ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Albany


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_assembly_name: Rumen uncultured genome RUG379

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


gtdb_representative: f

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Contig

ncbi_organism_name: Pedobacter nototheniae

ncbi_submitter: Branch for Bioresources of the Fraunhofer IME


ncbi_country: Australia: Sydney

ncbi_isolation_source: Freshwater Cyanobacterial Bloom

ncbi_organism_name: Cylindrospermopsis raciborskii CS-505

ncbi_submitter: Pontificia Universidad Catolica de Chile


ncbi_country: USA: Baltimore

ncbi_isolation_source: hospital; patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Johns Hopkins University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: environmental

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Roseibium sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: lake water

ncbi_organism_name: Bradyrhizobiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Dactylosporangium sp. NPDC049525

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_submitter: Makerere University


ncbi_country: China: Shanghai

ncbi_submitter: China Agricultural University


ncbi_submitter: Quadram Institutte


ncbi_organism_name: Arthrobacter pascens

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Massilia orientalis

ncbi_refseq_category: reference genome

ncbi_submitter: Yunnan University


ncbi_country: United Kingdom

ncbi_isolation_source: food

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_assembly_level: Complete Genome

ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_isolation_source: Caecum


ncbi_country: Denmark

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Halobacteroidaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: USA: Poamoho; Hawaii

ncbi_isolation_source: biochar-amended oxisol soil plot 4

ncbi_organism_name: Hamadaea sp.

ncbi_submitter: Arizona State University


ncbi_country: China

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Enterococcus sp. HMSC072H05

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: China: Guangzhou

ncbi_isolation_source: phage-resistant mutant

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: South China Sea institute of Oceanology, Chinese academy of sciences


ncbi_country: USA

ncbi_isolation_source: Stool sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: NIH/ NIDDK


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Thermoguttaceae bacterium


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Lachnoclostridium sp. 210928-DFI.6.3

ncbi_submitter: University of Chicago


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: India: Vellore

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sp. FC1764

ncbi_submitter: Christian Medical College


ncbi_country: North Sea

ncbi_isolation_source: coastal sea water column HE361-14 at a depth of 3m

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: biofilm from deap sea brine pool

ncbi_organism_name: Cloacimonetes bacterium TCS61

ncbi_submitter: Hong Kong University of Science And Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Cloacimonetes bacterium TCS61


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Durance river

ncbi_isolation_source: fresh water

ncbi_organism_name: Pectobacterium quasiaquaticum

ncbi_submitter: Sorbonne University


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Instituto de Biotecnologia, Universidad Nacional Autonoma de Mexico


ncbi_country: Denmark: Aalborg

ncbi_isolation_source: Enrichment reactor seeded with activated sludge

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Absconditibacteriota;x__unclassified Candidatus Absconditabacteria;s__candidate division SR1 bacterium Aalborg_AAW-1


ncbi_country: China:Qinghai province

ncbi_isolation_source: faecal of marmot

ncbi_organism_name: Microbacterium sp. cx-55

ncbi_submitter: China CDC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: China: Guangdong; Fankou

ncbi_organism_name: Moraxellaceae bacterium


ncbi_country: Australia

ncbi_organism_name: Burkholderia pseudomallei MSHR2053

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_isolation_source: kefir grains

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: South China Agricultural University


ncbi_country: Argentina

ncbi_organism_name: Xanthomonas vasicola pv. vasculorum

ncbi_submitter: Colorado State U


ncbi_isolation_source: lake water

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


gtdb_type_species_of_genus: t

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Arcanobacterium haemolyticum


ncbi_organism_name: Stenotrophomonas geniculata

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: China

ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_isolation_source: nasopharynx


ncbi_country: Lebanon

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: VRE 3

ncbi_submitter: Lebanese American University


ncbi_country: United Kingdom: Scotland; Edinburgh

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Edinburgh


ncbi_organism_name: Pseudomonas synxantha

ncbi_submitter: Biology Centre CAS


ncbi_country: Germany

ncbi_isolation_source: Stuhl

ncbi_organism_name: Morganella morganii

ncbi_submitter: SurvCARE


ncbi_organism_name: Stenotrophomonas pavanii

ncbi_submitter: Sichuan University


ncbi_country: Australia: Adelaide

ncbi_isolation_source: sinus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Adelaide Medical School


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Clostridium sp. CAG:1193

ncbi_submitter: DTU


ncbi_organism_name: Vibrio sp. B1FLJ16

ncbi_submitter: UMR 1253, INRA/Agrocampus


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptosporangiaceae bacterium


ncbi_country: USA: University of Georgia in Athens; GA

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; hindgut

ncbi_submitter: University of Georgia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium OttesenSCG-928-L14


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Sediminibacterium ginsengisoli


ncbi_isolation_source: Colon


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Shanghai


ncbi_isolation_source: subsurface water

ncbi_organism_name: Aeribacillus pallidus

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Palacky University Olomouc


ncbi_assembly_level: Chromosome

ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSITY OF EXETER


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Wuerzburg


ncbi_organism_name: uncultured Sorangium sp.


ncbi_organism_name: Chryseobacterium proteolyticum

ncbi_submitter: Univerisity of Fort Hare


ncbi_organism_name: uncultured Desulfobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces cyaneofuscatus

ncbi_submitter: University of Liege


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Candidatus Limiplasma sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;x__unclassified Candidatus Limiplasma;s__Candidatus Limiplasma sp.


ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: USDA-ARS


ncbi_organism_name: Dorea longicatena


ncbi_organism_name: Salmonella sp. SH14S956

ncbi_submitter: Zhejiang university


ncbi_organism_name: Dialister invisus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Streptomyces sp. NBC_01794

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Ructibacterium sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Medical City


ncbi_organism_name: Leptospirales bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Erciyes University


ncbi_organism_name: Salmonella sp. NW147

ncbi_submitter: Sichuan University


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Paenibacillus sp. RC82

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Desulfobaccales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Collinsella sp.


ncbi_organism_name: Achromobacter dolens

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured Salinivenus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Cetobacterium sp.


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: USA: Colorado

ncbi_isolation_source: produced fluids from hydraulically fractured shales DJB-3 day 1472

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: GenomeTrakr Project: Ohio Department of Agriculture | Animal Disease Diagnostic Laboratory


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Streptomyces sp. NPDC057387

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Anaerostipes sp.

ncbi_submitter: University of British Columbia


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: MAMI


ncbi_organism_name: uncultured Chloroflexus sp.


ncbi_organism_name: Dialister sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Brazil: Belo Horizonte

ncbi_isolation_source: Catheter tip

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: ACI 55

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: lake water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_organism_name: Algoriphagus sp.

ncbi_submitter: Clemson University


ncbi_organism_name: Miltoncostaeaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: USA: California

ncbi_isolation_source: unripe fruit

ncbi_organism_name: Fructilactobacillus florum 8D

ncbi_submitter: University of California, Davis


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Nitrosomonadaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Idiomarina sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: bovine brain

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: China: Guangxi

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Rutgers University


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas mosselii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolate: mankind

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_strain_identifiers: mankind

ncbi_submitter: GH St Louis-Lariboisiere


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Apple dumpster

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Cornell University


ncbi_country: Colombia: Bogota

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_country: Germany: Munich

ncbi_isolation_source: throat

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Chlorobiaceae bacterium


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_country: South Korea: Seoul

ncbi_organism_name: Blautia sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium sp. 4858

ncbi_submitter: URMITE


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_organism_name: Capnocytophaga sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Key laboratory of dairy biotechnology and engineering


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: Greece: Epirus

ncbi_isolation_source: raw sheep milk

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium AF75-08pH9A

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Methylobacterium organophilum

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Ligilactobacillus ruminis


ncbi_country: Tanzania: Arusha

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli 2-210-07_S1_C2

ncbi_submitter: IGS


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang university


ncbi_country: Ghana: Accra

ncbi_isolation_source: hospital

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Philippines: Los Banos

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Rhizobium sp. 11515TR

ncbi_submitter: University of Alberta


ncbi_country: China: Suzhou

ncbi_organism_name: Cellulomonas hominis

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae VAKPC280

ncbi_submitter: JCVI


ncbi_organism_name: Variovorax sp. KK3

ncbi_submitter: University of the Pacific


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Robert Koch Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Methylobacter oryzae

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: cystic fibrosis airways isolate

ncbi_organism_name: Pseudomonas aeruginosa 0C2E

ncbi_submitter: University Laval


ncbi_isolation_source: intestine

ncbi_organism_name: Myroides marinus

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Bacteroides caecimuris


ncbi_isolation_source: Caecum

ncbi_organism_name: Lactococcus lactis


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Center for industrialization of agriculture and livestock microorganisms

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: India: Tamil Nadu

ncbi_organism_name: Eshraghiella crossota

ncbi_submitter: SAHMRI


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: unknown

ncbi_organism_name: Ligilactobacillus murinus


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_organism_name: Patiriisocius sp.

ncbi_submitter: University of East Anglia


ncbi_isolation_source: hydrocarbon

ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Bacillus cereus MSX-A12

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus MSX-A12


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Children's Hospital Affiliated to Shandong University


ncbi_organism_name: Escherichia coli 5412

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: China: Shandong Province

ncbi_organism_name: Corynebacterium lujinxingii

ncbi_submitter: China CDC


ncbi_country: United Kingdom: York

ncbi_isolation_source: Independently evolved isolated clone of PA01 co-cultured with S. maltophilia 8 g/ml treated Synthetic Cystic Fibrosis Media for 24 days

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Warwick


ncbi_organism_name: Pectobacterium carotovorum subsp. carotovorum

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Cameroon: Ebogo I; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: marine

ncbi_organism_name: Planctomycetaceae bacterium


ncbi_organism_name: Nitrosopumilus sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_country: China: Jiangsu

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Institut Pasteur


ncbi_country: USA:California Monterey

ncbi_isolation_source: Symptomatic leaf tissue

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shanghai

ncbi_submitter: Huashan hospital


ncbi_organism_name: Cellulophaga sp.

ncbi_submitter: Tsinghua University


ncbi_isolation_source: plaque-purified isolate from stock culture

ncbi_organism_name: Chlamydia muridarum str. Nigg

ncbi_submitter: University of North Carolina at Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;x__Chlamydia/Chlamydophila group;g__Chlamydia;s__Chlamydia muridarum;x__Chlamydia muridarum str. Nigg


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Bulgaria: Tarnovo

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus anthracis

ncbi_strain_identifiers: BUL 19

ncbi_submitter: Bundeswehr


ncbi_organism_name: Paenarthrobacter sp. 4246

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Japan:Shiga; Otsu; Lake Biwa

ncbi_isolation_source: Lake freshwater

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: The University of Tokyo


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: Oregon State University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1532 from squamous cell carcinomas patient MST015

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Queensland


ncbi_isolation_source: Spontaneous rifampin-resistant isolate from ATCC 43816

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_strain_identifiers: ATCC 43816 KPPR1

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Colombia: Bogota

ncbi_isolation_source: retail store

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Corpoica


ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: EPFL


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Providencia hangzhouensis

ncbi_submitter: University of Oxford


ncbi_isolation_source: trach aspirate

ncbi_organism_name: Enterococcus sp. HMSC035C10

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Japan

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Toho University


ncbi_isolation_source: sputum

ncbi_organism_name: Prevotella denticola

ncbi_submitter: University of the Sunshine Coast


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Xinjiang Agricultural University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_country: Portugal: Guilhabreu; District Vila do Conde

