ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_genome_representation: full

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Institute of Food Science and Biotechnology


ncbi_assembly_level: Contig

ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University of Pittsburgh


ncbi_assembly_level: Scaffold

ncbi_country: Australia: Great Barrier Reef

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


gtdb_representative: t

ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Bacteroides caccae CL03T12C61

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Pseudogulbenkiania ferrooxidans 2002

ncbi_refseq_category: reference genome

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: China: Huainan

ncbi_isolation_source: coal samples cultured in anaerobic conditions in minimal salts plus yeast media

ncbi_organism_name: Staphylococcaceae bacterium

ncbi_submitter: Anhui University of Science & Technology


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sphingobacterium multivorum


ncbi_isolation_source: human skin

ncbi_organism_name: Varibaculum cambriense

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sichuan University


ncbi_organism_name: Acetomicrobium sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: USA: Virginia

ncbi_isolation_source: Precipitation

ncbi_organism_name: Pantoea eucalypti

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Kenya: Nairobi

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Makerere University


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


gtdb_type_species_of_genus: t

ncbi_organism_name: Pacificibacter maritimus

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Peru

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Cyclobacteriaceae bacterium


ncbi_country: Czech Republic: Jilove u Prahy

ncbi_organism_name: Enterobacteriaceae bacterium Larv1_ips

ncbi_submitter: Institute of Microbiology, CAS


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Fusicatenibacter sp.

ncbi_submitter: Biomin Research Center


ncbi_organism_name: Gaetbulibacter jejuensis

ncbi_submitter: Third Institute of Oceanography


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Chlorobium chlorochromatii

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Butyricicoccus sp.


ncbi_country: Australia

ncbi_isolation_source: feces

ncbi_submitter: CSIRO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a a 3.0 um filter and then through a 0.2 um filter

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Beckwithiibacteriota;s__Candidatus Beckwithbacteria bacterium CG1_02_47_37


ncbi_country: Colombia: Cauca

ncbi_isolation_source: Leg secretion

ncbi_organism_name: Escherichia coli

ncbi_submitter: International Center for Microbial Genomics - Universidad El Bosque


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Oribacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: myocardial abscess

ncbi_organism_name: Listeria monocytogenes 07PF0776

ncbi_submitter: University of Illinois at Chicago


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Carcass Rinsate

ncbi_organism_name: Staphylococcus condimenti

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Bern


ncbi_country: USA: Delaware; Wilmington

ncbi_isolation_source: tissue

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Delaware Public Health Lab


ncbi_organism_name: Allorhizobium ampelinum

ncbi_submitter: Oregon State University


ncbi_organism_name: uncultured Polyangiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: India

ncbi_organism_name: Paramicrobacterium agarici

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Thioclava sp. GXIMD4216

ncbi_submitter: Guangxi University of Chinese Medicine


ncbi_isolation_source: Symbiodiniaceae culture

ncbi_organism_name: Allomuricauda sp. MMSF_3543

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Poamoho; Hawaii

ncbi_isolation_source: biochar-amended oxisol soil plot 3

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Arizona State University


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA

ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: University of Texas at Austin


ncbi_organism_name: Prevotella sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Vienna


ncbi_country: China: Guangxi

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Shigella flexneri K-1770

ncbi_submitter: Institute for Genome Sciences


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens


ncbi_country: China: Jiangsu

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: Bradyrhizobium roseum

ncbi_submitter: Nanjing Forestry University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: Water column

ncbi_organism_name: Candidatus Puniceispirillum sp.

ncbi_submitter: Handley Lab, University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;g__Candidatus Puniceispirillum;x__unclassified Candidatus Puniceispirillum;s__Candidatus Puniceispirillum sp.


ncbi_country: Taiwan

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Zhejiang University School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: marine sediment

ncbi_organism_name: Sediminihaliea albiluteola

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_country: Finland: Olkiluoto

ncbi_isolate: bin S2.17

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_strain_identifiers: bin S2.17

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: animal

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_country: France

ncbi_isolation_source: dairy product

ncbi_submitter: Anses


ncbi_country: Pakistan

ncbi_submitter: University of Maryland, School of Medicine


ncbi_assembly_name: Denovo assembly

ncbi_isolation_source: placental fluid of aborted goat

ncbi_organism_name: Brucella melitensis ADMAS-G1

ncbi_submitter: Madurai Kamaraj University


ncbi_assembly_name: GEN_BGC Atlantic-Pacific 2011 bin.584 MAG

ncbi_isolate: bin.584 MAG

ncbi_isolation_source: North Pacific

ncbi_organism_name: Rhodobiaceae bacterium UBA7378

ncbi_strain_identifiers: bin.584 MAG

ncbi_submitter: IDAEA-CSIC


ncbi_isolation_source: rhizosphere soil culture M58

ncbi_organism_name: Arthrobacter sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Germany

ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: bioMerieux


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Chicken eggshell surface

ncbi_organism_name: Turicibacter bilis

ncbi_submitter: USDA ARS


ncbi_isolation_source: not available: to be reported later

ncbi_submitter: SC


ncbi_submitter: Linnaeus University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Faculty of Medicine Siriraj Hospital


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: Staphylococcus pseudoxylosus


ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Chloracidobacterium sp.

ncbi_submitter: EPFL


ncbi_country: Denmark: Haderslev

ncbi_isolation_source: activated sludge from Hade_18-Q3-R52-61

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_submitter: University of Oxford


ncbi_assembly_name: freshwater MAG --- A2_bin-0146

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Chryseobacterium indologenes


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_country: Pakistan: Peshawar

ncbi_isolation_source: Nasobronchial lavage

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Umea University


ncbi_organism_name: Salmonella sp. 741265053_HBA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Gilvibacter sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: California

ncbi_isolation_source: Advanced Water Purification Facility

ncbi_organism_name: Mycolicibacterium mageritense

ncbi_submitter: Colorado School of Mines


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: Russia: Samara

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: China: Shantou; Guangdong

ncbi_isolation_source: marine

ncbi_organism_name: Seohaeicola sp. 4SK31

ncbi_submitter: Shantou University


ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Minnesota

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Kansas State University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Italy

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_country: Australia

ncbi_isolation_source: rectal swab

ncbi_submitter: University of Melbourne


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: wound abdominal

ncbi_organism_name: Staphylococcus sp. HMSC058E01

ncbi_submitter: The Genome Institute at Washington University


ncbi_assembly_level: Chromosome

ncbi_country: Canada: Vernon; BC. Kalamalka Seed Orch

ncbi_organism_name: Candidatus Hartigia pinicola

ncbi_submitter: University of Georgia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Hartigia;s__Candidatus Hartigia pinicola


ncbi_country: Pacific Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: Technical University of Denmark


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China

ncbi_submitter: Southwest Medical University


ncbi_isolation_source: Faeces


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Lactobacillus kitasatonis

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Japan: Zentsuji; Kagawa Prefecture

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: University of Tuebingen


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Escherichia coli

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Flexilinea sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Spirillospora sp. NPDC049024

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_organism_name: Stenotrophomonas sepilia

ncbi_submitter: University of Technology Sydney


ncbi_country: Israel: Achziv nature marine reserve

ncbi_organism_name: Aphanocapsa feldmannii 288cV

ncbi_submitter: University of Haifa


ncbi_country: USA: PA

ncbi_isolation_source: intestine mouse (Mus musculus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_organism_name: Bifidobacterium actinocoloniiforme DSM 22766

ncbi_submitter: Key Laboratory of Dairy BiotecInner Mongolia Agricultural University


ncbi_submitter: Institute of Basic Science


ncbi_country: Pakistan: Punjab

ncbi_isolation_source: infection

ncbi_submitter: Washington University


ncbi_country: China: Henan

ncbi_isolation_source: liver

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Zhejiang University


ncbi_country: Brazil

ncbi_isolation_source: Feces

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: UZ Brussel


ncbi_organism_name: Helicobacter pylori oki102

ncbi_submitter: Okinawa Institute of Advanced Sciences


ncbi_organism_name: Capnocytophaga ochracea

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_country: China: Shandong

ncbi_isolation_source: Daqu

ncbi_organism_name: Thermoactinomyces sp. CICC 24227

ncbi_submitter: China National Research Institute of Food and Fermentation Industries


ncbi_organism_name: Castellaniella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Nanjing University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Enterobacter cloacae complex sp. IR5441

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. IR5441


ncbi_organism_name: Yersinia pestis

ncbi_submitter: LLP "National Scientific Center of Especially Dangerous Infections named after Masgut Aikimbayev"


ncbi_organism_name: Flavipsychrobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Actinomyces sp.


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Chiang Mai University


ncbi_organism_name: Rhodococcus pyridinivorans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Salmonella sp. NW245

ncbi_submitter: Sichuan University


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Arenimonas sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Mycolicibacterium nivoides


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Computational Biology and Microbial Ecology


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chungbuk National University


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Thiotrichales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China:Hubei; Anlu

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Nocardia arthritidis NBRC 100137

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: Oral

ncbi_organism_name: Fusobacterium nucleatum

ncbi_strain_identifiers: FNA

ncbi_submitter: Shandong University


ncbi_isolation_source: Riverbed sediment

ncbi_organism_name: Variovorax sp. RA8

ncbi_submitter: LEIBNIZ INSTITUTE FOR BALTIC SEA RESEARCH


ncbi_organism_name: Massilia aurea

ncbi_submitter: University of Tuebingen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;x__unclassified Candidatus Margulisiibacteriota;s__Candidatus Margulisiibacteriota bacterium


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Aeribacillus sp. FSL M8-0235

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Aeribacillus;x__unclassified Aeribacillus;s__Aeribacillus sp. FSL M8-0235


ncbi_assembly_name: freshwater MAG --- MJ110712A_bin-019

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: India: Karnataka

ncbi_isolation_source: Human community

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Canada: Quebec

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_submitter: Huzhou cdc


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EBI


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Bifidobacterium pseudolongum

ncbi_submitter: EMG


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Indonesia: Java

ncbi_isolation_source: environmental

ncbi_organism_name: Yersinia pestis

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Neisseria sp.


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA: AR

ncbi_isolation_source: soil

ncbi_organism_name: Listeria innocua

ncbi_submitter: Cornell University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;s__Candidatus Nealsonbacteria bacterium CG07_land_8_20_14_0_80_40_10


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Comamonas aquatica


ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Veillonella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: northeast

ncbi_isolation_source: Pasteurized milk

ncbi_organism_name: Pseudomonas sp. FSL A6-1183


ncbi_country: Spain: Cadiz

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Virgen Macarena


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Hungary: Budapest

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Corynebacterium propinquum

ncbi_submitter: Semmelweis University


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Marivita cryptomonadis

ncbi_submitter: Shantou University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Coprococcus comes

ncbi_submitter: EMG


ncbi_organism_name: Lacrimispora sphenoides

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 3 / C; 5m depth; 0.2 filter

ncbi_organism_name: Chloroflexi bacterium GWC2_73_18

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__unclassified Chloroflexota;s__Chloroflexi bacterium GWC2_73_18


ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_country: New Zealand

ncbi_organism_name: Chlamydia psittaci

ncbi_submitter: University of the Sunshine Coast


ncbi_country: India: Pune

ncbi_isolation_source: Commercial Digestive Syrup

ncbi_organism_name: Niallia alba

ncbi_submitter: National Centre for Cell Science


ncbi_organism_name: Halomonas sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: Canada: Guelph

ncbi_isolation_source: Swine manure pit

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Haemophilus pittmaniae

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: freshwater MAG --- E-1_bin-309

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_assembly_name: Campylobacter jejuni CVM 41946 v1.0

ncbi_country: USA

ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter jejuni CVM 41946

ncbi_submitter: FDA/CVM


ncbi_country: Italy

ncbi_isolation_source: feces

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: AAT Srl - Advanced Analytical Technologies


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_country: United Kingdom: Somerset

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: India

ncbi_isolation_source: intestine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Persicirhabdus sediminis

ncbi_submitter: Shandong university


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-424-A14

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Brevibacillus porteri

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Japan:Kagoshima; Forest at Amami Island

ncbi_isolation_source: Soil

ncbi_organism_name: Planotetraspora silvatica

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_country: Brazil

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Canada: Quebec; Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Seonamhaeicola maritimus

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Anaerococcus prevotii ACS-065-V-Col13

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Universidad de Zaragoza, Facultad de Veterinaria


ncbi_country: Indian Ocean: Southwest Indian Ridge

ncbi_isolation_source: marine sediments

ncbi_organism_name: Virgibacillus profundi

ncbi_submitter: Institute of Microbiology, CAS


ncbi_country: Turkey: Digor

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Bundeswehr, Institute of Microbiology


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella sp. 2021_888

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_country: China: Weifang

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Escherichia coli O121:H19 str. 06-3003

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O121:H19;x__Escherichia coli O121:H19 str. 06-3003


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Cambodia

ncbi_organism_name: Mycobacterium sp. E3247

ncbi_submitter: JCVI


ncbi_country: Saudi Arabia: Riyadh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University College Dublin


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_country: China: Zhejiang

ncbi_isolation_source: Urine culture

ncbi_organism_name: Escherichia coli


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Lentimicrobium sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_country: China: Beijing

ncbi_isolation_source: digestive tract

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_strain_identifiers: CVCC 3378

ncbi_submitter: Dalian University of Technology


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: animal manure

ncbi_submitter: The James Hutton Institute


ncbi_organism_name: Photobacterium profundum SS9

ncbi_submitter: University of Padova, Italy


ncbi_organism_name: Burkholderiaceae bacterium


ncbi_organism_name: Terrimicrobiaceae bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: East

ncbi_isolation_source: Screening

ncbi_submitter: UK Health Security Agency


ncbi_country: Antarctica: Mitchell Peninsula

ncbi_organism_name: Novosphingobium sp. NBM11

ncbi_submitter: University of New South Wales


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Brazil: Sao Paulo -SP

ncbi_isolation_source: bloodstream

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: LNCC


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella pallens

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale


ncbi_country: USA:California;San Joaquin Valley

ncbi_isolation_source: Groundwater from a diary farm

ncbi_organism_name: Candidatus Brocadiales bacterium

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;x__unclassified Candidatus Brocadiales;s__Candidatus Brocadiales bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: lung

ncbi_submitter: University of Oxford


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: USA: Massachusetts

ncbi_isolation_source: cloacal

ncbi_organism_name: Enterococcus hulanensis

ncbi_submitter: Broad Institute


ncbi_country: Brazil: Para

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Federal University of Para


ncbi_organism_name: Paraprevotella clara

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: chest wound

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Belgium

ncbi_isolation_source: urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus


ncbi_organism_name: Streptomyces sp. CGMCC 4.1456

ncbi_submitter: Hunan University of Arts and Science


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Salmonella enterica subsp. houtenae


ncbi_isolation_source: tomato fruit

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: The Ohio State University


ncbi_isolation_source: Human feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Enterococcus sp. HMSC072H05

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Paraconexibacter sp. AEG42_29

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Aeromonas allosaccharophila

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lesion

ncbi_submitter: University of Tennessee


ncbi_organism_name: uncultured archaeon

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Mogibacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: USA: Ohio

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_isolation_source: sea water

ncbi_organism_name: Candidatus Pseudothioglobus singularis

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Pseudothioglobus;s__Candidatus Pseudothioglobus singularis


ncbi_isolation_source: microbes were collected at JL-Dive96-S01

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: EMG


ncbi_isolation_source: faeces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Quadram Bioscience Institute


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Rhodanobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Feces

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Florida


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Mycobacterium simiae

ncbi_submitter: Department of Infection Metagenomics, Osaka University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnoclostridium sp.


ncbi_country: USA: Boston; MA

ncbi_isolation_source: ICU

ncbi_organism_name: Staphylococcus aureus M0171

ncbi_submitter: Broad Institute


ncbi_country: China: Hangzhou

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Spain

ncbi_isolation_source: water

ncbi_organism_name: Salinivibrio sp. MA440

ncbi_submitter: Universidad de Sevilla


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Erciyes University


ncbi_country: Germany

ncbi_isolate: DcraSym

ncbi_isolation_source: Beetle Malpighian tubules

ncbi_organism_name: Enterobacteriaceae endosymbiont of Donacia crassipes

ncbi_strain_identifiers: DcraSym

ncbi_submitter: Johannes Gutenberg University Mainz


ncbi_country: Germany: Constance

ncbi_isolation_source: laboratory mutant

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of Muenster


ncbi_organism_name: Thalassobaculum sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Balneola sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Candidatus Hydrogenedens sp.

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy: d__Bacteria;p__Candidatus Hydrogenedentota;c__Candidatus Hydrogenedentia;o__Candidatus Hydrogenedentales;f__Candidatus Hydrogenedentaceae;g__Candidatus Hydrogenedens;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;c__Candidatus Hydrogenedentia;o__Candidatus Hydrogenedentales;f__Candidatus Hydrogenedentaceae;g__Candidatus Hydrogenedens;x__unclassified Candidatus Hydrogenedens;s__Candidatus Hydrogenedens sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wyoming


ncbi_isolation_source: beef

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nankai University


ncbi_organism_name: Escherichia coli E1167


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alteromonas sp. UBA2493

ncbi_submitter: University of Queensland


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: metagenome

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Flemingiibacterium;s__Candidatus Flemingiibacterium merdigallinarum


ncbi_country: France: Normandy

ncbi_isolation_source: ear

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: urine

ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Chile: Laguna Lejia

ncbi_isolation_source: Salted water

ncbi_organism_name: Marinobacter sp. ATCH36

ncbi_submitter: Helmholtz Zentrum Dresden-Rossendorf


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Florida


ncbi_country: China: Jiangsu

ncbi_isolation_source: gallbladder

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou university


ncbi_organism_name: Proteiniphilum sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Propionibacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: pork

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan Hospital of Fudan University


ncbi_country: USA: FL

ncbi_organism_name: Escherichia coli


ncbi_country: India: Uttar Pradesh; Varanasi; Naipura Khurd

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: human gut

ncbi_organism_name: Roseburia intestinalis


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Functional Genomics Lyon (IGFL)


ncbi_country: Italy

ncbi_isolation_source: Milk and dairy products

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_organism_name: Streptomyces stelliscabiei

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_submitter: China-Japan Friendship Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_organism_name: Alistipes communis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: McGill University


ncbi_organism_name: Phocaeicola dorei


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: Pseudoalteromonas sp. T1lg65

ncbi_submitter: zhejiang university of technology


ncbi_organism_name: Candidatus Methylopumilus universalis

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Johns Hopkins Applied Physics Lab


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Global Health Research Unit


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Bacillus cereus group sp. BceL192

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL192


ncbi_country: China: Maanshan Magnetite Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China: Dajiu Lake

ncbi_isolation_source: sediments

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: San Diego Bay; CA

ncbi_isolation_source: swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Devosia sp.


ncbi_submitter: Thammasat University


ncbi_organism_name: Paraprevotella xylaniphila


ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Toho university


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidales bacterium


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malawi: Lilongwe

ncbi_isolation_source: pus

ncbi_organism_name: Escherichia coli

ncbi_submitter: NORHED grant


ncbi_organism_name: Streptococcus agalactiae GB00897

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Pseudomonas fulva


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: bacterium TMED198

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lachnospirales bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: candidate division TA06 bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__candidate division TA06;s__candidate division TA06 bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Third People's Hospital of Shenzhen


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Norway: Bergen

ncbi_isolation_source: Sewage

ncbi_submitter: Institute of Marine Research


ncbi_organism_name: Candidatus Sericytochromatia bacterium

ncbi_submitter: McGill University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;c__Candidatus Sericytochromatia;x__unclassified Candidatus Sericytochromatia;s__Candidatus Sericytochromatia bacterium


ncbi_country: Taiwan

ncbi_isolation_source: stool

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_country: China

ncbi_isolation_source: plants of commercial interest

ncbi_organism_name: Bacillus sp. IGA-FME-2

ncbi_submitter: Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. IGA-FME-2


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Antarctica

ncbi_isolation_source: near the Indian station Dakshin Gangotri

ncbi_organism_name: Paeniglutamicibacter gangotriensis Lz1y

ncbi_submitter: Centre for Cellular and Molecular Biology


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_organism_name: Salmonella enterica

ncbi_submitter: South Dakota State University


ncbi_country: Spain: Asturias

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: Megasphaera elsdenii

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Clostridium perfringens


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Germany: Braunschweig

ncbi_strain_identifiers: FDAARGOS 1434

ncbi_submitter: US Food and Drug Administration


ncbi_assembly_name: Rumen uncultured genome RUG12120

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Texas A&M University


ncbi_isolation_source: Skin


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Prevotella sp. UBA6429

ncbi_submitter: University of Queensland


ncbi_country: China: Beijing

ncbi_isolation_source: desert sand

ncbi_organism_name: Blastococcus saxobsidens

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 297


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Holdemanella biformis

ncbi_submitter: University of Chicago


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Intestinibacter bartlettii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. B1-1-8

ncbi_submitter: Curtin University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium GW2011_GWA2_40_97


ncbi_country: China: Xiamen

ncbi_isolation_source: the kelp Laminaria japonica

ncbi_organism_name: Microbulbifer sp. ALW1

ncbi_submitter: Jimei University


ncbi_country: USA: VA

ncbi_isolation_source: creek water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: USA: Bethesda

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: Escherichia coli

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Erythrobacteraceae bacterium UBA3164


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus OCMM6047

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_country: Czech Republic: Praha

ncbi_submitter: University of Veterinary Sciences


ncbi_country: France: Champenoux

ncbi_organism_name: Paraburkholderia madseniana

ncbi_submitter: FARE INRA


ncbi_country: Malaysia: Universiti Kebangsaan Malaysia Medical Center

ncbi_isolation_source: tracheal aspirate from an ICU patient

ncbi_organism_name: Staphylococcus aureus PPUKM-377-2009

ncbi_submitter: UKM Medical Centre


ncbi_country: China: Qinghai province

ncbi_isolation_source: intestinal content

ncbi_organism_name: Agromyces badenianii

ncbi_submitter: Chinese center for disease control and prevention


ncbi_isolation_source: porcine tonsil microbiota

ncbi_organism_name: Rothia nasimurium

ncbi_submitter: Wageningen University and Research


ncbi_country: China: Xinjiang

ncbi_organism_name: Vreelandella populi

ncbi_strain_identifiers: RC

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_isolation_source: not available: not collected

ncbi_organism_name: Salmonella enterica subsp. diarizonae

ncbi_submitter: SC


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_isolation_source: marine

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University of Queensland


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Thiotrichales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: South Korea: Gyeonggi-do; Suwon-si

ncbi_isolation_source: air

ncbi_organism_name: Hymenobacter sublimis

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_country: United Kingdom

ncbi_isolation_source: food (the mackerel and mussels in the garlic butter sauce)

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Chiang Mai University


ncbi_organism_name: Acinetobacter vivianii

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Post Graduate Institute of Medical Education and Research, Chandigarh


ncbi_country: Austria: pond Trog7

ncbi_isolation_source: freshwater

ncbi_organism_name: Polynucleobacter paneuropaeus

ncbi_submitter: University of Innsbruck


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: dairy goats with persistent mastitis before therapy with enrofloxacin

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: UFMG


ncbi_organism_name: Eggerthella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: France: Normandy

ncbi_isolation_source: sink trap

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_country: Belgium

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liege


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Fifth Affiliated Hospital, Southern Medical University


ncbi_country: Japan

ncbi_isolation_source: honey

ncbi_organism_name: Paenibacillus macerans

ncbi_submitter: National Agriculture and Food Research Organization


ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: University of Trento


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Chongqing Medical University


ncbi_isolation_source: blood

ncbi_organism_name: Bordetella holmesii 70147

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Prosthecobacter sp.

ncbi_submitter: The University Hong Kong


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: ceaca

ncbi_organism_name: Enterococcus casseliflavus

ncbi_strain_identifiers: P9 C A21

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: South Korea: Changwon

ncbi_isolation_source: human skin swab

ncbi_organism_name: Kocuria marina subsp. indica

ncbi_submitter: Changwon National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Kocuria;s__Kocuria marina;sb__Kocuria marina subsp. indica


ncbi_country: China: Zhejiang

ncbi_isolation_source: Ward

ncbi_submitter: the First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Monash University


ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_organism_name: Vibrio coralliilyticus ATCC BAA-450

ncbi_strain_identifiers: ATCC BAA-450

ncbi_submitter: Los Alamos National Laboratory (LANL), National Microbial Pathogen Data Resource (NMPDR)


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EMG


ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Hiroshima University


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Chinese PLA General Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: not available: to be reported later


ncbi_assembly_name: Rumen uncultured genome RUG10771

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Alkalicoccobacillus plakortidis

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Weeksellaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Nocardia ignorata

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: SCOPE


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Anaerovibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: University of Michigan Medical School


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Rhabdochlamydiaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: USA: MA

ncbi_submitter: FDA/CFSAN


ncbi_country: New Zealand: Wai-iti river; Nelson

ncbi_isolation_source: freshwater Microcoleus biofilm

ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: University of Auckland


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: uncultured Ferruginibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Spain: Palma de Mallorca

ncbi_isolation_source: Colon biopsy

ncbi_submitter: Universidad de Chile


ncbi_country: USA: Washington

ncbi_isolation_source: oyster sample

ncbi_organism_name: Vibrio parahaemolyticus 846

ncbi_submitter: NOAA Northwest Fisheries Science Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus 846


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Pacificitalea manganoxidans

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Asticcacaulis sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: freshwater MAG --- Umea3p3_bin-1231

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Mucilaginibacter sp.

ncbi_submitter: BILS


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ren Ji Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: USA: VA

ncbi_isolation_source: water gallon

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: Indian Ocean

ncbi_isolation_source: Sulfide

ncbi_organism_name: Aurantimonas coralicida

ncbi_submitter: Third Institute of Oceanography,National Oceanic Adminisstration


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: European Institute of the Sea (IUEM) - France


ncbi_isolation_source: xylene contaminated groundwater

ncbi_organism_name: Ferrovibrio sp.

ncbi_submitter: Duisburg-Essen University


ncbi_assembly_name: freshwater MAG --- Loc090402-1m_bin-0608


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_submitter: SC


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: China: Wumeng Prairie; Liupanshui City; Guizhou Province

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus siamensis

ncbi_submitter: COLLEGE OF AGRICULTURE.GUIZHOU UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus siamensis


ncbi_country: South Africa: Tau Tona mine in Carletonville district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Thermus oshimai

ncbi_submitter: University Duisburg-Essen


ncbi_country: India

ncbi_isolation_source: raw shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_country: China: South; Zhanjiang Port

ncbi_isolation_source: gastrointesinal

ncbi_organism_name: Paracoccus siganidrum

ncbi_submitter: China Agricultural University


ncbi_organism_name: Desulfovibrio sp. SGI.133

ncbi_submitter: University of Manitoba


ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Christensenella sp. UBA6420

ncbi_submitter: University of Queensland


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis KT-0006

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: household surface

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Cryptosporangium japonicum

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Holdemanella biformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_submitter: University of New Hampshire


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus canis

ncbi_submitter: Laboratory of Infectious Diseases, Kitasato Institute for Life Sciences, Kitasato University


ncbi_assembly_name: Bacillus licheniformis strain F1-1

ncbi_country: Australia: Victoria

ncbi_isolation_source: concentrated milk

ncbi_organism_name: Bacillus licheniformis F1-1

ncbi_submitter: The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus licheniformis;x__Bacillus licheniformis F1-1


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Alachua


ncbi_country: Switzerland: Solothurn

ncbi_isolation_source: autopsy

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_organism_name: Rickettsia parkeri str. Tate's Hell

ncbi_strain_identifiers: Tate's Hell

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia parkeri;x__Rickettsia parkeri str. Tate's Hell


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Canada

ncbi_organism_name: Vibrio sp. J383

ncbi_submitter: Memorial University Of Newfoundland


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Sphingobium sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: USA: California

ncbi_isolation_source: oropharyngeal swab

ncbi_organism_name: Mycoplasma enhydrae

ncbi_submitter: US FDA


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Children's Hospital of Fudan University


ncbi_country: China: Hubei

ncbi_isolation_source: Rice wine Koji

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Wolbachia endosymbiont of Drosophila melanogaster

ncbi_strain_identifiers: wMel

ncbi_submitter: TIGR


ncbi_organism_name: Fluviicoccus sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: New York City

ncbi_isolation_source: tracheal aspirate

ncbi_submitter: Columbia University Medical Center


ncbi_country: Australia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Technology, Sydney


ncbi_country: Antarctica

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudoalteromonas sp. Z9A6

ncbi_submitter: Shandong University


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Priestia megaterium

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: CDC of Sichuan Province


ncbi_organism_name: Fusobacterium necrophorum subsp. funduliforme

ncbi_submitter: University Hospital Center and University of Lausanne


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Salibacteraceae bacterium

ncbi_submitter: University of East Anglia


ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Sphingobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Leuconostoc falkenbergense

ncbi_submitter: Teagasc


ncbi_organism_name: Acinetobacter baumannii


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: ANSES


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JPIAMR ARMIS


ncbi_organism_name: Clavibacter sepedonicus

ncbi_strain_identifiers: GBBC 258

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: Psychrobacter faecalis

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Tunturiibacter gelidiferens

ncbi_submitter: Rutgers University


ncbi_organism_name: Avibacterium avium

ncbi_strain_identifiers: SCPM-O-B-13076 (Balash)

ncbi_submitter: SRCAMB


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Alistipes shahii


ncbi_organism_name: Bacillus cereus

ncbi_submitter: University of Zurich


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: EPFL


ncbi_organism_name: Rickettsia conorii subsp. raoultii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia conorii;sb__Rickettsia conorii subsp. raoultii


ncbi_organism_name: Bariatricus sp. HCP3S3_E12

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Streptomyces sp. BH106

ncbi_submitter: University of California Davis


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay site A deep

ncbi_isolation_source: Beach sand

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Northeastern University


ncbi_submitter: Rutgers University


ncbi_isolation_source: fruit

ncbi_organism_name: Komagataeibacter xylinus

ncbi_strain_identifiers: CGMCC 17276

ncbi_submitter: East China Normal University


ncbi_isolation_source: Stool Culture

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Francisella sp.

ncbi_submitter: EMG


ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_organism_name: Fimbriimonadales bacterium

ncbi_submitter: RIKEN-BRC


ncbi_country: Argentina: Pilar; Buenos Aires province

ncbi_isolation_source: Rectal swab of cattle in slaughterhouse

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: Instituto Nacional de Tecnologia Agropecuaria


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Paenibacillaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: South Africa: Mafikeng; Mafikeng Provincial Hospital

ncbi_isolation_source: diarrhea sample from child under the age of five

ncbi_organism_name: Holdemanella sp.

ncbi_submitter: North-west University


ncbi_country: Switzerland: Berne

ncbi_organism_name: Campylobacter helveticus

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China: Shanghai

ncbi_submitter: University of Maryland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: lake water

ncbi_organism_name: Conexibacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Brazil: Pirassununga; Sao Paolo

ncbi_organism_name: Bradyrhizobium sp. CB1717

ncbi_submitter: Murdoch University


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-103

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_strain_identifiers: new MAG-103

ncbi_submitter: Micoorganism


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFCSPHIGHO2_02_FULL_42_24


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Atlantic Ocean:Mid Cayman Rise

ncbi_isolation_source: Beebe hydrothermal vent plume at at depth of 4900m

ncbi_organism_name: Planctomycetes bacterium UBA1146

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__unclassified Planctomycetota;s__Planctomycetes bacterium UBA1146


ncbi_country: USA: Texas

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-5616

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Italy

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: urine

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Comamonadaceae bacterium


ncbi_isolation_source: Environmental; soil

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_isolation_source: feces

ncbi_organism_name: Corynebacterium stationis


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: AGUASCALIENTES STATE LABORATORY LESP


ncbi_country: China: Tongling Copper Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Japan

ncbi_isolation_source: soil

ncbi_submitter: University of Notre Dame

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;x__Burkholderia cepacia complex;s__Burkholderia ubonensis;sb__Burkholderia ubonensis subsp. mesacidophila


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Paenibacillus lupini

ncbi_strain_identifiers: CECT 8235

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;s__Candidatus Magasanikbacteria bacterium GW2011_GWA2_37_8


ncbi_country: China: Hong Kong SAR

ncbi_isolation_source: seawater

ncbi_organism_name: Rhodobacterales bacterium HKCCA1312

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: marine metagenome


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Azamiibacteriota;s__Candidatus Azambacteria bacterium RIFCSPLOWO2_02_FULL_42_10


ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Anderseniibacteriota;x__unclassified Candidatus Anderseniibacteriota;s__Candidatus Anderseniibacteriota bacterium


ncbi_country: Egypt: Gharbia; El Santa

ncbi_isolation_source: root nodules

ncbi_organism_name: Klebsiella pasteurii

ncbi_strain_identifiers: FR 50

ncbi_submitter: msa univeristy


ncbi_isolation_source: spleen

ncbi_organism_name: Mannheimia granulomatis

ncbi_submitter: Newport Laboratories Ltd.


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Comamonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada

ncbi_organism_name: Rhodococcus sp. JVH1

ncbi_submitter: Thompson Rivers University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. JVH1


ncbi_country: China: Beijing

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_country: Denmark

ncbi_organism_name: Campylobacter curvus

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Slovakia: Sarisske Michalany

ncbi_isolation_source: bird feces

ncbi_organism_name: Raoultella planticola

ncbi_submitter: Pavol Jozef Safarik University in Kosice, Faculty of Science


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_country: USA: Walter Reed Army Medical Center

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Uppsala University


ncbi_country: Canada: Ontario

ncbi_isolation_source: FOOD

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20121672


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: [Clostridium] nexile CAG:348

ncbi_submitter: DTU


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill