ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSITY OF EXETER


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


gtdb_representative: t

ncbi_assembly_level: Scaffold

ncbi_organism_name: uncultured Azospirillum sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Actinomarina sp.

ncbi_submitter: Tang lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__unclassified Candidatus Actinomarina;s__Candidatus Actinomarina sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Peru: Lima

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: The First Hospital of Jilin University


ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: IMG-taxon 2585428147 annotated assembly

ncbi_organism_name: Thiothrix eikelboomii

ncbi_refseq_category: reference genome

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_type_material_designation: assembly from type material


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Queensland


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: North-West University


ncbi_country: Malaysia

ncbi_isolation_source: Compost

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: University Malaysia Sabah


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Luminiphilus sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_assembly_level: Chromosome

ncbi_country: China

ncbi_isolation_source: anal swab

ncbi_submitter: YangZhou university


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Agathobacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: large intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: animal

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_country: Germany: Wilhelmshaven

ncbi_organism_name: Photobacterium sp. WH24

ncbi_submitter: HZI-Helmholtz Centre for Infection Research


ncbi_organism_name: Bacteroides salyersiae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Germany: Bavarian Alps region

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWE1_40_20


ncbi_country: China: Anhui

ncbi_isolation_source: chicken meat products

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_isolation_source: feces


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Streptococcus pyogenes

ncbi_strain_identifiers: Isolate 16

ncbi_submitter: University of Siena


ncbi_country: France

ncbi_isolation_source: silage

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: CIRM-BIA 1517

ncbi_submitter: Brigham Young University


ncbi_submitter: Key Laboratory of Dairy BiotecInner Mongolia Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium dentium;x__Bifidobacterium dentium JCM 1195 = DSM 20436


ncbi_organism_name: Malacoplasma sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: Rumen uncultured genome RUG10667

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Puniceicoccaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces diastaticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: lung

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: UMR Vetagro sup / Anses


ncbi_country: China: Beijing

ncbi_isolation_source: Artificial municipal wastewater treatment

ncbi_organism_name: Ignavibacteria bacterium CHB1

ncbi_submitter: Peking University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__unclassified Ignavibacteria;s__Ignavibacteria bacterium CHB1


ncbi_isolation_source: Pharygitis

ncbi_submitter: SC


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Canada: British Columbia

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: IHU - Mediterranee Infection


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Corynebacteriaceae bacterium UBA6691

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom:England

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: ROSLIN


ncbi_country: China: Lanzhou; Gansu

ncbi_organism_name: Bradyrhizobium sp. AUGA SZCCT0042

ncbi_strain_identifiers: AUGA SZCCT0042

ncbi_submitter: The Chinese University of Hong Kong


ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy: d__Bacteria;p__Candidatus Deferrimicrobiota;c__Candidatus Deferrimicrobia;o__Candidatus Deferrimicrobiales;f__Candidatus Deferrimicrobiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Deferrimicrobiota;c__Candidatus Deferrimicrobia;o__Candidatus Deferrimicrobiales;f__Candidatus Deferrimicrobiaceae;x__unclassified Candidatus Deferrimicrobiaceae;s__Candidatus Deferrimicrobiaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: uncultured Allobaculum sp.


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_strain_identifiers: NNKp 2285

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_submitter: Wroclaw University of Environmental and Life Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Gallinarum


ncbi_country: Atlantic Ocean: Sargasso Sea; BATS

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; marine water

ncbi_organism_name: SAR86 cluster bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium


ncbi_country: Ethiopia: Oromia; West Shewa

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Enterococcus sp. DIV0358

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_country: Poland: Dzialdowo

ncbi_isolation_source: throat

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: National Medicines Institute


ncbi_country: USA: AZ

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Belgium

ncbi_organism_name: Brucella suis F8/06-2


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: Spain: Asturias

ncbi_organism_name: Lentilactobacillus parabuchneri

ncbi_submitter: Universidad de Leon (Spain)


ncbi_assembly_name: Rumen uncultured genome RUG11704

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Mycoplasmopsis synoviae

ncbi_submitter: Yangzhou University


ncbi_country: China: Jinhua

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_submitter: Quadram Institutte


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Polytechnic University of Marche Medical School


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universiti Putra Malaysia


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_isolation_source: rhizosphere soil culture M56

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Tsukamurella soli

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_assembly_name: Salmonella enterica CVM N51983 v1.0

ncbi_country: USA: LA

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: IMG-taxon 2684622890 annotated assembly

ncbi_organism_name: Halpernia humi

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Conexibacter sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: India: Assam

ncbi_organism_name: Escherichia coli


ncbi_country: USA

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: \The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Zambryskiibacteriota;s__Candidatus Zambryskibacteria bacterium CG_4_9_14_3_um_filter_40_16


ncbi_country: USA: Florida;Looe Key

ncbi_isolation_source: marine

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_organism_name: Morganella morganii

ncbi_submitter: University Hospital Muenster


ncbi_country: Japan

ncbi_organism_name: Francisella halioticida

ncbi_submitter: Swedish Defence Research Agency (FOI)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Children's Hospital of Fudan University


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0984

ncbi_submitter: Broad Institute


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: lake water

ncbi_organism_name: Fibrobacterota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;x__unclassified Fibrobacterota;s__Fibrobacterota bacterium


ncbi_submitter: Macquarie University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Abuja


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_organism_name: Wolbachia sp.

ncbi_submitter: Faculty of Science, University of South Bohemia


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Navamindradhiraj University


ncbi_organism_name: Longicatena caecimuris

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Enterococcus sp. AZ020


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Shandong University


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Hymenobacter sp.

ncbi_submitter: EPFL


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Switzerland: Mt Terri URL; St-Ursanne

ncbi_isolation_source: Opalinus Clay rock porewater BRC-3 borehole

ncbi_organism_name: bacterium BRH_c32


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: EMG


ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_submitter: Center for Microbial Communities


ncbi_country: Panama: Bocas del Toro; Inner Solarte

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Stony Brook University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_submitter: Biomin Research Center


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: University of Veterinary Sciences


ncbi_organism_name: Streptococcus thermophilus


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_country: Slovenia: Marine Biology Station Piran

ncbi_organism_name: SAR202 cluster bacterium bin90

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium bin90


ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Sichuan University


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Succiniclasticum sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Kansas

ncbi_isolation_source: temperate grassland disturbed soil

ncbi_organism_name: Protaetiibacter sp. SSC-01

ncbi_submitter: Emporia State University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


gtdb_type_species_of_genus: t

ncbi_strain_identifiers: Philadelphia 1

ncbi_submitter: HHMI/Dept Microbiology, Tufts University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella;s__Legionella pneumophila;sb__Legionella pneumophila subsp. pneumophila;x__Legionella pneumophila subsp. pneumophila Lp02;x__Legionella pneumophila subsp. pneumophila str. Hextuple_2q


ncbi_organism_name: Stenotrophomonas pavanii


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Shimia thalassica

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Toronto


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: Gladstone Institutes


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-347-J19


ncbi_country: Niger

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: University of Florida


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_country: USA

ncbi_isolation_source: Goat cheese

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Austria: Vienna

ncbi_isolation_source: 10 mM sulfoquinovose-amended vegetarian human fecal microcosm

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Vienna


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Monash University


ncbi_country: Lebanon

ncbi_submitter: Lebanese American University


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled pig faecal samples collected from floor of farm

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: The REHAB Consortium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Atribacterota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Atribacterota;x__environmental samples;s__uncultured Atribacterota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Rothia aeria

ncbi_submitter: EMG


ncbi_country: Australia

ncbi_submitter: Massey University


ncbi_organism_name: Gallibacterium anatis

ncbi_submitter: Clinic for Poultry and Fish Medicine - Vetmeduni Vienna


ncbi_country: China: Guangdong

ncbi_isolation_source: stool

ncbi_submitter: Guangdong CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: South Africa: Eastern Cape

ncbi_organism_name: Ehrlichia ruminantium

ncbi_strain_identifiers: Riverside

ncbi_submitter: ARC - Onderstepoort Veterinary Research


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 1-5 micron fraction

ncbi_organism_name: Vibrio breoganii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: South Africa

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zoonosis Science Center


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Gluconobacter sphaericus NBRC 12467

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: Human milk

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: URMITE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Germany

ncbi_submitter: University Hospital Frankfurt


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: University of Oxford


ncbi_organism_name: Bacteroides intestinalis


ncbi_isolation_source: lake water

ncbi_organism_name: Oligoflexales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: desert soil

ncbi_organism_name: Aridibaculum aurantiacum

ncbi_strain_identifiers: SYSU D00508

ncbi_submitter: Sun Yat-Sen University


ncbi_country: China: Nantong; jiangsu province

ncbi_isolation_source: a anal swab sample of swine origin

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Yangzhou University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Anderseniella sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Norway

ncbi_submitter: Nofima


ncbi_country: China: Jinhua

ncbi_isolation_source: sputum

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: caecum

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Norwegian Veterinary Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: urine

ncbi_submitter: Monash University


ncbi_country: Belgium: Ghent

ncbi_isolation_source: top layer of a denitrification tank of a waste water treatment plant

ncbi_organism_name: Methylomonas lenta

ncbi_submitter: Ghent University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli O157

ncbi_submitter: Korea National Institute of Health, Korea Centers for Disease Control & Prevention


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_organism_name: Streptococcus sinensis

ncbi_submitter: Genoxor Medicial&Science Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: Blood

ncbi_submitter: SC


ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Tatoosh Island; Washington

ncbi_isolation_source: kelp blade surface swab

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: University of Washington-Seattle


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Parabacteroides sp. 20_3

ncbi_submitter: BGI


ncbi_organism_name: Aquimarina muelleri DSM 19832

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aquimarina;s__Aquimarina muelleri;x__Aquimarina muelleri DSM 19832


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Poultry

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA: New York

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: University of Chicago


ncbi_country: China: Sichuan

ncbi_isolation_source: human feces

ncbi_organism_name: Oscillospiraceae bacterium D1

ncbi_submitter: Chengdu Biogas Institute of Ministry of Agriculture and Rural Affairs


ncbi_organism_name: Priestia megaterium

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Jiangnan University


ncbi_country: China: Innermogolia

ncbi_isolation_source: sediments

ncbi_organism_name: Magnetococcales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_country: Sudan

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: CA; Davis

ncbi_organism_name: Raoultella planticola

ncbi_submitter: Evolve Biosystems Inc.


ncbi_country: Sri Lanka: Colombo

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: USA: Kansas

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA/ARS


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: Atlanta; GA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Emory University


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: cell culture

ncbi_organism_name: Bacillus aerius

ncbi_submitter: NEB


ncbi_country: Finland

ncbi_isolation_source: barley grains

ncbi_organism_name: Acidipropionibacterium virtanenii

ncbi_submitter: University of Helsinki


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: seawater

ncbi_organism_name: Marinomonas pontica

ncbi_submitter: Chung-Ang University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus sonorensis

ncbi_submitter: Technical University of Denmark


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA60

ncbi_submitter: Broad Institute


ncbi_isolate: XDR-PA

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Roseicyclus sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Queensland


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Coriobacteriaceae bacterium AM04S-29

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: USA: Blacksberg; Virginia

ncbi_isolation_source: human oral cavity

ncbi_organism_name: Prevotella multiformis

ncbi_submitter: The Forsyth Institute


ncbi_country: Argentina

ncbi_isolation_source: outbreak

ncbi_organism_name: Clostridium botulinum

ncbi_strain_identifiers: BrQuSJ

ncbi_submitter: Northern Arizona University


ncbi_country: Croatia

ncbi_organism_name: Legionella anisa

ncbi_submitter: Danish Technical University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Xanthomonas phaseoli pv. phaseoli

ncbi_submitter: IRHS


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: bovine feces

ncbi_organism_name: Clostridium estertheticum

ncbi_submitter: University of Zurich


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: USA: Boston

ncbi_organism_name: Veillonella dispar

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Indonesia

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Germany

ncbi_isolation_source: raw milk

ncbi_organism_name: Pseudomonas fragi

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Nagoya University


ncbi_country: South Korea: North Port; Mokpo

ncbi_organism_name: Acuticoccus sp. MNP-M23

ncbi_submitter: Korea research institute of Bioscience and Biotechnology


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Agrobacterium pusense


ncbi_organism_name: Sphingobacterium multivorum


ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: Center for Bioinformatics and Computational Biology of Colombia BIOS


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Cote d Ivoire: Tai National Park

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: University of Kaiserslautern


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Leuconostoc sp.

ncbi_submitter: EMG


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Microbacterium sp. NPDC079208

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Tidjanibacter sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA

ncbi_organism_name: Escherichia sp. KCJ4928

ncbi_submitter: University of Florida


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Mobilibacterium sp.