ncbi_organism_name: Escherichia coli

ncbi_submitter: Max Rubner-Institut


ncbi_country: Netherlands: Haarlem

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Regional Laboratory for Medical Microbiology and Public Health


ncbi_country: Italy: Rome

ncbi_isolation_source: wound swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Rome "La Sapienza"


ncbi_country: Germany

ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Tokyo Institute of Technology


ncbi_organism_name: Kroppenstedtia eburnea

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pretoria


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides sp. CAG:770

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pedobacter mendelii

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: Salmonella enterica CVM N45930 v1.0

ncbi_country: USA: MD

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: Brazil

ncbi_isolation_source: mucus of apparently healthy coral zoanthid (Palythoa caribaeorum)

ncbi_organism_name: Photobacterium jeanii

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bradyrhizobium sp. 604_D8_N2_3

ncbi_submitter: VIB


ncbi_country: Finland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Uppsala University


ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: Col 26-PUJ

ncbi_submitter: Pontificia Universidad Javeriana


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_organism_name: Oscillibacter sp.


ncbi_country: China: Sichuan

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: urinary tract

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences


ncbi_organism_name: Kangiellaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Brazil:Santa Catarina; Blumenau

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: United Kingdom: Lincoln

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ATCC 33591_Moe4

ncbi_submitter: University of Lincoln


ncbi_country: Pacific Ocean

ncbi_isolation_source: Sediments

ncbi_organism_name: Bacillus cereus

ncbi_submitter: The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Butyricicoccaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Sichuan University


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Rhizobium sp. Leaf321

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Bacteroides stercoris


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Dialister invisus

ncbi_submitter: EMG


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_submitter: Emory Rollins School of Public Health


ncbi_submitter: shandong university


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Poland

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: KNOW (Leading National Research Centre) Scientific Consortium “Healthy Animal – Safe Food”


ncbi_country: Denmark: Kalundborg

ncbi_isolation_source: activated sludge from Kalu_18-Q3-R12-55

ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_submitter: Zhejiang university


ncbi_submitter: Nanjing Drum Tower Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Helcococcus sp.


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Argentina: Vila; Santa Fe

ncbi_isolation_source: first pond of the AUR serial dairy industry stabilization pond system

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: INTA


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: Colorado State University


ncbi_country: New Caledonia

ncbi_isolation_source: soil

ncbi_organism_name: Leptospira saintgironsiae

ncbi_submitter: Institut Pasteur Montevideo


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Christian Medical College


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Tang lab


ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Australia: Victoria

ncbi_isolation_source: dairy farm

ncbi_organism_name: Listeria innocua

ncbi_submitter: CSIRO


ncbi_isolation_source: Bronchoalveolar lavage

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater under a natural surface slick

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Hallella faecis

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Bacillus subtilis


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Center for Bioinformatics


ncbi_country: China: Beijing

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: USA: Logan; Utah

ncbi_isolation_source: Pollen provision

ncbi_organism_name: Apilactobacillus micheneri

ncbi_submitter: University of California, Riverside


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Leuconostoc suionicum

ncbi_submitter: Jeju National University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Candidatus Limisoma sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limisoma;x__unclassified Candidatus Limisoma;s__Candidatus Limisoma sp.


ncbi_organism_name: Erysipelothrix rhusiopathiae

ncbi_submitter: University of Life Sciences in Lublin


ncbi_organism_name: Escherichia sp.


ncbi_organism_name: Mariniblastus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: IFSC USP


ncbi_organism_name: Escherichia coli

ncbi_submitter: United Arab Emirates University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: shandong university


ncbi_organism_name: Alloalcanivorax xenomutans


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium


ncbi_organism_name: Winogradskyella sediminis

ncbi_submitter: Ocean University of China


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Pusillimonas sp.

ncbi_submitter: University of South Africa


ncbi_organism_name: Streptomyces sp. NPDC093249

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_organism_name: bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Roseovarius sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: CEITEC VETUNI


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_assembly_name: freshwater MAG --- MJ-2014-D4_bin-285

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: cold seep

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Lacticaseibacillus rhamnosus


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_assembly_name: freshwater MAG --- LJ_bin-3261

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tongji University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: United Kingdom: England

ncbi_isolation_source: ear

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liverpool


ncbi_assembly_name: freshwater MAG --- KT5_bin-119

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_assembly_name: Escherichia coli ATCC 25922

ncbi_organism_name: Escherichia coli ATCC 25922

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou Center for Disease Prevention and Control


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Aquipseudomonas alcaligenes

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Denmark

ncbi_isolation_source: Pork meat

ncbi_organism_name: Enterococcus faecalis EnGen0075

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Alloalcanivorax venustensis

ncbi_submitter: Stanford University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Canada: Buffalo Point; MB

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Public Health Agency of Canada


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-084


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Chesapeake Bay; Maryland

ncbi_isolation_source: surface seawater

ncbi_organism_name: Pseudoalteromonas sp. SG45-1

ncbi_submitter: University of Alaska Fairbanks


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_49_11


ncbi_organism_name: Streptomyces europaeiscabiei

ncbi_submitter: Oregon State University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: TX

ncbi_isolation_source: swine

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: USA:Las Vegas

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae


ncbi_country: USA

ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 144107

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: Lithuania

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: MI

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_country: Thailand: Nongkhai

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_isolation_source: activated sludge

ncbi_organism_name: Methylococcus capsulatus

ncbi_strain_identifiers: MIR

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Segatella buccae D17

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Segatella;s__Segatella buccae;x__Segatella buccae D17


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Parolsenella sp.

ncbi_submitter: EMG


ncbi_organism_name: Limnobacter sp.


ncbi_country: USA: NC

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P4 gut compartment

ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mali

ncbi_isolation_source: feces

ncbi_submitter: SC


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Stockholm University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: AAFC


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D9_bin-1064

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Gardnerella vaginalis


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: freshwater MAG --- Umea3_bin-1751

ncbi_organism_name: uncultured Bacteroidota bacterium


ncbi_organism_name: Priestia sp. YIM B13486

ncbi_submitter: Yunnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Priestia;x__unclassified Priestia;s__Priestia sp. YIM B13486


ncbi_country: Denmark: Kalundborg

ncbi_isolation_source: activated sludge from Kalu_18-Q3-R12-55

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Rhodospirillales bacterium


ncbi_organism_name: Thalassospira lucentensis

ncbi_submitter: University of Southern California


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Roseovarius sp. Pro17

ncbi_submitter: Pukyong National University


ncbi_organism_name: Cyanobacteria bacterium J06627_28

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium J06627_28


ncbi_country: India

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: New Zealand: Nelson Marlborough

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: University of Bath


ncbi_organism_name: Sutcliffiella horikoshii

ncbi_submitter: Centro de Investigacion y de Estudios Avanzados del IPN - Unidad Irapuato


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: Caecum

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Mageeibacillus sp. UBA5438

ncbi_submitter: University of Queensland


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Vagina

ncbi_organism_name: Staphylococcus simulans

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_organism_name: Aerococcus sanguinicola

ncbi_submitter: STATENS SERUM INSTITUT


ncbi_country: China: Sichuang

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The Second Affiliated Hospital & Yuying Children's Hospital of Wenzhou Medical University


ncbi_submitter: Jinshan District Center for Disease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Maryland

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae 5652-06

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp.


ncbi_assembly_name: Rumen uncultured genome RUG13442

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA

ncbi_isolation_source: distillery sour grain mash incubated at 45C

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_strain_identifiers: CIRM-BIA 313

ncbi_submitter: Brigham Young University


ncbi_isolation_source: human gut


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Belgium

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: GBBC 1431

ncbi_submitter: Institute for Agricultural and Fisheries Research (ILVO)


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Meridianimaribacter flavus

ncbi_submitter: Xiamen University


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: fish gut metagenome


ncbi_country: Lebanon

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Lebanese American University


ncbi_organism_name: Brevundimonas sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: Xinjiang Academy of Agricultural Sciences


ncbi_country: USA: Seattle

ncbi_organism_name: Mycolicibacterium flavescens

ncbi_submitter: UW


ncbi_organism_name: Escherichia coli O111:H21

ncbi_submitter: United State Department of Agriculture


ncbi_country: Germany

ncbi_isolation_source: raw bulk tank milk

ncbi_organism_name: Propioniciclava flava

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_country: Kuwait

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Kuwait University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: RWTH Aachen


ncbi_country: China:Yunxiao County;fujian provice

ncbi_isolation_source: sediment

ncbi_organism_name: Acinetobacter sp. GSS19

ncbi_submitter: Institute of Eco-environment and Soil Science,Guangdong Academy of Sciences


ncbi_country: USA: California; Los Angeles County

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: USA: IL

ncbi_isolation_source: celery stalk and leaf

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee


ncbi_country: Austria: Pichlinger See

ncbi_isolation_source: freshwater

ncbi_organism_name: Pedobacter sp. SL55

ncbi_submitter: Joint Microbiome Facility


ncbi_country: India: Mumbai

ncbi_isolation_source: 2 Mrad irradiated Bombay duck

ncbi_organism_name: Deinococcus radiophilus


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D2_bin-0019

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas trivialis

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_assembly_name: IMG-taxon 2675902965 annotated assembly

ncbi_organism_name: Kosakonia oryzae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Hyphomonas sp. UBA2654

ncbi_submitter: University of Queensland


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Laboratory for Foodborne Zoonoses


ncbi_organism_name: Akkermansia muciniphila

ncbi_strain_identifiers: AKK-TMU

ncbi_submitter: Soochow University


ncbi_isolation_source: metagenome

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Treponema sp.


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Washington


ncbi_organism_name: Vibrio injensis

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: oxycline seawater

ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Colombia

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Egypt

ncbi_organism_name: Escherichia coli

ncbi_submitter: USUHS


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Alistipes communis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: California Department of Public Health


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: cold seep

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Finland

ncbi_isolation_source: Blood

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_organism_name: Leuconostoc pseudomesenteroides

ncbi_submitter: Chr-Hansen


ncbi_isolation_source: Human sputum

ncbi_submitter: TU Delft


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_country: China: Baoding

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Hebei Academy of Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_assembly_name: LMG 32019 type strain assembly

ncbi_organism_name: Burkholderia sp. LMG 32019

ncbi_submitter: LM-UGent


ncbi_country: Malaysia

ncbi_isolation_source: not known

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Norway

ncbi_isolation_source: Ulcer

ncbi_organism_name: Tenacibaculum finnmarkense genomovar finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_country: USA: New Mexico

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_isolation_source: Cerebrospinal fluid

ncbi_organism_name: Leclercia sp. Marseille-Q4284

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: Flavobacterium chungnamense

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Candidatus Nanosyncoccus nanoralicus

ncbi_submitter: EMG

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;s__Candidatus Nanosyncoccus nanoralicus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;s__Candidatus Nanosyncoccus nanoralicus


ncbi_organism_name: uncultured Roseburia sp.


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: metagenome

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Halomonas sp. SCS19

ncbi_submitter: Ocean University of China


ncbi_country: USA: Houston

ncbi_submitter: University of Pittsburgh


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Comamonas aquatica

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Coprococcus catus


ncbi_country: China: Liaoning

ncbi_isolation_source: lung

ncbi_submitter: Institute of Special Animal and Plant Sciences, The Chinese Academy of Agricultural Sciences,


ncbi_organism_name: Lactobacillus iners

ncbi_submitter: University of Toronto


ncbi_organism_name: Parascardovia denticolens


ncbi_organism_name: Legionella maceachernii

ncbi_strain_identifiers: Gorman PX-1-G2-E2

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 3 / C; 5m depth; 0.2 filter

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Curtobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_country: USA: CO

ncbi_isolation_source: leaves

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas arboricola;x__Xanthomonas arboricola pv. corylina;x__Xanthomonas arboricola pv. corylina str. NCCB 100457


ncbi_organism_name: Ensifer sp. SEMIA 135

ncbi_strain_identifiers: SEMIA 135

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Sinorhizobium/Ensifer group;g__Ensifer;x__unclassified Ensifer;s__Ensifer sp. SEMIA 135


ncbi_country: USA: CT

ncbi_submitter: FDA/CFSAN


ncbi_isolate: Fecal samples

ncbi_isolation_source: PAR

ncbi_strain_identifiers: Fecal samples


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Micromonospora olivasterospora

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite de Limoges


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: SAN Group Biotech Germany


ncbi_organism_name: Culturomica massiliensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Methylobacterium sp. NPDC014697


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: University of Georgia


ncbi_organism_name: Faecousia sp.


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Centipeda sp. (in: firmicutes)

ncbi_submitter: Hospital Sirio-Libanes

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda;x__unclassified Centipeda (in: firmicutes);s__Centipeda sp. (in: firmicutes)


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_organism_name: Acetobacter indonesiensis

ncbi_submitter: Teagasc


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Marcell Experimental Forest

ncbi_isolation_source: soil

ncbi_organism_name: bacterium UBP10_UBA1160

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__unclassified Bacteria candidate phyla;s__bacterium UBP10_UBA1160


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG213

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: USDA


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Gardnerella sp. DNF00983

ncbi_submitter: Fred Hutch


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: United Kingdom: PHE

ncbi_isolation_source: Laboratory reference strain

ncbi_submitter: University of Bath


ncbi_organism_name: bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Roseburia sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sun-yat Sen University


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Pseudomonas coleopterorum

ncbi_submitter: INRAE


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Food Microbiology, Food Science and Technology, Tokyo University of Marine Science and Technology


ncbi_country: USA: NH; DHMC

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Dartmouth College


ncbi_country: USA: Oakland

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Candidatus Atribacteria bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: EMG


ncbi_isolation_source: Caecum


ncbi_country: France

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Tunisia

ncbi_isolation_source: seafood

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_country: China

ncbi_isolation_source: food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_country: Mayotte

ncbi_isolation_source: water

ncbi_organism_name: Leptospira levettii

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_country: USA: MD

ncbi_isolation_source: ground turkey

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: FDA


ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: USA: Denver; CO

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Colorado


ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_assembly_name: freshwater MAG --- Loclat_bin-07363

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester - waste activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Shandong University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: bacterium

ncbi_submitter: AAFC


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Haliangium sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Research Institute of Physico-Chemical Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Deinococcus wulumuqiensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_isolation_source: respiratory

ncbi_organism_name: Bordetella bronchiseptica

ncbi_submitter: Hunan Agricultural University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Israel

ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kazan Federal University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Streptomyces sp. NPDC048594

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: South Korea: chungnam province

ncbi_isolation_source: duckling with tremor

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Korea Research Institute of Bioscience & Biotechnology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Ulvibacter sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Kenya

ncbi_isolation_source: Pus

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_assembly_name: D712 Updates

ncbi_country: USA: San Diego

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UC San Diego


ncbi_organism_name: Candidatus Atribacteria bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of South Africa


ncbi_submitter: Dutch CPE surveillance Study Group


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: USA: Colorado

ncbi_isolation_source: blood

ncbi_submitter: University of Colorado Boulder


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Washington


ncbi_country: Sweden

ncbi_organism_name: Leuconostoc suionicum

ncbi_submitter: Chung-Ang University


ncbi_organism_name: Priestia sp. FSL W8-0524

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Priestia;x__unclassified Priestia;s__Priestia sp. FSL W8-0524


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Brazil:Sao Paulo; Sao Paulo

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: EPFL


ncbi_country: India: Kolkata

ncbi_isolation_source: Human gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_country: Mexico

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of California at Davis


ncbi_country: Venezuela: Distrito Capital; Municipio Libertador; Caracas

ncbi_isolation_source: stomach

ncbi_submitter: University of Gothenburg


ncbi_submitter: NATIONALCENTERFORGENOMERESOURCES


ncbi_isolation_source: soil

ncbi_organism_name: Glycomyces xiaoerkulensis

ncbi_submitter: Tarim University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri 2a

ncbi_submitter: Academy of Military Medical Sciences


ncbi_isolation_source: Poultry Farm

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Rheinheimera aquimaris


ncbi_strain_identifiers: SCHU S4

ncbi_submitter: Swedish Defence Research Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis;sb__Francisella tularensis subsp. tularensis;x__Francisella tularensis subsp. tularensis SCHU S4


ncbi_country: China

ncbi_organism_name: Luteipulveratus flavus

ncbi_submitter: Yunnan University


ncbi_organism_name: Marinobacter alexandrii

ncbi_submitter: University of Southern California


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: University Hospital Regensburg


ncbi_country: Tunisia

ncbi_organism_name: Serratia marcescens

ncbi_submitter: ANSES


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Lacticaseibacillus paracasei subsp. paracasei

ncbi_submitter: iFUNFoods


ncbi_isolation_source: Human fecal samples

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: microbial pathogenic ecology group


ncbi_country: France: Gif-sur-Yvette

ncbi_organism_name: Cereibacter sphaeroides

ncbi_strain_identifiers: FY

ncbi_submitter: Bellevue University


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thermodesulfatator sp.

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: The University of Auckland


ncbi_country: Thailand

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Shigella boydii

ncbi_submitter: JCVI


ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Shewanella waksmanii ATCC BAA-643

ncbi_strain_identifiers: ATCC BAA-643

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Lentilitoribacter sp.


ncbi_country: South Korea

ncbi_isolation_source: stool

ncbi_organism_name: Merdimonas faecis

ncbi_submitter: Seoul National University


ncbi_country: China: Guizhou

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Xanthomonas axonopodis pv. cajani

ncbi_strain_identifiers: NCPPB 2063

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: India: Gujarat

ncbi_isolation_source: sediment sample of a salt marsh in a wild ass sanctuary

ncbi_organism_name: Chryseobacterium salipaludis

ncbi_submitter: China CDC


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_isolation_source: fecal swab

ncbi_submitter: Karolinska Institute


ncbi_country: Belgium

ncbi_organism_name: Actinobacillus equuli subsp. haemolyticus

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Mesomycoplasma hyorhinis SK76

ncbi_submitter: MD Anderson Cancer Center


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Niameybacter sp.

ncbi_submitter: China Agricultural University


ncbi_country: USA: CA; San Francisco

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium haemophilum

ncbi_submitter: UCSF


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD7577

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: surficial creek

ncbi_organism_name: Candidatus Berkelbacteria bacterium

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;x__unclassified Candidatus Berkelbacteria;s__Candidatus Berkelbacteria bacterium


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Clostridium sp. CAG:451

ncbi_submitter: DTU


ncbi_country: Canada: BC

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Clostridium sp.


ncbi_country: China: Shanghai

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_submitter: Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: EBI


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Viridibacillus sp. NPDC093762

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Xylanibacter caecicola


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_country: Pakistan

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: USA: Baltimore

ncbi_isolation_source: urinary tract

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: IFSC USP


ncbi_organism_name: Streptococcus cristatus

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Oenococcus oeni

ncbi_submitter: UMR oenologie


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_organism_name: Clostridium phoceensis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Norway: Troll C

ncbi_isolation_source: deep subsurface oil reservoir

ncbi_organism_name: Thermotoga sp. Xyl54

ncbi_submitter: University of Alberta


ncbi_country: France

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical university of Denmark


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: NIAID Bioinformatics and Computational Biosciences Branch


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Megasphaera elsdenii

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus infantis

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore