ncbi_organism_name: Micrococcus luteus

ncbi_strain_identifiers: ATCC 4698

ncbi_submitter: Zhejiang Tianke High Technology Development Co.Ltd.


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_assembly_name: freshwater MAG --- Loclat_bin-13283

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylibium sp.

ncbi_submitter: BILS


ncbi_country: South Korea: east sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Frigidibacter sp. ROC022

ncbi_submitter: REDONE Technologies


gtdb_representative: f

ncbi_assembly_level: Scaffold

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG13252

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sun-yat Sen University


ncbi_assembly_level: Chromosome

ncbi_country: Japan: Suruga Bay

ncbi_isolation_source: fish

ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_isolate: metabat2_XCR1_HET_6741_bwa.145 MAG

ncbi_organism_name: Candidatus Fimimorpha faecalis

ncbi_strain_identifiers: metabat2_XCR1_HET_6741_bwa.145 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Eubacteriales;f__;g__Candidatus Fimimorpha;s__Candidatus Fimimorpha faecalis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Fimimorpha;s__Candidatus Fimimorpha faecalis


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: Auburn University


ncbi_isolation_source: human skin metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_assembly_name: freshwater MAG --- Loclat_bin-06596


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis KT-0091

ncbi_submitter: Broad Institute


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: Klebsiella quasipneumoniae


ncbi_organism_name: Melaminivora sp.


ncbi_organism_name: Acutalibacter sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Pectobacterium carotovorum

ncbi_submitter: Cornell University


ncbi_assembly_level: Complete Genome

ncbi_country: South Korea: Gimcheon

ncbi_isolation_source: tissue

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_organism_name: Paraburkholderia fungorum

ncbi_strain_identifiers: SEMIA 4007

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Daejeonella sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Brazil

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_country: Canada: Guelph

ncbi_isolation_source: soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_country: Peru: Lima

ncbi_isolation_source: livestock

ncbi_submitter: Universidad Andres Bello


ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Methylobacter sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Brucella abortus bv. 4 str. 292

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella abortus;x__Brucella abortus bv. 4;x__Brucella abortus bv. 4 str. 292


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Stenotrophomonas rhizophila

ncbi_submitter: EMG


ncbi_country: Israel

ncbi_organism_name: Bdellovibrio bacteriovorus

ncbi_submitter: Hebrew University of Jerusalem


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Dysgonomonas sp.


ncbi_organism_name: Gallintestinimicrobium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Lebanon

ncbi_strain_identifiers: VRE 37

ncbi_submitter: Lebanese American University


ncbi_organism_name: Klebsiella sp. GG_Kp151

ncbi_submitter: Max Rubner-Institut


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_assembly_name: Rumen uncultured genome RUG12294

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Loyola University Chicago


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: India: Lonar Lake

ncbi_isolation_source: lake sediment

ncbi_organism_name: Halalkalibacter alkaliphilus

ncbi_refseq_category: reference genome

ncbi_submitter: National Centre For Cell Science (NCCS)

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: University of Michigan


ncbi_country: Australia: Melbourne

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Monash University


ncbi_country: USA

ncbi_submitter: IRHS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. phaseoli var. fuscans


ncbi_country: Japan:Kagoshima; Kagoshima Bay

ncbi_isolation_source: marine sediment

ncbi_organism_name: Sphingobium sp. YG1

ncbi_submitter: Japan Agency for Marine-Earth Science and Technology


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: probiotics

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_strain_identifiers: LR-GG-MoProbi

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 301

ncbi_organism_name: Synechococcus sp. BS301-5m-G53

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: nutrient broth

ncbi_organism_name: Mesorhizobium sp. NBSH29

ncbi_submitter: University of New South Wales


ncbi_submitter: KYUNG HEE UNIVERSITY


ncbi_isolation_source: Dry seeds

ncbi_organism_name: Paenibacillus sp. EKM207P

ncbi_submitter: University of Guelph


ncbi_isolation_source: Gill chamber Rimicaris exoculata metagenome

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_country: Spain

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: HOSPITAL UNIVERSITARIO REINA SOFIA DE CORDOBA


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_country: Ireland: Northern region of ROI

ncbi_isolation_source: cecal contents

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_organism_name: Bacillus subtilis subsp. natto

ncbi_submitter: Toho University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. natto


ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Microcoleus sp. ARI1-A4

ncbi_submitter: Palacky University Olomouc


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Stanford University School of Medicine


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_country: New Zealand

ncbi_organism_name: Leptospira borgpetersenii serovar Hardjo-bovis

ncbi_submitter: Massey University


ncbi_isolation_source: Urinary tract infection

ncbi_organism_name: Morganella morganii

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Barnesiella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Luancheng Agro-Ecosystem Experimental Station; CAS

ncbi_isolation_source: farmland soil

ncbi_organism_name: Cellulomonas sp. Y8

ncbi_submitter: Center for Agricultural Resources Research, IGDB, CAS


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: IHU mediterranee infection


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Candidatus Cryosericum sp.

ncbi_submitter: University of Iowa

ncbi_taxonomy: d__Bacteria;p__Candidatus Cryosericota;c__Candidatus Cryosericia;o__Candidatus Cryosericales;f__Candidatus Cryosericaceae;g__Candidatus Cryosericum;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Caldisericota/Cryosericota group;p__Candidatus Cryosericota;c__Candidatus Cryosericia;o__Candidatus Cryosericales;f__Candidatus Cryosericaceae;g__Candidatus Cryosericum;x__unclassified Candidatus Cryosericum;s__Candidatus Cryosericum sp.


ncbi_country: Tanzania: Ngorongoro Conservation Area

ncbi_isolation_source: skin

ncbi_organism_name: Treponema pallidum subsp. pertenue

ncbi_submitter: Masaryk University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Rhodothermota bacterium

ncbi_submitter: Institut de Ciencies del Mar

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Rhodothermota;x__unclassified Rhodothermota;s__Rhodothermota bacterium


ncbi_organism_name: Enterococcus innesii


ncbi_organism_name: Bacillus tropicus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_submitter: China Jiliang University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Halomonas sp. AOP42-A1-14

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Thiolinea sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China

ncbi_isolation_source: desert regolith

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Opitutia bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Flavobacteriaceae bacterium


ncbi_organism_name: uncultured Tissierella sp.


ncbi_organism_name: Aromatoleum sp.

ncbi_submitter: EPFL


ncbi_organism_name: Bartonella sp. AP172QHHD

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Dajiu Lake

ncbi_isolation_source: sediments

ncbi_organism_name: Nitrospirota bacterium


ncbi_country: Germany

ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: Honduras: Copan

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_country: Peru: Tumbes

ncbi_isolation_source: Hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Programa Nacional de Innovación en Pesca y Acuicultura


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: OR

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_assembly_name: Rumen uncultured genome RUG140

ncbi_organism_name: uncultured Selenomonadales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Boston

ncbi_isolation_source: ocular liquid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Massachusetts Eye and Ear Infirmary


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: Infection

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: Radboud University


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_assembly_name: Rumen uncultured genome RUG10087

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA:Nine Springs Wastewater Treatment Plant; Madison Metropolitan Sewerage District; Dane County; Madison; WI

ncbi_isolation_source: laboratory-scale deammonification bioreactor inoculated with effluent from wastewater treatment plant

ncbi_organism_name: bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: gut metagenome

ncbi_organism_name: Bifidobacterium pseudolongum

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Ground Turkey

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: Japan: Nara

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces kasugaensis

ncbi_submitter: Shanghai Jiao Tong University


ncbi_isolation_source: whole body

ncbi_organism_name: Buchnera aphidicola (Cinara pseudotaxifoliae)

ncbi_submitter: Centre de Biologie pour la Gestion des Populations (CBGP - UMR1062)


ncbi_country: France

ncbi_isolation_source: mastitis

ncbi_organism_name: Escherichia coli

ncbi_submitter: KOlimastIR


ncbi_organism_name: uncultured Fibrobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Advenella sp.

ncbi_submitter: University of Waterloo


ncbi_country: China: Jinan

ncbi_isolation_source: Pus

ncbi_submitter: University College London (UCL)


ncbi_organism_name: Lelliottia amnigena

ncbi_submitter: Institute of Environmental Science and Research


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Levyibacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levyibacteriota bacterium


ncbi_assembly_name: IMG-taxon 2671180043 annotated assembly

ncbi_organism_name: Phytopseudomonas seleniipraecipitans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: United Kingdom: Porton Down

ncbi_isolation_source: Laboratory Derived

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: KP03197 CHD

ncbi_submitter: UK Health Security Agency


ncbi_strain_identifiers: ATCC 6051a

ncbi_submitter: American Type Culture Collection (ATCC)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;x__Bacillus subtilis KCTC 1028 = ATCC 6051a


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Atopobiaceae bacterium UBA4973

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: Finland: the Olkiluoto Island

ncbi_isolate: bin S1.22

ncbi_isolation_source: groundwater from deep subsurface site

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_strain_identifiers: bin S1.22

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Institute for research in cancer and aging (IRCAN), Nice


ncbi_country: Canada: Scotian Shelf

ncbi_isolation_source: pooled samples from sponge host and sea water

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: SponGES


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cryomorphaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Borreliella garinii

ncbi_strain_identifiers: Mek

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_country: Portugal: Matosinhos

ncbi_isolation_source: Low respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: China

ncbi_isolation_source: hot spring

ncbi_organism_name: Vulcaniibacterium gelatinicum

ncbi_submitter: Sun Yat-Sen University


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium AM25-22

ncbi_submitter: BGI


ncbi_country: Portugal: Odemira

ncbi_isolation_source: abscess

ncbi_organism_name: Corynebacterium silvaticum

ncbi_submitter: UFMG


ncbi_assembly_name: IMG-taxon 2606217755 annotated assembly

ncbi_organism_name: Streptococcus gallolyticus


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Faculty of Science, Masaryk University


ncbi_country: USA: MD

ncbi_isolation_source: Baby Wipes

ncbi_submitter: OARSA, CFSAN


ncbi_organism_name: Phenylobacterium sp.


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Teagasc


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Dhaka


ncbi_organism_name: Vibrio cholerae CP1111

ncbi_submitter: CosmosID


ncbi_country: United Kingdom

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_isolation_source: environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: Japan

ncbi_organism_name: Shewanella algae

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: USA: Flathead Lake; MT

ncbi_isolation_source: lake water; P+N amendment

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: University of Montana


ncbi_organism_name: Elusimicrobiales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Washington

ncbi_isolation_source: bicep sheath of a left shoulder

ncbi_organism_name: Cutibacterium acnes 21G

ncbi_submitter: Bumgarner laboratory, Department of Microbiology, University of Washington


ncbi_country: USA: PA

ncbi_isolation_source: spleen mouse

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: Caldicoprobacterales bacterium

ncbi_submitter: University of British Columbia


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Shanghai Ruijin Hospital Affiliated with Jiaotong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Australia: Gatton

ncbi_isolation_source: plant tissue

ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: La Trobe University


ncbi_assembly_name: freshwater MAG --- MJ120716A_bin-0965

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Sterolibacterium sp.

ncbi_submitter: BILS


ncbi_country: USA: Texas

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: James Madison University


ncbi_country: USA: Ohio

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: ground turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. CVM 33953


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola sartorii


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Escherichia coli EC12011

ncbi_submitter: Hackensack-Meridian Health Center for Discovery and Innovation


ncbi_country: Italy: Aosta Valley

ncbi_organism_name: Enterobacteriaceae bacterium PSmelAO1

ncbi_submitter: Free University of Bozen-Bolzano


ncbi_organism_name: Mesorhizobium sp. LNJC398B00

ncbi_submitter: University of Southern California


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acidimicrobiia bacterium


ncbi_country: Colombia

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: United Kingdom: UPaisley; Scotland

ncbi_isolation_source: rinsed milk bottle

ncbi_organism_name: Chryseobacterium lactis

ncbi_submitter: Korea university


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Morocco: Ain Allah; Fez

ncbi_isolation_source: hot spring

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: CNRST


ncbi_country: China: Guanyinshan; Xiamen

ncbi_isolation_source: sediment

ncbi_organism_name: Ketobacter sp. MCCC 1A13808

ncbi_submitter: Key Laboratory of Marine Biogenetic Resources State of Oceanic Administration


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA:San Diego

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: France: Auvergne

ncbi_isolation_source: Pork

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Derby

ncbi_submitter: ANSES


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Paraglaciecola sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Singapore

ncbi_isolation_source: not known

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: Faeces


ncbi_country: Estonia: Vlijandimaa; Viiratsi

ncbi_isolation_source: manure

ncbi_organism_name: Enterococcus faecalis


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China: Shenzhen

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: BGI


gtdb_type_species_of_genus: t

ncbi_isolation_source: tomato pulp

ncbi_organism_name: Lentilactobacillus buchneri

ncbi_strain_identifiers: ATCC 4005

ncbi_submitter: Research Laboratories, Ildong Pharmaceutical


ncbi_country: China: Xinjiang

ncbi_isolation_source: soil

ncbi_organism_name: Evansella tamaricis

ncbi_submitter: Inner Mongolia University


ncbi_country: Egypt

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Grippotyphosa;x__Leptospira interrogans serovar Grippotyphosa str. 2006006986


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universite de Sherbrooke


ncbi_assembly_name: Rumen uncultured genome RUG13080

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Greece

ncbi_isolation_source: Raw sheep milk

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: Germany

ncbi_organism_name: Mycobacterium heckeshornense

ncbi_submitter: Mycobacteriology, National Institute of Infectious Diseases


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Priestia megaterium

ncbi_submitter: University of Alaska Anchorage


ncbi_country: USA:Las Vegas

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_isolation_source: Industrial water

ncbi_organism_name: Roseateles aquatilis

ncbi_submitter: Northwest A&F University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: Cultivarium


ncbi_country: Malaysia

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: NATIONAL INSTITUTES OF HEALTH


ncbi_country: Canada: British Columbia;Vancouver

ncbi_isolation_source: stool

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Roseibium aggregatum

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: Taiwan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hackensack-Meridian Health Center for Discovery and Innovation


ncbi_isolation_source: cold seep

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus safensis

ncbi_submitter: Southern Federal University


ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Vibrio kanaloae

ncbi_submitter: University of Vienna


ncbi_organism_name: Streptomyces sp. C36

ncbi_submitter: Burapha University


ncbi_country: China: Lanzhou

ncbi_organism_name: Pseudomonas oryzihabitans

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Acidaminobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: USA

ncbi_organism_name: Escherichia coli O145:NM str. 06-3484

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O145:NM;x__Escherichia coli O145:NM str. 06-3484


ncbi_submitter: The Roslin Institute (University of Edinburgh)


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: SC


ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Dorea longicatena


ncbi_organism_name: Escherichia coli

ncbi_submitter: King Abdulaziz University


ncbi_organism_name: uncultured Sutterellaceae bacterium


ncbi_isolate: VTEC

ncbi_isolation_source: feces

ncbi_submitter: ISTITUTO SUPERIORE DI SANITA


ncbi_organism_name: Shimia thalassica

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 16ft depth

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levybacteria bacterium RBG_16_35_11


ncbi_country: United Kingdom

ncbi_isolation_source: environment

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: China: Yudu; Jiangxi

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. Y36

ncbi_submitter: Northwest A&F University


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: HOE Legacy IIB net trap

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: SCOPE


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG14608

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Prevotella nigrescens

ncbi_submitter: Hospital Sirio-Libanes


ncbi_assembly_name: Kle_pne IVRI_FBI_620

ncbi_submitter: Indian Veterinary Research Institute


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Vicinamibacterales bacterium


ncbi_organism_name: Niveibacterium sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Wenzhouxiangella sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: South China Agricultural University


ncbi_submitter: University of Hyderabad


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Prosthecobacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Nocardia sp. NPDC127606

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: CEITEC VETUNI


ncbi_isolation_source: human gut

ncbi_organism_name: Firmicutes bacterium AF36-3BH

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium AF36-3BH


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Candidatus Pacearchaeota archaeon

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Archaea;x__Nanobdellati;x__Candidatus Pacearchaeota;x__unclassified Candidatus Pacearchaeota;s__Candidatus Pacearchaeota archaeon


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Lund University


ncbi_isolate: Acidobacteria sp. RBC058

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_strain_identifiers: Acidobacteria sp. RBC058

ncbi_submitter: UNIVERSITY OF WATERLOO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Candidatus Caldatribacteriota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;p__Candidatus Caldatribacteriota;x__unclassified Candidatus Caldatribacteriota;s__Candidatus Caldatribacteriota bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Guangxi

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Stenotrophomonas sp. CFBP8980

ncbi_submitter: INRAE


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: China

ncbi_organism_name: Pseudomonas sp. HLS-6

ncbi_submitter: East China University of Science and Technology


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_organism_name: bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: Sweden: Oerebro

ncbi_isolation_source: Clinical sample; respiratory specimen

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Leibniz Institute of Photonic Technology (IPHT)


ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 47P5

ncbi_submitter: Broad Institute


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Nonomuraea sp. B10E8

ncbi_submitter: Ondokuz Mayis university


ncbi_country: Australia

ncbi_isolation_source: Environmental Meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: CSIRO


ncbi_organism_name: Xanthomonas arboricola

ncbi_submitter: University of Chicago


ncbi_country: Netherlands: Wageningen

ncbi_isolation_source: sugar beet rhizosphere

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Wageningen University


ncbi_submitter: Universtity Hospital Cologne


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Xylanimonas sp.


ncbi_isolation_source: feces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Tepidisphaeraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis


ncbi_assembly_name: Rumen uncultured genome RUG11852

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Ascidiaceihabitans sp.

ncbi_submitter: University of Southern California


ncbi_country: Canada: Lacombe

ncbi_organism_name: Alistipes sp.

ncbi_submitter: AAFC


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Greece: Mouries; Kilkis

ncbi_organism_name: Pseudomonas avellanae

ncbi_strain_identifiers: ICMP 9749

ncbi_submitter: University of Toronto


ncbi_isolation_source: cold seep

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Cephaloticoccus sp.

ncbi_submitter: Stanford University


ncbi_country: Germany

ncbi_isolation_source: Packed chicken meat

ncbi_organism_name: Photobacterium carnosum

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: South Korea: Jeong gol 2 reservoir in Daehak-ro; Nam-gu; Ulsan

ncbi_isolation_source: fresh water

ncbi_organism_name: Segnochrobactrum spirostomi

ncbi_submitter: University of Ulsan


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Absicoccus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Lund University


ncbi_country: China: Beijing

ncbi_organism_name: Anaerofilum hominis

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_isolation_source: caecum

ncbi_organism_name: Lactobacillus gallinarum

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil

ncbi_isolation_source: Mycetomatous lesion of the thigh; leg; and foot

ncbi_organism_name: Nocardia brasiliensis

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Lacrimispora saccharolytica

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Guadeloupe: Pointe de la Grande Vigie; Guadeloupe; France

ncbi_organism_name: Puniceicoccales bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Taiwan

ncbi_isolation_source: Haliotis diversicolor

ncbi_organism_name: Shewanella algae

ncbi_strain_identifiers: AC

ncbi_submitter: National Chung Cheng University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMBL-EBI


ncbi_country: Portugal: Porto

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO/REQUIMTE. Faculdade de Farmacia. Universidade do Porto.


ncbi_organism_name: Paenibacillus aquistagni

ncbi_strain_identifiers: St-s

ncbi_submitter: URMITE


ncbi_country: Russia

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital of Besancon


ncbi_assembly_name: freshwater MAG --- A-1_bin-400

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Switzerland: Geneva

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Geneva University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Ireland

ncbi_isolation_source: Wiltshire cure

ncbi_organism_name: Vibrio hibernica

ncbi_submitter: University College Cork


ncbi_country: Albania: Lezha

ncbi_organism_name: Herbaspirillum sp. RU 5E

ncbi_strain_identifiers: RU 5E

ncbi_submitter: Rutgers University


ncbi_assembly_name: freshwater MAG --- C4_bin-441

ncbi_organism_name: Candidatus Adlerbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Adleribacteriota;x__unclassified Candidatus Adlerbacteria;s__Candidatus Adlerbacteria bacterium


ncbi_country: Canada: Ontario

ncbi_submitter: University of Guelph


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: South Africa: Ethekwini district; KwaZulu-Natal

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Wilmar International Limited


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_submitter: JCVI


ncbi_country: China: Jiangsu

ncbi_isolation_source: sputum

ncbi_submitter: The First Affiliated Hospital of Guangzhou Medical University


ncbi_submitter: The Italian National Institute of Health


ncbi_submitter: HUN-REN Veterinary Medical Research Institute


ncbi_country: Romania

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: USA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine


ncbi_country: Poland

ncbi_isolation_source: artisanal fermented pickles

ncbi_organism_name: Lentilactobacillus buchneri

ncbi_strain_identifiers: CIRM-BIA 2083

ncbi_submitter: Brigham Young University


ncbi_isolation_source: soil

ncbi_organism_name: Mycolicibacterium aurum

ncbi_submitter: Uppsala University


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_isolation_source: Aquatic

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: University of Pennsylvania


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab


ncbi_country: United Kingdom

ncbi_isolation_source: Oral Cavity

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: University of Malaya


ncbi_country: Ghana: Accra

ncbi_isolation_source: Surface swabs of meat

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_isolation_source: Human ear

ncbi_organism_name: Oligella urethralis DSM 7531

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium AF51-6-b8A

ncbi_submitter: BGI-Shenzhen


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Rhodoluna sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: Throat

ncbi_organism_name: Mycoplasmoides pneumoniae 54524

ncbi_submitter: University of Alabama at Birmingham


ncbi_country: Brazil: Minas Gerais

ncbi_organism_name: Pseudomonas amygdali pv. tabaci

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. tabaci


ncbi_country: Russia: Saratov

ncbi_organism_name: Escherichia coli

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Switzerland

ncbi_isolation_source: cow milk

ncbi_organism_name: Acidipropionibacterium acidipropionici

ncbi_submitter: Agroscope


ncbi_isolation_source: Portion of Sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: Liverpool Epidemic Strain

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of medecine and pharmacy RABAT


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: United Kingdom Health Security Agency


ncbi_organism_name: Morganella morganii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Holdemania filiformis

ncbi_submitter: University of Chicago


ncbi_submitter: University of Florida


ncbi_country: Japan

ncbi_isolation_source: Uriue

ncbi_submitter: Toho University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_country: USA: New Hampshire

ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Bacillus cereus group sp. BCN89

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BCN89


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Cryobacterium sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Sweden

ncbi_isolation_source: stool sample

ncbi_submitter: Massey University


ncbi_organism_name: Enterobacter intestinihominis

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Martelella sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_assembly_name: Campylobacter jejuni CVM 41973 v1.0

ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter jejuni CVM 41973

ncbi_submitter: FDA/CVM


ncbi_country: China: Hainan Province

ncbi_isolation_source: rot root of tropical mangrove

ncbi_organism_name: Croceivirga radicis

ncbi_submitter: The Third Institute of State Oceanic Administration


ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Faecalibaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Chapel Hill; North Carolina

ncbi_isolation_source: BAL

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of North Carolina at Chapel Hill


ncbi_country: USA: Tennessee

ncbi_isolation_source: abcess-perirectal

ncbi_organism_name: Escherichia coli

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_organism_name: Tepidimonas sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Tepidimonas;x__unclassified Tepidimonas;s__Tepidimonas sp.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Fusicatenibacter sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: human skin metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Skin swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_organism_name: Actinotignum sp. GS-2025c

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Corynebacterium kroppenstedtii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Canada

ncbi_strain_identifiers: ICMP 4451

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. atropurpurea


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolation_source: SIP-labeled bacteria involved in mucosal sugar uptake in the mouse colon

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Vienna


ncbi_isolation_source: Hand Swabs

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: GADVASU, LUDHIANA, PUNJAB, INDIA


ncbi_organism_name: Acinetobacter towneri

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Levilactobacillus brevis AG48

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Spain: Asturias

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: chicken carcass

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: human gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: North Carolina

ncbi_isolation_source: blood

ncbi_strain_identifiers: NABI 1030

ncbi_submitter: University of Texas Health Science Center - Houston


ncbi_country: Japan:Shizuoka; Shizuoka

ncbi_isolation_source: Non-surgical site of the back of an orthopedic surgery patient

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Keio University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universiti Putra Malaysia


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Leclercia adecarboxylata


ncbi_isolation_source: feces; 4 single-cells amplified by MDA combined with human gut metagenome reads

ncbi_organism_name: [Clostridium] nexile

ncbi_submitter: bioBiome, Inc.


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: USA: Maine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maine at Presque Isle


ncbi_country: Ghana

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Copenhagen


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: CAU


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Lebanon

ncbi_submitter: lebanese american university


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: EMG


ncbi_country: Germany: Wilhelmshaven

ncbi_organism_name: Pacificimonas pallii

ncbi_submitter: HZI-Helmholtz Centre for Infection Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Pseudolactococcus chungangensis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Streptomyces griseofuscus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: metal/plastic

ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: University of Queensland


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chung Shan Medical University


ncbi_country: India: Odisha

ncbi_isolation_source: intestine

ncbi_organism_name: Aeromonas sp. PI_26

ncbi_submitter: Institute of Life Sciences


ncbi_country: Czech Republic

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_submitter: Children's Hospital Affiliated to Shandong University


ncbi_country: China: Ningxia

ncbi_isolation_source: pig fecal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Ottowia sp.

ncbi_submitter: University of Waterloo


ncbi_country: China

ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Tongji Hospital, School of Medicine, Tongji University


ncbi_country: USA

ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Rizhao; Shangdong Province

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Cytobacillus kochii


ncbi_organism_name: Promineifilum sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;g__Candidatus Promineifilum;x__unclassified Candidatus Promineifilum;s__Promineifilum sp.


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus parapneumoniae

ncbi_submitter: Department of Bacteriology I, National Institute of Infectious Diseases


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Michigan


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Pseudomonadaceae bacterium UBA3161

ncbi_submitter: University of Queensland


ncbi_country: China: Chongqing

ncbi_submitter: Third Military Medical University


ncbi_country: Germany

ncbi_isolation_source: Food production environment

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: food production metagenome

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Chinese Academy of Fishery Sciences


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Octadecabacter sp.

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Chryseobacterium sp. SORGH_AS 961

ncbi_strain_identifiers: SORGH_AS 961

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Weeksellaceae;x__Chryseobacterium group;g__Chryseobacterium;x__unclassified Chryseobacterium;s__Chryseobacterium sp. SORGH_AS 961


ncbi_organism_name: Prevotella sp. P5-108

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-8496

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Washington University in Saint Louis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Blautia faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Chitinimonas taiwanensis

ncbi_submitter: Xiamen University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Parma


ncbi_organism_name: Longicatena caecimuris


ncbi_organism_name: Kitasatospora sp. GAS204A


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_organism_name: Pseudoclavibacter helvolus

ncbi_submitter: Centro Integral de Microscopia Electronica (CIME - UNT - CONICET)


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Faecousia sp.


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: Gemmiger qucibialis


ncbi_isolate: AOP38_E1_surf _bin _9

ncbi_organism_name: Staphylococcus equorum

ncbi_strain_identifiers: AOP38_E1_surf _bin _9

ncbi_submitter: Genoscope


ncbi_organism_name: Akkermansia sp.


ncbi_organism_name: Pasteurella multocida subsp. multocida

ncbi_submitter: ICAR National Institute of Veterinary Epidemiology and Disease Informatics (NIVEDI)


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Mycobacterium sp. AMU20-3851

ncbi_submitter: Aichi Medical University


ncbi_organism_name: Eubacteriales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: Quadram Institute Bioscience


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B007;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Acinetobacter variabilis


ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_isolation_source: lung

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Ares Genetics


ncbi_organism_name: Gardnerella sp. Marseille-Q2328

ncbi_submitter: IHU - Mediterranee Infection


ncbi_assembly_name: freshwater MAG --- Loclat_bin-01332

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: Universiteit Gent


ncbi_assembly_name: freshwater MAG --- Erken-D1_bin-0855

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Paraguay: Luque

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_country: Kenya: Nairobi

ncbi_submitter: USAMRD


ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Chitinophaga sp. LS1

ncbi_submitter: University of Reading


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Candidatus Sysuimicrobium calidum

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Sysuimicrobium;s__Candidatus Sysuimicrobium calidum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Sysuimicrobium;s__Candidatus Sysuimicrobium calidum


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Phocaeicola vulgatus


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Portugal

ncbi_isolation_source: wound swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Max Rubner-Institut


ncbi_country: Russia: Chechen Republic

ncbi_isolation_source: Seeds

ncbi_organism_name: Paenibacillus amylolyticus

ncbi_submitter: All-Russia Research Institute for Agricultural Microbiology


ncbi_country: China:Guangzhou; Pearl River

ncbi_isolation_source: river

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Sea institute of Oceanology, Chinese academy of sciences


ncbi_country: China: Jing Zi Habour; Weihai

ncbi_isolation_source: red alga

ncbi_organism_name: Vibrio algivorus

ncbi_submitter: Shandong University at Weihai


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: China: South China Sea

ncbi_isolation_source: coral sample

ncbi_organism_name: Pseudoalteromonas sp. SCSIO_11900

ncbi_submitter: South China Sea Institute of Oceanology


ncbi_strain_identifiers: LD

ncbi_submitter: University of Georgia


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: environmental

ncbi_organism_name: Morganella morganii

ncbi_submitter: NSU Genome Research Institute (NGRI), North South University


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Candidatus Krumholzibacteriia bacterium

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;x__unclassified Candidatus Krumholzibacteriia;s__Candidatus Krumholzibacteriia bacterium


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: dog

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Agathobacter sp.


ncbi_isolation_source: burned soil

ncbi_organism_name: Collimonas fungivorans

ncbi_submitter: Colorado State University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sheffield


ncbi_country: Finland

ncbi_isolation_source: Antibiotic associated diarrhea; human

ncbi_organism_name: Clostridium perfringens

ncbi_strain_identifiers: AAD 1527a

ncbi_submitter: University of Helsinki


ncbi_organism_name: Pseudomonas sp. SJZ074

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Prosthecobacter debontii

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Antarctica: Eastern Antarctica; McMurdo Dry Valleys

ncbi_isolate: MDV bin93

ncbi_isolation_source: soil

ncbi_organism_name: bacterium

ncbi_strain_identifiers: MDV bin93

ncbi_submitter: Monash University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R930;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: USA: FL

ncbi_isolation_source: caecum quail

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Ellagibacter isourolithinifaciens


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Enterobacter vonholyi

ncbi_submitter: Jagannath University


ncbi_isolate: BTB 08-76-lux

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: BTB 08-76-lux

ncbi_submitter: Kalmar county hospital


ncbi_submitter: Memorial Sloan Kettering Cancer Center


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Piscinibacter caeni

ncbi_submitter: Xiamen University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Streptococcus alactolyticus

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Australia

ncbi_isolation_source: ear

ncbi_organism_name: Staphylococcus felis

ncbi_submitter: University of Melbourne


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Georgia Institute of Technology


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_organism_name: Calothrix sp. 336/3

ncbi_submitter: Nanjing Agriculture University


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom: Cardiff

ncbi_isolation_source: Dentoalveolar abscess

ncbi_organism_name: Gemella sp. oral taxon 928

ncbi_submitter: The Forsyth Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Gemellaceae;g__Gemella;x__unclassified Gemella;s__Gemella sp. oral taxon 928


ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: wildlife

ncbi_submitter: Universidad Andres Bello


ncbi_country: Canada: British Columbia

ncbi_isolation_source: clinical sample from patient with gastroenteritis

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Northeastern University


ncbi_isolate: WATER

ncbi_organism_name: Campylobacter jejuni

ncbi_strain_identifiers: WATER;Campylobacter jejuni

ncbi_submitter: LSHTM


ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: France

ncbi_isolation_source: clinical sample

ncbi_submitter: Universite Paris-Sud


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: Max Planck Institute for Evolutionary Biology


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Mali

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- Ki2-D4_bin-0122

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Zhejiang Provincial Center for Disease Control and Prevention


ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Nontoxic sample 1 from Unilever

ncbi_organism_name: Clostridium sp. CMCC3676

ncbi_submitter: KULeuven


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 46 year old man who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Laos

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: USA: Texas

ncbi_isolation_source: bovine feces

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145


ncbi_organism_name: uncultured Oceanospirillaceae bacterium

ncbi_submitter: EMG


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Cellvibrionales bacterium TMED21

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Acinetobacter variabilis


ncbi_country: Russia: St. Petersburg

ncbi_isolation_source: feces

ncbi_submitter: Institute of Chemical Biology and Fundamental Medicine of the Siberian Branch of the Russian Academy


ncbi_isolation_source: Stool

ncbi_submitter: Toho University


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Parasutterella sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Michigan


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: China: Dongying

ncbi_isolation_source: Shengli oilfield at Shandong province

ncbi_organism_name: Thermogutta sp.

ncbi_submitter: East China University of Science and Technology


ncbi_country: Hong Kong

ncbi_isolation_source: Traditional Korean kimchi

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Actinomycetospora corticicola

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Florida


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Escherichia coli

ncbi_submitter: SC


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Portland State University


ncbi_country: China: Beijing

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_country: India: Karnataka

ncbi_isolation_source: blood from cattle with hemorrhagic septicemia disease

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Minnesota


ncbi_organism_name: Herpetosiphon llansteffanensis

ncbi_submitter: Xinjiang Agricultural University


ncbi_country: South Korea

ncbi_isolation_source: mud

ncbi_organism_name: Sedimentimonas flavescens

ncbi_submitter: Chung-Ang University


ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Mexico

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alteromonadaceae bacterium UBA1099

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: EMG


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Klebsiella pneumoniae UHKPC07

ncbi_submitter: JCVI


ncbi_organism_name: Salmonella enterica

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Segatella copri

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Pakistan

ncbi_isolation_source: bovine milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: Italy

ncbi_isolation_source: rectal swab

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_country: USA: San Joaquin County; CA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: California Department of Public Health


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Sporichthyaceae bacterium

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_organism_name: uncultured Rubrivivax sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Elomrane


ncbi_country: Brazil

ncbi_isolation_source: Sewage

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: culture

ncbi_submitter: University of California at Davis


ncbi_country: United Kingdom: York

ncbi_isolation_source: Ancestral PA01

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Warwick


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: Germany

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_assembly_name: IMG-taxon 2595698209 annotated assembly

ncbi_organism_name: Maribacter arcticus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: [Lactobacillus] rogosae

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shanghai

ncbi_isolation_source: lavage fluid

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_isolation_source: sputum

ncbi_organism_name: Nocardia farcinica

ncbi_submitter: Chinese PLA Center for Disease Control and Prevention


ncbi_country: India

ncbi_isolation_source: hospital sewage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho university


ncbi_organism_name: Thiomonas sp. Bio17B3

ncbi_submitter: Genoscope CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp. Bio17B3


ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: Denmark: Hjorring

ncbi_isolation_source: activated sludge from Hjor_18-Q3-R7-51

ncbi_organism_name: Candidatus Caldilinea saccharophila

ncbi_submitter: Aalborg University


ncbi_submitter: Gangwon province Institute of Health & Environment


ncbi_country: China: Luzhou

ncbi_organism_name: Escherichia coli

ncbi_submitter: Southwest Medical University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Limnohabitans sp. Rim8

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Nanjing

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Jiangsu Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA: Evanston; Illinois

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alphaproteobacteria bacterium UBA1509

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: SC


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1393

ncbi_submitter: Broad Institute


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: secretion

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: China

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Thermomonas flagellata

ncbi_strain_identifiers: SYSU G04041

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: mandibular lymph nodes

ncbi_organism_name: Brucella vulpis

ncbi_submitter: JLU


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: Mexico: Guadalajara

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: China:Hubei; Wuhan

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Tokyo Medical and Dental University


ncbi_organism_name: uncultured Puniceicoccaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: UIUC


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_submitter: DS-I Africa


ncbi_organism_name: Treponema succinifaciens


ncbi_organism_name: Gardnerella pickettii

ncbi_submitter: Drexel University College of Medicine


ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: University of Michigan


ncbi_submitter: Xinjiang Agriculture University


ncbi_organism_name: Pseudocitrobacter faecalis

ncbi_submitter: Faculty of Health Sciences


ncbi_organism_name: Scandinavium goeteborgense

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Henan Provincial Hospital of Traditional Chinese Medicine


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: uncultured Ohtaekwangia sp.


ncbi_submitter: Lund University


ncbi_organism_name: uncultured Bacillaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_organism_name: Acetatifactor sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: freshwater MAG --- Umea3_bin-2607

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS


ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Canada: Albert

ncbi_isolation_source: Dinosaur fossil bone

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Princeton University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Bacteroidaceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS CTRL-6

ncbi_isolation_source: activated sludge

ncbi_strain_identifiers: SZAS CTRL-6

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: addis ababa university


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: bacterium

ncbi_submitter: INRA


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Montenegro

ncbi_isolation_source: Montengrin brine cheese

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: University of Donja Gorica


ncbi_organism_name: Anaplasma marginale str. Virginia

ncbi_strain_identifiers: Virginia

ncbi_submitter: Washington State University


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


ncbi_submitter: EPFL


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Holdemania filiformis

ncbi_submitter: EMG


ncbi_country: Australia: Queensland dairy property

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: University of Calgary


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Thermosynechococcus sp.

ncbi_submitter: marine college, shandong university