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: RIKEN-BRC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Atopobacter phocae ATCC BAA-285

ncbi_strain_identifiers: ATCC BAA-285

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Atopobacter;s__Atopobacter phocae;x__Atopobacter phocae ATCC BAA-285


ncbi_country: USA: Boston; MA

ncbi_isolation_source: Tongue dorsum

ncbi_organism_name: Cutibacterium modestum

ncbi_submitter: The Forsyth Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Thomasclavelia cocleata


ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter sp. 1294596

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;x__unclassified Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter sp. 1294596


ncbi_country: South Korea: Uljin

ncbi_isolation_source: seawater

ncbi_organism_name: Ferrimonas lipolytica

ncbi_submitter: National Marine Biodiversity Institute of Korea


ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Bacillus spizizenii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: sink drain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: CF patient

ncbi_organism_name: Burkholderia latens

ncbi_submitter: LM-UGent


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Streptococcus agalactiae CCUG 47293

ncbi_submitter: The J. Craig Venter Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: ammonia-oxidizing enrichment culture

ncbi_organism_name: Candidatus Thermoflexus japonica

ncbi_submitter: Japan Agency for Marine-Earth Science and Technology


ncbi_submitter: FDA/CDC


ncbi_submitter: Ministry of Agriculture and Food, Government of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bovismorbificans


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp. AF37-5

ncbi_submitter: BGI


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Stanford University


ncbi_country: Germany: Lower Saxony

ncbi_isolation_source: anoxic marine sediment

ncbi_organism_name: Desulfonema limicola

ncbi_submitter: Carl von Ossietzky University of Oldenburg


ncbi_country: USA: Bethesda

ncbi_isolation_source: goldfish aquarium

ncbi_organism_name: Kocuria rosea

ncbi_submitter: University of New Hampshire-Manchester

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Mycoplasmopsis felis

ncbi_submitter: University of Guelph


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Liverpool


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Lacinutrix sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jiangsu; Suzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_strain_identifiers: A

ncbi_submitter: Nanjing university


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Mesotoga prima

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Minnesota

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University of Minnesota


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: Wound/Abscess

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: Carson; CA

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Streptomyces sp. NPDC048436

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: uncultured Chitinophagales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;x__environmental samples;s__uncultured Chitinophagales bacterium


ncbi_organism_name: Photorhabdus sp. RM126S

ncbi_submitter: University of Neuchatel


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kiambu


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Irkutsk Plague Control Research Institute of Siberia and Far East


ncbi_organism_name: Candidatus Spechtbacterales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;o__Candidatus Spechtbacterales;x__unclassified Candidatus Spechtbacterales;s__Candidatus Spechtbacterales bacterium


ncbi_organism_name: uncultured Chitinophaga sp.


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Copenhagen


ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Lacipirellulaceae bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: Sediminicola sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Salmonella sp. NW83

ncbi_submitter: Sichuan University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Shanghai Jiahui International Hospital


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Ensifer sp. 4252

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universita Politecnica delle Marche


ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Houston Methodist


ncbi_organism_name: Streptomyces sp. NPDC059949

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Odoribacter splanchnicus


ncbi_organism_name: uncultured Flavitalea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 15m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Opitutia bacterium UBA1513

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__unclassified Opitutia;s__Opitutia bacterium UBA1513


ncbi_country: USA: MD

ncbi_isolation_source: Baby Wipes

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: UTHSC/McGovern Medical School


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kalmar county hospital


ncbi_country: Chile: Atacama

ncbi_isolation_source: Altiplano of Northern Chile

ncbi_organism_name: Nitrincola sp. A-D6

ncbi_submitter: Universidad de Santiago de Chile


ncbi_assembly_name: Rumen uncultured genome RUG134

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: tundra soil

ncbi_organism_name: uncultured Xanthobacteraceae bacterium

ncbi_submitter: University of Helsinki


ncbi_country: China: Suzhou

ncbi_organism_name: Anaerostipes sp. MSJ-23

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_organism_name: Streptomyces sp. NPDC048110


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Republic of Dagestan

ncbi_isolation_source: Bread with condensed milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: marine metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Porphyromonas canoris

ncbi_submitter: UC Davis


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Denmark: Damhusaen

ncbi_isolation_source: activated sludge from Damh_18-Q3-R51-60

ncbi_organism_name: bacterium

ncbi_submitter: Aalborg University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: gut

ncbi_organism_name: Micrococcaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University College Dublin


ncbi_organism_name: Paenibacillus sp. SI92

ncbi_submitter: State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan


ncbi_country: Peru

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Morganella morganii

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: USA: Michigan; Ingham

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Michigan State University


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 149 (4-4451880)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 149 (4-4451880)


ncbi_country: Pacific Ocean: near Hawaii

ncbi_isolation_source: sea water

ncbi_organism_name: Vibrio sp. HI00D65

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut

ncbi_organism_name: Oscillibacter sp. ER4

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Japan: Hokkaido; Lake Harutori

ncbi_isolation_source: lake water

ncbi_organism_name: Mariniplasma anaerobium

ncbi_submitter: Institute of Low Temperature Science, Hokkaido University


ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Germany

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium;s__Flavobacterium subsaxonicum;x__Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790


ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: Tissue

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_assembly_name: LM07416 assembly

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Russia: North Ossetia

ncbi_isolation_source: cheese starter

ncbi_organism_name: Lentilactobacillus sp. TOM.63

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: N


ncbi_country: Panama: Boquisco

ncbi_isolation_source: termite gut

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Puniceicoccaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_organism_name: Chthoniobacterales bacterium


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Indian Ocean

ncbi_isolation_source: deep-sea hydrothermal vent

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: HKUST


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate stock biobioreactor

ncbi_organism_name: Alphaproteobacteria bacterium 40-19

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile CD104

ncbi_submitter: Institute for Genome Sciences


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces bambusae

ncbi_submitter: Mahidol University, Faculty of Public Health


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Streptomyces sp. NPDC048550

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Russia: Moscow region

ncbi_isolation_source: spoiled milk

ncbi_organism_name: Enterococcus mundtii

ncbi_submitter: SRCAMB


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Exiguobacterium sp. UBA4960

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. UBA4960


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: department of plant and microbial biology


ncbi_country: Colombia: Cali

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_isolation_source: clinical

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Mycobacterium tuberculosis KT-0053

ncbi_submitter: Broad Institute


ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: China: Hebei

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: USA: Massachusetts

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Corynebacterium stationis


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Pau University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Hanzhong Central Hospital


ncbi_organism_name: Nitriliruptorales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Fructobacillus cardui

ncbi_submitter: ghent university


ncbi_country: USA: Durham; NC

ncbi_isolation_source: nasal swab

ncbi_organism_name: Corynebacterium accolens

ncbi_submitter: Duke University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a a 3.0 um filter and then through a 0.2 um filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium CG1_02_54_53


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: United Kingdom Health Security Agency


ncbi_country: Canada

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Bronch

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: University of Pittsburgh


ncbi_country: Spain: Catalunya

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_country: China: Liaoning

ncbi_isolation_source: nodule

ncbi_organism_name: Bradyrhizobium sp. CCBAU 11430

ncbi_strain_identifiers: CCBAU 11430


ncbi_country: Madagascar: Sud-Ouest Pointe Barrow

ncbi_isolation_source: gill

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Candidatus Thiodiazotropha;s__Candidatus Thiodiazotropha sp. (ex Dulcina madagascariensis)


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Australia: Five Islands Nature Reserve; NSW

ncbi_isolation_source: cloacal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: OUTBREAK


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Rhodobacter sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: [Clostridium] scindens

ncbi_submitter: EMG


ncbi_country: France: Montiers

ncbi_isolation_source: Microscale soil grain

ncbi_organism_name: Streptomyces sp. RLB3-6

ncbi_submitter: Universite de Lorraine - Institut National de la Recherche Agronomique


ncbi_country: Kenya: Talek

ncbi_isolation_source: termite gut

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Viet Nam:Hanoi

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Sulfitobacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: water

ncbi_organism_name: Flavobacteriales bacterium UBA3135

ncbi_submitter: University of Queensland


ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Austria

ncbi_isolation_source: raw milk

ncbi_organism_name: Clostridium tyrobutyricum

ncbi_submitter: University of Natural Resources and Life Sciences Vienna (Universitaet fuer Bodenkultur Wien)


ncbi_country: China: Beijing

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: China CDC


ncbi_country: USA: TN

ncbi_isolation_source: clinical

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. 87-0208


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Thermodesulfobacteriaceae bacterium


ncbi_organism_name: uncultured Veillonella sp.


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Hangzhou

ncbi_isolation_source: rumen content from lactating cow

ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: zhejiang university


ncbi_isolation_source: sponge

ncbi_organism_name: Spongiivirga citrea

ncbi_submitter: Guangxi University


ncbi_country: China: Harbin

ncbi_isolation_source: soybean root

ncbi_organism_name: Jidongwangia harbinensis

ncbi_submitter: School od life science


ncbi_country: China: Shandong

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Liaocheng University


ncbi_country: Mexico: CDMX

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: INSTITUTO MEXICANO DEL SEGURO SOCIAL


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Chthoniobacter flavus

ncbi_submitter: University Duisburg-Essen


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: BLOOD


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: EMG


ncbi_isolation_source: bodily fluid

ncbi_organism_name: Histophilus somni

ncbi_submitter: USDA-ARS-USMARC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: China: Fujian

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH12069

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Altavista; VA

ncbi_isolation_source: PCB contaminated wastewater treatment lagoon sediment microcosms

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: University of Iowa


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nitratireductor indicus

ncbi_submitter: Shanghai JiaoTong University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Acidaminococcus intestini


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: Lomas Bayas Desert Soil Beside Boulder

ncbi_organism_name: Rubrobacter sp.

ncbi_submitter: University of Duisburg-Essen


ncbi_country: China: Guangdong

ncbi_isolation_source: drainage fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Thailand: Phitsanulok

ncbi_organism_name: Escherichia coli

ncbi_submitter: Cardiff University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Arsukibacterium sp. UBA3155

ncbi_submitter: University of Queensland


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Segatella salivae

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Mycobacterium sp. RTGN3

ncbi_submitter: Newcastle University


ncbi_country: France

ncbi_isolation_source: Left thigh abcess

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: EMG


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Brazil

ncbi_isolation_source: bulk soil from sugarcane field

ncbi_organism_name: Pseudomonas sp. B30(2017)

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Shenzhen

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: BGI


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: Geneva University Hospitals


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Acetobacter senegalensis DSM 18889

ncbi_submitter: Tokyo University of Agriculture


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Formosa sp.

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Jeonbuk National University


ncbi_country: Spain

ncbi_isolation_source: tonsil swab

ncbi_organism_name: Corynebacterium phoceense

ncbi_submitter: Wageningen University and Research


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: United Kingdom: Gloucestershire

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in a breeding trial plot

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Mahidol University


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agriculture University


ncbi_country: China

ncbi_isolation_source: sewage

ncbi_organism_name: Aeromonas sp. QDB20

ncbi_submitter: Soochow University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC007920

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD9054-2

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_country: Norway: Viken

ncbi_isolation_source: feces

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrithrix sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Duesseldorf


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: National Research Council Canada


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Phototrophicaceae bacterium


ncbi_organism_name: Kitasatospora saccharophila

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Joint Vietnam-Russia Tropical Science and Technology Research Center


ncbi_submitter: Yangzhou University


ncbi_submitter: Idaho Bureau of Laboratories


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: UANTW

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Segatella hominis


ncbi_organism_name: Xanthobacter sp. V7C-1B

ncbi_submitter: Harvard Medical School


ncbi_organism_name: Bacillus cereus group sp. BCN162

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BCN162


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Vibrio genomosp. F10

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Rubrivirga sp.


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-3640

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: cold seep

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Nordella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Staphylococcus nepalensis

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID UWx21192

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay water

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Clemson University


ncbi_country: Switzerland: Bern

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Inselspital, Bern University Hospital


ncbi_organism_name: Faecousia sp.


ncbi_country: Ecuador: Quito

ncbi_isolation_source: blood

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Zurita & Zurita Laboratorios


ncbi_country: Reunion

ncbi_isolation_source: Lichen

ncbi_organism_name: Amycolatopsis sp. CA-126428

ncbi_submitter: Fundacion MEDINA


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: Texas

ncbi_isolation_source: respiratory

ncbi_submitter: Texas A&M University


ncbi_organism_name: Ralstonia mannitolilytica

ncbi_submitter: LM-UGent


ncbi_country: China: Guangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sun Yat-sen University


ncbi_country: Denmark

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Tissierellales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Treponema sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: China: Anhui

ncbi_isolation_source: chicken manure

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Comamonas thiooxydans

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Germany

ncbi_isolation_source: fetus

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: Water from hospital environment

ncbi_organism_name: Burkholderia contaminans


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Paramuribaculum sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Vibrio sp. V12_P9A6T4

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Eubacterium plexicaudatum

ncbi_submitter: EMG


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Marmoricola sp.

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Danish Veterinary Consortium and AniCon


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: France

ncbi_organism_name: Enterobacter cloacae complex sp. P21C

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. P21C


ncbi_organism_name: Streptomyces ziwulingensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: Italy

ncbi_organism_name: Pantoea sp. AG702

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Chicago


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Peru


ncbi_country: Netherlands: Leiden

ncbi_isolation_source: Clinical specimen

ncbi_organism_name: Acinetobacter vivianii

ncbi_strain_identifiers: NIPH 2168

ncbi_submitter: Broad Institute


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_organism_name: Lonsdalea populi

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_submitter: Universidad Complutense de Madrid


ncbi_organism_name: Roseovarius indicus

ncbi_submitter: Xiamen University


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: Portland State University


ncbi_country: Pakistan: Cholistan Desert

ncbi_isolation_source: soil

ncbi_organism_name: Arthrobacter mobilis

ncbi_submitter: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences


ncbi_country: China: Beijing

ncbi_isolation_source: throat swab

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Affiliated Hospital of Academy of Military Medical Science


ncbi_country: China: Guangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: ST11 CRKP10

ncbi_submitter: PLA Southern Theater General Hospital


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CSIR-NEERI


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: pig farm

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Enorma massiliensis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Brazil: Belo Horizonte

ncbi_isolation_source: blood

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_organism_name: Pseudolactococcus plantarum NBRC 100936

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Thermovirgaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Oklahoma

ncbi_isolation_source: produced fluids from hydraulically fractured shales

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: The Ohio State University


ncbi_organism_name: Streptococcus pluranimalium

ncbi_submitter: The Centre for Infectious Disease Genomics and One Health, Simon Fraser University


ncbi_country: Mexico: Guaymas Basin

ncbi_isolation_source: marine sediment

ncbi_organism_name: Candidatus Zipacnadia bacterium

ncbi_submitter: University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;c__Candidatus Zipacnadia;x__unclassified Candidatus Zipacnadia;s__Candidatus Zipacnadia bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Houston


ncbi_organism_name: Lactobacillus delbrueckii subsp. allosunkii


ncbi_organism_name: Seleniivibrio woodruffii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Sweden: Uppsala

ncbi_isolation_source: Softened Water

ncbi_organism_name: Mycobacteroides franklinii

ncbi_submitter: Uppsala University


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Levyibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levyibacteriota bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Microcystis aeruginosa

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: EMG


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Intestinibacter sp.

ncbi_submitter: AAFC


ncbi_country: Algeria: Constantine

ncbi_isolation_source: urine

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: MEPHI, IRD, APHM, IHU-Mediterranee Infection, Marseille, France


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Macellibacteroides fermentans

ncbi_submitter: University of Iowa


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Pararhodobacter marinus

ncbi_submitter: Xiamen University


ncbi_country: USA

ncbi_isolation_source: Wound

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Denmark

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: NIZO food research


ncbi_organism_name: Leucobacter sp.

ncbi_submitter: Max Planck Institute for Biology


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lejia lagoon

ncbi_isolation_source: soil alkaline flat

ncbi_organism_name: Spirochaeta sp.

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_assembly_name: Salmonella enterica CVM N43821 v1.0

ncbi_country: USA: GA

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Thompson


ncbi_country: USA: CO

ncbi_organism_name: Bordetella pertussis


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Denmark: Haderslev

ncbi_isolation_source: activated sludge from Hade_18-Q3-R52-61

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Nocardia globerula

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Zhejiang

ncbi_isolation_source: Ascites

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acetobacter indonesiensis

ncbi_strain_identifiers: C

ncbi_submitter: Princeton University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Hydrothermal Plume

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Germany

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Federal University of Minas Gerais


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_isolation_source: Poultry meat

ncbi_organism_name: Escherichia coli B

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_organism_name: Shewanella mangrovisoli

ncbi_submitter: Soochow University


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Monash University


ncbi_country: China

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Nanjing Drum Tower Hospital, the Affiliated Hospital of Nanjing University Medical School


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_assembly_name: Rumen uncultured genome RUG14169

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: South Africa: King Dinuzulu Hospital

ncbi_submitter: Broad Institute


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Pauljensenia sp. UMB0895

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Centro de Astrobiologia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_submitter: University of Trento


ncbi_country: Spain: Catalunya

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_country: Japan: Ehime

ncbi_isolation_source: Grain (Oryza sativa)

ncbi_organism_name: Burkholderia glumae

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Blautia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: South Korea

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Yonsei university college of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: surface of crustose coralline alga

ncbi_organism_name: Pseudoalteromonas sp. J010

ncbi_submitter: The Forsyth Institute


ncbi_organism_name: Tidjanibacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_isolation_source: groundwater

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Algoriphagus persicinus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_submitter: UNIVERSITY HOSPITAL TUEBINGEN


ncbi_country: Paraguay

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Mexico

ncbi_isolation_source: Nasopharyngeal

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_country: USA

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine


ncbi_country: India: Chennai

ncbi_isolation_source: Seeds

ncbi_organism_name: Brachybacterium squillarum

ncbi_submitter: Rochester Institute of Technology


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-347-L19

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: UTI

ncbi_organism_name: Pseudomonas aeruginosa JJ692

ncbi_submitter: Broad Institute


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Portugal: Lisbon

ncbi_isolation_source: wastewater

ncbi_organism_name: Chromobacterium rhizoryzae

ncbi_submitter: Instituto de Biologia Experimental e Tecnologica


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: India

ncbi_submitter: JSS Academy of Higher Education & Research


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Neisseria zoodegmatis

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolate: SHTPB

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Malaysia

ncbi_organism_name: Bacillus thuringiensis serovar pahangi

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar pahangi


ncbi_country: Nigeria: Ibadan

ncbi_isolation_source: water from electronic waste dumpsite

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Ibadan, Nigeria


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_country: USA: Michigan

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_isolation_source: wound vulva

ncbi_organism_name: Enterococcus sp. HMSC065H12

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: China

ncbi_isolation_source: urine

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_organism_name: Acetivibrio clariflavus

ncbi_submitter: Hofstra University


ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Thailand: Bangkok

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Kasetsart University


ncbi_country: Nigeria

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Cepheid


ncbi_organism_name: Bartonella grahamii subsp. shimonis

ncbi_submitter: Military Health Institute


ncbi_organism_name: Tenuifilum sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Victivallaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA46

ncbi_submitter: Broad Institute


ncbi_submitter: National University Of The Inner Mongol


ncbi_country: China: Shenzhen

ncbi_isolation_source: environmental

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: NY

ncbi_organism_name: Bordetella holmesii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: India: Tamil Nadu

ncbi_organism_name: Bacteroides clarus

ncbi_submitter: SAHMRI