia sp. NPDC051030

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Brazil: southwest Rio Grande do Sul

ncbi_organism_name: Bradyrhizobium sp. NAS80.1

ncbi_submitter: UFRGS


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_isolation_source: Tocosh; potatoes naturally fermented in a well near a water spring

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_strain_identifiers: CECT 9217

ncbi_submitter: UVEG


ncbi_organism_name: Gordonia jacobaea


ncbi_country: Denmark

ncbi_organism_name: Enterobacter asburiae

ncbi_strain_identifiers: AMA 590

ncbi_submitter: Anette M. Hammerum


ncbi_country: Switzerland

ncbi_isolation_source: soil

ncbi_organism_name: Xenorhabdus anantnagensis

ncbi_submitter: University of Neuchatel


ncbi_country: USA: California; San Diego Bay

ncbi_organism_name: Vibrio sp. MMG023

ncbi_submitter: San Diego State University


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Trento


ncbi_country: Cyprus

ncbi_organism_name: Saccharopolyspora soli

ncbi_submitter: Ondokuz Mayis University


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Thermosynechococcus sp. PKX91

ncbi_submitter: Academia Sinica


ncbi_country: South Korea: Seoul

ncbi_isolation_source: wet soil

ncbi_organism_name: Sphingomonas caseinilyticus

ncbi_submitter: Hankyong National University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Norway

ncbi_isolation_source: raw chicken

ncbi_organism_name: Pseudomonas carnis

ncbi_submitter: Nofima


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: University of Mauritius


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Phocaeicola sp. HCN-6420

ncbi_submitter: Seoul National University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep sea mooring chain biofilm

ncbi_organism_name: Desulfocapsa sp.

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_organism_name: Yersinia pseudotuberculosis B-6863

ncbi_submitter: UPSUD


ncbi_country: India: Kushmaur

ncbi_isolation_source: Rotten Soil

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: Uttaranchal University


ncbi_organism_name: Marisediminicola sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Nanjing

ncbi_isolation_source: laboratory-scale bioreactor denitrification and anammox communities

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: NanJing University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Japan

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Yakult Central Institute


ncbi_country: USA: St. Louis

ncbi_isolation_source: Connective tissue

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: China: Sichuan

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Streptomyces calvus

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Candidatus Delongbacteria bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Delongiibacteriota;x__unclassified Candidatus Delongbacteria;s__Candidatus Delongbacteria bacterium


ncbi_organism_name: Lachnospiraceae bacterium LCP25S3_F11

ncbi_submitter: Quadram Institute Bioscience


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: uncultured Cytophagia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;x__environmental samples;s__uncultured Cytophagia bacterium


ncbi_organism_name: uncultured Porticoccaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Lebanese American university


ncbi_organism_name: uncultured Enterobacterales bacterium


ncbi_assembly_level: Chromosome

ncbi_assembly_name: R-75715 assembly

ncbi_organism_name: Burkholderia sola

ncbi_submitter: LM-UGent


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_country: Netherlands

ncbi_isolation_source: eggs of a tick infected in nature

ncbi_organism_name: Borrelia miyamotoi

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Wilmar International Limited


ncbi_country: China: Wuhan

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhongnan Hospital of Wuhan University


ncbi_assembly_name: Kle_pne IVRI_FBI_611

ncbi_submitter: Indian Veterinary Research Institute


ncbi_country: Australia

ncbi_isolation_source: endotracheal aspirate

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The University of Queensland


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: SIP-labeled bacteria involved in mucosal sugar uptake in the mouse colon

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Vienna


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Bacteroides sp. CAG:598

ncbi_submitter: DTU


ncbi_submitter: EMG


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of British Columbia


ncbi_country: Pakistan: Multan

ncbi_isolation_source: Tannery effluent

ncbi_organism_name: Alcaligenes phenolicus

ncbi_submitter: Fatima Jinnah Women University


ncbi_country: Pakistan: Multan; Punjab

ncbi_isolation_source: leaves

ncbi_organism_name: Pantoea sp. M_10

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: China: Shenzhen

ncbi_organism_name: Clostridium tertium

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Staphylococcus pasteuri

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: CA

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrosomonadales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Netherlands: Mokbaai

ncbi_isolation_source: marine sediment

ncbi_organism_name: Candidatus Electrothrix gigas

ncbi_submitter: Aarhus University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_organism_name: Sutterella wadsworthensis


ncbi_organism_name: Priestia flexa

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Netherlands: Rotterdam

ncbi_isolation_source: granules from the full-scale anammox reactor of Dokhaven-Sluisjesdijk wastewater treatment plant; further enriched at TU Delft in a chemostat over two months prior to sampling

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: SciBear LLC


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Nevskiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Ireland: Cork

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University College Cork


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Desulfarculaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Colombia: Pereira

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_country: USA

ncbi_isolation_source: stool sample from patient with cholera

ncbi_organism_name: Vibrio cholerae O1 str. 2009V-1046

ncbi_submitter: Public Health Agency of Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 str. 2009V-1046


ncbi_country: South Korea: Jeju

ncbi_isolation_source: Baengnokdam Summit Crater Area; Mt. Halla

ncbi_organism_name: Brevibacterium sp. JNUCC-42

ncbi_submitter: Jeju National University


ncbi_organism_name: Achromobacter insuavis

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: desert soil

ncbi_organism_name: Rufibacter aurantiacus

ncbi_strain_identifiers: SYSU D00433

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Australia

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_country: USA: Chicago; IL

ncbi_isolation_source: water

ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Melioribacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Brazil

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: University of Parma


ncbi_organism_name: Lysinibacillus zambalensis

ncbi_submitter: University of the Philippines Diliman


ncbi_country: Canada

ncbi_isolation_source: nasal swab

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: CAU


ncbi_isolation_source: river water

ncbi_organism_name: Pseudomonas sp. W15Feb9B

ncbi_submitter: Florida A&M University


ncbi_submitter: Quadram Institutte


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_country: South Korea: Hongcheon

ncbi_isolation_source: Doenjang

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Microbial Institute for Fermentation Industry

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Candidatus Peribacteria bacterium

ncbi_submitter: Stockholm University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Helicobacter ganmani

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Leptospirillum ferrooxidans

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: USA: MA

ncbi_organism_name: Bordetella holmesii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Ignavibacteriales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Alberta


ncbi_country: Germany: Goettingen

ncbi_isolation_source: water surface of oligotrophic pond

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Georg-August-University Goettingen


ncbi_country: Serbia

ncbi_isolation_source: urine

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: United Kingdom

ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: SC


ncbi_submitter: Universidade de Tras-os-Montes e Alto Douro


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0459

ncbi_submitter: Broad Institute


ncbi_organism_name: Salinimicrobium sp.

ncbi_submitter: Tang lab


ncbi_country: Italy: Trento; Comano Thermal Spring

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: University of Trento


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Flavobacteriia bacterium


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; Guaymas Basin; Black smoker hydrothermal vent

ncbi_isolation_source: marine hydrothermal chimney wall TVG10

ncbi_organism_name: Mizugakiibacter sp.

ncbi_submitter: Environmental Microbiology Lab


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thiohalobacter sp.

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Dorea longicatena

ncbi_submitter: EMG


ncbi_country: Denmark

ncbi_organism_name: Leptospira borgpetersenii serovar Ballum

ncbi_submitter: Massey University


ncbi_country: Australia: Adelaide

ncbi_isolation_source: sinus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Adelaide Medical School


ncbi_country: China: Yunnan

ncbi_submitter: Yunnan Provincial Centre for Disease Control and Prevention


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0249R


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Lentisphaerota bacterium

ncbi_submitter: University of California, Santa Barbara

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerota bacterium


ncbi_isolate: AOP19_E1_surf _bin _6

ncbi_organism_name: Glutamicibacter arilaitensis

ncbi_strain_identifiers: AOP19_E1_surf _bin _6

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Ulvibacter sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Streptomyces longwoodensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Sichuan

ncbi_isolation_source: soil

ncbi_organism_name: Peribacillus loiseleuriae

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_organism_name: Aminobacterium sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Nacional de Rehabilitacion Luis Guillermo Ibarra Ibarra


ncbi_country: China

ncbi_isolation_source: bile

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese center for disease control and prevention


ncbi_isolation_source: Well water

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Universiti Sains Malaysia


ncbi_country: Jersey

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Bath


ncbi_organism_name: Enterococcus casseliflavus


ncbi_country: South Korea

ncbi_organism_name: Algoriphagus marincola DSM 16067

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus;s__Algoriphagus marincola;x__Algoriphagus marincola DSM 16067


ncbi_organism_name: Escherichia coli

ncbi_submitter: Capital institution of Pediatrics


ncbi_isolation_source: Spine

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: Church and Dwight


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Tel Aviv University


ncbi_organism_name: Akkermansia muciniphila


ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Dehalococcoidales bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: University Hospital Muenster


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: Brazil: Dourados

ncbi_submitter: LNCC


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Sphingobium sp.

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Candidatus Profftella armatura

ncbi_submitter: International Psyllid Genome Consortium

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Betaproteobacteria;o__;f__;g__Candidatus Profftella;s__Candidatus Profftella armatura

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Profftella;s__Candidatus Profftella armatura


ncbi_isolate: metabat2_coassembly_bwa.654 MAG

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_strain_identifiers: metabat2_coassembly_bwa.654 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: South Africa: Msukaligwa; Sheepmoor Village

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: North-west University


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Desulfuromonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG10680

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_submitter: University of California, Santa Barbara


ncbi_country: USA: Boston; MA

ncbi_isolation_source: bronchial alveolar lavage

ncbi_organism_name: Staphylococcus aureus M1485

ncbi_submitter: Broad Institute


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: Pseudomonas aeruginosa NCMG1179

ncbi_submitter: National Center for Global Health and Medicine


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: HBUT-L

ncbi_submitter: hbut


ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: EMG


ncbi_country: Paraguay: Coronel Oviedo

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_country: Austria

ncbi_isolation_source: intestinal tract

ncbi_submitter: IST Austria


ncbi_submitter: Universidade de Sao Paulo


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Yersinia proxima

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: river

ncbi_organism_name: Rhizobium sp. G21

ncbi_submitter: Kunsan National University


ncbi_country: Italy: Bussolengo

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium primatium

ncbi_strain_identifiers: TRE 1

ncbi_submitter: University of Bologna


ncbi_organism_name: uncultured Brachyspira sp.


ncbi_country: Pacific Ocean: Chile-Peru Current Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Sandaracinus sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Rothia sp.


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: nasopharynx


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: EBI


ncbi_country: United Kingdom

ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Citrobacter farmeri

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_submitter: Texas A&M University


ncbi_country: China: Shandong

ncbi_submitter: Yangzhou University


ncbi_isolation_source: fermented sausages

ncbi_organism_name: Weissella kandleri

ncbi_submitter: Shanghai Majorbio


ncbi_organism_name: Megamonas hypermegale

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: New Zealand: Otago

ncbi_isolation_source: Dog with mastitis

ncbi_organism_name: Enterococcus faecalis ARO1/DG

ncbi_submitter: Otago University


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Trento


ncbi_country: Russia: Moscow

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: USA: Rio Grande under the bridge between Brownsville TX and Matamoros; Mexico.

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_organism_name: Pedobacter sp.

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_country: Uruguay: Laguna Blanca

ncbi_isolation_source: freshwater

ncbi_organism_name: Cylindrospermopsis raciborskii MVCC14

ncbi_submitter: Pontificia Universidad Catolica de Chile


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Escherichia coli MS 198-1

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_organism_name: Shigella sp. FC6511

ncbi_submitter: Ministry of Science and Technology of China


ncbi_country: China: Hunan Province

ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Blautia sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Thermus sp.

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Streptomyces sp. NPDC006684

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: USA: TX; College Station

ncbi_isolation_source: surface-sterilized wheat seeds

ncbi_organism_name: Enterobacter cloacae S611

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Arthrobacter citreus

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: Saudi Arabia: Makkah

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Umm Al-Qura University


ncbi_isolation_source: human

ncbi_organism_name: Vibrio parahaemolyticus 10290

ncbi_submitter: UTRECHT UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus 10290


ncbi_country: Switzerland: Lausanne

ncbi_isolation_source: adult honey bee queen gut

ncbi_organism_name: Commensalibacter sp. ESL0382

ncbi_submitter: University of Lausanne


ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Nimes University Hospital


ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0015

ncbi_submitter: Broad Institute


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Collinsella tanakaei

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: Canada:Fort McMurray

ncbi_isolation_source: Sand Stone

ncbi_organism_name: Nocardioidaceae bacterium UBA4001

ncbi_submitter: University of Queensland


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_assembly_name: De novo assembly of single-cell genomes

ncbi_genome_category: derived from single cell

ncbi_isolation_source: raw seawater

ncbi_organism_name: Prochlorococcus sp. scB245a_518O7

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: blood

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Seoul

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Yonsei University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Corynebacterium imitans


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Thermoflexales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Pseudomonas sp. ICMP 17674

ncbi_submitter: Charles Sturt University


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: seawater

ncbi_organism_name: Photobacterium sp. GB-36

ncbi_submitter: FDA/CFSAN


ncbi_country: India: Assam; Jorhat

ncbi_organism_name: Alcaligenes nematophilus

ncbi_submitter: CSIR-North East institute of Science and Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Nonomuraea sp. NPDC023979

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Portugal: National Park of Peneda-Geres; Rio Cabril

ncbi_isolation_source: forest soil

ncbi_organism_name: Pseudomonas sp. UMC631

ncbi_submitter: Universidade do Minho


ncbi_country: South Africa: Johannesburg

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: NHLS Research Trust


ncbi_organism_name: Xylella fastidiosa subsp. fastidiosa

ncbi_submitter: USDA


ncbi_country: China: Wenzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_submitter: USDA-ARS-USMARC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: China: Henan

ncbi_isolation_source: liver

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Citrobacter cronae

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: CIAD, A.C.


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: NC

ncbi_isolation_source: Market Swine

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: CVM N59606F

ncbi_submitter: FDA


ncbi_country: China: Guangzhou City; Guangdong Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: sheep gut metagenome


ncbi_isolation_source: human gut

ncbi_organism_name: Listeria innocua


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Nitrospirota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__environmental samples;s__uncultured Nitrospirota bacterium


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Mammaliicoccus lentus

ncbi_strain_identifiers: BARC

ncbi_submitter: Bhabha Atomic Research Centre


ncbi_organism_name: uncultured Planctomycetales bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: burned soil

ncbi_organism_name: Herbaspirillum sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: Stanford University


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Lentisphaeria bacterium


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Canada: Guelph

ncbi_isolation_source: soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_country: Thailand: Suphanburi

ncbi_isolation_source: tree bark

ncbi_organism_name: Lentilactobacillus terminaliae

ncbi_submitter: Chulalongkorn University


gtdb_type_species_of_genus: t

ncbi_country: Belgium: Ronse

ncbi_isolation_source: Root nodules of a roadside Black locust

ncbi_organism_name: Tardiphaga robiniae

ncbi_submitter: Indigo Agriculture


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: Russia: Moscow

ncbi_isolation_source: lumbar liquor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SRCAMB


ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Colombia

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas phaseoli;x__Xanthomonas phaseoli pv. manihotis;x__Xanthomonas phaseoli pv. manihotis str. UA536


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Imported/domestic retail Oyster

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Agathobacter rectalis


ncbi_country: Russia: Uzon Caldera; Kamchatka; Arkashin hot spring

ncbi_isolation_source: hot spring

ncbi_organism_name: Thermodesulfobium narugense

ncbi_submitter: Laetitia Wilkins's shared submissions


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacillus sonorensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: USA: CO

ncbi_isolation_source: feces goose

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Sulfuricellaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Chryseobacterium cucumeris

ncbi_submitter: College of Resources and Environmental science


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae BIDMC 7B

ncbi_strain_identifiers: BIDMC 7B

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae BIDMC 7B


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: brown biofilm from alkaline hot spring

ncbi_organism_name: Thermodesulfobacteriaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: USA: Michigan

ncbi_organism_name: Rhodococcoides fascians 02-815

ncbi_submitter: Oregon State University


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_organism_name: Bacillus paralicheniformis


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: USA: Nashville; Tennessee

ncbi_isolation_source: Healthy infant urine

ncbi_organism_name: Actinotignum sanguinis

ncbi_submitter: Vanderbilt University Medical Center


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Kenya

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_assembly_name: Rumen uncultured genome RUG11536

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris


ncbi_country: USA: Yellowstone National Park

ncbi_organism_name: Rubrobacter taiwanensis

ncbi_strain_identifiers: Yellowstone

ncbi_submitter: Bellevue University


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: Missouri; St. Louis

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium intracellulare

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA: NY

ncbi_isolation_source: water

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Yantai University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Africa: King Dinuzulu Hospital

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis NIH05001

ncbi_submitter: NISC - NIH Intramural Sequencing Center


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester - thermal hydrolysis pre-treatment sludge

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Shandong University


ncbi_country: USA: Texas

ncbi_isolation_source: guttural pouch

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Mucispirillum sp.


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Synechococcaceae bacterium WB5_2A_257

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Chthoniobacterales bacterium

ncbi_submitter: Spribille Lab


ncbi_country: Japan

ncbi_organism_name: Pseudomonas syringae pv. solidagae

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. solidagae


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1000


ncbi_isolation_source: rectal swab

ncbi_organism_name: Chlamydia suis

ncbi_submitter: University of Zurich


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: USA: Florida

ncbi_isolation_source: leaf from transplant house

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_organism_name: Rhizobium sp.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Afifellaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Pacific Ocean: Chile-Peru Current Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: Tara Oceans Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Methylocella sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Limosilactobacillus vaginalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Roseburia inulinivorans


ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: Monash University


ncbi_organism_name: Pantoea dispersa

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Phocaeicola plebeius


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: MAMI


ncbi_organism_name: Tepidimonas sp. HKU79

ncbi_submitter: HKU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Tepidimonas;x__unclassified Tepidimonas;s__Tepidimonas sp. HKU79


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Geodermatophilaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: UNITED STATES ARMY MEDICAL RESEARCH DIRECTORATE-KENYA


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: Meizhou People's Hospital


ncbi_organism_name: uncultured Victivallis sp.


ncbi_organism_name: Pectinatus frisingensis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_assembly_name: freshwater MAG --- AM-2014-D5_bin-366

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolate: Bosea sp. 7B

ncbi_organism_name: Bosea sp. 7B

ncbi_strain_identifiers: Bosea sp. 7B

ncbi_submitter: Station Biologique de Roscoff - Sorbonne Universite/CNRS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. 7B


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; solid retention time of 6 days

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Farm

ncbi_submitter: Pennsylvania State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. salamae;x__Salmonella enterica subsp. salamae serovar 42:r:-


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Kaistella sp.


ncbi_country: USA: MI

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: terrestrial

ncbi_submitter: University of Queensland


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_country: USA: CA

ncbi_isolation_source: pork chop

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis;x__Salmonella enterica subsp. enterica serovar Infantis str. CVM N19983


ncbi_country: USA: Brevard; FL

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Clostridium botulinum B1 str. Okra

ncbi_strain_identifiers: Okra

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium botulinum;x__Clostridium botulinum B;x__Clostridium botulinum B1;x__Clostridium botulinum B1 str. Okra


ncbi_country: China

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: University of Science and Technology of China


ncbi_country: Czech Republic: Central Bohemian Region

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Charles University in Prague


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Respiratory Tract

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: SC


ncbi_organism_name: Acidithiobacillus ferrianus

ncbi_strain_identifiers: IBUN Ppt12

ncbi_submitter: NATIONAL UNIVERSITY OF COLOMBIA


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Academia Sinica


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Acidulodesulfobacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acidulodesulfobacterium;x__unclassified Candidatus Acidulodesulfobacterium;s__Candidatus Acidulodesulfobacterium sp.


ncbi_country: Korea

ncbi_isolation_source: Korean traditional fermented seafood jeotgal

ncbi_organism_name: Mesobacillus jeotgali

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: USA: PA

ncbi_isolation_source: feces


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: Venous Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_country: China: Shanghai

ncbi_isolation_source: lavage fluid

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Kingella kingae

ncbi_submitter: INSERM, IAME, UMR 1137


ncbi_organism_name: Paraburkholderia sp. OAS925

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Butyricimonas faecihominis


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Surrey


ncbi_assembly_name: NSMM

ncbi_isolation_source: Nitrifying granule

ncbi_organism_name: Nitrosomonas mobilis

ncbi_submitter: WASEDA university


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R575;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Streptomyces sp. NBC_00459

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nanjing Agriculture University


ncbi_assembly_name: IMG-taxon 2693429916 annotated assembly

ncbi_organism_name: Bacteroides faecis MAJ27

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Lacticaseibacillus casei

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_isolate: C1 bin10

ncbi_organism_name: Succinivibrio dextrinosolvens

ncbi_strain_identifiers: C1 bin10

ncbi_submitter: China Agricultural University


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: coastal sediment

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_assembly_name: Rumen uncultured genome RUG10806

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Italy: Calvenzano (BG)

ncbi_isolation_source: intestine content

ncbi_organism_name: Clostridium botulinum C/D

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_organism_name: Escherichia coli

ncbi_submitter: National institutes of Food and Drug Control


ncbi_organism_name: uncultured Acidaminococcus sp.


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Veterinary Research Institute


ncbi_country: Colombia: Medellin

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_country: Norway

ncbi_isolation_source: Laboratory

ncbi_submitter: UiT The Arctic University of Norway


ncbi_isolation_source: anammox sludge

ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: East China of university of science and technolongy


ncbi_country: USA: NYC

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_country: Pacific Ocean: Mariana trench

ncbi_isolation_source: sea water

ncbi_organism_name: Marinobacter salinexigens

ncbi_submitter: Ocean University of China


ncbi_country: USA: California; Los Angeles County

ncbi_isolation_source: urine

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: China: Fujian

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Ensifer sp. Root142

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Sulfuricurvum sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: wound


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: USA: St. Louis

ncbi_isolation_source: Endovascular

ncbi_organism_name: Acinetobacter variabilis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Japan

ncbi_isolation_source: feces from an infant

ncbi_organism_name: Bifidobacterium breve MCC 1454

ncbi_submitter: Food Science and Technology Institute, Morinaga Milk Industry Co., Ltd


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Dehalococcoides mccartyi GY50

ncbi_submitter: National University of Singapore


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: University of Duisburg Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Larissa


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Henriciella pelagia

ncbi_submitter: Tang lab


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Health Research Institutes


ncbi_isolation_source: lake water

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: Microba


ncbi_organism_name: Calditrichia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Erysipelothrix sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_submitter: Institut Pasteur


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S119

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S119


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Finland: Helsinki

ncbi_isolation_source: blood

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: University of Helsinki


ncbi_country: Russia: the Uzon caldera; Kamchatka

ncbi_isolation_source: hot-spring sediments

ncbi_organism_name: Anoxybacillus sp. KU2-6(11)

ncbi_submitter: THE INSTITUTE OF CYTOLOGY AND GENETICS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Moheibacter lacus

ncbi_submitter: Max Planck Institute for Biology


ncbi_isolation_source: Biogas reactor

ncbi_organism_name: Syntrophomonas wolfei

ncbi_submitter: HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ.


ncbi_organism_name: Streptomyces sp. NPDC020800

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: The Edison Family Center for Genome Sciences and Systems Biology


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Waterloo


ncbi_assembly_name: Rumen uncultured genome RUG13351

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: Virgibacillus pantothenticus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: Nanjing Agricultural University