ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Stutzerimonas stutzeri


ncbi_assembly_level: Contig

ncbi_organism_name: Alistipes communis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Rouxiella badensis

ncbi_submitter: University of Wisconsin-Madison


ncbi_assembly_level: Complete Genome

ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella sp. 2018103

ncbi_submitter: Fujian Provincial Center for Disease Control and Prevention


gtdb_representative: t

ncbi_organism_name: Vibrio pelagius

ncbi_refseq_category: reference genome

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University

ncbi_type_material_designation: assembly from type material


ncbi_country: Denmark

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_strain_identifiers: phage resistant V3-5

ncbi_submitter: University of Copenhagen


ncbi_country: Russia: Moscow

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: USA: Texas

ncbi_isolation_source: laboratory

ncbi_organism_name: Nocardia nova

ncbi_submitter: Rice University


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-397

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_strain_identifiers: new MAG-397

ncbi_submitter: Micoorganism


ncbi_country: New Caledonia

ncbi_isolation_source: soil

ncbi_organism_name: Leptospira meyeri

ncbi_submitter: Institut Pasteur Montevideo


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: France: Normandy

ncbi_isolation_source: auricular

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: LABEO


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Pediatric Research and Clinical Center for Infectious Diseases


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Queensland


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Kiloniellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: California

ncbi_isolation_source: abcess fluid

ncbi_organism_name: Campylobacter pinnipediorum subsp. pinnipediorum

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Bacteroides graminisolvens

ncbi_submitter: CLUE-TERRA


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0460R

ncbi_submitter: Broad Institute


ncbi_country: Norway: Viken

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: FCB group bacterium

ncbi_submitter: Lab of Microbial Oceanography

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__unclassified FCB group;s__FCB group bacterium


ncbi_isolation_source: Diarrheal patient

ncbi_submitter: University of Maryland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_assembly_name: Salmonella enterica CVM N31412-SQ v1.0

ncbi_country: USA: PA

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T32092


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Stanford University


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Nebraska

ncbi_organism_name: Moraxella bovis

ncbi_submitter: USDA/ARS


ncbi_country: Netherlands: Rotterdam

ncbi_isolation_source: granules from the full-scale anammox reactor of Dokhaven-Sluisjesdijk wastewater treatment plant; further enriched at TU Delft in a chemostat over two months prior to sampling

ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: SciBear LLC


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 323

ncbi_organism_name: Staphylococcus simulans

ncbi_strain_identifiers: SNUC 1395

ncbi_submitter: University of Calgary


ncbi_organism_name: Paenibacillus macerans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Candidatus Tumulicola sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: China: Shandong

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Pseudomonas asiatica

ncbi_submitter: Qilu University of Technology (Shandong Academy of Sciences)


ncbi_country: Iraq: Hillah city; Babylon Province.

ncbi_isolation_source: Cholera patient

ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_strain_identifiers: Inaba IN2

ncbi_submitter: University of Babylon / College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes ABC020021452

ncbi_submitter: Broad Institute


ncbi_submitter: Research Institute for Tropical Medicine


ncbi_country: Germany

ncbi_isolation_source: feces (Ovis aries)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0673


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada: Alberta

ncbi_organism_name: Thiobacillus sp.


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Arthrobacter oryzae


ncbi_isolation_source: water

ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_country: Thailand

ncbi_isolation_source: saline paddy soils

ncbi_organism_name: Rhodopseudomonas palustris

ncbi_submitter: Faculty of Science, Prince of Songkla University


ncbi_country: China

ncbi_isolation_source: ascites fluid

ncbi_submitter: Swansea University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_country: Taiwan: Renai Township; Nantou County

ncbi_organism_name: Thermosynechococcus sp. JY1339

ncbi_submitter: Academia Sinica


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Xiamen University


ncbi_country: Burkina Faso:Nouna Health District

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: Halomonas salifodinae

ncbi_submitter: Universidad Nacional Autonoma de Mexico Posgrado en Ciencias Biologicas


ncbi_isolate: C5 bin16

ncbi_organism_name: Bacteroidales bacterium

ncbi_strain_identifiers: C5 bin16

ncbi_submitter: China Agricultural University


ncbi_country: China: Nanjing

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University College Cork


ncbi_country: Puerto Rico: HATILLO

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Northern Arizona University


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter coli


ncbi_assembly_name: Campylobacter coli CVM N3506 v1.0

ncbi_country: USA: TN

ncbi_isolation_source: Chicken Breast

ncbi_strain_identifiers: CVM N3506

ncbi_submitter: FDA


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Dankook University


ncbi_isolation_source: abortion

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Grotta Nuova del Rio Garrafo cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Rikenella microfusus

ncbi_submitter: University Duisburg-Essen


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Butyrivibrio sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Veillonellaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Pseudomonas sp. ER28

ncbi_submitter: University of Calgary


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Nevada

ncbi_isolation_source: lung

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: USDA/ARS/National Animal Disease Center


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: SCOPE


ncbi_isolation_source: forest soil

ncbi_organism_name: Pseudonocardiales bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA

ncbi_organism_name: Pseudoxanthomonas sp. PXM01

ncbi_submitter: University of Chicago


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Hawaii; Kaneohe Bay

ncbi_isolation_source: coral

ncbi_organism_name: Pseudoalteromonas ardens

ncbi_submitter: Southern Oregon University


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_submitter: Sichuan University


ncbi_country: USA: South Carolina

ncbi_isolation_source: bioreactor using biocathode as sole electron donor and carbon dioxide as sole carbon source; pH was maintained at 7.0

ncbi_organism_name: Acetobacterium sp. MES1

ncbi_submitter: Argonne National Laboratory


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces sp. NPDC007070

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: oxycline seawater

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_country: India: Unique Biotech Limited; Hyderabad

ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Unique Biotech Limited


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei STW 214

ncbi_strain_identifiers: STW 214

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Xingyi City; Guizhou

ncbi_isolation_source: Karst cave soil samples

ncbi_organism_name: Microlunatus speluncae

ncbi_strain_identifiers: SYSU K12189

ncbi_submitter: Sun Yat-sen University


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri 2a

ncbi_submitter: Academy of Military Medical Sciences


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: tidal flat sediment

ncbi_organism_name: Roseovarius aestuariivivens

ncbi_submitter: Third Institute of Oceanography


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: addis ababa university


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG14936

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Czech Republic

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CEITEC VFU


ncbi_country: Italy: Bologna

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_organism_name: Escherichia albertii

ncbi_submitter: Kurume University School of Medicine


ncbi_organism_name: Aminobacter ciceronei

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Doudnabacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;x__unclassified Candidatus Doudnabacteria;s__Candidatus Doudnabacteria bacterium


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: biofilm

ncbi_organism_name: Anaerolineaceae bacterium UBA2274

ncbi_submitter: University of Queensland


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: liver

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences


ncbi_country: Egypt: 10th of Ramadan city; Ash Sharqia Governorate

ncbi_isolation_source: experiment

ncbi_organism_name: Enterobacter roggenkampii

ncbi_strain_identifiers: FACU 2

ncbi_submitter: Faculty of Agriculture, Cairo University


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Netherlands

ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_isolate: Sfag

ncbi_organism_name: Candidatus Symbiodolus clandestinus

ncbi_strain_identifiers: Sfag

ncbi_submitter: Max Planck Institute for Chemical Ecology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;x__Enterobacterales incertae sedis;g__Candidatus Symbiodolus;s__Candidatus Symbiodolus clandestinus


ncbi_organism_name: Proteiniphilum sp.

ncbi_submitter: University of Iowa


ncbi_country: Romania: Movile Cave

ncbi_isolation_source: Lower gallery with a lake; inside a wall diverticulum; 1 m above the cave floor

ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: Faculty of Biology and Geology, Babes-Bolyai University of Cluj-Napoca


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: the shrimp farm in eastern Thailand

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: BIOTEC


ncbi_organism_name: Campylobacter sp. RM19073

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Japan

ncbi_organism_name: Streptobacillus moniliformis

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Neptuniibacter pectenicola

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_country: Malaysia

ncbi_isolation_source: Wound Swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Malaya


ncbi_country: Puerto Rico: CEIBA

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Desulfosporosinus sp.

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_country: Germany

ncbi_isolation_source: Wound swab foot

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SurvCARE


ncbi_country: USA: near Point Barrow; Alaska

ncbi_isolation_source: sea ice

ncbi_organism_name: Alteromonas sp. MB-3u-76

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: Austria

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: FOI Swedish Defence Research Agency


ncbi_isolation_source: termite gut

ncbi_organism_name: Candidatus Desulfovibrio trichonymphae

ncbi_submitter: Department of Biological Sciences Graduate School of Bioscience and Biotechnology Tokyo Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: oil production facility

ncbi_organism_name: Thermodesulfobacterium commune

ncbi_submitter: University of Queensland


ncbi_country: China: Guide

ncbi_isolation_source: adult honey bee worker gut

ncbi_organism_name: Lactobacillus sp. B4026

ncbi_submitter: China Agricultural University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Wilmar International Limited


ncbi_country: Hungary: Kecskemt

ncbi_isolation_source: Anaerobic sludge from Kecskemt Biogas Plant

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Szeged


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-2478

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_assembly_level: Chromosome

ncbi_organism_name: Stutzerimonas zhaodongensis

ncbi_submitter: Sandia National Laboratories


ncbi_organism_name: Sphingomonas yabuuchiae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Rickettsia aeschlimannii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: uncultured Anaerolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_organism_name: uncultured Woeseiaceae bacterium


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Phocaeicola coprophilus


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: USA: Colorado

ncbi_isolation_source: produced fluids from hydraulically fractured shales DJB-2 day 1480

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The Ohio State University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lentisphaerales bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Bacteroidetes bacterium UBA1860

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium UBA1860


ncbi_organism_name: Serratia nematodiphila

ncbi_submitter: Bielefeld University


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: Nanjing University


ncbi_country: Slovenia: Piran; Adriatic Sea; Gulf of Piran

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Firmicutes bacterium UBA5420

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA5420


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: freshwater

ncbi_organism_name: Phycisphaerales bacterium


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: concordia university


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: terrestrial

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Sweden

ncbi_isolation_source: feces

ncbi_organism_name: Weissella confusa

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Odense University Hospital


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: INRA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston; MA

ncbi_isolation_source: tip

ncbi_organism_name: Staphylococcus aureus M0866

ncbi_submitter: Broad Institute


ncbi_country: Colombia: Bogota

ncbi_organism_name: Escherichia coli

ncbi_submitter: International Center for Microbial Genomics - Universidad El Bosque


ncbi_country: Netherlands

ncbi_isolation_source: bioreactor under electrogenic and nitrate-reducing conditions

ncbi_organism_name: Gallionellaceae bacterium

ncbi_submitter: Radboud University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Lutibacter sp. TH_r2

ncbi_submitter: Monash University


gtdb_type_species_of_genus: t

ncbi_organism_name: Nitrococcus mobilis Nb-231

ncbi_submitter: The Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_organism_name: uncultured Polyangiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Alberta

ncbi_isolation_source: dog bite on ear

ncbi_organism_name: Lysobacteraceae bacterium NML75-0749

ncbi_submitter: National Microbiology Laboratory/ Public Health Agency of Canada


ncbi_country: France: Paris

ncbi_isolation_source: periprosthetic tissue specimen

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_country: Pacific Ocean: Station ALOHA; 100 km north of Oahu; HI; USA

ncbi_isolation_source: base of a wide chlorophyll maximum feature; near the base of the euphotic zone

ncbi_organism_name: Prochlorococcus sp. P1344

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Denmark: Birkeroed; Next to farm near Hoersholm

ncbi_organism_name: Streptomyces sp. NBC_00183

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Prevotella sp.


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D8_bin-438

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Collierbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Collieribacteriota;x__unclassified Candidatus Collierbacteria;s__Candidatus Collierbacteria bacterium


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Yushu prefecture; Qinghai Province

ncbi_isolation_source: intestinal contents

ncbi_organism_name: Arthrobacter sp. zg.Y820

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Greece: Athens

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Unniversity of Queensland


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ireland

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Saccharopolyspora hirsuta

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Sanguibacteroides justesenii

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Escherichia coli KTE54

ncbi_submitter: Broad Institute


ncbi_country: France

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Malaysia: Terengganu

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Monash University


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Switzerland: Basel

ncbi_isolation_source: Cooling tower

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_organism_name: uncultured Solobacterium sp.


ncbi_isolation_source: Human intestine

ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Food Industry Research and Development Institute


ncbi_country: Romania: Movile Cave

ncbi_isolation_source: Upper gallery; floor level; 50-70 cm from the wall

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Faculty of Biology and Geology, Babes-Bolyai University of Cluj-Napoca


ncbi_country: USA: WI

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: CDC


ncbi_country: China

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hangzhou Medical University


ncbi_country: China: Jiangsu; Nanjing

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: Estonia

ncbi_isolation_source: ear secretion

ncbi_submitter: University of Tartu


ncbi_organism_name: Rhodococcus sp. IEGM1428

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. IEGM1428


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Candidatus Berkelbacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;x__unclassified Candidatus Berkelbacteria;s__Candidatus Berkelbacteria bacterium


ncbi_isolation_source: Ground Turkey

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


ncbi_organism_name: Jiangellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: infant feces

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Stenotrophomonas acidaminiphila


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Deltaproteobacteria bacterium


ncbi_country: USA: California; Eel River; Middle Fork Eel River downstream of confluence with Black Butte river

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Oscillatoriales cyanobacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_country: France: Corsica; Monte Renoso

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Polynucleobacter paneuropaeus

ncbi_submitter: University of Innsbruck


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Coproplasma;s__Candidatus Coproplasma excrementigallinarum


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 13ft depth

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;s__Candidatus Nealsonbacteria bacterium RBG_13_42_11


ncbi_assembly_name: Escherichia coli CVM N36210PS v1.0

ncbi_country: USA

ncbi_isolation_source: Farm

ncbi_strain_identifiers: CVM N36210PS

ncbi_submitter: FDA


ncbi_country: Czech Republic

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: fecal sample

ncbi_organism_name: Weissella cibaria

ncbi_submitter: University of Surrey


ncbi_country: USA: Atlanta; GA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Emory University


ncbi_organism_name: Actinosynnema sp. NPDC002837

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: feces

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: Papua New Guinea

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_strain_identifiers: ATCC BAA710

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo;x__Salmonella enterica subsp. enterica serovar Montevideo str. ATCC BAA710


ncbi_organism_name: Sphingopyxis sp.

ncbi_submitter: Sun Yat-sen University


ncbi_country: Saudi Arabia: Riyadh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University College Dublin


ncbi_country: China: Hunan; Huangshaping

ncbi_isolation_source: sediment

ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Brachybacter algidus

ncbi_submitter: Aalborg University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__environmental samples;s__uncultured Candidatus Altimarinota bacterium


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Chongqing Medical University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_isolate: Streptococcus mitis

ncbi_organism_name: Streptococcus mitis

ncbi_strain_identifiers: Streptococcus mitis

ncbi_submitter: UNIVERSITY COLLEGE LONDON


ncbi_submitter: University Hospital Duesseldorf


ncbi_isolation_source: clinical

ncbi_submitter: Food and Drug and Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Javiana


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Lutibacter flavus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Serratia sp. CY76391

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY76391


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Aminobacterium sp.

ncbi_submitter: University of Waterloo


ncbi_country: Brazil

ncbi_isolation_source: infected tree

ncbi_organism_name: Xylella fastidiosa subsp. pauca

ncbi_submitter: USDA


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Blood culture

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Cronobacter malonaticus 681

ncbi_submitter: LifeTech


ncbi_isolation_source: Environmental

ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Trueperaceae bacterium


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Enterobacter kobei


ncbi_country: Iran: Nikshahr; Sistan Baluchistan

ncbi_isolation_source: Mexican lime leaf

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: National Institute of Genetic Engineering and Biotechnology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_country: China: Guangdong

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Alaska

ncbi_isolation_source: tundra soil

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: University of Oklahoma


ncbi_country: USA: San Diego Bay; CA

ncbi_isolation_source: swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: India: Tamil Nadu; Chennai; Ashok Nagar

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sri Ramachandra Institute of Higher Education and Research


ncbi_country: Spain

ncbi_isolation_source: Skin Swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_organism_name: Streptomyces sp. NPDC049597

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Alaska; Fairbanks

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. TH10

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: China

ncbi_organism_name: Sinorhizobium fredii CCBAU 45436

ncbi_strain_identifiers: CCBAU 45436

ncbi_submitter: China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Sinorhizobium/Ensifer group;g__Sinorhizobium;x__Sinorhizobium fredii group;s__Sinorhizobium fredii;x__Sinorhizobium fredii CCBAU 45436


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: national health research institutes


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: NS

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Actimicrobium antarcticum

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Canada: Calgary

ncbi_isolation_source: Digital dermatitis lesion

ncbi_organism_name: Bacteroides pyogenes

ncbi_submitter: University of Calgary


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium AF96-09pH9TA

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Antecubital fossa swab

ncbi_organism_name: Lysinibacillus capsici

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: USA: Ohio

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: Portugal

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: ATCC


ncbi_organism_name: Simonsiella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: Australia: Magnetic Island; QLD

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Streptococcus sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Ruminiclostridium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus atrophaeus ATCC 9372-2

ncbi_submitter: Transformational Medical Technologies Program

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus atrophaeus;x__Bacillus atrophaeus ATCC 9372;x__Bacillus atrophaeus ATCC 9372-2


ncbi_country: Malaysia

ncbi_isolation_source: Gastric biopsy

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: University of Malaya


ncbi_organism_name: Bacteroides caecimuris


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: South Korea: Jeju-do; Seogwipo-si

ncbi_isolation_source: Flower of Prunus serrulata

ncbi_organism_name: Chryseobacterium sp. KACC 21268

ncbi_submitter: National Institute of Agricultural Sciences, Rural Development Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Weeksellaceae;x__Chryseobacterium group;g__Chryseobacterium;x__unclassified Chryseobacterium;s__Chryseobacterium sp. KACC 21268


ncbi_country: Somalia: Puntland

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_organism_name: Staphylococcus aureus M0946

ncbi_submitter: Broad Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Biochemistry and Biophysics of the Polish Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: INDIAN INSTITUTE OF SCIENCE


ncbi_organism_name: Lactococcus sp.


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Stenotrophomonas sp.


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_country: Germany: Heiligendamm

ncbi_isolation_source: seawater

ncbi_organism_name: Posidoniimonas polymericola

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Eye swab

ncbi_organism_name: Staphylococcus felis

ncbi_submitter: University of Bern


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Atopostipes sp.

ncbi_submitter: University of Minnesota


ncbi_organism_name: uncultured Coleofasciculus sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Institute of Antibiotics


ncbi_organism_name: Pseudomonas marginalis

ncbi_submitter: LMU Munich


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces sp. NPDC056373

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Bacteroides caccae


ncbi_organism_name: Adlercreutzia equolifaciens


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_organism_name: Stenotrophomonas muris

ncbi_submitter: Bielefeld University


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_country: France: Neuville; Lake Fargette

ncbi_isolation_source: size-fractionated lake water incubated for 31 months

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Saudi Arabia: Thuwal; RO plant located on Red Sea

ncbi_isolation_source: intake seawater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: King Abdullah University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Firmicutes bacterium UBA5301

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA5301


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: Synechococcus sp. R8-2

ncbi_submitter: University of Montana


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Aeromonas sp.


ncbi_isolation_source: ballast tank

ncbi_organism_name: Simkaniaceae bacterium

ncbi_submitter: Shandong university


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Germany: Cologne

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Cologne


ncbi_isolation_source: cold seep

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Peru: Lima

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: USA: WA

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Washington


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_strain_identifiers: LL-T

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus AGEN6010

ncbi_submitter: Broad Institute


ncbi_isolation_source: metal/plastic

ncbi_organism_name: Brucellaceae bacterium UBA7531


ncbi_organism_name: Catellatospora coxensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Faeces


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Japan

ncbi_isolation_source: nata-de-coco producing bacterial culture

ncbi_organism_name: Komagataeibacter sp. FNDCR1

ncbi_submitter: National Institute of Advanced Industrial Sciences and Technology


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Pseudomonas sp. 1

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Enterococcus raffinosus

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Canada: Toronto

ncbi_isolation_source: water

ncbi_organism_name: Dehalococcoides mccartyi

ncbi_submitter: University of Toronto


ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: USA: Damariscotta River in front of the Bigelow Laboratory for Ocean Sciences

ncbi_isolation_source: four week timepoint of microcosm treated with crude oil after inoculation with natural surface seawater; biological replicate 2

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: University of Georgia


ncbi_organism_name: Dialister sp.


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Public Health Ontario


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Birmingham


ncbi_country: China

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_organism_name: Mesorhizobium sp. M0410

ncbi_submitter: Washington State University


ncbi_country: Viet Nam

ncbi_isolation_source: hospital

ncbi_submitter: University of Antwerpen


ncbi_organism_name: Simonsiella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Malaysia

ncbi_isolation_source: Eye

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Enterococcus durans

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: China: Zhejiang

ncbi_isolation_source: farm environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcaceae bacterium UBA6392

ncbi_submitter: University of Queensland


ncbi_assembly_name: Rumen uncultured genome RUG815

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: WRAIR-Africa


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Sedimentibacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Sao Paulo


ncbi_country: USA

ncbi_isolation_source: NEUS_A leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Gallionella sp.

ncbi_submitter: University of Waterloo


ncbi_country: USA: North Carolina

ncbi_isolation_source: Piedmont

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Beijing Forestry University


ncbi_country: USA: IA

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis;x__Salmonella enterica subsp. enterica serovar Infantis str. CVM 22582


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Florida


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_strain_identifiers: GBJ

ncbi_submitter: heilongjiang Bayi agricultural university


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: KU Leuven


ncbi_organism_name: Frigoribacterium sp. PhB118

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Deforest; Wisconsin

ncbi_isolation_source: sink drain

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_organism_name: Achromobacter insuavis

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Clostridioides difficile CD47

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: Varibaculum cambriense

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Long Beach; CA

ncbi_isolation_source: Clinical patient

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Pittsburgh Bacteriophage Institute


ncbi_country: USA: Michigan

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: Russia: Saratov

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: RARI


ncbi_country: Ireland

ncbi_submitter: University of Galway


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus elgii

ncbi_submitter: KOREA RESEARCH INSTITUTE OF CHEMICAL TECHNOLOGY


ncbi_organism_name: Spirochaetales bacterium


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D7_bin-147

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: Duncaniella muris


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain

ncbi_isolation_source: Abbatoir

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: ISCIII


ncbi_organism_name: Gordonibacter sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: addis ababa university


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Muribaculum intestinale


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: United Kingdom

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 23050;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Neisseriaceae bacterium


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: Australia: near Lamington National Park; Queensland

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Universidad de Concepcion


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Czech Republic

ncbi_isolation_source: intestinal contents of pig

ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: KU Leuven


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_organism_name: uncultured Sutterellaceae bacterium


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-9191

ncbi_organism_name: uncultured Mucilaginibacter sp.

ncbi_submitter: BILS


ncbi_country: USA: VA

ncbi_isolation_source: sediment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: blood

ncbi_submitter: The National University of Malaysia (UKM)


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Aquiluna sp.

ncbi_submitter: Universidad Andres Bello


ncbi_assembly_name: freshwater MAG --- LJ-3-4m_bin-1031

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Urinary Tract

ncbi_organism_name: Staphylococcus sp. HMSC34B12

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: South Korea: Suwon-si

ncbi_isolation_source: skin

ncbi_organism_name: Cutibacterium acnes subsp. defendens

ncbi_submitter: CJ Bioscience


ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_isolation_source: Salty pickle wastewater

ncbi_organism_name: Pectinatus brassicae

ncbi_submitter: Genedata


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Candidatus Saccharimonas sp.

ncbi_submitter: EMG

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;x__environmental samples;s__uncultured Candidatus Saccharimonas sp.


ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Opitutus sp. GAS368

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Colorado

ncbi_isolation_source: fecal swab male ferret; 6.3 years old

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: Colorado State University


ncbi_country: Germany

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Zurich


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Turicibacter sanguinis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: host s whole body

ncbi_organism_name: Serratia symbiotica

ncbi_submitter: Centre de Biologie pour la Gestion des Populations (CBGP - UMR1062)


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Prevotella histicola


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: France

ncbi_isolation_source: bulk and rhizospheric soil

ncbi_organism_name: Pseudomonas lini

ncbi_submitter: Zentralinstitut fuer Ernaehrungs- und Lebensmittelforschung (ZIEL), WZW, TUM


ncbi_country: Portugal: Praia da Memoria

ncbi_isolation_source: marine sponge

ncbi_organism_name: Vibrio sp. OPT24

ncbi_submitter: Interdisciplinary Centre of Marine and Environmental Research


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Brachyspira sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Limosilactobacillus allomucosae

ncbi_strain_identifiers: WILCCON 0053

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Netherlands

ncbi_isolation_source: bioreactor under electrogenic and nitrate-reducing conditions

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Radboud University


ncbi_organism_name: Rubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Aggregatilineales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Candidatus Paralachnospira caecorum

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Paralachnospira;s__Candidatus Paralachnospira caecorum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Paralachnospira;s__Candidatus Paralachnospira caecorum


ncbi_country: South Korea

ncbi_isolation_source: Yellow Sea salt field

ncbi_organism_name: Lentibacillus salicampi

ncbi_strain_identifiers: ATCC BAA-719


ncbi_country: India: Bangalore Karnataka

ncbi_isolation_source: milk

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICAR-National Institute of Veterinary Epidemiology and Disease Informatics


ncbi_organism_name: Paraburkholderia sp. FT54

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_country: USA: Marcell Experimental Forest

ncbi_isolation_source: soil

ncbi_organism_name: Candidatus Binatus soli

ncbi_submitter: University of Queensland

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__Candidatus Binatus;s__Candidatus Binatus soli

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__Candidatus Binatus;s__Candidatus Binatus soli


ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Geogentics


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Stanford University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Chromatiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Massilia sp. Root418

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: USA: Looe Key National Marine Sanctuary; Florida

ncbi_isolation_source: coral mucus

ncbi_organism_name: Roseivirga sp. UBA6052


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Fibrobacter sp.

ncbi_submitter: EMG


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Parvimonas sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_submitter: Labbmm Biomol Group


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Chicago


ncbi_country: USA: ND

ncbi_submitter: NCTR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_isolation_source: Echo Valley

ncbi_organism_name: Janthinobacterium sp. BJB446

ncbi_submitter: GCAT-SEEK


ncbi_country: USA: California

ncbi_isolation_source: Owen s River

ncbi_organism_name: Cereibacter azotoformans

ncbi_strain_identifiers: ORIO

ncbi_submitter: University of California Santa Cruz


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolate: clinical

ncbi_isolation_source: clinical

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: clinical

ncbi_submitter: Faculty of Health Sciences


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: freshwater MAG --- Ki1-1-6m_bin-0129

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Brevibacillus ginsengisoli

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: Monash University


ncbi_organism_name: Salmonella sp. NW534

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: Candidatus Nanosyncoccus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;x__unclassified Candidatus Nanosyncoccus;s__Candidatus Nanosyncoccus sp.


ncbi_organism_name: Paraclostridium sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Children's Hospital of Fudan University


ncbi_organism_name: Wolbachia endosymbiont of Drosophila melanogaster

ncbi_strain_identifiers: wMel

ncbi_submitter: Indiana University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: Nimes University Hospital


ncbi_organism_name: Streptomyces griseoluteus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_submitter: Boston College


ncbi_organism_name: uncultured Phycisphaerales bacterium


ncbi_organism_name: uncultured Elusimicrobia bacterium


ncbi_organism_name: Candidatus Competibacter denitrificans

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__;f__Candidatus Competibacteraceae;g__Candidatus Competibacter;s__Candidatus Competibacter denitrificans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;g__Candidatus Competibacter;s__Candidatus Competibacter denitrificans


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: QuantHealth


ncbi_organism_name: Candidatus Brevefilum sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Anaerolineaceae;g__Candidatus Brevifilum;x__unclassified Candidatus Brevefilum;s__Candidatus Brevefilum sp.


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Thammasat university


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Antarctica: Western Antarctica; Lagoon Island

ncbi_isolate: LAG bin45

ncbi_isolation_source: soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_strain_identifiers: LAG bin45

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Mesobacillus jeotgali

ncbi_submitter: Guangdong Acegemy of Sciences


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Sorangium sp. So ce176

ncbi_strain_identifiers: So ce176

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce176


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The First Hospital of Lanzhou University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: Terada and Riya Laboratory, Chemical Engineering, Depertment of Technology, Tokyo University of Agriculture and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_organism_name: Rhizobium johnstonii

ncbi_submitter: The University of Sheffield


ncbi_isolate: AOP1_I1_surf _bin _21

ncbi_organism_name: Vagococcus sp.

ncbi_strain_identifiers: AOP1_I1_surf _bin _21

ncbi_submitter: Genoscope


ncbi_isolation_source: terrestrial

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Pingtan Island

ncbi_organism_name: Neotamlana laminarinivorans

ncbi_submitter: Shantou University


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_country: Russia: Polazna oil-extracting enterprise; Perm region

ncbi_isolation_source: oil-shale from settling pit

ncbi_organism_name: Rhodococcus qingshengii

ncbi_strain_identifiers: IEGM 708

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_country: China: Beijing

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Agrobacterium fabrum

ncbi_submitter: Academia Sinica


ncbi_country: Brazil: Brasilia

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Universidade Catolica de Brasilia


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Fusobacterium gastrosuis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Australia: Queensland; Stanthorpe

ncbi_isolation_source: leaves and stems

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum;sb__Candidatus Phytoplasma australasiaticum subsp. ipomoeae


ncbi_country: Brazil: Bahia

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: UNIVASF


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Lanzhou University Second Hospital


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tehran University of Medical Sciences


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Woeseiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F19490

ncbi_submitter: Broad Institute


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-before chlorination

ncbi_organism_name: Chlorobiaceae bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Aeromonas sp. PS2Canimalfood6

ncbi_submitter: South China Agricultural University


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: Switzerland

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus VRS8


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: vaginal

ncbi_organism_name: Staphylococcus sp. HMSC069E07

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_country: USA: Walter Reed Army Medical Center

ncbi_isolation_source: warwound (surv)

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Miami University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: China: Hainan

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolate: Fecal samples

ncbi_isolation_source: PAR

ncbi_strain_identifiers: Fecal samples


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: stool

ncbi_submitter: CDC


ncbi_organism_name: uncultured Microbacteriaceae bacterium

ncbi_submitter: European Institute of the Sea (IUEM) - France


ncbi_submitter: Microbiology, Fujita Health University School of Medicine


ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: unknown


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_country: China:Baisha county; Hainan province

ncbi_organism_name: Pelistega ratti

ncbi_submitter: Hainan Medical University-University


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_isolation_source: mud surface

ncbi_organism_name: Methylococcaceae bacterium NSM2-1

ncbi_submitter: The Ohio State University


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Paenibacillus xylanexedens

ncbi_submitter: BGI


ncbi_organism_name: Filifactor alocis

ncbi_submitter: EMG


ncbi_assembly_name: Campylobacter coli CVM 41986 v1.0

ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter coli CVM 41986

ncbi_submitter: FDA/CVM


ncbi_country: Australia: NSW; Port Stephens

ncbi_organism_name: Shewanella insulae

ncbi_submitter: NSW Department of Primary Industries


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Tissierella praeacuta


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: uncultured Fibrobacteraceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Institute for Advanced Biosciences, Keio University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Eubacterium] siraeum


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine environment

ncbi_organism_name: Synechococcus sp. WH 8101

ncbi_submitter: Station Biologique de Roscoff (CNRS - Sorbonne University)


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B;x__Salmonella enterica subsp. enterica serovar Java


ncbi_submitter: Paris Saclay University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Thailand: Chiang Mai

ncbi_isolation_source: food

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Portugal: Viana Castelo

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Antwerp


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: China: Zhejiang

ncbi_isolation_source: farm environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: USA

ncbi_submitter: Kansas State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Thalassospira sp. UBA848

ncbi_submitter: University of Queensland


ncbi_country: Malaysia

ncbi_isolation_source: pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: University of Chicago


ncbi_country: USA: offshore Texas

ncbi_isolation_source: filtered produced water from oil reservoir B6

ncbi_organism_name: Candidatus Petromonas tenebris

ncbi_submitter: University of Delaware


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: International Space Station internal surface

ncbi_organism_name: Pantoea piersonii

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology