ncbi_country: Spain: Canary islands

ncbi_isolation_source: root nodule

ncbi_organism_name: Bosea spartocytisi

ncbi_submitter: Universidad de La Laguna


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: EMG


ncbi_country: USA:New York; Riverdale

ncbi_isolation_source: household surface

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


gtdb_representative: t

ncbi_organism_name: Bifidobacterium favimelis

ncbi_refseq_category: reference genome

ncbi_submitter: Key Laboratory of Dairy Biotechnology and engineering

ncbi_type_material_designation: assembly from type material


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Aureimonas sp. SA4125

ncbi_submitter: Laboratory of Extremophiles, Department of Science and Engineering for Sustainable Innovation, Faculty of Science and Engineering, Soka University


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Colorado State University


gtdb_type_species_of_genus: t

ncbi_organism_name: Pediococcus damnosus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Pectobacterium carotovorum subsp. carotovorum

ncbi_strain_identifiers: NBRC 3830

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium estertheticum

ncbi_submitter: University of Zurich


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H65878

ncbi_submitter: Broad Institute


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Cardiff University School of Medicine


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Agathobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Clackamas County; Oregon

ncbi_organism_name: Rathayibacter sp. AY1G9

ncbi_submitter: Oregon State University


ncbi_isolation_source: caecum

ncbi_organism_name: Mediterraneibacter glycyrrhizinilyticus

ncbi_submitter: Veterinary Research Institute


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA

ncbi_isolation_source: tomato

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Universidade de Sao Paulo


ncbi_organism_name: Candidatus Krumholzibacteriia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;x__unclassified Candidatus Krumholzibacteriia;s__Candidatus Krumholzibacteriia bacterium


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: the intestinal of chicken

ncbi_organism_name: Paenibacillus sp. YPG26

ncbi_submitter: jilin university


ncbi_isolation_source: chicken carcass

ncbi_submitter: China National Center for Food Safety Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_organism_name: Oceanisphaera ostreae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: South Korea: Chungju

ncbi_isolation_source: freshwater

ncbi_organism_name: Sphingobacterium chungjuense

ncbi_submitter: Inha University


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Rakuno Gakuen University


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Biomin Research Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_country: Poland

ncbi_isolation_source: rectal swab

ncbi_submitter: National Institute of Public Health NIH - NRI


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Poultry Farm

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Germany

ncbi_isolation_source: joint

ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: Institute of Microbiology


ncbi_country: Paraguay: Villeta

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Mahidol University


ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Shandong First Medical University


ncbi_country: Canada: Waterloo

ncbi_isolation_source: water from a groundwater well adjacent to an active municipal landfill in Southern Ontario

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Weishan Lake

ncbi_isolation_source: soil

ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_assembly_name: freshwater MAG --- MJ-2014-D7_bin-225

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Holophagaceae bacterium


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Southwest Medical University


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Duisburg Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Agriculture and Agri-Food Canada/Agriculture et Agroalimentaire Canada


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Graduate School of Regional Development and Creativity, Utsunomiya University


ncbi_country: Ireland

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University College Cork


ncbi_country: Ireland: Country

ncbi_isolation_source: Marine sponge

ncbi_organism_name: Psychrobacter sp. 230


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Canada: Axel Heiberg Island

ncbi_isolation_source: Ice-wedge polygon

ncbi_organism_name: Curtobacterium flaccumfaciens

ncbi_submitter: Universite Laval


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab


ncbi_country: USA: DC

ncbi_isolation_source: Eye

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: US Food and Drug Administration


ncbi_country: Australia: New South Wales

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_organism_name: Bacillus sp. FSL L8-0186

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL L8-0186


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Pseudomonas sp.


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Hoylesella pleuritidis

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: vaginal/rectal

ncbi_organism_name: Staphylococcus sp. HMSC061C10

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_organism_name: Brucella anthropi

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_organism_name: Stutzerimonas urumqiensis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Salmonella enterica

ncbi_submitter: wenzhou Medical university


ncbi_country: China: Mudanjiang

ncbi_isolation_source: Rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Chinese academy of Agricultural sciences


ncbi_isolation_source: metagenome

ncbi_organism_name: Pseudacidovorax intermedius


ncbi_organism_name: Streptococcus pyogenes SSI-1

ncbi_submitter: Osaka Univ.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pyogenes;x__Streptococcus pyogenes serotype M3;x__Streptococcus pyogenes SSI-1


ncbi_country: USA: California

ncbi_strain_identifiers: UCI 3

ncbi_submitter: USDA-ARS


ncbi_country: Indonesia

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Neomegalonema sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus intestinalis


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Pennsylvania State University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Streptomyces sp. NRRL F-5135

ncbi_strain_identifiers: NRRL F-5135

ncbi_submitter: University of Illinois


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Adolfo Lutz


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter parvus;x__Acinetobacter parvus DSM 16617 = CIP 108168


ncbi_country: Brazil

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Atlantic Ocean: western flank of Mid-Atlantic Ridge (North Pond)

ncbi_isolation_source: marine sediment push core 14

ncbi_organism_name: Idiomarina abyssalis

ncbi_submitter: Dauphin Island Sea Lab


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: Terrestrial

ncbi_organism_name: Nostoc calcicola FACHB-3891

ncbi_submitter: South China Normal University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: Munida Microbial Observatory Time Series

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Corynebacterium sp. HMSC062A03

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: United Kingdom

ncbi_isolation_source: wheat rhizosphere from Bare Fallow land

ncbi_organism_name: Pseudomonas sp. BF-R-26

ncbi_submitter: Rothamsted Research


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Oxalobacteraceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile Y41

ncbi_submitter: Institute for Genome Sciences


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus mundtii

ncbi_submitter: Kyung Hee University


ncbi_country: USA: KS

ncbi_isolation_source: Beef Cows

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: CVM N59599F

ncbi_submitter: FDA


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Lactobacillus helsingborgensis


ncbi_organism_name: Faecalibaculum rodentium


ncbi_country: Russia: Moscow

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: SRCAMB


ncbi_isolation_source: Clone isolated from the evolution experiment described in Ketola et al. 2013 (doi: 10.1111/evo.12148)

ncbi_submitter: UNIVERSITY OF JYVASKYLA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;s__Serratia marcescens;x__Serratia marcescens subsp. marcescens ATCC 13880


ncbi_strain_identifiers: NCPPB 4379

ncbi_submitter: University of Exeter

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas vasicola;x__Xanthomonas vasicola pv. musacearum;x__Xanthomonas vasicola pv. musacearum NCPPB 4379


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Singapore

ncbi_isolation_source: Lettuce farm 5

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Brunei


ncbi_country: South Korea

ncbi_isolation_source: Tidal flat sediment

ncbi_organism_name: Cognaticolwellia aestuarii

ncbi_submitter: Shandong University at Weihai


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Ruegeria profundi

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Desulfuromonadaceae bacterium UBA6124

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroides stercoris


ncbi_organism_name: Corynebacterium sp. HFH0082

ncbi_submitter: Broad Institute


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Australia: Port Phillip Bay

ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Rikenella sp.


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Fibrobacter sp.


ncbi_country: USA: International Space Station

ncbi_isolation_source: Aluminum 1

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Kluyvera ascorbata

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Xylanibacter rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 1284

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: Kenya

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Japan

ncbi_genome_category: derived from single cell

ncbi_isolation_source: This BioSample is a composited single-cell amplified genome (CoSAG) obtained by integrating the following multiple MDA SAG BioSamples: SAMN23498472; SAMN24966436; SAMN23498473; SAMN24966437; SAMN23498474; SAMN23498475

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: bitBiome, Inc.


ncbi_isolation_source: CSF


ncbi_country: Sweden

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 3632-1


ncbi_organism_name: Helicobacter pylori SA168C

ncbi_submitter: MHH


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptomyces europaeiscabiei

ncbi_submitter: Oregon State University


ncbi_isolation_source: nose swab

ncbi_organism_name: Erysipelothrix anatis

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Aeromonas jandaei

ncbi_submitter: Nanjing Agriculture University


ncbi_country: USA: Ohio

ncbi_isolation_source: hospital shower hose biofilm

ncbi_organism_name: Blastomonas sp. CCH4-D12

ncbi_submitter: U.S. Environmental Protection Agency


ncbi_country: China: Nanjing

ncbi_isolation_source: blood

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_country: Italy

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: Polytechnic University of Marche Medical School


ncbi_isolation_source: derived from the strain Pseudomonas aeruginosa ATCC 27853

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Spain

ncbi_submitter: Hospital 12 de Octubre


ncbi_organism_name: uncultured Idiomarinaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Agathobaculum sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Spain: Madrid

ncbi_isolation_source: healthy skin

ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Aarhus University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Balneolaceae bacterium UBA5060

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;x__unclassified Balneolaceae;s__Balneolaceae bacterium UBA5060


ncbi_country: China: Guangzhou

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sri Ramachandra Institute of Higher Education and Research


ncbi_country: Antarctica: Mackay Glacier regions; Mount Seuss

ncbi_isolation_source: mineral soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Brazil: Rio de Janeiro; Parnaso

ncbi_isolation_source: soil

ncbi_organism_name: Mycolicibacterium sp. CBMA 226

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_organism_name: Pseudomonas sp. SJZ073

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Filifactor sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Guangdong

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ICMR-National Institute of Occupational Health


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Chthoniobacter flavus

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Paenibacillus phyllosphaerae

ncbi_strain_identifiers: CECT 5862


ncbi_organism_name: Selenobaculum gibii

ncbi_submitter: Seoul National University


ncbi_country: USA: Texas; Corpus Christi

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Photobacterium damselae

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: University of Chicago


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: University of Parma


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Bosea vestrisii

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Germany

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay water

ncbi_submitter: Clemson University


ncbi_assembly_name: freshwater MAG --- AM-2014-D6_bin-581

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Accumulibacter regalis

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;s__Candidatus Accumulibacter regalis


ncbi_organism_name: Paraburkholderia sp. A1BS-2L

ncbi_submitter: KU Leuven


ncbi_submitter: Washington University in Saint Louis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Acidobacteriaceae bacterium


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: The Ohio State University


ncbi_organism_name: Neobacillus sp. 211

ncbi_submitter: Fundacion Universitaria San Pablo CEU


ncbi_organism_name: Salmonella sp. NW1251

ncbi_submitter: Sichuan University


ncbi_organism_name: Streptomyces mutabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Xenorhabdus thuongxuanensis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_assembly_level: Chromosome

ncbi_organism_name: Plantactinospora sp. WMMC1484

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: CNRS UMR6197


ncbi_organism_name: uncultured Subdoligranulum sp.

ncbi_submitter: EMG


ncbi_organism_name: Finegoldia magna


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Lysinibacillus sp. NPDC096259


ncbi_organism_name: Brevibacterium otitidis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Salmonella sp. CQ24WZ0613SAL

ncbi_submitter: Wanzhou CDC


ncbi_organism_name: uncultured Isosphaeraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Neobacillus sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Pseudomonas sp. DCA-1

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: uncultured Acidibacter sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;g__Acidibacter;x__environmental samples;s__uncultured Acidibacter sp.


ncbi_organism_name: Ruminococcus callidus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Shandong University


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Northwestern University


ncbi_assembly_name: freshwater MAG --- Umea1p4_bin-199

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_assembly_name: freshwater MAG --- Loc090721-8m_bin-949

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_isolation_source: laboratory-scale bioreactor denitrification and anammox communities

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: NanJing University


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-409-B05

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Japan

ncbi_isolation_source: pericardial effusion

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: Toho university


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: Geneva University Hospitals


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Leuconostoc citreum


ncbi_country: Italy

ncbi_isolation_source: cervico-uterine swab

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Istituto Zooprofilattico di Puglia e Basilicata

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_country: USA: Minnesota

ncbi_isolation_source: Right cheek

ncbi_organism_name: Aggregatibacter aphrophilus

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Medicines Directorate


ncbi_isolation_source: Faeces


ncbi_isolation_source: Caecum


ncbi_country: China: Chengdu

ncbi_isolation_source: feces

ncbi_organism_name: Hominibacterium faecale

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: Upshore outside the box

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Basel


ncbi_isolation_source: marine sediment

ncbi_organism_name: Vibrio sp. J1-1

ncbi_submitter: shandong university


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: Puerto Rico: VEGA BAJA

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: Northern Arizona University


ncbi_country: Netherlands

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus delphini

ncbi_submitter: Utrecht University


ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: New York; NY

ncbi_isolation_source: blood

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_strain_identifiers: Patient 1;ISMMS2

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: PunctUrinee Fluid

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of West London


ncbi_country: Canada: Lacombe

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: AAFC


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Kentucky

ncbi_isolation_source: Infected agricultural plant

ncbi_organism_name: Erwinia tracheiphila

ncbi_strain_identifiers: BHKY

ncbi_submitter: Iowa State University


ncbi_organism_name: Listeria monocytogenes M7


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Ureaplasma sp.

ncbi_submitter: EMG


ncbi_organism_name: Limosilactobacillus vaginalis


ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Lentilactobacillus otakiensis

ncbi_submitter: Food Research Institute of National Agricultural and Food Center


ncbi_organism_name: Arcticibacter tournemirensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Burkholderiales bacterium UBA7377

ncbi_submitter: University of Queensland


ncbi_country: China: Beijing

ncbi_isolation_source: wound secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese PLA General Hospital


ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Escherichia coli

ncbi_submitter: Division of Infection and Immunity, International Institute for Zoonosis Control, Hokkaido University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Methylovirgula sp.

ncbi_submitter: National University of Singapore


ncbi_organism_name: Nocardia paucivorans NBRC 100373

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: saliva

ncbi_organism_name: TM7 phylum sp. oral taxon 352

ncbi_submitter: Oak Ridge National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__TM7 phylum sp. oral taxon 352


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Candidatus Obscuribacterales bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;x__unclassified Candidatus Obscuribacterales;s__Candidatus Obscuribacterales bacterium


ncbi_assembly_name: Rumen uncultured genome RUG14257

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. S07E 245

ncbi_submitter: Bowling Green State University


ncbi_isolation_source: Colon

ncbi_organism_name: Duncaniella muris


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: urine

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: URMITE


ncbi_country: China: Zhejiang

ncbi_isolation_source: fecal material of healthy human

ncbi_organism_name: Pediococcus pentosaceus CGMCC 7049

ncbi_strain_identifiers: CGMCC 7049

ncbi_submitter: State Key Laboratory for Diagnosis and Treatment of Infectious Disease, The First Affiliated Hospital, Zhejiang University


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium pseudodiphtheriticum

ncbi_submitter: Duke University


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_country: China: Hubei Province; Huangshi City

ncbi_isolation_source: soil sample from arsenic pollution region

ncbi_organism_name: Agrobacterium sp. TS45

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Center for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;x__unclassified Klebsiella pneumoniae complex;s__Klebsiella pneumoniae complex sp. WS1009


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_submitter: Research Institute for Tropical Medicine


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Candidatus Peribacteria bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium


ncbi_country: Sweden

ncbi_submitter: Max von Pettenkofer-Institute


ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio jasicida

ncbi_strain_identifiers: CECT 7692

ncbi_submitter: Academia Sinica

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: uncultured Escherichia sp.


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Segatella baroniae

ncbi_submitter: EMG


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sao Paulo


ncbi_country: Arctic Ocean

ncbi_isolation_source: marine sediment

ncbi_organism_name: Microbacterium sp. KRD172

ncbi_submitter: Robert Gordon University


ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_assembly_name: Campylobacter coli CVM N462 v1.0

ncbi_country: USA: NM

ncbi_isolation_source: Chicken Breast

ncbi_organism_name: Campylobacter coli

ncbi_strain_identifiers: CVM N462

ncbi_submitter: FDA


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Fermentimonas sp.

ncbi_submitter: University of British Columbia


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Chile: Region del Maule; Estero Los Robles

ncbi_isolation_source: termite gut

ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China: Changchun

ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: Jilin Agricultural University


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidisphaera sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus suis

ncbi_submitter: college of veterinary medicine


ncbi_organism_name: Euzebyaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Gemmiger sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_organism_name: Pseudomonas mosselii

ncbi_submitter: University of Florida


ncbi_country: USA

ncbi_submitter: Broad Institute


ncbi_organism_name: Ornithinibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Leptolyngbyaceae cyanobacterium

ncbi_submitter: CSIR-Centre for Cellular and Molecular Biology


ncbi_country: China: Ningxia

ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas orientalis

ncbi_submitter: Cornell University


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Maribacter flavus

ncbi_submitter: Shantou University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Duncaniella muris


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater under a natural surface slick

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Candidatus Caccovicinus merdipullorum

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Caccovicinus;s__Candidatus Caccovicinus merdipullorum


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0478


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: anammox sludge collected from membrane bioreactor

ncbi_organism_name: Candidatus Jettenia caeni

ncbi_submitter: Water quality control, Division of Environmental Engineering, Faculty of Engineering, Department of civil engineering, Hokkaido university

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Jettenia;s__Candidatus Jettenia caeni

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Jettenia;s__Candidatus Jettenia caeni


ncbi_organism_name: Streptomonospora salina

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Vampirovibrio sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Wound/Abscess

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_isolation_source: oral cavity

ncbi_organism_name: Aggregatibacter segnis ATCC 33393

ncbi_submitter: Baylor College of Medicine


ncbi_country: China: Shandong

ncbi_isolation_source: anal swabs from commercial chicken farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: China: Chengdu

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_organism_name: Xanthomonas arboricola


ncbi_organism_name: Algoriella sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Lachnospira sp. UBA4342

ncbi_submitter: University of Queensland


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Germany

ncbi_isolation_source: starter culture

ncbi_organism_name: Latilactobacillus curvatus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: China: Shanghai

ncbi_isolation_source: Chicken liver

ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: Infant 1 DOL 23 oral

ncbi_organism_name: Haemophilus parainfluenzae


ncbi_organism_name: Blautia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus sonorensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Austria

ncbi_submitter: Institute of Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: USA: Ohio

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Mycolicibacterium smegmatis

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: urine

ncbi_submitter: College of Life Science


ncbi_organism_name: Xanthomonas citri pv. aurantifolii

ncbi_submitter: nivip

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. aurantifolii


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mogibacterium timidum

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Megasphaera sp.


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Candidatus Pacebacteria bacterium CG_4_9_14_3_um_filter_40_12


ncbi_isolation_source: Brackish lake

ncbi_organism_name: Microcystis aeruginosa

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Georgia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Instituto de Higiene e Medicina Tropical - Universidade Nova de Lisboa


ncbi_isolation_source: subcutaneous flap

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SRCAMB


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Legionellales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_assembly_name: IMG-taxon 2593339259 annotated assembly

ncbi_organism_name: Mycolicibacterium fluoranthenivorans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: California; Middletown

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_submitter: University of Galway


ncbi_organism_name: uncultured Polaromonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Atlantic Ocean

ncbi_isolation_source: deep sea water

ncbi_organism_name: Roseovarius sp. 22II1-1F6A

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Dendrolimus pini


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Vibrio celticus

ncbi_strain_identifiers: CECT 7224

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University


ncbi_organism_name: uncultured Schaedlerella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Frankfurt


ncbi_country: China: Maanshan Magnetite Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: China: Dajiu Lake

ncbi_isolation_source: sediments

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: UNIVERSITY OF KWAZULU-NATAL


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Pilosibacter sp. HC1M1C21

ncbi_submitter: University of Rouen


ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: University of Padova


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Wuhan Polytechnic University


ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Aggregatimonas sp.


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Candidatus Altiarchaeales archaeon

ncbi_submitter: Institute of Deep-sea Science and Engineering

ncbi_taxonomy: d__Archaea;p__Candidatus Altarchaeota;c__Candidatus Altiarchaeia;o__Candidatus Altarchaeales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Archaea;x__Nanobdellati;p__Candidatus Altarchaeota;c__Candidatus Altiarchaeia;o__Candidatus Altarchaeales;x__unclassified Candidatus Altiarchaeales;s__Candidatus Altiarchaeales archaeon


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Thiocapsa sp. C3-3m

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Alistipes dispar

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Rhodoplanes sp.


ncbi_organism_name: Pseudomonas azerbaijanorientalis

ncbi_submitter: LMU Munich


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Teagasc


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus nitratireducens

ncbi_strain_identifiers: 179-B FCB NHS

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Bifidobacterium longum


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: uncultured Segnochrobactrum sp.


ncbi_organism_name: Coxiella-like endosymbiont

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: Odense

ncbi_isolation_source: Eye swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Odense University Hospital


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Candidatus Binatia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__environmental samples;s__uncultured Candidatus Binatia bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZLSLER


ncbi_country: USA: California; Calistoga

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Great Boiling Springs; Gerlach; Nevada

ncbi_isolation_source: top 1 cm of 70 C hot spring sediment

ncbi_organism_name: Thermoflexus hugenholtzii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_submitter: Environmental Microbiology Lab


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Hymenobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Hungateiclostridiaceae bacterium KB18

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: California; Lower Lake

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Spechtbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Spechtiibacteriota;x__unclassified Candidatus Spechtbacteria;s__Candidatus Spechtbacteria bacterium


ncbi_assembly_name: freshwater MAG --- I3_bin-011

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Balneolales bacterium


ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Spain: Rambla Salada; Murcia

ncbi_isolation_source: saline soil

ncbi_organism_name: Marinobacterium ramblicola

ncbi_submitter: University of Sevilla


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMBL-EBI


ncbi_country: Poland: Poznan

ncbi_isolation_source: clinical sample

ncbi_submitter: National Medicines Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: Duncaniella muris


ncbi_country: USA: Point Barrow; Alaska

ncbi_isolation_source: bottom of first year landfast sea ice

ncbi_organism_name: Psychrobacter sp. Urea-trap-20

ncbi_submitter: University of Alaska Fairbanks


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Shanghai Entry-Exit Inspection and Quarantine Bureau


ncbi_country: South Africa: Kwazulu Natal

ncbi_isolation_source: waste water

ncbi_organism_name: Ancylobacter aquaticus

ncbi_submitter: University of KwaZulu Natal


ncbi_country: China: Shenzhen

ncbi_organism_name: Ruminococcus sp. AM54-1NS

ncbi_submitter: BGI


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhizobium sp. Q54

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Sweden: Lund

ncbi_isolation_source: blood

ncbi_organism_name: Aerococcus mictus

ncbi_submitter: Region Zealand


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0362

ncbi_submitter: Broad Institute


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Lactobacillus paragasseri

ncbi_submitter: Loyola University Chicago


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Sphingorhabdus sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Anaerotignum sp.


ncbi_country: China: Sichuan

ncbi_isolation_source: swine farm

ncbi_submitter: sichuan university


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: skin

ncbi_organism_name: Macrococcus lamae

ncbi_submitter: Teagasc Food research


ncbi_organism_name: Nocardia exalbida NBRC 100660

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Nocardia;s__Nocardia exalbida;x__Nocardia exalbida NBRC 100660


ncbi_country: Poland: Grudziadz

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institiute


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Canada: Winnipeg

ncbi_isolation_source: finger

ncbi_organism_name: Eikenella corrodens

ncbi_submitter: Public Health Agency of Canada


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Sweden: Vastra Gotaland; Gothenburg

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: TAILORED-Treatment project


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: lake water

ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Candidatus Ornithomonoglobus sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Ornithomonoglobus;x__unclassified Candidatus Ornithomonoglobus;s__Candidatus Ornithomonoglobus sp.


ncbi_isolate: metabat2_XCR1_HOM_7864_bwa.21 MAG

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_strain_identifiers: metabat2_XCR1_HOM_7864_bwa.21 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: East China Normal University


ncbi_country: China: Zhejiang

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Department of Pharmacy, Shaoxing Hospital of Traditional Chinese Medicine Affiliated to Zhejiang Chi


ncbi_organism_name: uncultured Sangeribacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: PA

ncbi_isolation_source: spleen mouse

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Germany: Volcanic Eifel; Andernach

ncbi_isolation_source: groundwater from cold water geyser; filtered on 0.1um pore size filters

ncbi_organism_name: Xanthomonas sp.

ncbi_submitter: University Duisburg-Essen


ncbi_country: China

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hangzhou Medical University


ncbi_country: Poland: Warsaw

ncbi_isolation_source: clinical sample

ncbi_organism_name: Enterobacter hormaechei subsp. steigerwaltii

ncbi_submitter: National Medicines Institute


ncbi_country: France

ncbi_isolation_source: urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Mexico: Gulf of Mexico

ncbi_isolation_source: Synechococcus sp. WH 8007 enrichment culture from coastal seawater

ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: Mount Allison University


ncbi_assembly_name: Rumen uncultured genome RUG494

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Texas

ncbi_organism_name: Chryseobacterium sp. SORGH_AS_1048

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: WA; Canna

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. CA5

ncbi_submitter: Curtin University


ncbi_organism_name: Yoonia sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Butyricimonas faecihominis

ncbi_submitter: EMG


ncbi_country: Switzerland: Bern

ncbi_isolation_source: wound

ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: University of Bern


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_organism_name: Agathobaculum butyriciproducens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: Russia: Adygea republic; North Caucasus

ncbi_isolation_source: Plant nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: ARRIAM


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI


ncbi_country: Portugal: Penafiel

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: REQUIMTE-UCIBIO. Faculdade de Farmacia da Universidade do Porto.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Dialister sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Bifidobacterium subtile

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA: Minnesota

ncbi_isolation_source: Retail chicken meat

ncbi_submitter: United States Department of Agriculture


ncbi_organism_name: Solirubrobacteraceae bacterium


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome


ncbi_assembly_name: IMG-taxon 2617270884 annotated assembly

ncbi_organism_name: Ruegeria marina

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: ACFNH

ncbi_submitter: NHGRI/NIH


ncbi_country: Greenland: Nuuk fjord

ncbi_isolation_source: marine sediment after 5 days of incubation with lipid additions

ncbi_organism_name: Psychromonas sp.

ncbi_submitter: University of Vienna


ncbi_organism_name: Methylosinus sporium

ncbi_submitter: Korea Advanced Institute of Science and Technology


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: EPFL


ncbi_country: USA: VT

ncbi_isolation_source: dairy cow feces

ncbi_submitter: USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Vibrio gallaecicus

ncbi_strain_identifiers: CECT 7244

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: Romania: Targoviste

ncbi_isolation_source: clinical

ncbi_submitter: National Institute for Infectious Diseases "Matei Bals


ncbi_country: Norway

ncbi_isolation_source: Human

ncbi_organism_name: Brucella melitensis

ncbi_submitter: NORWEGIAN INSTITUTE OF PUBLIC HEALTH


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiaceae bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Shandong

ncbi_isolation_source: stool

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi C


ncbi_strain_identifiers: IFEC 24 RV

ncbi_submitter: NATIONAL VETERINARY RESEARCH INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Chester


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Lewinellaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: marine

ncbi_organism_name: Algoriphagus sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas pergaminensis

ncbi_submitter: Universidad San Pablo CEU


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_organism_name: Escherichia coli

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_organism_name: Halorhodospira neutriphila

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_isolation_source: water

ncbi_organism_name: Chryseobacterium indoltheticum

ncbi_submitter: Shandong First Medical University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Burkina Faso

ncbi_isolation_source: eggs

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_country: Taiwan: Penghu

ncbi_isolation_source: marine broth agar medium with sodium arsenite as selective compound

ncbi_organism_name: Vibrio sp. CyArs1

ncbi_submitter: Universidade de Aveiro


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: CRC AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Estonia

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_isolation_source: laboratory

ncbi_organism_name: Escherichia coli B

ncbi_submitter: New England Biolabs


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Brevundimonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Gilvibacter sp.


ncbi_country: USA: California

ncbi_isolation_source: leaf litter

ncbi_organism_name: Curtobacterium sp. MCPF17_003

ncbi_submitter: University of California, Irvine


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_assembly_name: freshwater MAG --- B4coas_bin-0933

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Oxalobacteraceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1026S

ncbi_submitter: Broad Institute


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions 0.1 micron filter; 10% subassembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Ryaniibacteriota;s__Candidatus Ryanbacteria bacterium RIFCSPHIGHO2_01_45_13


ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus 50

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus 50


ncbi_country: Kenya: Talek

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: India

ncbi_isolation_source: frozen ground yellowfin tuna

ncbi_submitter: US Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN001090


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Ammonium sulfate bioreactor

ncbi_organism_name: Devosia sp. 67-54


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: uncultured Algoriphagus sp.

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus sp. E5-112

ncbi_submitter: Institute of Marine Research


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1087


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Caldisericota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Caldisericota/Cryosericota group;p__Caldisericota;x__environmental samples;s__uncultured Caldisericota bacterium


ncbi_country: China: Gansu

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Disease Control and Prevention of Chinese PLA


ncbi_country: Netherlands: Groningen

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Medical Center Groningen


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides sp. MSK.17.76

ncbi_submitter: University of Chicago


ncbi_organism_name: Tabrizicola sp.

ncbi_submitter: Xiamen University


ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus simulans

ncbi_submitter: University of Bern


ncbi_country: Nigeria

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Igbinedion University Okada


ncbi_country: USA: Buffalo; NY

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: Arctic Ocean

ncbi_isolation_source: pack ice from Arctic seawater

ncbi_organism_name: Pseudoalteromonas sp. A2

ncbi_submitter: the First Institute of Ocenography, SOA


ncbi_country: China: Shanghai

ncbi_submitter: Shanghai Municipal Center for Disease Control & Prevention


ncbi_assembly_name: freshwater MAG --- Umea2p1_bin-1447

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: cecum

ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Quadram Institutte


ncbi_assembly_name: Rumen uncultured genome RUG13419

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolate: AOP13_A3_surf _bin _8

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_strain_identifiers: AOP13_A3_surf _bin _8

ncbi_submitter: Genoscope


ncbi_country: USA

ncbi_isolation_source: nasal swab

ncbi_organism_name: Corynebacterium pseudodiphtheriticum

ncbi_submitter: Baylor College of Medicine


ncbi_submitter: Universidad de Concepcion


ncbi_country: Arctic Ocean: Gakkel Ridge

ncbi_isolation_source: Loki non-amplified sample from Loki s castle hydrothermal vent sediment

ncbi_organism_name: Roseobacter sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Spain: Asturias

ncbi_organism_name: Bifidobacterium crudilactis

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Pseudomonas sp. SCT

ncbi_strain_identifiers: SCT

ncbi_submitter: Chiba University


ncbi_country: Kazakhstan: East-Kazakhstan

ncbi_isolation_source: tissue

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: National Center for Biotechnology


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: China Agriculture University


ncbi_organism_name: Streptomyces griseoaurantiacus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Turkey

ncbi_isolation_source: abdomen

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: JCVI


ncbi_country: China: Zhejiang

ncbi_isolation_source: farm environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_organism_name: Neisseria bergeri

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus sp. E5-9

ncbi_submitter: Institute of Marine Research


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 14 after weanning

ncbi_organism_name: bacterium

ncbi_submitter: University of Alberta


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: SPRUCE 122

ncbi_organism_name: Candidatus Dormibacteria bacterium

ncbi_strain_identifiers: SPRUCE 122

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;x__unclassified Candidatus Dormibacteria;s__Candidatus Dormibacteria bacterium


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Sichuan University


ncbi_organism_name: Neisseriaceae bacterium

ncbi_submitter: University of South Bohemia in Ceske Budejovice, Faculty of Science


ncbi_organism_name: uncultured Leptolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Renji Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Micromonospora zamorensis


ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Waltera sp.


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Streptomyces laurentii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: IMG-taxon 2636416174 annotated assembly

ncbi_organism_name: Bacillus sp. 71mf

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 71mf


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: hydrocarbon

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: University of Queensland


ncbi_submitter: Kansas State University


ncbi_country: China: Hubei; Yichang

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_strain_identifiers: YC

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Jinhua

ncbi_isolation_source: urine

ncbi_submitter: Jinhua Central Hospital


ncbi_organism_name: Serratia marcescens

ncbi_submitter: ICAR - Indian Agricultural Research Institute


ncbi_country: China: Nanjing

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing agticultural university


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;x__unclassified Spiroplasma;s__Spiroplasma endosymbiont of Aleiodes alternator


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_country: China: Jiangsu

ncbi_isolation_source: cloaca

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou University


ncbi_isolation_source: aquatic metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: BGI-Shenzhen


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Thiomargarita sp.

ncbi_submitter: University Duisburg-Essen


ncbi_country: Spain

ncbi_organism_name: Enterococcus faecium EnGen0008

ncbi_submitter: Broad Institute


ncbi_country: Germany

ncbi_isolation_source: Surface patient room

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: pre-capsular lymph node

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_country: USA: Lake Superior; Wisconsin

ncbi_isolation_source: freshwater

ncbi_organism_name: Shewanella sp. DW31

ncbi_submitter: Medical College of Wisconsin


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Washington

ncbi_isolation_source: stool

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: Chile

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: candidate division FCPU426 bacterium

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division FCPU426;s__candidate division FCPU426 bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Vreelandella venusta

ncbi_submitter: Universidad Autonoma Metropolitana. Lerma


ncbi_country: China: Ningbo

ncbi_isolation_source: sputum

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Washington


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Germany: Ellerhoop

ncbi_isolation_source: rhizosphere of apple plantlets grown in replant diseased soil

ncbi_organism_name: Rhodococcus pseudokoreensis

ncbi_submitter: Ordiamur


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Heyndrickxia coagulans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Streptomyces sp. NPDC006289

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Cleveland; OH

ncbi_organism_name: Helicobacter pylori Hp P-15b

ncbi_strain_identifiers: Hp P-15b

ncbi_submitter: Institute for Genome Sciences


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Shenzhen

ncbi_organism_name: Blautia sp. TF12-31AT

ncbi_submitter: BGI


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Candidatus Aminicenantaceae bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Aminicenantaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Aminicenantaceae;x__unclassified Candidatus Aminicenantaceae;s__Candidatus Aminicenantaceae bacterium


ncbi_country: China: Shanghai City

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Brevundimonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Marinimicrobium locisalis

ncbi_submitter: Ningbo University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Akkermansia sp.


ncbi_organism_name: Candidatus Ruminimicrobiellum ovillum

ncbi_submitter: University of Queensland


ncbi_country: China: Zhejiang

ncbi_isolation_source: pickled radish

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: National Institute for Biotechnology and Genetic Engineering (NIBGE)


ncbi_organism_name: Porticoccus sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities