ncbi_country: Russia: Saratov

ncbi_isolation_source: nitrile contaminated soil

ncbi_organism_name: Rhodococcus sp. M8

ncbi_submitter: Research Institute for Genetics and Selection of Industrial Microorganisms(Genetika)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. M8


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_assembly_level: Scaffold

ncbi_country: USA: WA

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: University of Washington


gtdb_representative: t

ncbi_organism_name: Ferrovibrio terrae

ncbi_submitter: Biology Centre CAS


ncbi_country: United Kingdom

ncbi_isolation_source: lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Oxford


ncbi_country: China: Zhejiang; Hangzhou

ncbi_isolation_source: urine

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Zhejiang university


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Xiamen University


ncbi_assembly_level: Chromosome

ncbi_country: Australia: Adelaide

ncbi_isolation_source: respiratory tract

ncbi_submitter: University of Adelaide


ncbi_country: USA: CO

ncbi_isolation_source: milk bovine cow

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Streptomyces lavenduligriseus

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: NRRL ISP-5487

ncbi_submitter: University of Illinois

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: BGI-Shenzhen


ncbi_country: Australia: Five Islands

ncbi_submitter: OUTBREAK


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-6591

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlamydiae bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;x__environmental samples;s__uncultured Chlamydiae bacterium


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Handley Lab, University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: Lebanon: North

ncbi_strain_identifiers: PAX

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZLSLER


ncbi_organism_name: uncultured Campylobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Minnesota

ncbi_isolation_source: feces

ncbi_submitter: Kansas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Candidatus Sulfotelmatobacter kueseliae

ncbi_strain_identifiers: Peat soil MAG SbA1

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: France: Rade de Villefranche-sur-Mer

ncbi_isolation_source: plastic in seawater

ncbi_organism_name: Marinobacter salarius

ncbi_submitter: Instituto de Biotecnologia


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Denmark: South Greenland; Kap Hegh

ncbi_isolate: KAP bin52

ncbi_isolation_source: soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_strain_identifiers: KAP bin52

ncbi_submitter: Monash University


ncbi_country: Portugal: Porto

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: UCIBIO/REQUIMTE, Laboratory of Bacteriology, Faculty of Pharmacy, University of Porto


ncbi_country: Italy

ncbi_isolation_source: water

ncbi_organism_name: Mycobacterium persicum

ncbi_submitter: University of Lodz


ncbi_assembly_name: freshwater MAG --- Umea2p1_bin-0499

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Haliea sp.


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Colombia: Narino

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Narino


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acetivibrio ethanolgignens

ncbi_submitter: Universidad de Leon


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: China: Guizhou; Fuquan

ncbi_organism_name: Metallibacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Slovakia: Lehota pod Vtacnikom

ncbi_isolation_source: ewe s milk

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Faculty of Natural Sciences, Comenius University in Bratislava


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Czech Republic

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium RIFCSPHIGHO2_02_FULL_47_12


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: Virgin Islands

ncbi_isolate: Acer VI 13708

ncbi_isolation_source: coral polyp

ncbi_organism_name: Candidatus Aquarickettsia rohweri

ncbi_strain_identifiers: Acer VI 13708

ncbi_submitter: Oregon State University


ncbi_isolation_source: healthy adult 3C

ncbi_organism_name: Eubacterium sp. 41_20

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. 41_20


ncbi_country: Sweden

ncbi_isolation_source: abscess

ncbi_organism_name: Mycobacterium tuberculosis BTB12-314

ncbi_submitter: Broad Institute


ncbi_country: China: Guangxi; Dashan

ncbi_organism_name: Acidimicrobiales bacterium


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Northeastern University


ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Nisaea sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_assembly_name: Rumen uncultured genome RUG742

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Limosilactobacillus pontis

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Methylibium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-1993

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Adlerbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Adleribacteriota;x__unclassified Candidatus Adlerbacteria;s__Candidatus Adlerbacteria bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Harrisoniibacteriota;s__Candidatus Harrisonbacteria bacterium RIFCSPHIGHO2_02_FULL_40_20


ncbi_organism_name: Planococcus koreensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA

ncbi_organism_name: Streptomyces canus

ncbi_submitter: McMaster University


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: milk

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Cardiff University School of Medicine


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: Metropolitan Atlanta

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae GA05578

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: Forsyth Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: INRAE


ncbi_isolation_source: metagenome


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: China: Enshi City; Hubei Province

ncbi_isolation_source: Selenium rich soil

ncbi_organism_name: Rhodanobacter sp. LX-99

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Saudi Arabia: KAUST

ncbi_isolation_source: MES reactor inoculated with Red Sea brine pool sample

ncbi_organism_name: Sediminimonas qiaohouensis

ncbi_submitter: KAUST


ncbi_organism_name: uncultured Gaiellales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas spelaei

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: USA: Washington

ncbi_isolation_source: feces

ncbi_submitter: UW


ncbi_country: Taiwan

ncbi_isolation_source: Taiwan

ncbi_strain_identifiers: Clefairy

ncbi_submitter: National Chung Cheng University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Paraburkholderia sp. BL21I4N1


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Kunming Medical University


ncbi_organism_name: Kangiellaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacillus sonorensis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Rhodococcus oxybenzonivorans

ncbi_strain_identifiers: IEGM 28

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: USA: Los Angeles; CA

ncbi_isolation_source: Neck/Axilla

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Granulosicoccus sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Ulupna; NSW

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Shanghai

ncbi_isolation_source: lavage fluid

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: PAGS


ncbi_country: Germany: Koln

ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_isolation_source: 20 years wild ginseng rhizosphere soil

ncbi_organism_name: Variovorax arabinosiphilus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Paraburkholderia sp. BR10872

ncbi_submitter: The James Hutton Institute


ncbi_country: China: Fujian; Xiamen

ncbi_isolation_source: coastal surface water

ncbi_organism_name: Roseovarius carneus

ncbi_submitter: State Key Laboratory of Marine Environmental Science


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Slovakia: Lehota pod Vtacnikom

ncbi_isolation_source: milk

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Faculty of Natural Sciences, Comenius University in Bratislava


ncbi_organism_name: Nocardia sp. NPDC024068

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Medicine Budapest


ncbi_organism_name: Rhizobium puerariae

ncbi_strain_identifiers: TBRC 4938

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Vandammella animalimorsus

ncbi_submitter: Saskatchewan Health Authority


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: France: Marseille

ncbi_isolation_source: bronchial lavage; 49-yr-old woman

ncbi_organism_name: Mycobacterium barrassiae

ncbi_submitter: Uppsala University


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus avium

ncbi_submitter: SC


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1317

ncbi_submitter: Broad Institute


ncbi_country: China: Henan

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: sediment

ncbi_organism_name: Vibrio aerogenes CECT 7868

ncbi_strain_identifiers: CECT 7868

ncbi_submitter: UVEG


ncbi_country: Hong Kong: Chek Chau

ncbi_organism_name: Roseobacter sp. HKCCD7382

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: Poland

ncbi_isolation_source: homemade chicken salad

ncbi_submitter: University of Warsaw


ncbi_country: Peru: Hospital Apoyo; Iquitos

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Bataviae;x__Leptospira interrogans serovar Bataviae str. HAI135


ncbi_organism_name: Pantoea dispersa

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Aggregatibacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: India: Telangana; Patancheru

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Treponema sp.


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: South Africa

ncbi_organism_name: Paraburkholderia kirstenboschensis

ncbi_strain_identifiers: Rau 2D2

ncbi_submitter: University of Pretoria


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: EMG


ncbi_country: Slovenia

ncbi_isolation_source: Broiler

ncbi_submitter: Veterinary Faculty

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: France: Limoges

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Institut Pasteur


ncbi_isolation_source: lake water

ncbi_organism_name: Microcystis aeruginosa

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Japan

ncbi_isolation_source: rice paddy

ncbi_organism_name: Pseudomonas oryzihabitans

ncbi_submitter: Technische Universitaet Muenchen


ncbi_isolation_source: Blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Erasmus University Medical Center


ncbi_organism_name: uncultured Phycisphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Zhejiang

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Solibacter usitatus

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Ruminococcus callidus

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: Chesapeake Bay; Maryland

ncbi_isolation_source: surface seawater

ncbi_organism_name: Pseudoalteromonas sp. SG43-6

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. B2-6-4

ncbi_submitter: Curtin University


ncbi_country: South Korea: Chungcheongnam-do

ncbi_isolation_source: green alga

ncbi_organism_name: Sphingobium limneticum

ncbi_submitter: Guangdong Institute of Microbiology

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Levyibacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levyibacteriota bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Rickettsia endosymbiont of Haemaphysalis japonica

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Polytechnic University of Marche Medical School


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Streptomyces sp. NPDC014792

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Nitrosomonadales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Bifidobacterium sp.


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Streptomyces sp. bgisy095

ncbi_submitter: BGI Research


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Enterococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Asaia bogorensis

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Salmonella sp. NW749

ncbi_submitter: Sichuan University


ncbi_organism_name: Streptomyces hygroscopicus


ncbi_organism_name: Adlercreutzia equolifaciens subsp. celatus


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Pannonibacter indicus

ncbi_submitter: Xiamen University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Bombilactobacillus mellis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: USA: Alabama

ncbi_isolation_source: rhizosphere of the salt marsh grasses

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__environmental samples;s__uncultured candidate division Zixibacteria bacterium


ncbi_organism_name: Micromonospora chersina

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolate: SPRUCE 258

ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_strain_identifiers: SPRUCE 258

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- Ki2-D4_bin-0185

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Saudi Arabia: KAUST

ncbi_isolation_source: anammox granular sludge freshwater column reactor

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: KAUST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter radioresistens


ncbi_country: USA:New Jersey; Wharton State Forest; Batona Field

ncbi_isolation_source: gut dissection

ncbi_organism_name: Mesoplasma whartonense

ncbi_submitter: University of Connecticut


ncbi_isolation_source: Manis javanica

ncbi_organism_name: Escherichia coli

ncbi_submitter: microbial pathogenic ecology group


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Singapore: Jurong East

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering


ncbi_country: USA

ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 1471012

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: freshwater MAG --- MJ-2014_bin-1319

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Synergistes sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Oral swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Sao Paulo


ncbi_country: South Korea

ncbi_isolation_source: sea water

ncbi_organism_name: Reinekea thalattae

ncbi_submitter: Dongguk university


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Coprococcus eutactus

ncbi_submitter: University of Queensland


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS LIN-11

ncbi_isolation_source: activated sludge

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: SZAS LIN-11

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Reyranella soli

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_country: Canada: Alberta

ncbi_isolation_source: coal bed cutting

ncbi_organism_name: Opitutaceae bacterium UBA4046


gtdb_type_species_of_genus: t

ncbi_assembly_name: IMG-taxon 2700988696 annotated assembly

ncbi_organism_name: Pseudonocardia thermophila

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: spleen

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Danish Veterinary Consortium and AniCon


ncbi_organism_name: Sulfurimonas sp. NWX367

ncbi_submitter: Third institute of oceanography, State Oceanic Administration


ncbi_organism_name: Escherichia coli


ncbi_organism_name: Salinibacter ruber M8

ncbi_submitter: Genoscope


ncbi_country: China: Xiaochaidan Lake

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Guangdong

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_organism_name: Candidatus Onstottus arcticum

ncbi_submitter: University of Tennessee

ncbi_taxonomy: d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__;f__;g__Candidatus Onstottus;s__Candidatus Onstottus arcticum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Blastocatellia;x__Blastocatellia incertae sedis;g__Candidatus Onstottus;s__Candidatus Onstottus arcticum


ncbi_organism_name: Methanobrevibacter smithii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Kenya: Talek

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: tomato fruit

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: The Ohio State University


ncbi_organism_name: Pseudomonas sp. URIL14HWK12:I1


ncbi_country: Hong Kong

ncbi_isolation_source: Shatin WWTPs_22 WWTPs effluent

ncbi_organism_name: Shigella flexneri

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Canada: Lethbridge

ncbi_isolation_source: mini-bioreactor of chicken cecal community

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Calgary


ncbi_country: Thailand

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar thailandensis


ncbi_country: Germany: Baiersbronn / Baden-Wuerttem; near tree stump; with nearby small plants rather than grass

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. NBC_00305

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: groundwater

ncbi_organism_name: Syntrophales bacterium


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 1225

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: USA

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Johns Hopkins Bloomberg School of Public Health


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Patescibacteria group bacterium UBA4664

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA4664


ncbi_country: China: Hangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: MBI 600

ncbi_submitter: Aristotle University of Thessaloniki, Greece


ncbi_country: United Kingdom

ncbi_isolation_source: sewage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: University of Utah


ncbi_country: USA: Wyndmoor; Pennsylvania

ncbi_isolation_source: retail chicken

ncbi_organism_name: Campylobacter coli

ncbi_submitter: USDA


ncbi_organism_name: Gemmiger formicilis


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Australia: Shark Bay; Hameline Pool

ncbi_isolation_source: microbial mat from hypersaline water environment

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: University of New South Wales

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_country: Germany: Freising

ncbi_isolation_source: Gut content

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Poland

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate ramp bioreactor

ncbi_organism_name: Thiobacillus sp. 63-78

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Psychrobacillus sp.


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Anaerotruncus colihominis

ncbi_submitter: University of Chicago


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: paddy soil

ncbi_organism_name: Geothrix edaphica

ncbi_submitter: Bioproduction Research Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Schaedlerella sp.


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA:Columbia River; Washington; USA

ncbi_isolation_source: river sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Stappiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Streptomyces sp. NPDC127532

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Ireland

ncbi_isolation_source: Animal (cattle)

ncbi_submitter: ERI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 08.A.05


ncbi_country: China: Chengdu

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: University of Utah


ncbi_country: Portugal: Alcanena

ncbi_isolation_source: activated sludge

ncbi_organism_name: Leucobacter luti

ncbi_submitter: Faculty of Chemical Engineering, University of Porto


ncbi_organism_name: Ekhidna sp.


ncbi_country: Australia

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: The ithree institute


ncbi_country: USA: AZ

ncbi_isolation_source: bovine cow joint cavity

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: soil

ncbi_organism_name: Mycolicibacterium sp. TUM20984

ncbi_submitter: Toho University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Thailand: Lamphun

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Shigella sonnei

ncbi_submitter: JCVI


ncbi_organism_name: Vitreimonas sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Thalassospira sp. GB04J01

ncbi_submitter: University of Tromso


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Huazhong agriculture university


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: INRA


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Guelph

ncbi_submitter: University of Guelph


ncbi_isolation_source: Sponge Cake

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: SC


ncbi_organism_name: Paenibacillus sp. MMO-58

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Philippines

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Alistipes sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Caldisericia bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Dongying

ncbi_isolation_source: crude oil contaminated soil

ncbi_organism_name: Raoultella sp. DY2415

ncbi_submitter: Shandong University


ncbi_organism_name: Roseococcus sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Comamonas thiooxydans

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Mexico: Guadalajara

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: Russia: Perm region

ncbi_isolation_source: salt-contaminated soil samples

ncbi_organism_name: Brevibacterium permense

ncbi_strain_identifiers: VKM Ac-2280

ncbi_submitter: Third Institute Of Oceanography,MNR


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_assembly_name: NCPPB 409

ncbi_isolate: NCPPB 409

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_strain_identifiers: NCPPB 409

ncbi_submitter: nivip

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_isolation_source: Food and food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National University of Ireland, Galway


ncbi_country: Hungary

ncbi_organism_name: Cupriavidus campinensis

ncbi_submitter: Eotvos Lorand University


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Institute of Tobacco Research, Chinese Academy of Agricultural Science


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: cold seep

ncbi_organism_name: Spongiibacteraceae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Escherichia coli

ncbi_submitter: Division of Biomedical Food Research, NIHS


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Germany

ncbi_isolation_source: Spoiled beer

ncbi_organism_name: Levilactobacillus cerevisiae

ncbi_submitter: Northeast Agricultural University


ncbi_isolation_source: Ground Turkey

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: IHU - Mediterranee Infection


ncbi_country: United Kingdom

ncbi_submitter: University College Dublin


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SurvCARE


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Paenibacillus glucanolyticus NBRC 15330

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: screen

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Italy

ncbi_isolation_source: nodules

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Florence


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG10851

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: RNA Bioinformatics and High-Throughput Analysis Friedrich Schiller University Jena


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston

ncbi_isolation_source: tissue

ncbi_organism_name: Klebsiella pneumoniae BWH 47

ncbi_strain_identifiers: BWH 47

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae BWH 47


ncbi_assembly_name: Salmonella enterica CVM N30655-SQ v1.0

ncbi_country: USA: MD

ncbi_isolation_source: Chicken Breast

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium var. 5-

ncbi_submitter: FDA


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG019

ncbi_organism_name: uncultured Selenomonadales bacterium


ncbi_isolation_source: stool

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: water sample from the Indian Ocean

ncbi_organism_name: Pseudomonas aeruginosa ID4365

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_organism_name: Escherichia coli KTE236


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Yersinia rohdei

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: China: Beijing

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Capnocytophaga periodontitidis

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_country: France: Pays de la Loire

ncbi_isolation_source: Poultry

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: Singapore

ncbi_isolation_source: not known

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_isolation_source: lake water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Helicobacter winghamensis

ncbi_submitter: Public Health Agency of Canada


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Australia: Tasmania

ncbi_isolation_source: patient sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: La Trobe University


ncbi_country: USA: New York City

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Columbia University Mailman School of Public Health


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: River Ganges Varanasi; Uttar Pradesh

ncbi_isolation_source: fresh water

ncbi_organism_name: Chryseobacterium sp. VAUSW3

ncbi_submitter: Institute of Microbial Technology


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Levyibacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levyibacteriota bacterium


ncbi_country: France

ncbi_organism_name: Borreliella garinii

ncbi_submitter: INRAe


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Sulfuricurvum sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Polyangiales bacterium

ncbi_submitter: Nanjing University


ncbi_country: USA: California; Middletown

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: UIUC


ncbi_organism_name: Streptomyces sp. NPDC014733

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Center for Genome Regulation (CRG)


ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_organism_name: Candidatus Limadaptatus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limadaptatus;x__unclassified Candidatus Limadaptatus;s__Candidatus Limadaptatus sp.


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Campylobacter sp. LH-2024

ncbi_submitter: Luxembourg Institute of Science and Technology


ncbi_organism_name: Pectobacterium actinidiae

ncbi_submitter: Yunnan Academy of Tobacco Agricultural Sciences


ncbi_organism_name: Staphylococcus sp. Ze3

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Calgary


ncbi_organism_name: Bacillus altitudinis


ncbi_organism_name: Salmonella sp. s59944

ncbi_submitter: Zhejiang university


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Lunds Universitet


ncbi_organism_name: Arcobacteraceae bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: uncultured Vagococcus sp.

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_organism_name: Enterobacter hormaechei

ncbi_strain_identifiers: DR 110-CEF

ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: Leifsonia sp. McL0607

ncbi_submitter: New Zealand Forest Research Institute


ncbi_organism_name: Phycisphaerales bacterium JB064

ncbi_submitter: JNTUH


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Technical University of Munich


ncbi_organism_name: uncultured Caulobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: China: Nanjing

ncbi_isolation_source: laboratory-scale bioreactor denitrification and anammox communities

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: NanJing University


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Germany

ncbi_organism_name: Vibrio navarrensis

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Planktotalea sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: Dietary Supplement

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: USFDA


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Stenotrophomonas sp.


ncbi_country: Hungary

ncbi_isolation_source: Oil-contaminated soil

ncbi_organism_name: Dietzia sp. E1

ncbi_submitter: Peking University


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Serinicoccus profundi MCCC 1A05965

ncbi_submitter: Key Laboratory of Marine Biogenetic Resources, Third Institute of Oceanography, State Oceanic Administration (SOA), PR China


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Bifidobacterium gallicum

ncbi_submitter: EMG


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: University of Southern California


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: cervical

ncbi_organism_name: Corynebacterium sp. HMSC070B05

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_country: USA

ncbi_organism_name: Aeromonas sp. ASNIH3

ncbi_submitter: NIH


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: South Africa: THABO MOFUTSANYANA; Free State Province

ncbi_isolation_source: Cows Milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: USA: MD

ncbi_organism_name: Heyndrickxia coagulans

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Agrobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universite Paris Sud


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: Antarctic soil

ncbi_organism_name: Rhodococcus sp. AQ5-07

ncbi_submitter: National Antarctic Research Centre Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. AQ5-07


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Reyranella sp.

ncbi_submitter: Zhejiang University


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_isolation_source: pickled radish

ncbi_organism_name: Chryseobacterium cucumeris

ncbi_submitter: Jiangsu University


ncbi_country: South Korea: Gangwon-do

ncbi_isolation_source: soil

ncbi_organism_name: Spirosoma profusum

ncbi_submitter: Seoul Women's University


ncbi_organism_name: Salmonella enterica


ncbi_country: Algeria

ncbi_isolation_source: ready-to-eat foods

ncbi_submitter: Institute of Sciences of Food Production (ISPA)


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_organism_name: Escherichia coli 2.3916

ncbi_submitter: E. coli Reference Center


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 308

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Calgary


ncbi_country: Croatia

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: salt crust

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium QS_5_54_17


ncbi_organism_name: uncultured Tissierellia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__environmental samples;s__uncultured Tissierellia bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Actinoplanes sp. NPDC051470

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Shandong

ncbi_isolation_source: river water

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Shandong University


ncbi_isolation_source: post chill chicken carcass

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Bacteroidales bacterium


ncbi_country: Germany: Berlin

ncbi_isolation_source: Perineum swab

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of South Africa


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium RIFCSPHIGHO2_02_FULL_60_44


ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: EBI


ncbi_country: USA: Yellowstone National Park

ncbi_isolation_source: Hot spring water

ncbi_organism_name: Thermocrinis sp.

ncbi_submitter: Montana State University


ncbi_organism_name: Prevotella micans

ncbi_submitter: EMG


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: hospital

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_assembly_name: Rumen uncultured genome RUG10763

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus T92889

ncbi_submitter: Broad Institute


ncbi_country: Canada: Guelph; Ontario

ncbi_isolation_source: feces

ncbi_organism_name: Slackia isoflavoniconvertens

ncbi_strain_identifiers: OB21 GAM31

ncbi_submitter: UCSF


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Halioglobus sp.

ncbi_submitter: The University Hong Kong


ncbi_assembly_name: Salmonella enterica CVM N50437 v1.0

ncbi_country: USA: NY

ncbi_isolation_source: Chicken Wings

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a 3.0 um filter

ncbi_organism_name: Ignavibacteria bacterium CG2_30_36_16

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__unclassified Ignavibacteria;s__Ignavibacteria bacterium CG2_30_36_16


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: Denmark: Kongens Lyngby

ncbi_isolation_source: wastewater

ncbi_organism_name: Acidovorax sp. IB03

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Swine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Cambridge

ncbi_isolation_source: stool


ncbi_country: South Korea

ncbi_isolation_source: soil inside cave

ncbi_organism_name: Nocardia speluncae

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: female child feces

ncbi_organism_name: Escherichia coli O25b:H4-ST131

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: MORINAGA MILK INDUSTRY CO.,LTD.


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_organism_name: Candidatus Limnocylindrus sp.

ncbi_submitter: University of Southern California

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;x__unclassified Candidatus Limnocylindrus;s__Candidatus Limnocylindrus sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wyoming


ncbi_organism_name: Nonomuraea fuscirosea

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Serratia fonticola

ncbi_submitter: University Hospital Basel


ncbi_country: Canada

ncbi_isolation_source: eye

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA135

ncbi_submitter: Broad Institute


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: Argentina

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Lentimonas sp.

ncbi_submitter: Marine Biological Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__Verrucomicrobiota incertae sedis;g__Lentimonas;x__unclassified Lentimonas;s__Lentimonas sp.


ncbi_country: Norway: Biologen; Trondheim fjord

ncbi_isolation_source: sediment

ncbi_organism_name: Streptomyces tardus

ncbi_submitter: SINTEF Industry


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: West China Hospital, Sichuan University


ncbi_assembly_name: Brucella abortus I-29

ncbi_country: Russia

ncbi_organism_name: Brucella abortus

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Netherlands

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University Medical Center Groningen


ncbi_country: Pacific Ocean

ncbi_isolation_source: sea water

ncbi_organism_name: Pseudophaeobacter profundi

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Algeria: El Ghadir region

ncbi_isolation_source: Rayeb (fermented milk)

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Instituto de Productos Lacteos de Asturias, Consejo Superior de Investigaciones Cientificas


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFCSPHIGHO2_12_FULL_37_29


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Taizhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Kluyvera ascorbata

ncbi_submitter: Institute of Environmental Science and Research


ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: Northeast institute of Geography and Agroecology, Chinese Academy of Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides faecis

ncbi_submitter: EMG


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Queensland


ncbi_country: China: Hangzhou

ncbi_organism_name: Chromobacterium haemolyticum

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_country: Puerto Rico: CEIBA

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Acetobacter sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M076S1

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Xinjiang Normal University


ncbi_country: Italy: L Aquila

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: IZSAM


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Enterobacteriaceae bacterium UBA3421


ncbi_country: Russia: Perm

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences


ncbi_country: Japan: Chubu

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Kuwait

ncbi_isolation_source: Tracheal Secretion

ncbi_submitter: Kuwait University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli

ncbi_submitter: Proteon Pharmaceuticals


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Salmonella bongori


ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Marinoscillum sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_assembly_name: IMG-taxon 2593339147 annotated assembly

ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Germany: Augsburg

ncbi_isolation_source: Skin swab

ncbi_submitter: Helmholtz Center Munich


ncbi_submitter: Columbia University Medical Center


ncbi_organism_name: Neisseria lactamica

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Cheese

ncbi_submitter: AARHUS UNIVERSITY, DEPARTMENT OF FOOD SCIENCE


ncbi_isolation_source: Fish liver

ncbi_organism_name: Mycobacterium pseudoshottsii

ncbi_submitter: Laboratory of Aquatic Medicine, School of Veterinary Medicine, Nippon Veterinary and Life Science University


ncbi_assembly_name: IMG-taxon 2687453794 annotated assembly

ncbi_organism_name: Burkholderia sp. WP9


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Leptolyngbya sp. GB1-A1

ncbi_submitter: Institute of Hydrobiology


ncbi_organism_name: Pedobacter alpinus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Streptococcaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Paenarthrobacter sp. 2TAF44

ncbi_submitter: CCRP


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_organism_name: Xanthomonas sacchari

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Boston Area

ncbi_isolation_source: Leaf Litter

ncbi_organism_name: Curtobacterium sp. MCBA15_012

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Hong Kong

ncbi_isolation_source: Stool

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Citrobacter sp.


ncbi_organism_name: Leclercia adecarboxylata


ncbi_country: USA: Oklahoma

ncbi_isolation_source: lignin degrading enrichment developed from a cocktail of rumen fluid and termite gut

ncbi_organism_name: Arthrobacter sp. RT-1

ncbi_submitter: Oklahoma State Universtiy


ncbi_country: Canada: Buffalo Point; MB

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Public Health Agency of Canada


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. microtus;x__Yersinia pestis subsp. microtus bv. Caucasica


ncbi_organism_name: Bifidobacterium bifidum


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Succinatimonas hippei

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_submitter: Institute of Molecular Biology NAS Armenia


ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Thermotogae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;x__environmental samples;s__uncultured Thermotogae bacterium


ncbi_organism_name: Roseiflexaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Salmonella sp. SKLX061724

ncbi_submitter: Zhejiang university


ncbi_organism_name: Rhizobium sp. NPDC092011

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_isolate: SPRUCE 580

ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 580

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Alistipes sp.


ncbi_organism_name: uncultured Candidatus Cloacimonas sp.

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;x__environmental samples;s__uncultured Candidatus Cloacimonas sp.


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Thermomonas sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Candidatus Puniceispirillales bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__Candidatus Puniceispirillales bacterium


ncbi_country: Denmark: Esbjerg W

ncbi_isolation_source: activated sludge from EsbW_18-Q3-R4-48

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: uncut heroin sample

ncbi_organism_name: Shouchella clausii

ncbi_submitter: Bielefeld University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Center for Microbial Communities


ncbi_isolate: SPRUCE 423

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 423


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Vellozia epidendroides specimens

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater outflow

ncbi_organism_name: Escherichia coli

ncbi_submitter: BIOTEC


ncbi_country: USA: MN

ncbi_isolation_source: root

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: China

ncbi_isolation_source: biofilm reactor

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Research Center for Eco-Environmental Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella pneumoniae VAKPC309

ncbi_submitter: JCVI


ncbi_country: Bangladesh

ncbi_isolation_source: soil

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_submitter: Chulalongkorn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: California Department of Public Health


ncbi_organism_name: Spirochaetales bacterium


ncbi_strain_identifiers: NBRC 3521

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas chlororaphis group;s__Pseudomonas chlororaphis;sb__Pseudomonas chlororaphis subsp. aureofaciens;x__Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 143

ncbi_submitter: Oregon State University


ncbi_organism_name: uncultured Christensenella sp.


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Klebsiella sp. 77381

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-DS1

ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_country: New Zealand: South Island

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: The University of Queensland


ncbi_isolation_source: lake water

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: China: AnShun; Guizhou

ncbi_isolation_source: 3d patty soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Peking university


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus infantarius

ncbi_submitter: BGI-Shenzhen


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacteroides caccae CL03T12C61

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: uncultured Facklamia sp.

ncbi_submitter: EMG


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate stock bioreactor

ncbi_organism_name: Microbacterium sp. 71-36

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Waltera sp.


ncbi_country: Canada: Alberta;Edmonton

ncbi_isolation_source: rectal swab

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: Sweden

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Lund University


ncbi_country: Pacific Ocean: Chile-Peru Current Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Czech Republic: Pardubice region

ncbi_isolation_source: genital tract swabs

ncbi_organism_name: Taylorella equigenitalis

ncbi_submitter: State Veterinary Institute Prague


ncbi_country: Italy: Trento

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Bacillus sp. E(2018)

ncbi_submitter: University of Trento

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. E(2018)


ncbi_country: Canada: Sherbrooke

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: anal swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Faecousia sp.


ncbi_country: Viet Nam: Soc Trang

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Science, Viet Nam National University Ho Chi Minh City


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW305-3-2-15-C-TSA2

ncbi_submitter: Arkin Lab


ncbi_country: Korea

ncbi_organism_name: Methylobacterium oryzae CBMB20

ncbi_submitter: KRIBB


ncbi_assembly_name: Salmonella enterica CVM N30683-SQ v1.0

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_organism_name: uncultured Acholeplasmataceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Back swab

ncbi_organism_name: Lysinibacillus capsici

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Enterococcus sp. C44

ncbi_submitter: Northwest A & F University


ncbi_country: Spain

ncbi_isolation_source: Abbatoir

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: ISCIII


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Dermatophilus congolensis

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Paraburkholderia sp.

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: Germany: Jena

ncbi_isolation_source: rectal swab neonate

ncbi_organism_name: Escherichia coli

ncbi_submitter: Jena University Hospital


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Zhejiang University


ncbi_country: Canada: North Alberta

ncbi_isolation_source: Suncor tailing pond sample

ncbi_organism_name: Caldiserica bacterium UBA4822

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Caldisericota/Cryosericota group;p__Caldisericota;x__unclassified Caldisericota;s__Caldiserica bacterium UBA4822


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Ignavibacteriaceae bacterium


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_country: China: Zhejiang; Ningbo

ncbi_isolation_source: forest soil

ncbi_organism_name: Pseudomonas sp. Hp2

ncbi_submitter: Ningbo University


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: USA: Vershire; Ely Copper Mine

ncbi_organism_name: bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Peregrinibacteria bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium


ncbi_organism_name: Serratia sp. BNK-11

ncbi_submitter: National Institute of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. BNK-11


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Aeromonas sobria

ncbi_submitter: Universidad de Santiago de Compostela


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_country: Mexico: Veracruz; Ayahualulco; Ocotepec

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Rhizobium sp. CCGE532

ncbi_submitter: Center for Genomic Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_isolation_source: Corse; leaf or stem petiole

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: INRAE


ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Puia sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Sphaerochaeta sp.


ncbi_country: United Kingdom: Esthwaite Water

ncbi_isolation_source: Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water

ncbi_organism_name: Bradyrhizobium sp. PARBB1

ncbi_submitter: CNRS-AMU


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: freshwater MAG --- LaPlata-a_bin-0370

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Sphingobium sp. AEW013

ncbi_submitter: DOE Joint Genome Institute