ncbi_country: Spain

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


gtdb_representative: f

ncbi_assembly_level: Scaffold

ncbi_country: China: Fankou; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: South china normal university


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Goettingen

ncbi_isolation_source: tomato rhizosphere

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_isolation_source: rumen

ncbi_organism_name: Prevotella sp. UBA2874

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom

ncbi_organism_name: Clostridium butyricum

ncbi_submitter: University of Surrey


ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Microcystis sp. LE19-55.1A

ncbi_submitter: University of Michigan


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium CG_2015-04_32_10


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Oribacterium sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_name: Rumen uncultured genome RUG14930

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Halobacteriovoraceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Azonexus sp.

ncbi_submitter: Zhejiang University


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Vellozia epidendroides specimens

ncbi_organism_name: Herbaspirillum sp.

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: South Korea

ncbi_organism_name: Aequorivita capsosiphonis DSM 23843

ncbi_refseq_category: reference genome

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aequorivita;s__Aequorivita capsosiphonis;x__Aequorivita capsosiphonis DSM 23843

ncbi_type_material_designation: assembly from type material


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_assembly_name: freshwater MAG --- LJ-3-65m_bin-0446

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: China: Zhejiang

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: City University of Hong Kong


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Calgary


ncbi_country: Lebanon

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Lebanese American University


ncbi_country: Antarctica

ncbi_isolation_source: Antarctic soil

ncbi_organism_name: Planococcus soli

ncbi_submitter: Beijing institute of technology


ncbi_country: Australia: Busselton

ncbi_isolation_source: shallow marine sediments

ncbi_organism_name: Desulfobacter sp.

ncbi_submitter: Dalhousie University


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: University of Florida


ncbi_isolation_source: not known


ncbi_country: China

ncbi_isolation_source: Thoracic sugery

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Guangzhou Medical University


ncbi_country: United Kingdom: Gloucestershire

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in a breeding trial plot

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_country: Denmark: Kgs. Lyngby; Technical University of Denmark

ncbi_isolation_source: granules from a lab-scale partial nitritation/anammox bioreactor

ncbi_submitter: Technical University of Denmark


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: Taiwan

ncbi_isolation_source: hospital

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Lactobacillus equicursoris

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Mammaliicoccus sciuri


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: sputum

ncbi_submitter: University of Michigan


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: Col 19-PUJ

ncbi_submitter: Pontificia Universidad Javeriana


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Fannyhessea vaginae

ncbi_submitter: IHU Mediterranee Infection


ncbi_isolation_source: Stool-RF

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bovismorbificans


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Texas

ncbi_isolation_source: Oral

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: The University of Texas at Dallas


ncbi_organism_name: Sporosarcina psychrophila

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_organism_name: Cytobacillus sp. Hm23

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: USA: North Carolina

ncbi_isolation_source: blood

ncbi_submitter: JCVI


ncbi_country: Laos

ncbi_isolation_source: River

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: University of Bern


ncbi_organism_name: uncultured Aestuariivirga sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Netherlands

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_isolation_source: bovine fecal sample

ncbi_organism_name: Escherichia coli O157:H7 str. FRIK2000

ncbi_submitter: Medical Biofilm Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. FRIK2000


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_assembly_level: Chromosome

ncbi_assembly_name: R-75716 assembly

ncbi_organism_name: Burkholderia sola

ncbi_submitter: LM-UGent


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


gtdb_type_species_of_genus: t

ncbi_organism_name: Sphingobium yanoikuyae

ncbi_submitter: University of Turku


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: Germany

ncbi_isolation_source: milk and milk products

ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: MHI 226

ncbi_submitter: TU Muenchen


ncbi_organism_name: Priestia taiwanensis


ncbi_country: Brazil: Pelotas

ncbi_organism_name: Leptospira noguchii str. Bonito

ncbi_strain_identifiers: Bonito

ncbi_submitter: J. Craig Venter Institute


ncbi_country: France

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: MS

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Transconjugant 13A

ncbi_submitter: Univ Mississippi Medical Center


ncbi_isolation_source: sewage plant sludge

ncbi_organism_name: Raoultella ornithinolytica

ncbi_strain_identifiers: Yangling I2

ncbi_submitter: Beijing Institute of Genomics,Chinese Academy of Sciences


ncbi_country: USA: FL

ncbi_isolation_source: uterus (Bos taurus)

ncbi_submitter: US Food and Drug Administration


ncbi_country: Atlantic Ocean

ncbi_isolation_source: intestine

ncbi_organism_name: Pseudoalteromonas sp. APC 3355

ncbi_submitter: University College Cork


ncbi_country: USA

ncbi_isolation_source: Spine

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: Church and Dwight


ncbi_organism_name: Fredinandcohnia sp. 179-A 10B2 NHS

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Fredinandcohnia;x__unclassified Fredinandcohnia;s__Fredinandcohnia sp. 179-A 10B2 NHS


ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Synechococcales cyanobacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Roseburia hominis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Streptococcus pasteurianus

ncbi_submitter: Nangjing agricultural university


ncbi_country: Tanzania

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_country: USA: South Carolina

ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University of Vienna


ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong University


ncbi_country: USA: Hopland; CA

ncbi_isolation_source: Avena fatua rhizosphere soil middle density fraction time point 6 weeks

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Shahid Beheshti University


ncbi_country: Malaysia

ncbi_isolation_source: respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: University of Galway


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: freshwater MAG --- Loc090721-6m_bin-083

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Sphingorhabdus sp. EL138

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Algeria: In Amenas

ncbi_isolation_source: Crude oil

ncbi_organism_name: Domibacillus sp. PGB-M46

ncbi_submitter: Pasteur Institute of Algeria


ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Desulfotomaculaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Northern Mariana Islands: Mariana Back-Arc; Hafa Adai Vent Field

ncbi_isolation_source: gill tissue

ncbi_organism_name: Alviniconcha hessleri gill endosymbiont

ncbi_submitter: University of Rhode Island

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__Alviniconcha hessleri gill endosymbiont


ncbi_country: India

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Canada: Vancouver

ncbi_isolation_source: activated sludge

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: The University of British Columbia


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Hazenella coriacea


ncbi_country: USA: Unknown

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: USA: Kansas

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_country: Australia: Newcastle

ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Queensland


ncbi_country: Australia: Magnetic Island; QLD

ncbi_organism_name: Synergistaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_country: Portugal: Lousa

ncbi_submitter: University of Aveiro


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_organism_name: uncultured Flavipsychrobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Bacillales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Romania: Targoviste

ncbi_isolation_source: Enviromental

ncbi_submitter: National Institute for Infectious Diseases "Matei Bals


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_country: Colombia: Tolima

ncbi_isolation_source: BOYACA

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Group of Cytogenetics, Phylogeny and Population Evolution, University of Tolima


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Wuhan

ncbi_isolation_source: leaves

ncbi_organism_name: Pseudomonas sp. SHLA9

ncbi_submitter: Hubei University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: California

ncbi_isolation_source: air

ncbi_organism_name: Microbacterium sp. H83

ncbi_submitter: UC Berkeley


ncbi_organism_name: Bifidobacteriaceae bacterium MCC01992

ncbi_submitter: Moringa milk industry co., ltd.


ncbi_country: Brazil: Para

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Federal University of Para


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_assembly_name: freshwater MAG --- LJ_bin-3683

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_submitter: MRSN BI Team


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rubislaw


ncbi_assembly_name: Salmonella enterica CVM 43756 v1.0

ncbi_country: USA

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: stool sample

ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_organism_name: Xanthomonas hortorum pv. hederae

ncbi_strain_identifiers: WHRI 7743

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Phocaeicola vulgatus

ncbi_strain_identifiers: HDF

ncbi_submitter: RWTH Aachen University Hospital


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Oscillospiraceae bacterium UBA3851

ncbi_submitter: University of Queensland


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 5.5 m monimolimnion layer of meromictic lake

ncbi_organism_name: Halanaerobium sp.

ncbi_submitter: Academia Sinica


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Pseudomonas lurida

ncbi_submitter: INRAE


ncbi_country: Peru

ncbi_isolation_source: liver and spleen of chicken (broiler)

ncbi_submitter: FARVET S.A.C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Stool Specimen

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: icddr,b


ncbi_country: Hong Kong

ncbi_isolation_source: water

ncbi_organism_name: Bacteroidetes bacterium UBA5543

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium UBA5543


ncbi_country: China

ncbi_isolation_source: mesophilic anaerobic digestion

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Kitasatospora sp. McL0602

ncbi_submitter: New Zealand Forest Research Institute


ncbi_organism_name: Klebsiella sp. R56

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sanmen People's Hospital


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Sedimentibacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp.


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Toulouse Biotechnology Institute


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Center for Genome Regulation (CRG)


ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;x__environmental samples;s__uncultured Cytophagales bacterium


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: uncultured Dechloromonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: SAN Group Biotech Germany


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Fujita Health University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Candidatus Aquilonibacter sp.


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: University of California Davis


ncbi_submitter: University of California Berkeley


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Streptomyces goshikiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_organism_name: Dokdonella sp.

ncbi_submitter: University of Sao Paulo


ncbi_strain_identifiers: 16f fall

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Treponema pedis

ncbi_submitter: Washington State University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Neisseria sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: university of tokyo


ncbi_country: USA: Pacific Norwthwest

ncbi_organism_name: Corynebacterium jeikeium

ncbi_submitter: University of Washington


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: PVC group bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;x__unclassified PVC group;s__PVC group bacterium


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: wastewater

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_assembly_name: Rumen uncultured genome RUG13465

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Spirochaetaceae bacterium


ncbi_country: Gambia

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Murdoch Children's Research Institute


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Russia: Sakhalin Island

ncbi_organism_name: Exiguobacterium sp. ERU653

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. ERU653


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD13878

ncbi_submitter: Broad Institute


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Nigeria

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University


ncbi_country: France: Champenoux

ncbi_isolation_source: Decaying oak heartwood

ncbi_organism_name: Acidisoma cellulosilyticum

ncbi_submitter: University of Occidental Brittany


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Tecnologico Nacional de Mexico/IT de Ursulo Galvan


ncbi_country: Canada: Halifax

ncbi_isolation_source: Lower respiratory tract

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: Region Zealand


ncbi_country: Australia: Sydney; NSW

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Hangzhou

ncbi_isolation_source: contaminated soil

ncbi_organism_name: Salinibacterium metalliresistens

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Chitinophaga sp. CCNWLW40

ncbi_submitter: Northwest A&F University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: France: Normandy

ncbi_isolation_source: wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: UR CATH

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University


ncbi_organism_name: Methylotenera sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Streptococcus sp. Marseille-Q6470

ncbi_submitter: IHU - Mediterranee Infection


ncbi_submitter: IRCCS Fondazione Policlinico San Matteo


ncbi_organism_name: Candidatus Saccharicenans sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;x__unclassified Candidatus Saccharicenans;s__Candidatus Saccharicenans sp.


ncbi_organism_name: Alistipes inops

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Allobaculum sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: Kenya

ncbi_organism_name: Alphaproteobacteria bacterium UBA756


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_country: USA: New York; Buffalo

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: University at Buffalo


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Pacific Ocean: South Pacific

ncbi_isolation_source: Seaweed

ncbi_organism_name: Pseudoalteromonas sp. S3776

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Pusan National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Bacillus cereus group sp. MYBK87-1

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK87-1


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: sputum

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Helicobacter typhlonius


ncbi_organism_name: Streptomyces rimosus


ncbi_submitter: Jiangxi Academy of Agricultural Sciences


ncbi_organism_name: Allosphingosinicella sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Dysgonomonas sp.

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Serratia ureilytica


ncbi_organism_name: Candidatus Fonsibacter sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__Candidatus Pelagibacterales incertae sedis;g__Candidatus Fonsibacter;x__unclassified Candidatus Fonsibacter;s__Candidatus Fonsibacter sp.


ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_country: Canada: Quebec

ncbi_isolation_source: Biofilm from a sink drain in a neonatal intensive care unit

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Institut national de la recherche scientifique


ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Anderseniella sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom: Norwich

ncbi_organism_name: Kaistella pullorum

ncbi_submitter: Quadram Institutte


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Balneolales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Colombia

ncbi_isolation_source: mixture of bacteria from the intestinal contents of commercial Nile tilapia grown for 33 days in a laboratory bioreactor

ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: Universidad de La Sabana


ncbi_organism_name: Escherichia sp. TW11588

ncbi_submitter: Georgia Institute of Technology, School of Civil and Environmental Engineering


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Helicobacter pametensis ATCC 51478

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: EMG


ncbi_isolation_source: mutant of Streptomyces rimosus subsp. rimosus R7

ncbi_organism_name: Streptomyces rimosus subsp. rimosus

ncbi_submitter: Uni Bielefeld


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China: Changsha

ncbi_isolation_source: liver abscess

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Beijing genomics institute


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Isolated from commercial product

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Chr. Hansen


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: The laboratory of genetics and plant breeding, The National institute of Agronomy of Tunis


ncbi_organism_name: Candidatus Nitrotoga sp.

ncbi_submitter: University of Montana

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Nitrosomonadales;f__Gallionellaceae;g__Candidatus Nitrotoga;x__unclassified Candidatus Nitrotoga;s__Candidatus Nitrotoga sp.


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Poland

ncbi_organism_name: Brachybacterium faecium


ncbi_isolation_source: pellet

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_isolation_source: Coconi

ncbi_organism_name: Leptospira mayottensis

ncbi_submitter: Universite de La Reunion


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_isolation_source: Freshwater lake

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: freshwater MAG --- MJ130916B_bin-439

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_country: USA: University of Chicago

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Miami University


ncbi_organism_name: Serratia sp. CY55921

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY55921


ncbi_organism_name: Janthinobacterium sp. LS2A

ncbi_submitter: Northeastern University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Roseburia sp. CAG:182

ncbi_submitter: DTU


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Mid-Cayman Rise Vent Fluids

ncbi_organism_name: Mariprofundaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Streptococcus ferus

ncbi_submitter: Nanjing University


ncbi_country: China: Kunming

ncbi_isolation_source: feces

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Portugal: Alcochete

ncbi_isolation_source: sediments

ncbi_organism_name: Streptomyces meridianus

ncbi_submitter: Faculty of Sciences University of Porto


ncbi_country: South Africa

ncbi_isolation_source: Irrigation water

ncbi_strain_identifiers: UPMP 1995

ncbi_submitter: University of Pretoria


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University hospital Lubeck


ncbi_country: USA: Tift Co. GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Butyrivibrio sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Estonia

ncbi_isolation_source: wound secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_organism_name: Prosthecobacter debontii

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolate: metabat2_coassembly_bwa.959 MAG

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_strain_identifiers: metabat2_coassembly_bwa.959 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Coprococcus sp.


ncbi_organism_name: Gordonia sp. KTR9

ncbi_submitter: Department of Microbiology & Immunology, University of British Columbia, Vancouver, British Columbia, Canada.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. KTR9


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Denmark: Avedore

ncbi_isolation_source: activated sludge from Aved_18-Q3-R54-62

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces


ncbi_organism_name: uncultured Capnocytophaga sp.


ncbi_assembly_name: Rumen uncultured genome RUG13158

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Switzerland

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Bern


ncbi_submitter: Mahidol University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Dethiobacteria bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: France: Camargue

ncbi_isolation_source: water

ncbi_organism_name: Pectobacteriaceae bacterium CE70

ncbi_submitter: CNRS UMR5240


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Greece: Santorini

ncbi_isolation_source: soil

ncbi_organism_name: Actinomadura graeca

ncbi_submitter: University of Nottingham


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITY HOSPITAL TUEBINGEN


ncbi_country: China: Xinjiang

ncbi_organism_name: Bacillus sp. FJAT-21955

ncbi_submitter: Fujian Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FJAT-21955


ncbi_organism_name: Streptomyces ardesiacus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Trento


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: UNITED STATES ARMY MEDICAL RESEARCH DIRECTORATE-KENYA


ncbi_country: USA: FL Keys

ncbi_isolation_source: coral tissue

ncbi_organism_name: Marinibacterium sp.

ncbi_submitter: NOAA/UM


ncbi_organism_name: Bacteroides caccae


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Coprococcus catus

ncbi_submitter: EMG


ncbi_country: China: Liaoning; Panjin

ncbi_organism_name: Acinetobacter soli

ncbi_submitter: Qingdao Agriculture University


ncbi_isolation_source: Chicken gizzard (Gallus gallus)

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Mississippi State University


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Canada: Alberta

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110354


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: gastric mucosa

ncbi_organism_name: Helicobacter suis

ncbi_submitter: University of Antwerp, Belgium


ncbi_country: Spain: Catalunya

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Marixanthomonas sp.


ncbi_organism_name: Ornithinibacillus salinisoli

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Haemophilus sp. HMSC073C03

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Australia

ncbi_isolation_source: Blood Culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UNIVERSITY OF MELBOURNE


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Candidatus Saccharimonas sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;x__environmental samples;s__uncultured Candidatus Saccharimonas sp.


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Bifidobacterium longum


ncbi_organism_name: Streptomyces goshikiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Lentimicrobiaceae bacterium


ncbi_organism_name: Rhodococcus kronopolitis


ncbi_organism_name: Pedosphaera sp.

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: uncultured Francisella sp.


ncbi_organism_name: Streptomyces sp. NPDC056820


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Vienna


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium


ncbi_organism_name: uncultured Polyangiaceae bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;x__environmental samples;s__uncultured Candidatus Obscuribacterales bacterium


ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Collinsella sp. LCP19S3_D2

ncbi_submitter: Quadram Institute Bioscience


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: Center for Nuclear Energy in Agriculture - University of Sao Paulo


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Montreal


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Ramlibacter sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Salmonella sp. NW19

ncbi_submitter: Sichuan University


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: General Hospital of Ningxia Medical University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Bacillus inaquosorum

ncbi_strain_identifiers: pozas rojas

ncbi_submitter: National Autonomous University of Mexico


ncbi_organism_name: Candidatus Coproplasma sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Coproplasma;x__unclassified Candidatus Coproplasma;s__Candidatus Coproplasma sp.


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Spain

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Quadram Institutte


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-07180

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_submitter: Colorado State University


ncbi_country: Colombia

ncbi_organism_name: Helicobacter pylori NQ4216

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Cornell University


ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Loyola University Chicago


ncbi_assembly_name: IMG-taxon 2619618868 annotated assembly

ncbi_organism_name: Rhizobium sp. AN6A

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Malaysia: University Malaya Medical Center

ncbi_submitter: UNIVERSITY OF MALAYA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis UM 1072388579


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Inje University


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Southampton


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: University of Sao Paulo


ncbi_isolate: Acidobacteria sp. RBC084

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_strain_identifiers: Acidobacteria sp. RBC084

ncbi_submitter: UNIVERSITY OF WATERLOO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Labrador Sea

ncbi_isolation_source: Microcosm inoculated with Labrador Shelf sediment and amended with petroleum hydrocarbons

ncbi_organism_name: Oleispira antarctica

ncbi_submitter: University of Calgary


ncbi_country: France: Bordeaux

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Prevotella sp. UBA3674

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Bacillus sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Institut Pasteur


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Mexico: Cuernavaca

ncbi_isolation_source: bean rhizophere

ncbi_organism_name: Pseudarthrobacter chlorophenolicus

ncbi_submitter: Center for Genomic Sciences, UNAM


ncbi_country: USA: Chesapeake Bay; Maryland

ncbi_isolation_source: surface seawater

ncbi_organism_name: Pseudoalteromonas sp. SR43-7

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: France: Lille

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_organism_name: bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Roseomonas mucosa

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: sediment

ncbi_organism_name: Citrobacter arsenatis

ncbi_submitter: Hubei Polytechnic University


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Pseudomonas sp. W4I3

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: WA

ncbi_organism_name: Morganella morganii

ncbi_submitter: University of Washington


ncbi_organism_name: Candidatus Pseudothioglobus sp.

ncbi_submitter: Tang lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Pseudothioglobus;x__unclassified Candidatus Pseudothioglobus;s__Candidatus Pseudothioglobus sp.


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_country: China: Beijing

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese PLA General Hospital


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University of Copenhagen


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: Medicine / Division of Infectious Diseases, University of North Carolina


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Russia: Moscow

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a a 3.0 um filter and then through a 0.2 um filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatius Mariprofundia;x__unclassified Zetaproteobacteria;s__Zetaproteobacteria bacterium CG1_02_55_237


ncbi_country: Belize: Twin Cays

ncbi_isolation_source: mangrove peat

ncbi_organism_name: Candidatus Thiobius zoothamnicola

ncbi_submitter: University of Vienna

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__;f__;g__Candidatus Thiobius;s__Candidatus Thiobius zoothamnicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;g__Candidatus Thiobius;s__Candidatus Thiobius zoothamnicola


ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Octadecabacter sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Enterococcus avium

ncbi_submitter: University of Lausanne


ncbi_organism_name: Nonomuraea muscovyensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Thailand: Nakhon Nayok

ncbi_isolation_source: soil

ncbi_organism_name: Actinoplanes sp. TBRC 11911

ncbi_submitter: National Center for Genetic Engineering and Biotechnology (BIOTEC)


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Gemmatimonas phototrophica

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Thailand

ncbi_isolation_source: root

ncbi_organism_name: Streptomyces justiciae

ncbi_submitter: Chulalongkorn University


ncbi_country: India

ncbi_organism_name: Mycobacterium sp. GA-2829

ncbi_submitter: JCVI


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_organism_name: Candidatus Cloacimonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;x__unclassified Candidatus Cloacimonadales;s__Candidatus Cloacimonadales bacterium


ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Bacillus sp. BR_7

ncbi_submitter: Banaras Hindu University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. BR_7


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_strain_identifiers: feltiae Moldova

ncbi_submitter: UWM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Xenorhabdus;s__Xenorhabdus bovienii;x__Xenorhabdus bovienii str. feltiae Moldova


ncbi_country: Norway

ncbi_isolation_source: Salmon loins

ncbi_organism_name: Aeromonas bestiarum

ncbi_submitter: NTNU


ncbi_organism_name: Flexilinea sp.


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Trinity College Dublin


ncbi_organism_name: Neisseria sicca

ncbi_submitter: EMG


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Microbacterium testaceum

ncbi_submitter: BGI


ncbi_organism_name: Escherichia coli 6.0172

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Enterobacter soli

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Agrobacterium sp. CGMCC 11546

ncbi_strain_identifiers: CGMCC 11546

ncbi_submitter: East China Normal University


ncbi_organism_name: Candidatus Methylomirabilia bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;x__unclassified Candidatus Methylomirabilia;s__Candidatus Methylomirabilia bacterium


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: ABFQB

ncbi_submitter: NHGRI


ncbi_country: China: Aoshan Bay

ncbi_isolation_source: seawater

ncbi_organism_name: Alteromonas aquimaris

ncbi_submitter: Shanxi Agricultura Univesity


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Nitrospinaceae bacterium

ncbi_submitter: Harvard University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil

ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: CBMAI 1302

ncbi_submitter: Agrivalle Brasil Industria e Comercio de Produtos Agricolas Ltda


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Northwestern University


ncbi_organism_name: Caldisericia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: hospital sewage

ncbi_submitter: Christian Medical College


ncbi_country: China: Qingdao

ncbi_submitter: Shandong University


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Chryseobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Italy: Turi

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Alberta


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Oscillospiraceae bacterium UBA1230

ncbi_submitter: University of Queensland


ncbi_country: Japan

ncbi_isolation_source: animal

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Toho University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA

ncbi_isolation_source: chicken carcass

ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Davis

ncbi_submitter: Utrecht University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter fetus;sb__Campylobacter fetus subsp. venerealis;x__Campylobacter fetus subsp. venerealis cfvB10


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Thermotoga sp.

ncbi_submitter: California Institute of Technology


ncbi_country: USA: University of Georgia in Athens; GA

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; hindgut

ncbi_organism_name: Desulfosarcina sp. OttesenSCG-928-A07

ncbi_submitter: University of Georgia


ncbi_country: Ireland

ncbi_organism_name: Weissella cibaria

ncbi_submitter: CIT / UCC


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Cutibacterium sp.

ncbi_submitter: NIH/NHGRI


ncbi_isolate: Prospectively collected (P)

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: Prospectively collected (P)

ncbi_submitter: Erasmus University Medical Center


ncbi_organism_name: Enterobacter sp. BIDMC100

ncbi_submitter: Ministry of Public Health-Thailand

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter sp. BIDMC100


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Hydrogenophilales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Sweden

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: Switzerland

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Agroscope, Microbial Food Safety


ncbi_country: Jersey

ncbi_submitter: University of Bath


ncbi_organism_name: Streptomyces griseoflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: Alistipes putredinis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: South Africa

ncbi_organism_name: Mesorhizobium sp. WSM3224

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Fen

ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_submitter: Medical Life Sciences Institute


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Litoreibacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Texas A&M University


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Lewinellaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangzhou

ncbi_isolation_source: gut

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_isolation_source: Soil

ncbi_organism_name: Saccharococcus caldoxylosilyticus

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sichuan University


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Candidatus Enterovibrio escicola

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: China: Suzhou

ncbi_isolation_source: feces

ncbi_organism_name: Paenibacillus brevis

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_assembly_name: CLCgenomics

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ebi


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Lethbridge


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Acaryochloris thomasi RCC1774


ncbi_country: China: Zhejiang

ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: The First Affiliated Hospital of Medical College, Zhejiang University


ncbi_assembly_name: Rumen uncultured genome RUG10101

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus delphini

ncbi_submitter: University of Bern


ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFCSPHIGHO2_12_FULL_40_77


ncbi_submitter: Division of Infection and Immunity, International Institute for Zoonosis Control, Hokkaido University


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: ETH Zurich


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae O1 str. PCS-023

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 str. PCS-023


ncbi_organism_name: Spirillospora sp. NPDC049652

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Thompson


ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_isolation_source: frozen rohu fish

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000223


ncbi_assembly_name: Serratia sp. strain LCN16

ncbi_genome_representation: partial

ncbi_organism_name: Serratia grimesii

ncbi_submitter: James Hutton Institute


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: University of Chicago


ncbi_country: Canada: Lacombe

ncbi_organism_name: Megasphaera elsdenii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_isolation_source: soil

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Robert Koch Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: Pacific Northwest

ncbi_isolation_source: blood from patient with bacteremia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Asaia bogorensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Acinetobacter sp. UBA7654

ncbi_submitter: University of Queensland


ncbi_country: China: chongqing

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: MDR-CQD

ncbi_submitter: Chongqing People's Hospital


ncbi_country: USA: GA

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: USA: Ohio

ncbi_submitter: USDA


ncbi_country: USA: Georgia; Sapelo Island

ncbi_isolation_source: surface seawater inoculated into a synthetic phycosphere

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Georgia


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Global Health Research Unit


ncbi_country: Spain: Salamanca

ncbi_isolation_source: Laboratory Air

ncbi_organism_name: Paenibacillus xylanilyticus

ncbi_submitter: Indigo Agriculture


ncbi_country: Thailand: Chachoengsao

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Chulalongkorn University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Acetobacter sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: United Kingdom: Sparsholt; Hampshire

ncbi_isolation_source: porcine fecal sample

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Quadram Institute BioScience


ncbi_country: USA: Walter Reed Army Medical Center; Washington; DC

ncbi_isolation_source: perineum

ncbi_organism_name: Acinetobacter baumannii OIFC111

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: clinical

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Halothiobacillus sp.

ncbi_submitter: McGill University


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H59303_080912

ncbi_submitter: Broad Institute


ncbi_country: South Africa

ncbi_isolation_source: lung

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_isolation_source: Madura foot

ncbi_organism_name: Nocardia farcinica

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Unidad de Genomica y Bioinformatica


ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Fibrobacter sp.


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: uncultured Tepidisphaerales bacterium


ncbi_organism_name: Salmonella sp. 741265052_HSA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Luteibacter sp. E-22

ncbi_submitter: Iowa State University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: First Affiliated Hospital of Nanchang University, Nanchang University, Nanchang


ncbi_organism_name: Aeromonas rivipollensis

ncbi_submitter: Northumbria University


ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: uncultured Acidimicrobiales bacterium


ncbi_organism_name: Enterococcus raffinosus

ncbi_submitter: Technical University of Munich


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_submitter: University of Sheffield


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Segatella copri

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Firmicutes bacterium CAG:424

ncbi_submitter: DTU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:424


ncbi_organism_name: Neisseria sp. P0022.S009

ncbi_submitter: Rochester Institute of Technology


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Lentisphaerota bacterium

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerota bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Viet Nam

ncbi_isolation_source: The shrimp farm in North Vietnam

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: BIOTEC


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China: Hunan; Huangshaping

ncbi_isolation_source: sediment

ncbi_organism_name: Leptospirillum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: Acinetobacter ursingii strain E5131942 complete genome sequence

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: University of Sao Paulo - Faculty of Pharmacy


ncbi_isolation_source: vagina

ncbi_organism_name: Veillonella dispar

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Adlercreutzia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea

ncbi_isolation_source: Retail raw chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Seoul National University


ncbi_organism_name: Kibdelosporangium aridum

ncbi_submitter: McMaster University


ncbi_country: Norway: Viken

ncbi_isolation_source: Silage

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: India: Freshwater lake

ncbi_isolation_source: Rhizobial soil

ncbi_organism_name: Comamonas sp. JC664

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_country: Haiti

ncbi_isolation_source: passed stool

ncbi_organism_name: Vibrio cholerae H1

ncbi_submitter: Pacific Biosciences


ncbi_country: USA

ncbi_isolation_source: Butter blis

ncbi_organism_name: Serratia fonticola

ncbi_submitter: University of Arkansas for Medical Sciences


ncbi_organism_name: uncultured Tissierellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: Tissue

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: INRA


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_assembly_name: Massilimalia massiliensis

ncbi_organism_name: Massiliimalia massiliensis

ncbi_submitter: URMITE


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: UANTW


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_isolation_source: Human

ncbi_organism_name: Achromobacter aegrifaciens

ncbi_submitter: GHENT UNIVERSITY


ncbi_country: China: Shandong

ncbi_isolation_source: blood specimen

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University People's hospital


ncbi_country: Australia: Magnetic Island; QLD

ncbi_isolation_source: feces

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pittsburgh; PA; UPMC Children s Hospital of Pittsburgh

ncbi_isolation_source: Laboratory mutagenesis

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: Proximal colon


ncbi_organism_name: Rubrivivax sp. A210

ncbi_submitter: TU Berlin


ncbi_country: Canada: North Alberta

ncbi_isolation_source: Suncor tailing pond sample

ncbi_organism_name: Holophagales bacterium UBA4812


ncbi_isolation_source: lake water

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA3724

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA3724


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: EMG


ncbi_country: USA: Los Angeles

ncbi_isolation_source: rectum

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: JCVI


ncbi_country: Spain

ncbi_isolation_source: Hospital Universitario Mutua de Terrassa (Terrassa)

ncbi_organism_name: Serratia marcescens

ncbi_submitter: CNAG-CRG


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: ascitic fluid

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Washington University School of Medicine


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Germany: Tubingen

ncbi_isolation_source: soil

ncbi_organism_name: Rhodococcus opacus

ncbi_submitter: US Geological Survey


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_organism_name: Paraburkholderia aspalathi

ncbi_submitter: University of Illinois at Chicago


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Roseobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_assembly_name: freshwater MAG --- AM-2014-D6_bin-169

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Firestoneibacteriota;x__unclassified Candidatus Firestoneibacteriota;s__Candidatus Firestoneibacteriota bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Suzhou

ncbi_isolation_source: feces

ncbi_organism_name: Pantoea septica

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: Bartonella sp. AP72JLCBS

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: China: Guangdong

ncbi_isolation_source: environment

ncbi_organism_name: Staphylococcus sp. GDX8P114P-1

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Aarhus University


ncbi_country: Colombia: Santander de Quilichao

ncbi_isolation_source: cassava fermentation tank

ncbi_organism_name: Eggerthellaceae bacterium UBA5803

ncbi_submitter: University of Queensland


ncbi_country: USA: California

ncbi_isolation_source: well water

ncbi_organism_name: Erysipelotrichia bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: University of Exeter


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Stanford University


ncbi_country: Brazil: Minas Gerais state

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: EPFL


ncbi_country: USA: OH

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Pseudomonas sp. RSB 5.4

ncbi_strain_identifiers: RSB 5.4

ncbi_submitter: University of Tuebingen


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Nonomuraea sp. NPDC050202

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_organism_name: Prevotellamassilia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Escherichia marmotae

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Northwest Minzu University


ncbi_country: USA: GA

ncbi_isolation_source: stream

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_country: China

ncbi_isolation_source: food

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Mesomycoplasma hyopneumoniae 232

ncbi_submitter: Iowa State University


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Center for Microbial Communities


ncbi_country: Australia

ncbi_organism_name: Escherichia coli

ncbi_submitter: The ithree institute


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: Chesapeake Bay

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Clemson University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: uncultured Coprococcus sp.

ncbi_submitter: EMG


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: University of British Columbia