ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Contig

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Estonia

ncbi_isolation_source: ear secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_isolation_source: human feces

ncbi_organism_name: Candidatus Colimorpha enterica

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Colimorpha;s__Candidatus Colimorpha enterica


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Irkutsk Plague Control Research Institute of Siberia and Far East


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: Faecalicoccus pleomorphus

ncbi_submitter: EMBL-EBI


ncbi_country: China: Zhejiang

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH12156

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Halomonas elongata

ncbi_submitter: Shandong Agricultural University


ncbi_assembly_level: Chromosome

ncbi_country: USA:New York;Manhattan

ncbi_isolation_source: Xenic protist cell culture

ncbi_organism_name: Hyphomonas atlantica

ncbi_refseq_category: reference genome

ncbi_submitter: American Museum of Natural History


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: bacterium

ncbi_submitter: University of Alberta


gtdb_representative: t

ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: China: Guangzhou City; Guangdong Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli


ncbi_assembly_level: Complete Genome

ncbi_submitter: Dutch CPE surveillance Study Group


ncbi_assembly_name: De novo assembly of single-cell genomes

ncbi_genome_category: derived from single cell

ncbi_isolation_source: raw seawater

ncbi_organism_name: Prochlorococcus sp. scB245a_518A17

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Italy

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: Netherlands

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: Nanjing agricultural university


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: Denmark

ncbi_isolation_source: phage resistant culture

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: University of Copenhagen


ncbi_country: China: South China Sea

ncbi_isolation_source: fluid

ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: China: Qinghai

ncbi_isolation_source: soil

ncbi_organism_name: Dyadobacter sp. CY345

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Germany: Brandenburg

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Justus-Liebig-University Giessen


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Oxalobacter paraformigenes

ncbi_strain_identifiers: HOxBLS

ncbi_submitter: Broad Institute

ncbi_type_material_designation: assembly from type material


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eisenbergiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus C427


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Peru

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Instituto Nacional de Salud


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Flavobacteriaceae bacterium UBA4430

ncbi_submitter: University of Queensland


ncbi_country: Morocco

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Lithuania: Vilnius

ncbi_organism_name: Clostridiales bacterium


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA: Durham; NH

ncbi_isolation_source: root nodules

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of New Hampshire

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Gemmatales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Blautia faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: coastal seawater

ncbi_organism_name: Aliiroseovarius sp. xm-d-517

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Mexico

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of California at Davis


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Blautia sp.

ncbi_submitter: AAFC


ncbi_organism_name: Streptomyces sp. HmicA12

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Peptacetobacter hiranonis

ncbi_submitter: UIUC


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: Oregon State University


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: Stool Specimen

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: icddr,b


ncbi_organism_name: Giesbergeria sp.


ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Germany: Karlsruhe

ncbi_isolation_source: Throat of a healthy human volunteer

ncbi_organism_name: Streptococcus rubneri

ncbi_submitter: TAILORED-Treatment project


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Staphylococcus capitis subsp. urealyticus

ncbi_submitter: Imperial College London


ncbi_isolation_source: human gut

ncbi_submitter: EBI


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica


ncbi_country: Ireland: Northern region of ROI

ncbi_isolation_source: fecal material

ncbi_submitter: UCD


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Poultry Farm

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: Antarctica

ncbi_isolation_source: sea water

ncbi_organism_name: Marinobacter maritimus

ncbi_submitter: Third Institute of State Oceanic Administration


ncbi_organism_name: Streptomyces cucumeris

ncbi_submitter: BGI Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 15m depth

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Candidatus Angelobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;g__Candidatus Angelobacter;x__unclassified Candidatus Angelobacter;s__Candidatus Angelobacter sp.


ncbi_organism_name: Vreelandella aquamarina

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Korea: Gwangju

ncbi_isolation_source: Subgingival dental plaque

ncbi_organism_name: Porphyromonas gingivalis

ncbi_strain_identifiers: KCOM 2798

ncbi_submitter: Korean Collection for Oral Microbiology


ncbi_country: New Zealand

ncbi_isolation_source: Post-mortem infection swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Massey University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Charles University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Chroococcidiopsis cubana SAG 39.79

ncbi_submitter: Freie Universitat Berlin


ncbi_organism_name: Candidatus Aldehydirespirator sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: IMG-taxon 2600255254 annotated assembly

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: West Virginia

ncbi_submitter: NCTR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_assembly_name: DSM 20682 assembly

ncbi_submitter: INRAE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus cecorum;x__Enterococcus cecorum DSM 20682 = ATCC 43198


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_country: Malaysia: Perlis

ncbi_isolation_source: paddy plant

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: MARDI


ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Streptosporangium fragile

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Helicobacter apodemus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Ares Genetics


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhizobium sp. Q54

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Leuconostoc citreum


ncbi_isolation_source: cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Japan:Mine Onsen

ncbi_organism_name: Thermus thermophilus

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_organism_name: Treponema sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Aeromonas sanarellii

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_organism_name: Enterobacter intestinihominis

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: uncultured Staphylococcaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Dyella halodurans

ncbi_submitter: SUN YAT-SEN UNIVERSITY


ncbi_organism_name: Marinobacter sp. GN3S48

ncbi_submitter: Inner Mongolia University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: uncultured Bacteriovoracaceae bacterium


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Specibacter sp. AOP5-B1-6

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_assembly_name: PAIRED

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MASINDE MULIRO UNIVERSITY OF SCIENCE AND TECHNOLOGY


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Streptomyces sp. NPDC058103

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Gobi Desert

ncbi_isolate: GDC bin35

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: GDC bin35

ncbi_submitter: Monash University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: Mexico

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_submitter: Loyola University Chicago


ncbi_country: Serbia: Novi Sad

ncbi_isolation_source: farm

ncbi_submitter: Institute for Molecular Genetics and Genetic Engineering

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces albidoflavus


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_submitter: MPIPZ


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: 4 days old; lung; liver and kidney sample

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: fermentation

ncbi_organism_name: Porphyromonadaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: Aeromonas dhakensis

ncbi_strain_identifiers: Isolate B

ncbi_submitter: University of Texas Medical Branch


ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bilophila sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Nitrospinaceae bacterium UBA3496


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: ATA BIO TEKNOLOJI ILAC SANAYI VE TICARET LTD. STI


gtdb_type_species_of_genus: t

ncbi_country: China: Xinjiang

ncbi_isolation_source: salt lake

ncbi_organism_name: Haloactinopolyspora alba

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: Caecum


ncbi_organism_name: uncultured Parasutterella sp.


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Helicobacter pylori GAM245Ai

ncbi_submitter: Washington University


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Turicibacter sp.


ncbi_country: Russia: Moscow

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Cyclobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: Mandibular osteomyelitis

ncbi_organism_name: Selenomonas sputigena

ncbi_strain_identifiers: KCOM 1787

ncbi_submitter: Korean Collection for Oral Microbiology


ncbi_country: South Korea

ncbi_isolation_source: forest soil

ncbi_organism_name: Paraburkholderia flava

ncbi_submitter: Kyonggi University, Suwon, South Korea


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; Southern Atlantic

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: nasopharynx


ncbi_organism_name: Peribacillus sp. FSL E2-0218

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Peribacillus;x__unclassified Peribacillus;s__Peribacillus sp. FSL E2-0218


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: milk

ncbi_organism_name: Paenibacillus odorifer

ncbi_submitter: Cornell University


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Integrative Pharmacogenomics Institute (iPROMISE)


ncbi_country: New Zealand: Palmerston North

ncbi_isolation_source: Soil below an organic waste pile

ncbi_organism_name: Raoultella terrigena

ncbi_submitter: Massey University


ncbi_organism_name: Escherichia coli

ncbi_submitter: UK Health Security Agency


ncbi_country: Japan: Isumi; Chiba prefecture

ncbi_isolation_source: bee hive

ncbi_organism_name: Frischella sp. Ac48

ncbi_submitter: AIST (National Institute of Advanced Industrial Science and Technology)


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Gachon University


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 223

ncbi_organism_name: Staphylococcus shinii

ncbi_strain_identifiers: SNUC 4611

ncbi_submitter: University of Calgary


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: EMG


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Canada: Manitou Rapids; ON

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Pseudomonas sp. BIGb0450

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Amycolatopsis panacis

ncbi_strain_identifiers: YIM PH21725

ncbi_submitter: Yunnan Institute of Microbiology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Nitriliruptoraceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D10_bin-0675

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Ascidian colleted from the South Sea

ncbi_organism_name: Ruegeria meonggei

ncbi_strain_identifiers: CECT 8411

ncbi_submitter: UVEG


ncbi_country: China: Guangdong

ncbi_isolation_source: kefir grains

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Xanthobacter sp. AM33

ncbi_submitter: University of East Anglia


ncbi_country: Antarctica: Near King Sejong Station

ncbi_isolation_source: Soil sample of penguin habitats

ncbi_organism_name: Kaistella antarctica


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Staphylococcus capitis

ncbi_strain_identifiers: MER TA 97

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: Czech Republic

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: 2nd Faculty of Medicine, Charles University and Motol University Hospital


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: United Kingdom Health Security Agency


ncbi_country: Slovenia: pig farm Ihan

ncbi_isolation_source: feces from large intestine

ncbi_organism_name: Prevotella sp. P5-64

ncbi_submitter: University of Ljubljana


ncbi_country: Ireland

ncbi_isolation_source: Poultry/Soil

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_organism_name: Gloeomargarita sp. GXS_bins_116

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Korea Polar Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium


ncbi_isolation_source: Hospital environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universite Laval


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 3201 hospital, Hanzhong


ncbi_country: China: Shanghai

ncbi_submitter: Shanghai East Hospital


ncbi_country: Australia

ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Menzies School of Health Research


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD9180

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lachnobacterium sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: Clemson University


ncbi_isolation_source: human gut

ncbi_organism_name: Megamonas funiformis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: Marine-sediment

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Institute of Applied Ecology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M1148

ncbi_submitter: Broad Institute


ncbi_organism_name: Brevundimonas sp. 3P02AD

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Klenkia sp.

ncbi_submitter: Colorado State University


ncbi_country: Hong Kong: Ngo Mei Chau

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Ruegeria arenilitoris

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: South Korea: Yongin-si; Gyeonggi-do

ncbi_isolation_source: water

ncbi_organism_name: Brevundimonas subvibrioides

ncbi_submitter: Kyung Hee University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Limnohabitans sp. Rim8

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Australia: Brisbane

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: The University of Queensland


ncbi_assembly_name: freshwater MAG --- Umea1_bin-3945

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Anaplasma phagocytophilum

ncbi_submitter: INRA-MIG


ncbi_country: Canada: Toronto

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_country: Brazil: Londrina

ncbi_isolation_source: leaves

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: North Carolina State University


ncbi_country: Italy: Emilia-Romagna; Parma

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bologna


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Complutense de Madrid


ncbi_country: Australia: Tasmania

ncbi_isolation_source: sputum from cystic fibrosis patient

ncbi_organism_name: Pandoraea fibrosis

ncbi_submitter: University of Malaya


ncbi_organism_name: Arthrobacter koreensis

ncbi_submitter: US Naval Research Laboratory


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: DTA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Lebanese American University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Psychrobacter sp.

ncbi_submitter: EMG


ncbi_country: USA: MD

ncbi_isolation_source: Baby Wipes

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Menzies School of Health Research


ncbi_country: USA:New Mexico; Soda Dam Hot Springs

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Blastochloris tepida

ncbi_strain_identifiers: GI

ncbi_submitter: National Institute of Genetics


ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Zhejiang University


ncbi_country: Denmark

ncbi_isolation_source: Environmental

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: Limnohabitans sp. Rim8

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China

ncbi_submitter: College of Life Science


ncbi_organism_name: Dokdonella sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Methylobacteriaceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: Italy

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Liege


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Sainte-Clotilde; Quebec

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Pseudomonas sp. B21-023

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: CAU


ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Instituto de Recursos Naturales y Agrobiologia de Sevilla. CSIC


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Danish Veterinary Consortium and AniCon


ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen


ncbi_submitter: Sapienza University of Rome


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: China: Beijing

ncbi_isolation_source: Bronchoalveolar lavage fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: China CDC


ncbi_country: USA: Massachusetts

ncbi_isolation_source: Massachusetts listeriosis outbreak

ncbi_organism_name: Listeria monocytogenes str. Scott A

ncbi_strain_identifiers: Scott A

ncbi_submitter: Institute of Food, Nutrition and Health, ETH Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes;x__Listeria monocytogenes str. Scott A


ncbi_assembly_name: freshwater MAG --- Ki3-D1_bin-1209

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Kauai Island

ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_strain_identifiers: KISC

ncbi_submitter: University of California Merced

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_organism_name: Luteolibacter sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Canada:Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Chthoniobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Cologne

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Chitinophagaceae bacterium


ncbi_country: France

ncbi_isolation_source: root

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: INRAE


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides ovatus


ncbi_assembly_name: VanTienen

ncbi_organism_name: Leptospira interrogans

ncbi_strain_identifiers: Van Tienen

ncbi_submitter: INDICASAT AIP


ncbi_country: Brazil: Presidente Prudente

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Anaerostipes sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: soil

ncbi_organism_name: Microvirga arabica

ncbi_submitter: Seoul Women's University


ncbi_country: Spain: Barcelona

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitari Vall d'Hebron


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_country: Pacific Ocean: South China Sea

ncbi_isolation_source: seawater at a depth of 700 m

ncbi_organism_name: Ketobacter sp.

ncbi_submitter: Shanghai Jiao Tong University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: feces

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_submitter: JCVI


ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Propionibacterium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Milk

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Chr. Hansen


ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Mexico: Tenancingo

ncbi_organism_name: Spiroplasma sp. hyd1

ncbi_submitter: Texas A&M University


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: environmental

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: addis ababa university


ncbi_assembly_name: freshwater MAG --- Erken-D8_bin-1031

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Flammeovirgaceae bacterium

ncbi_submitter: University of South Africa


ncbi_organism_name: Phocaeicola coprocola


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Methylocaldum sp. 0917

ncbi_submitter: C1iN Corporation


ncbi_organism_name: uncultured Ferruginibacter sp.


ncbi_organism_name: uncultured Terracidiphilus sp.


ncbi_organism_name: Salmonella sp. C3254

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Agriculture Faisalabad Pakistan


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: University of Stirling


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Eisenbergiella massiliensis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: General Hospital of Ningxia Medical University


ncbi_organism_name: Corynebacterium hansenii

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_assembly_name: Unknown Bacterium AM_2116

ncbi_organism_name: bacterium

ncbi_submitter: Universidade Federal de Sao Carlos - UFSCar


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: MI

ncbi_isolation_source: fully cooked product

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mesorhizobium sp. M1204

ncbi_submitter: Washington State University


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Qingdao Agricultural University


ncbi_organism_name: uncultured Chromatiales bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Tissierellia bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Russia: Severnaya Zemlya; Krasnoyarsk region

ncbi_isolation_source: bottom sediments

ncbi_organism_name: Rhodococcus sp. IEGM 1406

ncbi_strain_identifiers: IEGM 1406

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. IEGM 1406


ncbi_country: China: Yongping Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Italy: Florence

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_organism_name: Pseudomonas oryzihabitans


ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: USA:Columbia River; Washington; USA

ncbi_isolation_source: river sediment

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Chicago


ncbi_country: USA: Moab; Utah

ncbi_isolation_source: Biological Soil Crust

ncbi_organism_name: Bacillus sp. BSC154

ncbi_submitter: Arizona State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. BSC154


ncbi_organism_name: Sodaliphilus sp.


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Alteromonadaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_assembly_name: freshwater MAG --- Umea2p2_bin-0963

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: United Kingdom:Papworth

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Vagococcus jeotgali

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Monash University


ncbi_country: Belgium

ncbi_isolation_source: leaves

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Aarhus University


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Limosilactobacillus vaginalis

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_country: Turkey: Antalya

ncbi_isolation_source: Greenhouse

ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: University of Toronto Mississauga


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: metagenome

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Australia: Queensland

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Queensland


ncbi_country: USA: Pennsylvania; Pittsburgh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Yale University


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Canada: Toronto

ncbi_submitter: University of Toronto


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: endotracheal tube

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: North South University


ncbi_country: United Kingdom: London

ncbi_submitter: Imperial College London


ncbi_isolation_source: mucosal tissue from Crohns disease patient

ncbi_organism_name: Coprococcus sp.


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Wisconsin

ncbi_isolation_source: corn silage

ncbi_organism_name: Lacticaseibacillus casei 21/1

ncbi_submitter: University of Wisconsin-Madison, Utah State University


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Spribille Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: KU Leuven

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Shewanella indica

ncbi_submitter: South China Agriculture University


ncbi_organism_name: Actinomyces oris

ncbi_submitter: EMG


ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weslaco;x__Salmonella enterica subsp. enterica serovar Weslaco str. 247K


ncbi_country: Ireland: Dublin

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Maynooth University


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Synechococcus sp. MED650

ncbi_submitter: Tara Oceans Consortium


ncbi_country: France

ncbi_strain_identifiers: Verdun LP

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Icterohaemorrhagiae;x__Leptospira interrogans serovar Icterohaemorrhagiae str. Verdun LP


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Pig Farm

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: China

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_organism_name: Mesorhizobium sp. M0174

ncbi_submitter: Washington State University


ncbi_country: Netherlands: Leiden

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Leiden University


ncbi_organism_name: Clostridioides difficile T14

ncbi_submitter: LPBA


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: AGUASCALIENTES STATE LABORATORY LESP


ncbi_country: China: Hangzhou

ncbi_submitter: Zhejiang University


ncbi_country: Malaysia

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_country: Viet Nam

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Spirosoma sp.

ncbi_submitter: EPFL


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Rhizobium aethiopicum

ncbi_strain_identifiers: SEMIA 4074

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: USA

ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis NM422

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient20 sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: C_S_N bioreactor biomass

ncbi_organism_name: Pseudorhodoplanes sp.

ncbi_submitter: Radboud University Nijmegen


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Prevotellaceae bacterium UBA1633

ncbi_submitter: University of Queensland


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Pakistan

ncbi_isolation_source: throat

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: FDA


ncbi_organism_name: uncultured Christensenella sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: USA: MO

ncbi_isolation_source: organ

ncbi_submitter: University of Missouri

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Thermus thermophilus HB27

ncbi_submitter: Gottingen Genomics Laboratory


ncbi_assembly_name: Rumen uncultured genome RUG12380

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Lysinibacillus halotolerans

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_organism_name: Wujia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: feces (Sus domesticus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas tremae

ncbi_submitter: NIAB East Malling Research


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: USA: San Diego; Sunset Cliffs

ncbi_isolation_source: Yellow sponge

ncbi_organism_name: Pseudoalteromonas sp. MMG012

ncbi_submitter: San Diego State University


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: MEDICAL RESEARCH AND DEVELOPMENT ARGE  BIYOTEKNOLOJI SANAYI VE TICARET LTD STI


ncbi_country: China:Shandong; Shengli Oil field

ncbi_isolation_source: thermophilic; methanogenic hexadecane-degrading culture M82

ncbi_organism_name: Gudongella oleilytica

ncbi_submitter: Biogas Institute of Ministry of Agriculture


ncbi_organism_name: Streptosporangium sp. NPDC005286

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: EMG


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Central Italy

ncbi_isolation_source: respiratory secretions

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Siena


ncbi_isolation_source: Hospital

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_country: Chile

ncbi_isolation_source: urine

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Quaid-I-Azam University


ncbi_country: China: Hangzhou

ncbi_isolation_source: anal swab

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens


ncbi_isolation_source: not provided

ncbi_organism_name: Corynebacterium matruchotii


ncbi_country: China: Hong Kong

ncbi_isolation_source: biofilm full-scale rotating biological contactor (RBC)

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: South Korea: Seoul

ncbi_isolation_source: nasophraynx

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chungbuk National University Hospital


ncbi_country: China: Beijing

ncbi_organism_name: Paenibacillus physcomitrellae

ncbi_strain_identifiers: XB

ncbi_submitter: Capital Normal University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Canada: Manitoba;Winnipeg

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Actinomyces johnsonii


ncbi_assembly_name: freshwater MAG --- C-3_bin-125

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: China Agricultural University


ncbi_submitter: Quadram Institute Bioscience

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptomyces anthocyanicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Portugal: Faro

ncbi_isolation_source: Mango tissue

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: University of Malaga

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_country: China

ncbi_isolation_source: feces


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: Canada: British Columbia

ncbi_organism_name: Aeromonas salmonicida subsp. salmonicida

ncbi_submitter: Universite Laval


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater inflow

ncbi_submitter: BIOTEC


ncbi_country: China: Yangtze Estuary

ncbi_organism_name: Acuticoccus yangtzensis

ncbi_submitter: Shenzhen University


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: INRA


ncbi_country: China: Shenzhen

ncbi_organism_name: Clostridium sp. AM54-37XD

ncbi_submitter: BGI


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: Boston

ncbi_organism_name: Enterococcus mundtii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: [Eubacterium] infirmum

ncbi_submitter: European Bioinformatics Institute


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: China Agricultural University


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_country: Saudi Arabia: Riyadh

ncbi_submitter: University College Dublin


ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio vulnificus;x__Vibrio vulnificus NBRC 15645 = ATCC 27562


ncbi_country: Malaysia

ncbi_isolation_source: not known

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: freshwater MAG --- C-2_bin-254

ncbi_organism_name: uncultured Sphingomonadales bacterium

ncbi_submitter: BILS


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Sphingomonas taxi


ncbi_country: India: New Delhi

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: All India Institute of Medical Sciences


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: closed biodigester

ncbi_organism_name: Bacteroidales bacterium UBA1410

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1410


ncbi_country: United Kingdom: Liverpool

ncbi_isolation_source: Sputum

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: Xi'an Jiaotong-Liverpool University


ncbi_country: USA

ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: Australia: Perth

ncbi_isolation_source: pertoneal cavity

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Curtin University


ncbi_organism_name: Microvirga sp.

ncbi_submitter: Zhejiang University


ncbi_country: Ireland: Lough Hyne

ncbi_isolation_source: marine sponge

ncbi_organism_name: Pseudovibrio sp. Ad37

ncbi_submitter: University College Cork


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Pseudokineococcus sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Escherichia coli

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_organism_name: Morganella morganii

ncbi_submitter: NSU Genome Research Institute (NGRI)


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Hungatella sp.


ncbi_assembly_name: freshwater MAG --- E3_bin-068

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Geobacter sp.


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wuhan CDC


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni


ncbi_country: Japan

ncbi_isolation_source: gastric biopsies

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Dysgonomonas sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Chicago


ncbi_isolation_source: freshwater

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: USA: Conch Reef; Key Largo; Florida

ncbi_organism_name: Micrococcus sp. R8502A1

ncbi_submitter: Institute of Marine and Environmental Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_submitter: Saint-Petersburg Pasteur Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar London


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: sputum

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacteroides;s__Mycobacteroides abscessus;sb__Mycobacteroides abscessus subsp. bolletii;x__Mycobacteroides abscessus subsp. bolletii 103


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_organism_name: Photorhabdus luminescens

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: College of Basic Medical Science


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: Department of Biomedical Sciences, Faculty of Health and Medical Sciences, University of Copenhagen Novo Nordisk Foundation Center for Protein Research, Faculty of Health Sciences, University of Copenhagen Department of Clinical Biochemistry, Rigshospitalet, University of Copenhagen Department of Clinical Biochemistry, Bispebjerg & Frederiksberg Hospitals, University of Copenhagen


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate ramp bioreactor

ncbi_organism_name: Burkholderiales bacterium 66-26

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Missouri; St. Louis

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Mycobacterium avium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Limosilactobacillus portuensis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: SC


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Weissella viridescens


ncbi_organism_name: Staphylococcus equorum

ncbi_strain_identifiers: Sil NS 24

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: wheat roots

ncbi_organism_name: Pseudomonas sp. MIACH

ncbi_strain_identifiers: MIACH

ncbi_submitter: JLU


ncbi_country: China: Guan Tou; Lianjiang County and Fujian Province

ncbi_isolation_source: gut

ncbi_organism_name: Streptomyces sp. SS07

ncbi_submitter: Fujian Agriculture and Forestry university


ncbi_country: China: Guangdong

ncbi_isolation_source: duck

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: not known


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: subgingival dental plaque; periimplantitis

ncbi_organism_name: Fusobacterium animalis

ncbi_strain_identifiers: KCOM 1279

ncbi_submitter: Chosun University


ncbi_country: Germany: Kiel

ncbi_isolation_source: Rotting apple

ncbi_organism_name: Ochrobactrum sp. MYb68

ncbi_submitter: Zoological Institute, Kiel University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Microbacterium sp. UBA837

ncbi_submitter: University of Queensland


ncbi_country: Malaysia: Sabah

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Borneo Medical and Health Research Centre


ncbi_country: Czech Republic: Bzenec

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences


ncbi_organism_name: Campylobacter sp.

ncbi_submitter: AAFC


ncbi_assembly_name: PsittaciChina1.0 for CB7

ncbi_country: China: Hubei

ncbi_isolation_source: the spleens of the free-living vinous-throated Parrotbill

ncbi_organism_name: Chlamydia psittaci

ncbi_submitter: BGI


ncbi_country: India: Assam; Guwahati

ncbi_isolation_source: Teat swab

ncbi_organism_name: Mammaliicoccus sciuri


ncbi_country: Denmark: Viborg

ncbi_isolation_source: activated sludge from Vibo_18-Q3-R45-57

ncbi_organism_name: Propionivibrio sp.

ncbi_submitter: Aalborg University


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_assembly_name: Rumen uncultured genome RUG12371

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Netherlands: Oosterschelde estury; Lokkersnol

ncbi_organism_name: bacterium

ncbi_submitter: Uppsala University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Wyoming


ncbi_organism_name: Streptomyces fungicidicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Eshraghiella crossota


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Streptomyces virginiae


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: marine sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Shanghai Ocean university


ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centre for Infectious Disease Research in Zambia


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_organism_name: uncultured Gemmataceae bacterium


ncbi_organism_name: Butyricicoccus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Clostridia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Sanya

ncbi_isolation_source: coral

ncbi_organism_name: bacterium SCSIO 12827

ncbi_strain_identifiers: SCSIO 12827

ncbi_submitter: South China Sea Institute of Oceanology

ncbi_taxonomy_unfiltered: d__Bacteria;x__unclassified Bacteria;s__bacterium SCSIO 12827


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: China National Center for Food Safety Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Togo: Lome

ncbi_isolation_source: pus

ncbi_submitter: Universite de Lome


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: China

ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: USA

ncbi_isolation_source: Tissue GLENOID MEMBRANE

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_country: USA: Lake Washington

ncbi_organism_name: Flavobacterium sp. 2

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: United Kingdom: Taunton

ncbi_submitter: University of Maryland, Baltimore


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_isolation_source: shallow marine sediment [ENVO:03000034]

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Olavius algarvensis associated proteobacterium Delta 3


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Christensenella sp. UBA1685

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: IMG-taxon 2595698224 annotated assembly

ncbi_organism_name: Bosea thiooxidans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_isolate: AOP39_D1_surf _bin _12

ncbi_organism_name: Staphylococcus equorum

ncbi_strain_identifiers: AOP39_D1_surf _bin _12

ncbi_submitter: Genoscope


ncbi_country: USA: PA

ncbi_isolation_source: pleural cavity

ncbi_organism_name: Escherichia sp. MOD1-EC6100

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: SC


ncbi_country: Italy: Puglia

ncbi_organism_name: Clostridium botulinum B2 433

ncbi_submitter: Army Medical and Veterinary Research Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium botulinum;x__Clostridium botulinum B2 433


ncbi_country: Kenya: Talek

ncbi_isolation_source: termite gut

ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: surface water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan hospital


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: International Space Station

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: human stool

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Polyangiaceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_submitter: Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology


ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Neisseria sp. Marseille-Q5346

ncbi_submitter: IHU - Mediterranee Infection


ncbi_assembly_name: freshwater MAG --- Loclat_bin-05836

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Staskawiczbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Staskawicziibacteriota;x__unclassified Candidatus Staskawiczbacteria;s__Candidatus Staskawiczbacteria bacterium


ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Connecticut; Storrs

ncbi_isolation_source: crop

ncbi_organism_name: Clostridiaceae bacterium JG1575

ncbi_submitter: University of Connecticut


ncbi_organism_name: Saccharomonospora viridis

ncbi_submitter: University of British Columbia


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Capnocytophaga sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Streptomyces europaeiscabiei

ncbi_submitter: Oregon State University


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: Monash University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: University of Waterloo


ncbi_country: China: Henan

ncbi_isolation_source: liver

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Chinese Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: China: Guangdong

ncbi_isolation_source: stool

ncbi_submitter: Guangdong CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: India: Uttar Pradesh; Varanasi; Naipura Khurd

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: China: Sichuan

ncbi_isolation_source: sewage from chicken farm

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sichuan University


ncbi_country: Japan: Hyogo

ncbi_organism_name: Pseudomonas allii

ncbi_submitter: National Agriculture and Food Research Organization (NARO)


ncbi_country: Viet Nam: Tam Dao National Park

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China: Guizhou

ncbi_isolation_source: water

ncbi_organism_name: Solimonas sp. K1W22B-7

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University hospital Lubeck


ncbi_country: Arctic Ocean

ncbi_organism_name: Arcticibacterium luteifluviistationis

ncbi_submitter: Shandong University


ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Weissella paramesenteroides

ncbi_submitter: Brigham Young University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium GW2011_GWE2_42_25


ncbi_organism_name: Paraburkholderia heleia

ncbi_submitter: Guangxi University


ncbi_isolate: Fecal samples

ncbi_isolation_source: ALLERGYFLORA birth-cohort

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples

ncbi_submitter: UMR 1137 IAME


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Farm workers

ncbi_submitter: Curtin University


ncbi_isolation_source: terrestrial

ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: USA

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Pseudomonas marginalis pv. marginalis

ncbi_strain_identifiers: ICMP 3555

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas fluorescens group;s__Pseudomonas marginalis;x__Pseudomonas marginalis pv. marginalis


ncbi_organism_name: uncultured Nitrospira sp.

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum culture

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ares Genetics GmbH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Monash University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huzhou CDC


ncbi_submitter: Toho university


ncbi_submitter: Sichuan University


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 209

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 3885

ncbi_submitter: University of Calgary


ncbi_organism_name: Escherichia coli 90.0091

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Mobiluncus sp.

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: mBioClim


ncbi_submitter: DSM Nutritional Products Ltd

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis;x__Bacillus subtilis subsp. subtilis str. BSP1


ncbi_isolation_source: marine red alga Porphyra yezoensis

ncbi_organism_name: Polaribacter porphyrae

ncbi_submitter: Atmosphere and Ocean Research Institute, The University of Tokyo


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ISU 935

ncbi_submitter: USDA-ARS


ncbi_isolate: Reference

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_strain_identifiers: Reference

ncbi_submitter: dtu national food institute


ncbi_organism_name: Proteus sp. G4377

ncbi_submitter: nankai university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G4377


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus raffinosus

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: Pediatric Research and Clinical Center for Infectious Diseases


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: JCVI


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_assembly_name: freshwater MAG --- Loc090721-8-6m_bin-0435

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Belgium

ncbi_isolation_source: skin lesion

ncbi_submitter: Sciensano


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF COLORADO DENVER, SCHOOL OF MEDICINE


ncbi_country: Austria

ncbi_isolation_source: lung

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Institute of Microbiology


ncbi_submitter: National Institute of Infectious Diseases


ncbi_submitter: stanford university school of medicine


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Veillonella sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Lysobacter sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Filifactor sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: South Korea

ncbi_isolation_source: solar saltern

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Pontibacillus;s__Pontibacillus marinus;x__Pontibacillus marinus BH030004 = DSM 16465


ncbi_country: Ireland

ncbi_isolation_source: cheese

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University College Cork


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut

ncbi_organism_name: Alkalihalobacillus alcalophilus


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium