ncbi_country: China: Jiangsu

ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou university


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: United Kingdom

ncbi_genome_representation: full

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Tanzania: Moshi

ncbi_isolation_source: environmental

ncbi_submitter: Massey University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. salamae;x__Salmonella enterica subsp. salamae serovar 1,13,23:z29:e,n,x


gtdb_representative: t

ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_assembly_level: Complete Genome

ncbi_country: South Korea: Gwangju

ncbi_isolation_source: Subgingival dental plaque

ncbi_organism_name: Streptococcus periodonticum

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: KCOM 2412

ncbi_submitter: Korean Collection for Oral Microbiology

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Cutibacterium acnes C1

ncbi_submitter: Tokyo Medical and Dental University


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella aerogenes


ncbi_assembly_level: Scaffold

ncbi_organism_name: Salmonella sp. 2021_1357

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Tannerella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Japan

ncbi_isolation_source: brewery

ncbi_organism_name: Lactobacillus sp. ATCC 15578

ncbi_submitter: University of Saskatchewan


ncbi_country: Lithuania

ncbi_isolation_source: raw cow milk

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Lithuanian University of Health Sciences


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Aquabacterium sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__unclassified Aquabacterium;s__Aquabacterium sp.


ncbi_organism_name: Runella sp.

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: honeybee gut

ncbi_organism_name: Lactobacillus huangpiensis

ncbi_submitter: Northeast Agricultural University


ncbi_country: Switzerland

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Agroscope


ncbi_organism_name: uncultured Treponema sp.


ncbi_isolation_source: chard

ncbi_organism_name: Escherichia coli

ncbi_submitter: Wayne State University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IRCCS Fondazione Policlinico San Matteo


ncbi_country: China: Sichuan

ncbi_isolation_source: swine farm

ncbi_organism_name: Providencia vermicola

ncbi_submitter: sichuan university


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Enterobacter kobei


ncbi_organism_name: Streptomyces europaeiscabiei

ncbi_submitter: Oregon State University


ncbi_organism_name: Pseudomonas fuscovaginae ICMP 5940

ncbi_submitter: Charles Sturt University

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Canada: Manitoba

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: National Microbiology Laboratory


ncbi_isolation_source: gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospira sp. UBA2803


ncbi_country: China: Zhejiang

ncbi_isolation_source: Hematology Ward

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: the First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Candidatus Neomicrothrix sp. UBA2587

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp. UBA2587


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Germany

ncbi_isolation_source: milk powder

ncbi_organism_name: Anoxybacillus flavithermus

ncbi_submitter: Technical University Munich


ncbi_isolation_source: cystic fibrosis patient

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Germany: Leverkusen

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Cologne


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: China

ncbi_isolation_source: environmental swabs

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: China: Jiangsu Nanjing

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Omaha

ncbi_submitter: Creighton University


ncbi_isolation_source: lettuce

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_organism_name: Bdellovibrionaceae bacterium UBA3342


ncbi_country: USA:Delaware Bay; Delaware

ncbi_isolation_source: bay water summer N sample 29 PSU in less than .8 micron size fraction

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Rhodococcus jostii RHA1

ncbi_submitter: University of British Columbia


ncbi_country: Australia

ncbi_organism_name: Xanthomonas vasicola

ncbi_strain_identifiers: NCPPB 1241

ncbi_submitter: University of Exeter


ncbi_country: China: Beijing

ncbi_isolation_source: Sediment of karst cave frome Guilin

ncbi_organism_name: Hyphomicrobium sp. LHD-15

ncbi_submitter: College of life sciences


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Brazil

ncbi_isolation_source: urine

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Wietze

ncbi_isolation_source: oil-contaminated soil

ncbi_organism_name: Proteiniphilum sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Pseudomonas taetrolens

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: Escherichia coli


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Streptomyces sp. C184

ncbi_submitter: Burapha University


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Shewanella sp.

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


gtdb_type_species_of_genus: t

ncbi_country: Canada

ncbi_organism_name: Sporocytophaga myxococcoides DSM 11118

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Cytophagaceae;g__Sporocytophaga;s__Sporocytophaga myxococcoides;x__Sporocytophaga myxococcoides DSM 11118


ncbi_country: USA: Texas

ncbi_isolation_source: respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: LNCC


ncbi_country: Belgium: Wallonia

ncbi_isolation_source: feces

ncbi_submitter: University of Liege


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Silver Spring

ncbi_organism_name: Hoylesella buccalis

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: Seattle

ncbi_submitter: Broad Institute


ncbi_country: Laos

ncbi_isolation_source: River

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: University of Bern


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Denmark: Aalborg

ncbi_isolation_source: Biopsy

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Neoruminococcus faecicola

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Neoruminococcus;s__Candidatus Neoruminococcus faecicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Neoruminococcus;s__Candidatus Neoruminococcus faecicola


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_country: China: Yunnan

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD8415

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-347-J21

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: long-term freshwater anammox column reactor

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Environmental Preservation Engineering, Civil and Environmental Engineering, Hiroshima University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nottingham Trent University


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: ICDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Candidatus Limnocylindrus sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;x__unclassified Candidatus Limnocylindrus;s__Candidatus Limnocylindrus sp.


ncbi_organism_name: uncultured Rhodoluna sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;x__Luna cluster;x__Luna-1 subcluster;g__Rhodoluna;x__environmental samples;s__uncultured Rhodoluna sp.


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_submitter: University of Oxford


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_organism_name: Pseudomonas putida


ncbi_submitter: China Jiliang University


ncbi_organism_name: Candidatus Binataceae bacterium

ncbi_submitter: Monash University

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;x__unclassified Candidatus Binataceae;s__Candidatus Binataceae bacterium


ncbi_organism_name: Methylorubrum sp. POS3

ncbi_submitter: The University of Burdwan


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universita Politecnica delle Marche


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pseudarthrobacter scleromae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Ohtaekwangia sp.


ncbi_organism_name: Candidatus Makana argininalis

ncbi_submitter: University of California, Riverside

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;x__Enterobacterales incertae sedis;g__Candidatus Makana;s__Candidatus Makana argininalis


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Hominenteromicrobium sp.


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Salmonella sp. 741265136_HSA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_assembly_name: freshwater MAG --- Day2-2_bin-330

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Streptomyces lydicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SBM Research Institute of Rospotrebnadzor


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for Biotechnology, BTU Cottbus-Senftenberg


ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Oak Ridge

ncbi_isolation_source: single-cell amplified by MDA; oral cavity saliva/biofilm

ncbi_submitter: Oak Ridge National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Gracilibacteria bacterium GN02-872


ncbi_country: Finland

ncbi_organism_name: Dickeya solani

ncbi_submitter: Intercollegiate Faculty of Biotechnology of University of Gdansk and Medical University of Gdansk


ncbi_organism_name: Streptomyces sp. UNC401CLCol

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Canada: Calgary

ncbi_isolation_source: vaginal rectal swab from pregnant female

ncbi_organism_name: Streptococcus agalactiae GB00112

ncbi_submitter: MSU


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_submitter: Proteon Pharmaceuticals


ncbi_organism_name: Pseudofulvibacter geojedonensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: USA: North Carolina

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. gb14

ncbi_submitter: Cornell University


ncbi_isolation_source: marine water

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Ireland: Northern region of ROI

ncbi_isolation_source: fecal material

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_organism_name: Butyrivibrio sp. AE3006


ncbi_country: Brazil

ncbi_isolation_source: chicken piece (Gallus gallus)

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_submitter: JCVI


ncbi_organism_name: Pusillimonas sp. UBA2680

ncbi_submitter: University of Queensland


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 1.2 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: The University of Queensland


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacteria bacterium 4484_181


ncbi_organism_name: Comamonas sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Prevotella sp. UBA7115

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Japan: Niigata

ncbi_organism_name: Bradyrhizobium sp. UNPA324

ncbi_submitter: University of Minnesota


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_isolation_source: Sputum

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: SC


ncbi_organism_name: Streptococcus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Shenzhen

ncbi_isolation_source: environment

ncbi_organism_name: Vibrio sp. Vb0592

ncbi_submitter: City University of Hong Kong


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Ilyobacter polytropus

ncbi_submitter: Environmental Microbiology Lab


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_country: France

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: Nocardioides daejeonensis

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: Fodinicola feengrottensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Australia

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Pullibacteroides;s__Candidatus Pullibacteroides excrementavium


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Clostridium tetani

ncbi_submitter: CHU Arnaud de Villeneuve Montpellier


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of central Florida


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: addis ababa university


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; Guaymas Basin; Black smoker hydrothermal vent

ncbi_isolation_source: marine hydrothermal chimney wall TVG10

ncbi_organism_name: Hyphomicrobiales bacterium


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Colwellbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Colwelliibacteriota;x__unclassified Candidatus Colwellbacteria;s__Candidatus Colwellbacteria bacterium


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Germany

ncbi_isolation_source: single cell amplified by MDA

ncbi_organism_name: Escherichia coli

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: China

ncbi_isolation_source: Out-of-house environment

ncbi_organism_name: Klebsiella pasteurii

ncbi_submitter: South China Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_country: USA: Michigan

ncbi_isolation_source: Hospital hot water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_country: China: Weihai

ncbi_isolation_source: sediment from saltern

ncbi_organism_name: Rhodobacteraceae bacterium WFHF2C18

ncbi_submitter: Shandong University at Weihai


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium M2

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M2


ncbi_organism_name: Chlamydia trachomatis F/SW4

ncbi_submitter: Sanger Institute


ncbi_organism_name: Treponema sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Rhodobiaceae bacterium UBA3468

ncbi_submitter: University of Queensland


ncbi_organism_name: Hoylesella loescheii

ncbi_submitter: EMG


ncbi_country: Malaysia: Terengganu

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Monash University


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-130

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_strain_identifiers: new MAG-130

ncbi_submitter: Micoorganism


ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: blood culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Heidelberg University Hospital


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Flavobacterium lutivivi

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: air

ncbi_organism_name: Rathayibacter sp. Leaf248

ncbi_submitter: ETH ZURICH


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Aminobacterium colombiense

ncbi_submitter: University of Waterloo


ncbi_country: Sudan: Khartoum; Soba University Hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Brighton and Sussex Medical School


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: Universite Laval


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Kiritimatiellia bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_isolation_source: Caecum


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Biomin Research Center


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Gordonibacter sp.

ncbi_submitter: China Agricultural University


ncbi_country: Iraq

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium AM26-1LB

ncbi_submitter: BGI


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_organism_name: uncultured Spirochaeta sp.

ncbi_submitter: EMG


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_organism_name: Rickettsia sp. Tenjiku01

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;x__unclassified spotted fever group;s__Rickettsia sp. Tenjiku01


ncbi_country: South Korea

ncbi_isolation_source: activated sludge

ncbi_organism_name: Sulfurospirillum sp. hDNRA2

ncbi_submitter: KAIST


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Butyricicoccus sp. AM78-15b2TA

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Halioglobus sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Colombia: Medellin

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: national health research institutes


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: Germany: Berlin

ncbi_isolation_source: dead mute swan

ncbi_submitter: BfR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B


ncbi_organism_name: Rossellomorea yichunensis

ncbi_submitter: Yichun University


ncbi_organism_name: Octadecabacter sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Amphibacillus sp. Q70

ncbi_submitter: Sanming University


ncbi_isolation_source: human gut

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Marinobacter sp. KM021

ncbi_submitter: University of California, San Diego


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Stool

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Toho University


ncbi_country: France: Versailleux

ncbi_isolation_source: cattle manure

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: UMR5557, University of Lyon


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Comamonas sp. lk

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Jiangellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroides intestinalis


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: EMG


ncbi_country: India: Arunachal Pradesh

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: All India Institute Of Medical Science Bhopal


ncbi_organism_name: Shewanella algae

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Myxococcaceae bacterium


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Kenya

ncbi_organism_name: Ruminococcaceae bacterium UBA736

ncbi_submitter: University of Queensland


ncbi_country: Comoros

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bath


ncbi_country: China

ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_country: Brazil

ncbi_isolation_source: cloacal content

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_submitter: The University of Texas at Dallas


ncbi_country: Ireland

ncbi_organism_name: Elizabethkingia bruuniana

ncbi_submitter: CDC


ncbi_organism_name: Streptococcus ictaluri 707-05

ncbi_submitter: JCVI


ncbi_country: Poland: Lublin

ncbi_isolation_source: environmental

ncbi_organism_name: Apilactobacillus kunkeei

ncbi_submitter: University of Life Sciences in Lublin


ncbi_organism_name: Vibrio sp. 1159

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: The University of Queensland


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Pseudomonas taiwanensis

ncbi_submitter: ICAR - Indian Agricultural Research Institute


ncbi_organism_name: Caballeronia sp. LZ003

ncbi_submitter: University of Texas at Arlington


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Malaysia: Sabah

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Biotechnology Research Institute


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 221

ncbi_organism_name: Staphylococcus shinii

ncbi_strain_identifiers: SNUC 4555

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: brain

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China University of Technology


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Sideroxydans lithotrophicus

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: Russia: Lake Tambukan

ncbi_isolation_source: drainless (salt) lake

ncbi_organism_name: Streptomyces albus

ncbi_submitter: Tyumen State University


ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Laval university


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces sp. NPDC057963

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Georgia; Sapelo Island

ncbi_isolation_source: surface seawater inoculated into a synthetic phycosphere

ncbi_organism_name: Ruegeria pomeroyi

ncbi_submitter: University of Georgia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces sp. NPDC087864


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: Industrial ABE fermentation

ncbi_organism_name: Clostridium saccharobutylicum

ncbi_submitter: LanzaTech Inc


ncbi_country: Malawi

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolate: Clinical

ncbi_isolation_source: Cough swab

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Clinical

ncbi_submitter: newcastle university


ncbi_country: USA: New York

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Klebsiella sp. CB_Kp191

ncbi_submitter: Max Rubner-Institut


ncbi_country: USA: Texas

ncbi_organism_name: Chryseobacterium camelliae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Boston; MA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus M0449

ncbi_submitter: Broad Institute


ncbi_organism_name: Stenotrophomonas sp. ATs4

ncbi_submitter: Universidad Antonio Narino


ncbi_assembly_name: freshwater MAG --- MJ-2014-D2_bin-0549

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Nigeria

ncbi_organism_name: Escherichia coli

ncbi_submitter: Cepheid


ncbi_country: China: the East China Sea

ncbi_isolation_source: enrichment culture inoculated with surface estuarine sediment

ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Shanghai Jiao Tong University (SJTU)


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Exilispira sp.

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Glaciecola sp. 33A

ncbi_submitter: University of Alaska Fairbanks


ncbi_organism_name: uncultured Sphingobium sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Actinomyces gerencseriae


ncbi_isolation_source: feces dairy cow (Bos taurus)

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Cerro;x__Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001674


ncbi_country: Russia:Rostov Region

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Treponema sp.

ncbi_submitter: INRA


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nigde Omer Halisdemir University


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Streptomyces sp. NPDC048425

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Linnaeus University


ncbi_organism_name: Streptomyces collinus


ncbi_submitter: Chinese center for disease control and prevention


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Arenimonas sp.

ncbi_submitter: Monash University


ncbi_organism_name: Chlamydia psittaci

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese CDC


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Pseudomonadota bacterium


ncbi_country: China: Hunan; Shuikoushan

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D6_bin-640

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Beltsville; Maryland

ncbi_isolation_source: bog

ncbi_organism_name: Chromobacterium vaccinii

ncbi_submitter: USDA-ARS


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: mouse gut metagenome


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: Eugene

ncbi_isolation_source: indoor dust from athletic faciility office

ncbi_organism_name: Pseudomonas japonica

ncbi_submitter: Northwestern University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Portnoyibacteriota;s__Candidatus Portnoybacteria bacterium CG09_land_8_20_14_0_10_44_13


ncbi_country: China

ncbi_isolation_source: intestine

ncbi_organism_name: Acinetobacter towneri

ncbi_submitter: City University of Hong Kong


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Colwelliibacteriota;s__Candidatus Colwellbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_42_22


ncbi_country: USA: DC

ncbi_isolation_source: human

ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: SCOPE

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_isolation_source: isolated from diarrheal patient

ncbi_organism_name: Escherichia albertii

ncbi_submitter: University of Miyazaki


ncbi_country: Australia: Queensland

ncbi_isolation_source: bile

ncbi_organism_name: Campylobacter bilis

ncbi_submitter: RMIT University


ncbi_country: Turkey: Armutlu; Yalova

ncbi_isolation_source: hot spring water

ncbi_organism_name: Geobacillus thermoleovorans

ncbi_submitter: Istanbul Technical University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_country: Ghana

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Spain: Palma de Mallorca

ncbi_isolation_source: waste water

ncbi_organism_name: Stutzerimonas frequens

ncbi_submitter: University of Balearic Islands


ncbi_organism_name: Gordonia soli NBRC 108243

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;s__Gordonia soli;x__Gordonia soli NBRC 108243


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bacillus sonorensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Cronobacter universalis

ncbi_submitter: Centers for Disease Control and Prevention Enteric Diseases Laboratory Branch


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Ontario

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Public Health Ontario laborato


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: USA

ncbi_isolation_source: human clinical case

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Actinobacillus sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Lebanese American University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_country: Argentina

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_country: Netherlands: Leiden

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Leiden University


ncbi_country: USA: Louisiana

ncbi_isolation_source: sugarcane factory

ncbi_organism_name: Leuconostoc lactis

ncbi_submitter: USDA-ARS


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Brucella pinnipedialis M292/94/1

ncbi_submitter: Broad Institute


ncbi_country: South Korea: Namhae

ncbi_isolation_source: Potato bacterial wilt

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: National Institute of Agricultural Sciences, RDA


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: icddr,b


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: USA: MD

ncbi_organism_name: Shigella dysenteriae

ncbi_strain_identifiers: DMB SH20028

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Oceanospirillaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: human skin

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: NHGRI/NIH


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada: Waterloo

ncbi_isolation_source: water from a groundwater well adjacent to an active municipal landfill in Southern Ontario

ncbi_organism_name: Nevskia sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Stutzerimonas balearica

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: University of Chicago


ncbi_country: Germany

ncbi_isolation_source: lung

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: RNA Bioinformatics and High-Throughput Analysis Friedrich Schiller University Jena


ncbi_organism_name: Rickettsia amblyommatis str. GAT-30V

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia amblyommatis;x__Rickettsia amblyommatis str. GAT-30V


ncbi_country: Egypt: Mansoura

ncbi_isolation_source: Urinary catheter

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Nottingham Trent University


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Acetobacter fabarum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Manitoba


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: WA

ncbi_isolation_source: blood

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: Genoscope CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_country: Atlantic Ocean: South Georgia (Cumberland Bay)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Desulfatiglandales bacterium

ncbi_submitter: University of Bremen


ncbi_organism_name: Candidatus Portnoybacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Portnoyibacteriota;x__unclassified Candidatus Portnoybacteria;s__Candidatus Portnoybacteria bacterium


ncbi_country: Nigeria

ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_country: France

ncbi_organism_name: Erwinia amylovora

ncbi_strain_identifiers: CFBP 1995

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Sneathiella sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: cold seep

ncbi_organism_name: Lentisphaerales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Mucispirillum sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Schaedlerella sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Bacteroides sp. 1_1_30

ncbi_submitter: Broad Institute


ncbi_organism_name: Bermanella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_assembly_level: Chromosome

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wadsworth Center, New York State Department of Health


ncbi_assembly_name: Rumen uncultured genome RUG386

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Japan: Hokkaido

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: China: Sichuan

ncbi_organism_name: Apibacter sp. B3546

ncbi_submitter: China Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG10940

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Cetobacterium sp.


ncbi_organism_name: Meiothermus cerbereus

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: Rumen uncultured genome RUG412

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobia subdivision 6 bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Verrucomicrobiales;f__Verrucomicrobia subdivision 6;x__unclassified Verrucomicrobia subdivision 6;s__Verrucomicrobia subdivision 6 bacterium


ncbi_organism_name: Actinopolymorpha sp. B11F2

ncbi_submitter: Ondokuz Mayis university


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFCSPHIGHO2_12_FULL_44_22b


ncbi_country: Canada: British Columbia

ncbi_isolation_source: ANIMAL-chicken

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120685


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Shandong First Medical University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Poland

ncbi_organism_name: Providencia sp. wls1916

ncbi_submitter: NanKai universit


ncbi_organism_name: Edaphobacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Chthonomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_assembly_name: Rumen uncultured genome RUG14823

ncbi_organism_name: uncultured Spirochaetaceae bacterium


ncbi_organism_name: Terriglobales bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: microbial mat

ncbi_organism_name: Synechococcales cyanobacterium PMM_0083

ncbi_submitter: University of Liege


ncbi_country: Denmark

ncbi_organism_name: Leptospira sp. B5-022

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Thailand: Khonkaen

ncbi_isolation_source: meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Public Health


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_submitter: URMC


ncbi_organism_name: Escherichia coli ATCC BAA-2215

ncbi_strain_identifiers: ATCC BAA-2215

ncbi_submitter: American Type Culture Collection


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Haemophilus sp.


ncbi_organism_name: Helicobacter apodemus


ncbi_organism_name: Maribacter sp. Hel_I_7

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Branchiibius cervicis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Japan

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Agrobacterium tumefaciens


ncbi_isolation_source: terrestrial

ncbi_organism_name: Thermodesulfobacterium commune

ncbi_submitter: University of Queensland


ncbi_country: Australia: Queensland

ncbi_isolation_source: laboratory culture after 20 days induced resistance against Colistin

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Queensland


ncbi_strain_identifiers: isolateI

ncbi_submitter: Public Health Agency of Canada


ncbi_country: South Korea

ncbi_isolation_source: Hospital

ncbi_submitter: Korea National Institute of Health, Korea Centers for Disease Control & Prevention


ncbi_country: Romania: Bucharest

ncbi_isolation_source: Enviromental

ncbi_submitter: National Institute for Infectious Diseases "Matei Bals


ncbi_country: Australia: Melbourne

ncbi_isolation_source: cough swab

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Monash University


ncbi_country: USA: Trunk River; Woods Hole; MA

ncbi_isolation_source: Estuary

ncbi_organism_name: Rhodovulum sulfidophilum

ncbi_submitter: Washington University in St Louis


ncbi_organism_name: Paraprevotella clara

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-081

ncbi_submitter: Broad Institute


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_country: Kenya: Laikipia

ncbi_isolation_source: Camel

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Pakistan: Faisalabad

ncbi_isolation_source: blood

ncbi_submitter: National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Wenzhouxiangellaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Swine farm dust

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: istituto zooprofilattico sperimentale della lombardia e dell'emilia romagna-i.z.s.l.e.r.


ncbi_organism_name: Brucella abortus NCTC 8038

ncbi_strain_identifiers: NCTC 8038

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella abortus;x__Brucella abortus NCTC 8038


ncbi_country: New Zealand

ncbi_organism_name: Campylobacter peloridis

ncbi_submitter: Massey University


ncbi_country: China: Xiaochaidan Lake

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Sphingobacteriia bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Fibrobacter sp.


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Phycisphaerales bacterium UBA1668

ncbi_submitter: University of Queensland


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P64P

ncbi_submitter: South China Agricultural University


ncbi_country: Germany

ncbi_isolation_source: milk powder

ncbi_organism_name: Anoxybacillus flavithermus

ncbi_submitter: Technical University Munich


ncbi_country: Malaysia

ncbi_isolation_source: waterfall

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: University of Malaya


ncbi_country: Sweden: Stockholm

ncbi_organism_name: Enterococcus faecium VRE0576

ncbi_submitter: Swedish Institue for Communicable Disease Control


ncbi_country: China: Wenzhou

ncbi_isolation_source: Drainage fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: wenzhou medical university


ncbi_country: Russia: Orenburg

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for Cellular and Intracellular Symbiosis


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured Methylobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: North Carolina

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Gusto Global LLC


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Biomedicine Discovery Institute


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Southwest University


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: China

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 5-63 micron fraction

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Achromobacter mucicolens


ncbi_organism_name: Flammeovirgaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: South Korea

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: National Institute of Crop Science


ncbi_country: France: River Dordogne

ncbi_organism_name: Chryseobacterium balustinum

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_organism_name: Dysosmobacter sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: Blautia sp. An81

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Streptomyces sp. NPDC096012

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Proteus sp. G2666

ncbi_submitter: nankai university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G2666


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor silvarum


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Romboutsia hominis


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Respiratory swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: Hong Kong

ncbi_isolation_source: Biopsy

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Queensland


ncbi_isolation_source: marine

ncbi_organism_name: Vibrio sp. qd031

ncbi_submitter: ocean university of china


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Segatella copri

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Rhodophyticola porphyridii

ncbi_submitter: University of Maryland Center for Environmental Science


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Desulfovibrio sp. SGI.169

ncbi_submitter: University of Manitoba


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. SCPE 10

ncbi_strain_identifiers: SCPE 10

ncbi_submitter: UFRJ - Rio de Janeiro Federal University


ncbi_organism_name: Caulobacterales bacterium

ncbi_submitter: Iowa State University


ncbi_organism_name: Salmonella sp. NW846

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Candidatus Pelethenecus sp.

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__Mollicutes incertae sedis;g__Candidatus Pelethenecus;x__environmental samples;s__uncultured Candidatus Pelethenecus sp.


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Gardnerella sp. DNF00038

ncbi_submitter: Fred Hutch


ncbi_organism_name: Morganella morganii

ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Variovorax sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_organism_name: uncultured Syntrophales bacterium


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_organism_name: uncultured Halomonas sp.

ncbi_submitter: EMG


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Synergistales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: Center for Microbial Communities


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Candidatus Roizmanbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;x__unclassified Candidatus Roizmanbacteria;s__Candidatus Roizmanbacteria bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA

ncbi_isolation_source: NEUS_A leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Tanzania: Kigoma

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Australia

ncbi_isolation_source: Sparkling wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Science and Technology of China


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Seawater

ncbi_submitter: marine college, shandong university


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Chile

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: INRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: USA: California

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, College Park


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Canada: Sherbrooke

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Bisgaardia hudsonensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_country: China: Nanjing

ncbi_isolation_source: soil

ncbi_organism_name: Acinetobacter sp. AG3

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Antarctica: deglaciated northern part of James Ross Island

ncbi_isolation_source: regolith

ncbi_organism_name: Hymenobacter amundsenii

ncbi_submitter: Masaryk University


ncbi_country: France: Lille

ncbi_isolation_source: trachea


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shanghai

ncbi_isolation_source: bronchoalveolar lavage fluid

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Monash Unversity


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_assembly_name: Aquimarina sp. strain Aq78

ncbi_isolate: Aquimarina sp. strain Aq78 assembly 01

ncbi_isolation_source: Marine sponge

ncbi_organism_name: Aquimarina sp. Aq78

ncbi_strain_identifiers: Aquimarina sp. strain Aq78 assembly 01

ncbi_submitter: iBB-IST


ncbi_country: Brazil: Eastern Amazon

ncbi_isolation_source: forest soil

ncbi_organism_name: Nocardioides kongjuensis

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Syntrophorhabdaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Corynebacteriaceae bacterium UBA2307

ncbi_submitter: University of Queensland


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Streptomyces sp. NPDC088270

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacillus pumilus

ncbi_strain_identifiers: ATCC 7061

ncbi_submitter: American Type Culture Collection (ATCC)


ncbi_country: Canada: Lethbridge

ncbi_isolation_source: mini-bioreactor of chicken cecal community

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Ningxia; Yinchuan

ncbi_isolation_source: Skin/soft tissue

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_isolation_source: gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Gennova Biopharmaceuticals Ltd


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Prevotella pectinovora

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of Antibiotics


ncbi_organism_name: Alicycliphilus denitrificans

ncbi_submitter: China Three Gorges University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Norway

ncbi_organism_name: Francisella noatunensis

ncbi_submitter: Northern Arizona University


ncbi_assembly_name: Rumen uncultured genome RUG11492

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Caproicibacter sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Zimbabwe

ncbi_isolation_source: Mahewu

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: University of Alberta


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_isolation_source: lake water

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Ohio

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Vibrio sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Armatimonas sp.

ncbi_submitter: EPFL


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Salmonella sp. NW962

ncbi_submitter: Sichuan University


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: cold seep

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Portugal: Matosinhos

ncbi_isolation_source: sediments

ncbi_organism_name: Microbacterium memoriense

ncbi_submitter: Faculty of Sciences University of Porto


ncbi_organism_name: Synechococcus sp. RS9916

ncbi_submitter: The Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade de Tras-os-Montes e Alto Douro


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain: Seville

ncbi_isolation_source: Balb/C mouse gall bladder

ncbi_submitter: Universidad de Sevilla

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: Portland State University


ncbi_country: USA: Chaska; MN

ncbi_isolation_source: cucumber fermentation brine

ncbi_organism_name: Weissella cibaria

ncbi_submitter: USDA-ARS


ncbi_country: USA: New York City

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Columbia University Medical Center


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: France: Besancon

ncbi_isolation_source: Bone biopsy

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_organism_name: Candidatus Hydrogenedentales bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea

ncbi_taxonomy: d__Bacteria;p__Candidatus Hydrogenedentota;c__Candidatus Hydrogenedentia;o__Candidatus Hydrogenedentales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;c__Candidatus Hydrogenedentia;o__Candidatus Hydrogenedentales;x__unclassified Candidatus Hydrogenedentales;s__Candidatus Hydrogenedentales bacterium


ncbi_country: USA: Minnesota

ncbi_isolation_source: Rectal swab

ncbi_submitter: University of Minnesota


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia territorii

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Shandong University


ncbi_country: India: Vellore

ncbi_isolation_source: blood from patient with blood stream infection

ncbi_submitter: Christian Medical College


ncbi_organism_name: Labilibaculum sp.

ncbi_submitter: Stockholm University


ncbi_isolation_source: Caecum


ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella grimontii

ncbi_strain_identifiers: P079F P

ncbi_submitter: Imperial College London


ncbi_organism_name: Desulfuromonas acetoxidans

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Thermoanaerobaculia bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Egypt: Lake El Hamra

ncbi_isolation_source: shoreline sediment

ncbi_organism_name: Heliorestis acidaminivorans

ncbi_submitter: Bellevue University


ncbi_assembly_name: freshwater MAG --- Ki2-D3_bin-0622

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: BILS


ncbi_country: United Kingdom:Sheffield

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sheffield


ncbi_country: USA: Washington; Pullman; Washington State University Compost Facility

ncbi_organism_name: Geobacillus sp. WSUCF-018B

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Didemnitutus sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;f__Opitutaceae;g__Candidatus Didemnitutus;x__unclassified Candidatus Didemnitutus;s__Candidatus Didemnitutus sp.


ncbi_country: Germany: Augsburg

ncbi_isolation_source: Skin swab

ncbi_submitter: Helmholtz Center Munich


ncbi_country: France

ncbi_isolation_source: stools

ncbi_organism_name: Campylobacter coli

ncbi_submitter: CHU de Bordeaux


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: blood

ncbi_strain_identifiers: ICE 219

ncbi_submitter: University of Texas Health Science Center - Houston


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Japan

ncbi_organism_name: Escherichia coli O121

ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: University of Calgary


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;x__unclassified Spiroplasma;s__Spiroplasma endosymbiont of Panzeria rudis


ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Guangdong; Daobaoshan

ncbi_organism_name: Chthonomonadaceae bacterium


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: USA

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_country: Taiwan

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: National Chung Hsing University


ncbi_organism_name: Nocardia niigatensis NBRC 100131

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: Sputum sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Rouen University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


ncbi_country: Brazil

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute of Infectious Diseases


ncbi_isolation_source: fruit of montain soursop

ncbi_organism_name: Acetobacter cibinongensis


ncbi_isolation_source: BLOOD


ncbi_country: Norway: Baerum

ncbi_isolation_source: Wastewater pump station

ncbi_submitter: Karolinska Institutet


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Ruminococcaceae bacterium UBA4925

ncbi_submitter: University of Queensland


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_country: USA: New York

ncbi_isolation_source: respiratory

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China

ncbi_isolation_source: fresh feces

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Universidad Andres Bello


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Alistipes sp.

ncbi_submitter: AAFC


ncbi_country: Portugal

ncbi_isolation_source: Vaginal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_organism_name: Streptomyces bottropensis ATCC 25435

ncbi_submitter: Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: caecum

ncbi_organism_name: Anaeromassilibacillus sp. An250

ncbi_submitter: Veterinary Research Institute


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Saudi Arabia: central Red Sea

ncbi_isolation_source: Surface water sample from the central Red Sea

ncbi_organism_name: Prochlorococcus sp. RS01

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_country: New Zealand: Waimauku

ncbi_organism_name: Pseudomonas savastanoi pv. glycinea

ncbi_strain_identifiers: ICMP 4180

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. glycinea


ncbi_country: Malawi: Blantyre

ncbi_isolation_source: sludge

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Yale School of Public Health


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics