ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: China: Chengdu; Sichuan

ncbi_genome_representation: full

ncbi_isolation_source: Sewage

ncbi_organism_name: Acinetobacter sp. WCHAc060025

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


gtdb_representative: t

ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_assembly_level: Scaffold

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Atlanta; GA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Emory University


ncbi_submitter: Tarim University


ncbi_isolation_source: river water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Italy

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bologna


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Nevskiaceae bacterium

ncbi_submitter: University of Oklahoma


ncbi_assembly_level: Complete Genome

ncbi_country: Mexico: Mexico city

ncbi_isolation_source: bronchial washing

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Facultad de Medicina, Universidad Nacional Autonoma de Mexico


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Thermoflexales bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Streptomyces sp. NPDC046332

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Michigan

ncbi_isolation_source: Hospital hot water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_isolation_source: Potable Water Dispenser (PWD) Ambient (MCD) from International Space Station

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: J.Craig Venter Institute


ncbi_organism_name: Methylobacter sp.


ncbi_isolation_source: blood and spinal fluid

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Chiba University


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: EMG


ncbi_submitter: University Hospital of Larissa


ncbi_country: India: Perambalur; Tamil Nadu; Stone Temple

ncbi_isolation_source: Granite Building Material

ncbi_organism_name: Mycobacterium sp. PS03-16

ncbi_submitter: University of New Hampshire


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_organism_name: Clostridia bacterium


ncbi_country: Tanzania

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Belgium

ncbi_organism_name: Streptococcus minor DSM 17118

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus minor;x__Streptococcus minor DSM 17118

ncbi_type_material_designation: assembly from type material


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Legionellales bacterium UBA7366

ncbi_submitter: University of Queensland


ncbi_country: China: Taiwan;Kueishan Island

ncbi_isolation_source: hydrothermal vent sediment

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Shanghai Ocean University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: bacterium

ncbi_submitter: Inha University


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1386

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Thailand: Ubon/Trakam

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia territorii

ncbi_submitter: Northern Arizona University


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Syntrophomonas sp. UBA4889


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Candidatus Planktophila sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__environmental samples;s__uncultured Candidatus Planktophila sp.


ncbi_organism_name: Streptomyces cellulosae

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Staphylococcus aureus A9781


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: University of Duisburg Essen


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: USA: Dallas; Texas

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Texas at Dallas


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Lund University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: AAFC


ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Environmental Microbiology OMICS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: USA: AK

ncbi_organism_name: Escherichia sp. MOD1-EC5948

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_country: China: Hohhot

ncbi_isolation_source: acidic-Gruel

ncbi_submitter: university


ncbi_organism_name: Latilactobacillus sakei subsp. sakei

ncbi_submitter: Erciyes University


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: HOE Legacy IIB net trap

ncbi_organism_name: Saccharospirillaceae bacterium

ncbi_submitter: SCOPE


ncbi_country: Russia: Moscow

ncbi_isolation_source: vent. liquor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SRCAMB


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Spirosoma fluviale

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Guangxi; Dachang

ncbi_isolation_source: sediment

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: United Kingdom: Newcastle upon Tyne

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Wenzhou-Kean University: Kean University - Wenzhou Campus


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_assembly_name: Rumen uncultured genome RUG12249

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: oxycline seawater

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: Sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Colorado

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_isolation_source: chicken gut metagenome


ncbi_country: China: Shenzhen

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Affiliated Shenzhen Sixth Hospital of Guangdong Medical University


ncbi_country: United Kingdom: Edinburgh; Royal Infirmary Edinburgh; Neonatal unit

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Cork Institute of Technology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Leibniz Institute of Photonic Technology (IPHT)


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Health Canada


ncbi_country: United Kingdom: Norfolk

ncbi_isolation_source: Oesophageal brush sample

ncbi_organism_name: Rothia sp. P3C3.S176

ncbi_submitter: Quadram Institute BioScience

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. P3C3.S176


ncbi_organism_name: Escherichia coli

ncbi_submitter: Duke University


ncbi_country: Spain

ncbi_isolation_source: clam larvae aquaculture

ncbi_organism_name: Phaeobacter inhibens

ncbi_submitter: Leibniz Institute DSMZ


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Italy

ncbi_isolation_source: bakery starter

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_strain_identifiers: CIRM-BIA 697

ncbi_submitter: Brigham Young University


ncbi_country: USA: Pennsylvania;Pittsburgh

ncbi_isolation_source: lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_country: Poland

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: USA: Denver; CO

ncbi_isolation_source: nares

ncbi_submitter: University of Colorado


ncbi_organism_name: Prochlorococcus sp.

ncbi_submitter: Dekas Lab, Stanford University


ncbi_country: Malaysia: Selangor

ncbi_isolation_source: kidney

ncbi_organism_name: Leptospira borgpetersenii

ncbi_submitter: UPM


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_submitter: Univeristy of South Australia


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Coprococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Brazil: Minas Gerais

ncbi_organism_name: Pseudomonas coronafaciens pv. garcae

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. garcae


ncbi_country: USA: WA

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of Washington


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_assembly_level: Chromosome

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Egypt: Alexandria

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Faculty of Pharmacy, Alexandria University


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: soil organic matter[ENVO:04000008]

ncbi_organism_name: Streptomyces sp. ISL-24

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_organism_name: Corynebacterium sp. KPL1998

ncbi_submitter: Broad Institute


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Jacksoniibacteriota;s__Candidatus Jacksonbacteria bacterium RIFCSPHIGHO2_02_FULL_43_10


ncbi_country: Indian Ocean

ncbi_isolation_source: gill

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Candidatus Thiodiazotropha;s__Candidatus Thiodiazotropha sp. (ex Epidulcina cf. delphinae)


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Pseudofrankia sp. BMG5.37

ncbi_submitter: University of Carthage


ncbi_country: USA: New York

ncbi_isolation_source: cystic fibrosis isolate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of Microbiology, Veterinary University Vienna


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Uppsala University


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: host s whole body

ncbi_organism_name: Buchnera aphidicola (Cinara splendens)

ncbi_submitter: Centre de Biologie pour la Gestion des Populations (CBGP - UMR1062)


ncbi_country: Ghana: Korle-Gonno Lake

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Ghana


ncbi_isolation_source: Fish farm

ncbi_organism_name: Candidatus Ichthyocystis sparus

ncbi_submitter: Functional Genomics Genter Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Candidatus Ichthyocystis;s__Candidatus Ichthyocystis sparus


ncbi_country: Canada: Ontario

ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: University of Florida


ncbi_organism_name: Herbidospora cretacea

ncbi_submitter: University of Illinois


ncbi_country: China

ncbi_isolation_source: Secretion

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Nigeria

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Prevotella sp.

ncbi_submitter: UIUC


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ISU 883

ncbi_submitter: USDA-ARS


ncbi_organism_name: Streptomyces sp. NBC_00328

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Bacillus pacificus

ncbi_submitter: Norwegian University of Life Sciences, Faculty of Veterinary Medicine


ncbi_country: South Africa: Tau Tona mine in Carletonville district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Methyloversatilis universalis

ncbi_submitter: University Duisburg-Essen


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Simonsiella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Corynebacterium lemuris

ncbi_submitter: Yunnan University


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil: Recife

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Aggeu Magalhaes - FIOCRUZ - Brazil


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter apodemus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia

ncbi_isolation_source: plant

ncbi_organism_name: Rathayibacter tanaceti

ncbi_strain_identifiers: VKM Ac-2761

ncbi_submitter: PSCBR RAS G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS


ncbi_country: USA: Ohio;Wooster

ncbi_isolation_source: distal midgut region V4

ncbi_organism_name: Candidatus Pantoea carbekii

ncbi_strain_identifiers: US

ncbi_submitter: The Ohio State University


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Brevundimonas poindexterae

ncbi_submitter: Tang lab


ncbi_isolation_source: cloacal swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Henan Agricultural University


ncbi_country: France

ncbi_isolation_source: stool

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Functional Genomics Lyon (IGFL)


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Canadian Research Institute for Food Safety


ncbi_country: Egypt: Wadi Natrun

ncbi_isolation_source: saline lake

ncbi_organism_name: Halorhodospira sp. 9622

ncbi_submitter: Bellevue University


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: nodules

ncbi_organism_name: Mesorhizobium sp. B292B1B

ncbi_submitter: Curtin University


ncbi_assembly_name: Rumen uncultured genome RUG12487

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Hunan

ncbi_isolation_source: clinically diseased pig

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Enterococcus sp. AZ058

ncbi_submitter: Broad Institute


ncbi_country: USA: San Diego; CA

ncbi_isolation_source: urine

ncbi_organism_name: Staphylococcus epidermidis


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: Screen swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rickettsia typhi

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Oregon

ncbi_isolation_source: aged Cheddar

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Oregon State University


ncbi_country: Thailand: Sing Buri Province

ncbi_isolation_source: water

ncbi_organism_name: Neochlamydia sp. AcF84

ncbi_submitter: University of Vienna


ncbi_country: China: GuangZhou

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Singapore Food Agency


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_assembly_name: freshwater MAG --- Umea1_bin-3888

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Pseudescherichia vulneris

ncbi_submitter: University of Veterinary Sciences


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Candidatus Multivoradales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Thermoanaerobaculia;o__Candidatus Multivoradales;x__unclassified Candidatus Multivoradales;s__Candidatus Multivoradales bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: uncultured Francisella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Wyoming


ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Gemmiger formicilis


ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos (INTA)


ncbi_organism_name: uncultured Phycisphaeraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Leptospirales bacterium


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_organism_name: uncultured Candidatus Kuenenia sp.

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;x__environmental samples;s__uncultured Candidatus Kuenenia sp.


ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bifidobacterium longum


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_country: Canada: Lacombe

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Italy

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: United Kingdom:Northern Ireland

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Argentina

ncbi_isolation_source: soil

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Lactobacillus intestinalis


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Michigan

ncbi_isolation_source: University of Michigan Health System

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Michigan


ncbi_country: Japan:Shizuoka; Shimoda; Tanoura Bay

ncbi_isolation_source: sea water

ncbi_organism_name: Acidovorax sp. NB1

ncbi_submitter: Bacteriology, Department of Basic Medicine, Faculty of Medical Science, Kyushu University


ncbi_country: China: Wuyi; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: South china normal university


ncbi_isolation_source: sewage

ncbi_organism_name: Pseudomonas wenzhouensis

ncbi_submitter: Wenzhou Medical University


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Case Western Reserve University School of Medicine


ncbi_country: Japan

ncbi_organism_name: Mycobacterium kiyosense

ncbi_submitter: Department of Mycobacteriology, Leprosy Research Center, National Institute of Infectious Diseases - Japan


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Ares Genetics


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Loyola University Chicago


gtdb_type_species_of_genus: t

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Alcaligenaceae;g__Achromobacter;s__Achromobacter xylosoxidans;x__Achromobacter xylosoxidans NBRC 15126 = ATCC 27061


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Harryflintia acetispora

ncbi_submitter: BGI


ncbi_country: Poland

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Cross-sectoral framework for quality Assurance Resources for countries in the European Union – CARE


ncbi_country: South Korea: Jeju

ncbi_isolation_source: tree sap

ncbi_organism_name: Rahnella aceris

ncbi_submitter: BioPS Co., Ltd.


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Escherichia coli 5.0588

ncbi_submitter: E. coli Reference Center


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Heidelberg University Hospital


ncbi_isolation_source: Milk filter (dairy cow farm)

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA


ncbi_country: Pacific Ocean

ncbi_isolation_source: hydrothermal sediments

ncbi_organism_name: Kosmotoga pacifica

ncbi_submitter: The Third Institute of Oceanography, State Oceanic Administration


ncbi_organism_name: Nocardiopsis aegyptia

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: IMG-taxon 2667527444 annotated assembly

ncbi_organism_name: Lentzea xinjiangensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Rossellomorea sp. LJF3

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Serratia ficaria

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Candidatus Dadabacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Dadabacteria;x__unclassified Candidatus Dadabacteria;s__Candidatus Dadabacteria bacterium


ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Australia: Perth

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Hangzhou First People's Hospital


ncbi_country: Bangladesh

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Digestate

ncbi_organism_name: Brucella anthropi

ncbi_submitter: NORWEGIAN UNIVERSITY OF LIFE SCIENCES


ncbi_country: China: Hong Kong

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: catheter

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Bacillus anthracis str. Vollum

ncbi_strain_identifiers: Vollum

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus anthracis;x__Bacillus anthracis str. Vollum


ncbi_assembly_name: Isolate 4

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kalmar county hospital


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_assembly_name: freshwater MAG --- MJ110712A_bin-252

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Utah


ncbi_country: Mexico

ncbi_isolation_source: parent strain ID4365

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: UNAM


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_isolation_source: Human

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Liaoning

ncbi_isolation_source: lung

ncbi_submitter: Institute of Special Animal and Plant Sciences, The Chinese Academy of Agricultural Sciences,


ncbi_organism_name: Serratia surfactantfaciens

ncbi_submitter: National University of Colombia


ncbi_country: USA: Plum Island; MA

ncbi_isolation_source: Filtered seawater (<1uM filter)

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_organism_name: Aestuariivita sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EBI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Morganella morganii

ncbi_submitter: Agroscope


ncbi_country: USA

ncbi_isolation_source: paperboard

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: NCTR/FDA


ncbi_organism_name: Parabacteroides distasonis ATCC 8503

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides distasonis;x__Parabacteroides distasonis ATCC 8503


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Ligilactobacillus murinus


ncbi_isolation_source: Symbiodiniaceae culture

ncbi_organism_name: Nioella sp. MMSF_3534

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_isolation_source: rat gut

ncbi_organism_name: Clostridiales bacterium UBA7081

ncbi_submitter: University of Queensland


ncbi_isolation_source: feces

ncbi_organism_name: Megamonas rupellensis

ncbi_submitter: BGI


ncbi_country: Sudan

ncbi_isolation_source: Mycetoma Lesion

ncbi_organism_name: Streptomyces sudanensis

ncbi_submitter: Newcastle University


ncbi_organism_name: Streptomyces sp. NPDC059552

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Czech Republic: Zofinsky prales National Nature Reserve

ncbi_isolation_source: Decomposed wood of Abies alba; 16-38 years decomposition

ncbi_organism_name: Luteibacter sp. dw_328

ncbi_submitter: Czech Academy of Science


ncbi_country: United Kingdom

ncbi_isolation_source: Laboratory

ncbi_organism_name: Streptomyces fungicidicus

ncbi_submitter: University of Manchester


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: marine

ncbi_organism_name: Flavobacteriales bacterium


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Chitinophagales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Thermovirga sp.

ncbi_submitter: Technical University of Denmark


ncbi_country: Indian Ocean: Southwest Indian Ocean

ncbi_isolation_source: sea water

ncbi_organism_name: Gallaecimonas pentaromativorans


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1199

ncbi_submitter: Broad Institute


ncbi_country: China: Guangxi

ncbi_isolation_source: plant

ncbi_organism_name: Actinotalea sp. M2MS4P-6

ncbi_submitter: Zunyi Medical University


ncbi_country: India

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Institute for Research In Tuberculosis


ncbi_country: Malaysia: Terengganu

ncbi_isolation_source: Aquaculture pond water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Pseudoalteromonas sp. CnMc7-13

ncbi_submitter: Meyer Microbes Lab


ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: Rumen uncultured genome RUG10741

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Qingdao

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Shandong University


ncbi_country: Portugal: Porto

ncbi_isolation_source: Urinary Tract Infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: not available

ncbi_submitter: WTSI


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_organism_name: Streptococcus agalactiae BSU133

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: China

ncbi_submitter: Renji Hospital, School of Medicine, Shanghai Jiaotong University


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Parasporobacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: south China sea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Agrococcus sp. SCSIO52902

ncbi_submitter: South China Sea Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Actinopolymorpha sp. B9G3

ncbi_submitter: Ondokuz Mayis university


ncbi_organism_name: Xanthomonas phaseoli pv. dieffenbachiae

ncbi_submitter: Wageningen University & Research


ncbi_assembly_name: E. coli A192PP

ncbi_submitter: LSHTM


ncbi_country: USA: Maine

ncbi_submitter: University of Maine at Presque Isle


ncbi_country: Denmark: Hellerup

ncbi_isolation_source: Coastal water

ncbi_organism_name: Vibrio sp. S11_S32

ncbi_submitter: DTU


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Alachua; FL

ncbi_isolation_source: feces

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli KTE97

ncbi_submitter: Broad Institute


ncbi_organism_name: Enterobacter hormaechei

ncbi_strain_identifiers: ZHH

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: China: Luoyang

ncbi_isolation_source: tissue from esophageal cancer patient

ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: Henan University of Science and Technology Affiliated First Hospital


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-363-A16

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: South Korea

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yonsei University College of medicine


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium GW2011_GWA2_33_20


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Faecalicatena sp.

ncbi_submitter: Biomin Research Center


ncbi_organism_name: Stomatobaculum longum

ncbi_submitter: EMG


ncbi_isolation_source: isolated from culture of Pyramimonas gelidicola established from the Antarctic

ncbi_organism_name: Halopseudomonas pelagia CL-AP6

ncbi_submitter: KOPRI


ncbi_organism_name: Bacteroides faecalis

ncbi_submitter: Korean Collection for Type Culture, Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Jyvaskyla


ncbi_organism_name: Bifidobacterium aquikefiri

ncbi_submitter: Teagasc


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 24860_7

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: not available: to be reported later

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Carmel


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: BGI-Shenzhen


ncbi_country: Thailand

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: Ireland: Loughros Beag

ncbi_isolation_source: gill

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: Cefas


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Brigham Young University


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: Streptomyces europaeiscabiei

ncbi_submitter: Oregon State University


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: New Zealand: Dunedin

ncbi_isolation_source: conjugation and plant nodule

ncbi_organism_name: Mesorhizobium loti

ncbi_submitter: Curtin University


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not available

ncbi_submitter: WTSI


ncbi_submitter: Univ. Wisconsin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi;x__Salmonella enterica subsp. enterica serovar Typhi str. Ty2

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_assembly_name: freshwater MAG --- Loc081215-9m_bin-1710

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Bacillus cereus group sp. BceL187

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL187


ncbi_submitter: University of Pavia


ncbi_organism_name: Escherichia coli

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_submitter: Bursa GYKMAE


ncbi_organism_name: Rickettsia conorii subsp. raoultii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia conorii;sb__Rickettsia conorii subsp. raoultii


ncbi_organism_name: Pseudomonas syringae pv. aptata

ncbi_submitter: University of Belgrade, Faculty of Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. aptata


ncbi_organism_name: Brevibacterium sp. NPDC056947

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: Chung-Ang university


ncbi_submitter: National Institute of Health


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_organism_name: Bartonella ancashensis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Flavobacterium sp. FlaQc-49

ncbi_submitter: Universite Laval


ncbi_organism_name: Mesosutterella multiformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Streptococcus infantis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_isolate: SPRUCE 502

ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 502

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_organism_name: Streptomyces sp. NPDC017083


ncbi_organism_name: Streptomyces sp. NPDC059003


ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_organism_name: uncultured Syntrophaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Nocardia sp. NPDC057353


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: China: Quzhou

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: CAU


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: cold seep

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Candidatus Aerophobota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aerophobota;s__Candidatus Aerophobota bacterium


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Moraxellaceae bacterium


ncbi_isolate: AOP36_A1_surf _bin _2

ncbi_organism_name: Alkalibacterium gilvum

ncbi_strain_identifiers: AOP36_A1_surf _bin _2

ncbi_submitter: Genoscope


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Priestia megaterium

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Kazakhstan

ncbi_isolation_source: Nose

ncbi_strain_identifiers: ATCC BAA-39

ncbi_submitter: University of Pretoria


ncbi_submitter: addis ababa university


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chongqing Medical University


ncbi_country: Taiwan: Heaven Lake; Kaohsiung County

ncbi_isolate: fresh water

ncbi_isolation_source: fresh water

ncbi_organism_name: Derxia lacustris

ncbi_strain_identifiers: fresh water;HL-12

ncbi_submitter: Nucleus of Nitrogen Fixation


ncbi_country: Iran

ncbi_isolation_source: Wound sample

ncbi_submitter: University of Technology Sydney


ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter oleivorans

ncbi_submitter: University of Florida


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Anaerotignum sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Bacteroides congonensis


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Veillonellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Escherichia coli O104:H4

ncbi_submitter: National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute


ncbi_organism_name: Leuconostoc lactis

ncbi_submitter: Food Research Institute of National Agricultural and Food Center


ncbi_organism_name: Streptomyces sp. NBC_01190

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Lebanon

ncbi_isolation_source: Perianal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Balamand


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Rheinheimera sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_isolation_source: seafood

ncbi_organism_name: Vibrio parahaemolyticus S151

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S151


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Wound/Abscess

ncbi_organism_name: Acinetobacter variabilis

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: Australia: Thorneside Wastewater Treatment Plant

ncbi_isolation_source: flocular biomat

ncbi_organism_name: Ignavibacteria bacterium UBA2324

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__unclassified Ignavibacteria;s__Ignavibacteria bacterium UBA2324


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Achromobacter mucicolens

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Megasphaera micronuciformis


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: California

ncbi_isolation_source: rectum

ncbi_organism_name: Campylobacter lari subsp. concheus

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Clostridium sp. AF02-29

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WRAIR-Africa


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Pedobacter frigidisoli

ncbi_submitter: Branch for Bioresources of the Fraunhofer IME


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chulalongkorn University


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Escherichia albertii

ncbi_submitter: CDC


ncbi_organism_name: Streptomyces sp. NRRL F-3213

ncbi_strain_identifiers: NRRL F-3213

ncbi_submitter: University of Illinois


ncbi_organism_name: Spirillospora sp. NPDC127506

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured bacterium


ncbi_country: USA: Georgia

ncbi_isolation_source: retail store

ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: University of Georgia


ncbi_country: Ireland

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_country: China: Guizhou

ncbi_isolation_source: soil

ncbi_organism_name: Asticcacaulis tiandongensis

ncbi_submitter: State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan


ncbi_country: Belgium: Comblain-au-Pont

ncbi_isolation_source: cave

ncbi_organism_name: Streptomyces lunaelactis

ncbi_submitter: Center for Protein Engineering


ncbi_country: USA: Pittsburgh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: fecal material

ncbi_organism_name: Yersinia enterocolitica subsp. palearctica

ncbi_submitter: Uppsala university


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: concordia university


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Jeotgalicoccus halotolerans

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Pseudoxanthomonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Streptomyces sp. NPDC004538


ncbi_country: Lebanon: Beirut

ncbi_submitter: Lebanese American University


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Streptococcus lutetiensis


ncbi_isolation_source: Small intestine

ncbi_organism_name: Lactobacillus intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Thalassotalea fonticola

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Sphingomonas hankookensis

ncbi_submitter: Guangxi University


ncbi_country: Japan

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_country: China

ncbi_isolation_source: tea plantation soil

ncbi_organism_name: Paraburkholderia caffeinilytica

ncbi_submitter: School of Biological Engineering


ncbi_country: USA: MO

ncbi_organism_name: Bordetella bronchiseptica

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Germany: Muencheberg

ncbi_isolate: bin s3

ncbi_isolation_source: Plant leaves

ncbi_organism_name: Methylobacterium sp.

ncbi_strain_identifiers: bin s3

ncbi_submitter: Leibniz Centre for Agricultural Landscape Research


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: eye

ncbi_organism_name: Pseudomonas aeruginosa BL06

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: USA:Minnesota; Rochester

ncbi_isolate: CIM:MAG 755

ncbi_organism_name: Clostridiaceae bacterium

ncbi_strain_identifiers: CIM:MAG 755

ncbi_submitter: Mayo Clinic


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Tri-Service General Hospital


ncbi_country: Norway: Troms

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: University of Michigan


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Tannerella sp.

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Denmark: Ejby Moelle; Odense

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacteroidetes bacterium UBA4414

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium UBA4414


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Institute of Antibiotics


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Flavobacteriales bacterium UBA1288


ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas putida group;s__Pseudomonas fulva;x__Pseudomonas fulva NBRC 16637 = DSM 17717


ncbi_country: Czech Republic: Zofinsky prales National Nature Reserve

ncbi_isolation_source: decomposing wood from intermixed hardwood and conifers

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Czech Academy of Science


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_submitter: CNR Escherichia coli


ncbi_country: India

ncbi_isolation_source: fecal sample

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_submitter: SC


ncbi_country: China: Tibetans

ncbi_isolation_source: feces from diarrhoeal outpatients

ncbi_organism_name: Escherichia coli

ncbi_submitter: beijing


ncbi_country: Australia: Tasmania

ncbi_isolation_source: Fish hatchery

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: The University of Queensland


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Canada: Quebec

ncbi_isolation_source: Slaughterhouse-environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Tamazight Cherifi's shared submissions


ncbi_country: USA: Wyoming

ncbi_isolation_source: retail meat

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Wyoming


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_02_FULL_37_15


ncbi_country: China: Beijing

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Harvard University


ncbi_country: Japan

ncbi_organism_name: Pseudalkalibacillus berkeleyi

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Caldimonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Canada: Near Fort McMurray in northeastern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Micavibrio sp. UBA6147

ncbi_submitter: University of Queensland


ncbi_country: South Korea

ncbi_isolation_source: partially fermented kimchi

ncbi_organism_name: Weissella cibaria

ncbi_submitter: Chung-Ang university


ncbi_country: Mexico: Mexico City

ncbi_isolation_source: Blood culture from newborn

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Centro de Ciencias Genomicas UNAM


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: Concentrated milk from the processing line of powdered infant formula

ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: Korea University


ncbi_organism_name: Streptomyces sp. IBSBF 3136

ncbi_strain_identifiers: IBSBF 3136

ncbi_submitter: UFSCar


ncbi_organism_name: Acetobacter sp.

ncbi_submitter: Teagasc


ncbi_strain_identifiers: Alboraia

ncbi_submitter: University of Valencia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Blattabacteriaceae;g__Blattabacterium;x__unclassified Blattabacterium;s__Blattabacterium sp. (Blattella germanica);x__Blattabacterium sp. (Blattella germanica) str. Bge


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: digestive tract (UBERON:0001555); intestine (UBERON:0000160)

ncbi_organism_name: Hungatella sp. UBA3402


ncbi_isolation_source: Factory - Bale store

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Surrey


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Egypt: Borg AlArab City; Alexandria Governorate

ncbi_isolation_source: industrial waste water

ncbi_organism_name: Raoultella planticola

ncbi_submitter: Faculty of Agriculture, Cairo University


ncbi_country: Sweden

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 3490-1

ncbi_submitter: Broad Institute


ncbi_country: France

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Citrobacter sp. HSTU-ABk15

ncbi_submitter: Hajee Mohammad Danesh Science and Technology University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_country: Nepal: Gokarna

ncbi_isolation_source: Wild animal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Leibniz Institute of Photonic Technology (IPHT)


ncbi_isolation_source: Infant feces

ncbi_organism_name: Bifidobacterium sp. FKU

ncbi_strain_identifiers: FKU

ncbi_submitter: Nankai University


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Morganella morganii

ncbi_submitter: Agroscope


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: US Food and Drug Administration


ncbi_country: Canada: Ontario

ncbi_isolation_source: neck wound from dog bite

ncbi_organism_name: Vandammella animalimorsus

ncbi_submitter: National Microbiology Laboratory/ Public Health Agency of Canada


ncbi_country: Turkey

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_strain_identifiers: SiuDiyapA

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Jannaschia sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: National Health Research Institutes


ncbi_country: Haiti

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae HC-55B2

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: rumen fluid of Korean native cattle

ncbi_organism_name: Bordetella trematum

ncbi_submitter: KRIBB


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Verrucomicrobiales bacterium


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: uncultured Sphingomonadaceae bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces of yak

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: USA

ncbi_organism_name: Coprococcus comes

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Sputum

ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus sp. SBS7

ncbi_submitter: University of Texas at Dallas

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. SBS7


ncbi_country: USA: Pittsburgh; PA

ncbi_organism_name: Mycolicibacterium smegmatis

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_country: South Korea: Sangju-si; Nakdong River

ncbi_isolation_source: freshwater

ncbi_organism_name: Kinneretia aquatilis

ncbi_submitter: Nakdonggang National Institute of Biological Resources


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: mushroom substrate

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Beijing Academy of Agricultural And Forestry Sciences


ncbi_organism_name: uncultured Erythrobacteraceae bacterium


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: China: Zhejiang

ncbi_isolation_source: Chicken Droppings

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: USA: Hawaii

ncbi_isolation_source: Taro

ncbi_organism_name: Dickeya zeae

ncbi_submitter: University of Hawaii at Manoa


ncbi_organism_name: Microvirgula aerodenitrificans

ncbi_submitter: Indian Institute of Technology


ncbi_country: China: Yangzhou

ncbi_isolation_source: food

ncbi_organism_name: Empedobacter brevis

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Micavibrio sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Egypt

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: bioMerieux


ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhizobium sp. Q54

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: West China Hospital, Sichuan University


ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Japan

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Meijo University faculty of pharmacy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_strain_identifiers: WHRI 8301

ncbi_submitter: The Xanthomonas Threats project


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Anaerosacchariphilus sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: chicken feces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: ETH Zurich


ncbi_country: France: Lyon

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Pseudomonas viciae

ncbi_submitter: University of Waterloo


ncbi_isolation_source: stool

ncbi_submitter: CDC


ncbi_organism_name: Bradyrhizobium sp. BWC-3-1

ncbi_submitter: I2BC CNRS


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: USA: New York; Buffalo

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus oralis subsp. tigurinus

ncbi_submitter: University at Buffalo


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Yangzhou University


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: China:Yunnan province

ncbi_isolation_source: lung

ncbi_organism_name: Moraxella nasovis

ncbi_submitter: Yunnan Animal Science and Veterinary Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Ferrithrix thermotolerans DSM 19514

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: The University of Queensland


ncbi_organism_name: uncultured Thermotogae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;x__environmental samples;s__uncultured Thermotogae bacterium


ncbi_organism_name: uncultured Nitrospiraceae bacterium


ncbi_organism_name: uncultured Rubellimicrobium sp.


ncbi_organism_name: uncultured Microthrixaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Tessaracoccus lubricantis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Terada and Riya Laboratory, Chemical Engineering, Depertment of Technology, Tokyo University of Agriculture and Technology


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: uncultured Enterobacterales bacterium


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolate: AOP9_I1_surf _bin _18

ncbi_organism_name: Marinomonas sp.

ncbi_strain_identifiers: AOP9_I1_surf _bin _18

ncbi_submitter: Genoscope


ncbi_submitter: Pushchino Scientific Center of Biological Research of the Russian Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Burkholderiales bacterium


ncbi_organism_name: Aeromonas bivalvium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Liquorilactobacillus satsumensis

ncbi_submitter: Teagasc


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Marques de Valdecilla University Hospital


ncbi_organism_name: Curtobacterium sp. LFS084

ncbi_submitter: Rutgers University


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Argonne National Laboratory


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- MJ_bin-2035

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: Canada: Lacombe

ncbi_organism_name: Mollicutes bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Huainan Normal University


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangdong

ncbi_isolation_source: Gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Micrococcus sp. NPDC078436

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Hellea sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: South Korea: Seoul

ncbi_organism_name: bacterium

ncbi_submitter: Yonsei University


ncbi_country: Germany

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: NIZO food research


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Fimbriimonadales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Bangabandhu Sheikh Mujibur Rahman Agricultural University


ncbi_organism_name: Streptomyces sp. NPDC006170


ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Pseudomonas sp. QL9

ncbi_submitter: South China Agricultural University


ncbi_country: Germany: Kiel

ncbi_isolation_source: Rotting apple

ncbi_organism_name: Ochrobactrum sp. MYb49

ncbi_submitter: Zoological Institute, Kiel University


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: SC


ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: Northern Arizona University


ncbi_country: USA: California

ncbi_isolation_source: Cerebrospinal fluid from patient with neonatal meningitis

ncbi_organism_name: Escherichia coli RS218

ncbi_submitter: University of Oklahoma Health Sciences Center


ncbi_country: Mexico: Culiacan; Sinaloa

ncbi_isolation_source: river water

ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: U.S. Department of Agriculture-Agricultural Research Service


ncbi_strain_identifiers: M 3


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: sea water

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Greece: Epirus

ncbi_isolation_source: artisanal Greek Feta cheese

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: Italy: Torino

ncbi_isolation_source: Mozzarella

ncbi_organism_name: Pseudomonas simiae

ncbi_submitter: Universita di Torino


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: CIISA - Centre of Interdisciplinary Research in Animal Health, Faculty of Veterinary Medicine, Unive


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: Denmark: Kalundborg

ncbi_isolation_source: wastewater

ncbi_organism_name: Pseudomonas defluvii

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: uncultured Angelakisella sp.


ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: not provided

ncbi_organism_name: Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: USA: San Diego; Bird Rock

ncbi_isolation_source: Intertidal boulder

ncbi_organism_name: Pseudoalteromonas sp. MMG007

ncbi_submitter: San Diego State University


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Universite de Montreal


ncbi_country: Germany: Cologne

ncbi_organism_name: Frateuria sp. Soil773

ncbi_submitter: ETH Zurich


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Ontario

ncbi_isolation_source: dairy cattle manure digester

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: JPIAMR ARMIS


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_submitter: University of Toronto


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: Caecum


ncbi_country: Thailand: Bangkok

ncbi_organism_name: Paracoccus versutus

ncbi_strain_identifiers: MAL 1HM19

ncbi_submitter: Abace


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Thalassolituus sp.


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: University Hospital Muenster


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Walczuchella;x__unclassified Candidatus Walczuchella;s__Candidatus Walczuchella endosymbiont of Icerya purchasi


ncbi_country: Germany

ncbi_isolation_source: Poultry Meat (Wings)

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The German Federal Institute of Risk Assessment (BfR)


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B055;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Italy: Sicily

ncbi_isolation_source: whole DNA extracted from Ceratitis capitata line Ccap10.3 adult female

ncbi_organism_name: Wolbachia endosymbiont of Ceratitis capitata

ncbi_submitter: Western Sydney University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_country: China

ncbi_isolation_source: river water

ncbi_organism_name: Duganella vulcania

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: Limnobacter sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Bahamas: San Salvador

ncbi_isolation_source: Aplysina fistularis

ncbi_organism_name: Xanthovirga aplysinae

ncbi_submitter: UPEI


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_submitter: Public Health Laboratory


ncbi_country: Norway: Viken

ncbi_isolation_source: feces

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Paenibacillus lutimineralis

ncbi_strain_identifiers: MER 36

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_country: South Korea

ncbi_isolation_source: raw rice wine

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Shin's Lab., Kyungpook National University


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_isolation_source: Sea Water

ncbi_organism_name: Cytophagales bacterium Alg240-R148

ncbi_submitter: Elham Karimi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;x__unclassified Cytophagales;s__Cytophagales bacterium Alg240-R148


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Subdoligranulum sp. 4_3_54A2FAA

ncbi_submitter: Broad Institute


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Gammaproteobacteria bacterium UBA855

ncbi_submitter: University of Queensland