ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S020

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S020


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Contig

ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Jamaica

ncbi_isolation_source: cave soil

ncbi_organism_name: Bacillus sp. IBL03825

ncbi_submitter: USDA-ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. IBL03825


gtdb_representative: t

ncbi_assembly_level: Complete Genome

ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wolfeibacteriota;s__Candidatus Wolfebacteria bacterium GW2011_GWB1_47_1


ncbi_country: Ireland

ncbi_isolation_source: Homo sapiens

ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Adjame


ncbi_organism_name: Burkholderia pseudomallei


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Adekunle Ajasin University


ncbi_country: USA: Davis

ncbi_isolation_source: Spoiled tofu

ncbi_organism_name: Pseudomonas carnis

ncbi_submitter: University of California, Davis


ncbi_country: USA: MI

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_country: Netherlands

ncbi_submitter: Dutch CPE surveillance study group


ncbi_country: Malaysia

ncbi_isolation_source: closed biodigester

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium UBA1397


ncbi_country: Sweden: Orebro

ncbi_isolation_source: periprosthetic tissue

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_country: Saint Kitts and Nevis: Saint Kitts; Basseterre

ncbi_isolation_source: skin lesion from farm animal

ncbi_organism_name: Dermatophilus congolensis

ncbi_submitter: Ross University School of Veterinary Medicine


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Kenya Medical Research Institute


ncbi_country: China: Nanhai

ncbi_isolation_source: deep sea

ncbi_organism_name: Pseudomonas sp. gcc21

ncbi_submitter: QINGDAO University


ncbi_country: Estonia

ncbi_isolation_source: manure

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_country: China: Jiangsu

ncbi_isolation_source: rectum

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_organism_name: Erwinia sp. E_sp_W01_6

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_country: USA: Metropolitan Atlanta

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae GA47461

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Pseudomonas sp.


ncbi_country: USA: Boston; MA

ncbi_isolation_source: joint fluid

ncbi_organism_name: Staphylococcus aureus M0827

ncbi_submitter: Broad Institute


ncbi_country: Norway

ncbi_isolation_source: environmental

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_country: Canada: Nova Scotia; Halifax

ncbi_isolation_source: Low respiratory tract sample

ncbi_submitter: TAILORED-Treatment project

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pseudopneumoniae;x__Streptococcus pseudopneumoniae ATCC BAA-960 = CCUG 49455

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_country: USA: Crystal Geyser

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium CG10_37_50

ncbi_submitter: UC Berkeley


ncbi_country: Haiti

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: CDC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Alberta

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: University of Calgary


ncbi_country: Germany: Berlin

ncbi_isolation_source: beetle abdomen

ncbi_organism_name: Wolbachia endosymbiont of Oryzaephilus surinamensis

ncbi_refseq_category: reference genome

ncbi_submitter: Johannes Gutenberg University Mainz


ncbi_organism_name: Eshraghiella crossota

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Selenomonadales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Inyo County; California

ncbi_isolation_source: Ornithodoros hermsii tick

ncbi_organism_name: Borrelia hermsii CC1

ncbi_submitter: University of California Irvine


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine


ncbi_assembly_level: Chromosome

ncbi_country: Canada: British Columbia

ncbi_isolation_source: Animal - Chicken

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. SA20090435


ncbi_country: Antarctica: Shetland Islands

ncbi_isolation_source: coastal marine sediments

ncbi_organism_name: Shewanella vesiculosa

ncbi_submitter: Korea Polar Research Institute


ncbi_genome_representation: partial

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: NCTC 418

ncbi_submitter: University of Basel


ncbi_country: Italy: Vulcano; Aeolian Islands

ncbi_isolation_source: acidic; salty water

ncbi_organism_name: Acidihalobacter ferrooxydans

ncbi_submitter: Curtin University


ncbi_organism_name: Bacteroides caccae


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: SC


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: clinical

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University of Pittsburgh


ncbi_country: Lebanon

ncbi_isolation_source: Serdaleh

ncbi_organism_name: Lentilactobacillus diolivorans

ncbi_submitter: DTU


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Citellophilus tesquorum

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: Rectal

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: EMG


ncbi_country: China: Jiangsu

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Shandong

ncbi_isolation_source: vaginal secretion

ncbi_organism_name: Gardnerella swidsinskii

ncbi_submitter: Shandong University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Russia

ncbi_isolation_source: pheasant chyme

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Kuban State Agrarian University


ncbi_country: USA

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University of Calgary


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Max Planck Institute for Biology


ncbi_country: France

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_organism_name: Vibrio aestuarianus subsp. francensis

ncbi_submitter: IFREMER


ncbi_organism_name: Shewanella seohaensis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Coxiella burnetii

ncbi_submitter: IHU mediterranee infection


ncbi_organism_name: uncultured Phycisphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Ohio

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Leifsonia sp. C5G2

ncbi_submitter: The Ohio State University


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_assembly_name: freshwater MAG --- C-5_bin-467

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: BILS


ncbi_country: Australia: Victoria

ncbi_isolation_source: dairy farm

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: CSIRO


ncbi_organism_name: Escherichia coli

ncbi_submitter: Monash University


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Australia: Adelaide

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SAHMRI


ncbi_country: South Africa: Cape Town

ncbi_submitter: Curtin University


ncbi_country: Russia: Kazan

ncbi_organism_name: Paenibacillus sp. EZ-K15

ncbi_submitter: Kazan (Volga Region) Federal University


ncbi_organism_name: Jiangellaceae bacterium


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: The South China Sea

ncbi_isolation_source: Sediment

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking university people's hospital


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institut Pasteur


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Pedosphaera sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Pseudoflavonifractor sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Ningbo

ncbi_isolation_source: pus


ncbi_country: Poland: Konstancin-Jeziorna

ncbi_submitter: National Medicines Institute


ncbi_country: Portugal

ncbi_isolation_source: Oysters

ncbi_organism_name: Shewanella algae

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: Rumen uncultured genome RUG14172

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA64

ncbi_submitter: Broad Institute


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium CG_4_10_14_0_8_um_filter_35_28


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_country: Australia: Sydney

ncbi_isolation_source: clinical sample

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Oxford


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: \The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Georgia


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Icahn School of Medicine


ncbi_country: Estonia: Polvamaa; Kooraste

ncbi_organism_name: Enterococcus faecalis


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Methylovirgula sp.

ncbi_submitter: National University of Singapore


ncbi_organism_name: Nannocystaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Guangdong Province

ncbi_isolation_source: forest soil

ncbi_organism_name: Edaphobacter acidisoli

ncbi_submitter: Sun Yat-sen University


ncbi_country: India: Chandigarh

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Thailand: Bangkok

ncbi_submitter: The University of Queensland


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Los Alamos National Lab


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Treponema sp.

ncbi_submitter: Washington University School of Medicine


ncbi_submitter: University of Bern


ncbi_country: China: Mianyang

ncbi_organism_name: Proteus vulgaris

ncbi_submitter: Sichuan University


ncbi_submitter: Khon Kaen University


ncbi_organism_name: Alteriqipengyuania sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium UBA2781

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA2781


ncbi_submitter: Massey University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. salamae;x__Salmonella enterica subsp. salamae serovar II 48:b:-


ncbi_country: Brazil:Rio de Janeiro

ncbi_isolation_source: Mugil brasiliensis scales

ncbi_organism_name: Aeromonas allosaccharophila

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Thioalkalivibrio sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Daniudi gas field in northern Ordos Basin

ncbi_isolate: PCX

ncbi_isolation_source: sludge containing polyacrylamide

ncbi_organism_name: Klebsiella sp. PCX

ncbi_strain_identifiers: PCX

ncbi_submitter: Southwest Petroleum University


ncbi_organism_name: Caldibacillus sp.

ncbi_submitter: Instituto de Quimica


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 1-5 micron fraction

ncbi_organism_name: Vibrio cyclitrophicus

ncbi_submitter: Massachusetts Institute of Technology


gtdb_type_species_of_genus: t

ncbi_strain_identifiers: Texas

ncbi_submitter: Norwegian University of Life Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Methylococcales;f__Methylococcaceae;g__Methylococcus;s__Methylococcus capsulatus;x__Methylococcus capsulatus str. Texas = ATCC 19069


ncbi_country: USA

ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Hungary: Budapest

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Corynebacterium propinquum

ncbi_submitter: Semmelweis University


ncbi_country: Chile: San Fernando

ncbi_isolation_source: Macerated buds

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: INIA Rayentue

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_country: USA: MN

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: [Eubacterium] saphenum


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Washington University School of Medicine


ncbi_country: China

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_country: USA: CA

ncbi_isolation_source: environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China:Chengdu city; Sichuan Province

ncbi_isolation_source: a mixture of oil-based drill cuttings and paddy soil

ncbi_organism_name: Chelativorans petroleitrophicus

ncbi_strain_identifiers: SCAU 2101

ncbi_submitter: Sichuan Agricultural university


ncbi_country: South Korea: Anseong-si

ncbi_isolation_source: fresh water

ncbi_organism_name: Flavobacterium anseongense

ncbi_submitter: Hankyong National University


ncbi_organism_name: Candidatus Arcticimaribacter sp.

ncbi_submitter: Yantai University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Candidatus Arcticimaribacter;x__unclassified Candidatus Arcticimaribacter;s__Candidatus Arcticimaribacter sp.


ncbi_country: Belgium

ncbi_isolation_source: malted barley

ncbi_organism_name: Liquorilactobacillus hordei DSM 19519

ncbi_submitter: Shanghai Majorbio


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Actinomyces naeslundii

ncbi_submitter: King's College London


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Nitrospira sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces vulcanius

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Serratia quinivorans

ncbi_submitter: Tsinghua University


ncbi_organism_name: Aquimarina rubra


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_isolate: Fujian Provincial Hospital

ncbi_strain_identifiers: Fujian Provincial Hospital;Kp2162

ncbi_submitter: Fujian  Agriculture and Forestry  University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Fervidobacterium sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_organism_name: Streptomyces sp. NPDC059762

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Streptomyces zhihengii


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bacillus cereus group sp. Bce031

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. Bce031


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Gemmatimonadales bacterium


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: Dickeya dadantii subsp. dieffenbachiae

ncbi_strain_identifiers: CFBP 2051

ncbi_submitter: NIVIP


ncbi_organism_name: Aeromonas rivipollensis

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Stanford University


ncbi_organism_name: Candidatus Ventrimonas sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Neisseria sp. P0018.S002

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: University of California San Francisco


ncbi_organism_name: Streptomyces sp. WG7

ncbi_submitter: University of Sharjah


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Japan: Hokkaido

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_assembly_name: freshwater MAG --- Ja2-D2_bin-0626

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Roseburia faecis


ncbi_organism_name: uncultured Parvibaculum sp.


ncbi_organism_name: Faecousia sp.


ncbi_organism_name: uncultured Anaerolinea sp.


ncbi_organism_name: uncultured Desulfobacteraceae bacterium


ncbi_organism_name: Cryobacterium melibiosiphilum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Genoscope CEA


ncbi_isolation_source: human gut

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_assembly_name: freshwater MAG --- Ja1-D2_bin-2018

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Chicago


ncbi_country: China: Nanchang

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University Health Science Center


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: South Africa:Welkom

ncbi_isolation_source: water

ncbi_organism_name: Betaproteobacteria bacterium UBA2592

ncbi_submitter: University of Queensland


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: INRA-MIG


ncbi_country: South Korea: East sea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Fictibacillus marinisediminis

ncbi_submitter: Incheon National University


ncbi_country: USA: NE

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)

ncbi_submitter: FDA


ncbi_organism_name: Thermodesulfobacterium commune

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P143P

ncbi_submitter: South China Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG12266

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: female child feces

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Prevotella jejuni


ncbi_organism_name: Salmonella enterica subsp. enterica


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S039

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S039


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Cutibacterium acnes subsp. acnes

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Butyrivibrio sp. AD3002

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Spain

ncbi_isolation_source: Hospital Universitario Central de Asturias (Oviedo)

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: CNAG-CRG


ncbi_country: USA: PA

ncbi_isolation_source: large intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Nanjing

ncbi_isolation_source: greenhouse soil

ncbi_organism_name: Acinetobacter sp. LMB-5

ncbi_submitter: East China University of Science and Technology


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Microcoleus sp. B3-D2

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Thailand

ncbi_isolation_source: marine sediment near shore

ncbi_organism_name: Streptomyces chumphonensis

ncbi_submitter: Chulalongkorn University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Kocuria sp.

ncbi_submitter: Center for Bioinformatics


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: Japan: Japan Collection of Microorganisms

ncbi_isolation_source: Tamsui River Mangrove Conservation Area

ncbi_organism_name: Zobellella denitrificans

ncbi_submitter: Taipei Medical University


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S31

ncbi_organism_name: Dorea sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: bioreactor

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: China: Shenzhen

ncbi_isolation_source: shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Stenotrophomonas muris

ncbi_submitter: Emory University School of Medicine


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_country: Pacific Ocean: western Pacific

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Croceimicrobium hydrocarbonivorans

ncbi_submitter: Third Institute of Oceanography, State Oceanograogy Administration of China


ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Ectothiorhodospiraceae bacterium


ncbi_country: Chile: Antofagasta

ncbi_isolation_source: stools

ncbi_organism_name: Shigella sonnei

ncbi_submitter: Universidad de Chile


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Cloacibacillus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: NY; Buffalo

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: University of Iowa


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Staphylococcus aureus M67929_020413

ncbi_submitter: Broad Institute


ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: South Korea: Pocheon

ncbi_isolation_source: Soil of ginseng field

ncbi_organism_name: Microbacterium ginsengisoli

ncbi_submitter: Austrian Institute of Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: Stanley WWTPs_35 WWTPs effluent

ncbi_organism_name: Shigella flexneri


ncbi_country: Argentina

ncbi_isolation_source: stool

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Biomin Research Center


ncbi_isolation_source: Mud sample from Napahai wetland

ncbi_organism_name: Pseudomonas sp. SW-3

ncbi_submitter: Kunming University of Science and Technology


ncbi_country: South Africa: Ozwatini

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_isolation_source: feces


ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine


ncbi_country: Canada: Ontario

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ministry of Health, National Public Health Laboratory


ncbi_isolation_source: not provided

ncbi_organism_name: Porphyromonas endodontalis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Levyibacteriota bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levyibacteriota bacterium


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Germany

ncbi_isolation_source: cardiac valve

ncbi_organism_name: Coxiella burnetii cb109

ncbi_submitter: URMITE


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Greece

ncbi_isolation_source: Artisanal Yoghurt

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: CIRM-BIA 1131

ncbi_submitter: Brigham Young University


ncbi_country: USA: Rochester; NY; Lake Ontario

ncbi_isolation_source: lake water

ncbi_organism_name: Deinococcus sp. RIT780

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Belgium: Ghent

ncbi_organism_name: Xanthobacter sp. NFH-94

ncbi_submitter: Ghent University


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: USA: Ohio

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: Bahamas: Moon Rock Pond; Cockburn Town; San Salvador

ncbi_isolation_source: gill

ncbi_organism_name: Candidatus Thiodiazotropha taylori

ncbi_submitter: Clemson University


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: San Diego Bay; CA

ncbi_isolation_source: swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Stanford University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus infantarius

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_submitter: University of Iowa


ncbi_country: China: Hangzhou

ncbi_submitter: Hangzhou First People's Hospital


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Sweden

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: Slovenia

ncbi_isolation_source: feces

ncbi_organism_name: Bacillus tropicus

ncbi_submitter: DGA CBRN Defence Center


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Minnesota

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: CDC


ncbi_country: Canada: Ontario

ncbi_isolation_source: manure from farm

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: Canada: Guelph

ncbi_isolation_source: Seed mucilage

ncbi_organism_name: Pantoea sp. EKM22T

ncbi_submitter: University of Guelph


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Sediminibacter sp. Hel_I_10

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: South Korea

ncbi_isolation_source: A Bobal wine

ncbi_organism_name: Companilactobacillus bobalius

ncbi_submitter: ChunLab, Inc.


ncbi_assembly_name: Rumen uncultured genome RUG12751

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Robinsoniella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Agrobacterium fabrum

ncbi_submitter: Academia Sinica


ncbi_country: South Africa

ncbi_organism_name: Mammaliicoccus lentus

ncbi_submitter: Zoonosis Science Center


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Gemmataceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Stool Culture

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Broad Institute


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: France: Nantes

ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: USA: Palo Alto; California

ncbi_isolation_source: bloodstream

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Stanford Healthcare


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. microtus;x__Yersinia pestis subsp. microtus bv. Ulegeica


ncbi_organism_name: Cytobacillus firmus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Biotechnology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: marine

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Netherlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Parasutterella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_country: Australia: Melbourne

ncbi_isolation_source: laboratory-created transinfected host line (F10)

ncbi_organism_name: Wolbachia endosymbiont of Aedes aegypti

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Thermoflexales bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University hospital Lubeck


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus salivarius


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Candidatus Phytoplasma asteris

ncbi_submitter: University of Hohenheim

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrI (Aster yellows group);s__Candidatus Phytoplasma asteris


ncbi_country: Italy: Palermo

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: S.Orsola-Malpighi University Hospital


ncbi_country: China: Wuhan

ncbi_isolation_source: river water

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: The First Affiliated Hospital of Medical School


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Clostridioides difficile T23

ncbi_submitter: LPBA


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFCSPHIGHO2_02_FULL_37_13


ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Brazil: Tatui

ncbi_isolation_source: Cecum and rectal contents from Capybaras

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Brazilian Center for Research in Energy and Materials (CNPEM)


ncbi_organism_name: Streptococcus pluranimalium

ncbi_submitter: Shihezi University


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_isolation_source: feces

ncbi_organism_name: Ileibacterium valens


ncbi_isolation_source: NHS Scotland

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_country: Chile

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: China: Wuhu Polymetallic Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: bioMerieux


ncbi_country: Japan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Nagoya University


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Caecum

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GFQ9D219P-1

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Rothia sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Johns Hopkins Applied Physics Lab


ncbi_organism_name: Fibrobacteria bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Pseudomonas sp. FYR_8

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: uncultured Rubrobacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Citrobacter farmeri

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_submitter: National Cheng Kung University Hospital


ncbi_organism_name: Eisenbergiella porci

ncbi_submitter: Laboratory for Microbiome Sciences  Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_organism_name: Aeromonas media

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Bacillus tropicus

ncbi_submitter: Universiti Tunku Abdul Rahman


ncbi_organism_name: Evtepia gabavorous

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Fudan University Shanghai Cancer Center


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_organism_name: Bacillus cereus group sp. BC254

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BC254


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Aquabacterium sp.

ncbi_submitter: UNIVERSITY OF NORTH BENGAL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__unclassified Aquabacterium;s__Aquabacterium sp.


ncbi_organism_name: Megasphaera elsdenii

ncbi_strain_identifiers: FXR

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Faecousia sp.


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Houston Methodist


ncbi_organism_name: Klebsiella sp. DR_172cip

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Pseudomonas sp. NFX71

ncbi_submitter: iBET


ncbi_organism_name: Streptomyces sp. NPDC008092

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: uncultured Phycisphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY

ncbi_taxonomy: d__Bacteria;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;x__unclassified Candidatus Fermentibacteraceae;s__Candidatus Fermentibacteraceae bacterium


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19


ncbi_country: South Africa: Jukskei River

ncbi_isolation_source: water

ncbi_organism_name: Aeromonas rivipollensis

ncbi_submitter: University of South Africa


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_submitter: NTNU


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Tang lab


ncbi_assembly_name: IMG-taxon 2671180082 annotated assembly

ncbi_organism_name: Nitrosomonas marina

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Pennsylvania; Centralia

ncbi_isolation_source: soil

ncbi_organism_name: Spartobacteria bacterium

ncbi_submitter: Michigan State University


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: Pacific Ocean: Chile-Peru Current Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: USA: Texas

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Radboud University


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alloprevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. microtus;x__Yersinia pestis subsp. microtus bv. Altaica


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Center for Genome Regulation (CRG)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_country: China: Chifeng City; Inner Mongolia Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: SCAU


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: TCI Co., Ltd.


ncbi_organism_name: Solirubrobacterales bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Gemmiger sp.

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Sedimentibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp.


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: milk samples

ncbi_organism_name: Staphylococcus hyicus

ncbi_submitter: ANIWHA


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Brevinematales bacterium

ncbi_submitter: Northwestern University


ncbi_country: Mozambique

ncbi_organism_name: Mycobacterium asiaticum

ncbi_submitter: JCVI


ncbi_country: USA: Tennessee

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: iowa state university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_country: Italy: Foggia

ncbi_isolation_source: Litter

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: bioMerieux


ncbi_country: India: Karnataka

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii UH10707

ncbi_submitter: J. Craig Venter Institute


ncbi_country: China

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Luteimonas flava

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Butyricicoccus sp.

ncbi_submitter: Wilmar International Limited


ncbi_isolation_source: lake water

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_submitter: University of Trento


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St. Louis


ncbi_country: Togo: Lome

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universite de Lome


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_country: Colombia: South caribbean; Uraba

ncbi_isolation_source: Plant

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Universidad de Antioquia


ncbi_isolation_source: marine

ncbi_organism_name: Roseovarius sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mayotte

ncbi_organism_name: Leptospira mayottensis 200901116


ncbi_country: Jordan

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: University of Calgary


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National University of Singapore (NUS)


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Belgium: Sorinnes

ncbi_isolation_source: Chicken faeces

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Universite catholique de Louvain

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: South Korea: Chuncheon

ncbi_isolation_source: feces

ncbi_organism_name: Arthrobacter sp. YD4

ncbi_submitter: Dongguk University


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Bacilli;o__;f__;g__Candidatus Aphodocola;s__Candidatus Aphodocola excrementigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__Bacilli incertae sedis;g__Candidatus Aphodocola;s__Candidatus Aphodocola excrementigallinarum


ncbi_country: India

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Azotobacter chroococcum

ncbi_submitter: INCENTIVIZING RESEARCH IN AGRICULTURE


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Salmonella enterica subsp. enterica


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: McGill University


ncbi_country: Denmark

ncbi_isolation_source: Culture

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: Italy: Sicily

ncbi_organism_name: Brucella melitensis F15/06-7

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Phocaeicola sp.


ncbi_country: China: Meizhou; Guangdong Province

ncbi_isolation_source: lead-zinc ore

ncbi_organism_name: Hymenobacter fodinae

ncbi_submitter: Guangdong Microbial Culture Collection Center (GDMCC), Guangdong Institute of Microbiology


ncbi_country: Belgium

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_country: India: Vellore

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Kansas Medical Center


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_organism_name: Nitrosomonadaceae bacterium

ncbi_submitter: University of Montana


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_organism_name: Streptomyces griseomycini

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured Gaiellaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: France:Paris; Seine River

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universite Parsi-Saclay/ UMR1184


ncbi_country: Togo

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Methylotenera sp. G11

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Faecalibaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan: Tokyo

ncbi_isolation_source: blood

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Micromonospora sp. NBC_01392

ncbi_submitter: Technical University of Denmark


ncbi_country: Canada

ncbi_isolation_source: manure

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Canada: Labrador Sea

ncbi_isolation_source: Microcosm inoculated with Labrador Shelf sediment and amended with petroleum hydrocarbons

ncbi_organism_name: Sulfitobacter litoralis

ncbi_submitter: University of Calgary


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Roseburia inulinivorans


ncbi_country: Japan

ncbi_isolation_source: yoghurt

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: CIRM-BIA 1046

ncbi_submitter: Brigham Young University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Colombia

ncbi_organism_name: Staphylococcus aureus DAR5828

ncbi_submitter: Broad Institute


ncbi_isolate: ElbeA

ncbi_isolation_source: water

ncbi_organism_name: Methylomonas albis

ncbi_strain_identifiers: ElbeA

ncbi_submitter: GFZ German Research Centre for Geosciences


ncbi_organism_name: Rhodopila sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: University of Washington


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: USA: MA

ncbi_organism_name: Bordetella holmesii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Kansas State University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_country: Ireland

ncbi_isolation_source: Waste material

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University College Cork


ncbi_country: Italy

ncbi_isolation_source: kidney

ncbi_submitter: University of Bari

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bovismorbificans


ncbi_organism_name: Colwellia sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: uncultured candidatus Porisulfidus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;x__Chromatiales incertae sedis;x__Candidatus Porisulfidus;x__environmental samples;s__uncultured candidatus Porisulfidus sp.


ncbi_organism_name: uncultured Capnocytophaga sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC057543

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Thalassovita sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Vicinamibacteria bacterium


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: beer

ncbi_organism_name: Fructilactobacillus lindneri

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_isolation_source: not known

ncbi_organism_name: Yersinia intermedia


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Canada: Val-d Or

ncbi_isolation_source: surface-sterilized gnotobiotic actinorhizal nodule; gnotobiotic speckled alder inoculated with speckled alder rhizosphere soil

ncbi_organism_name: Pseudomonas sp. Pse1

ncbi_submitter: Universite de Sherbrooke


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: Spain: Mallorca

ncbi_organism_name: Xylella fastidiosa subsp. fastidiosa

ncbi_submitter: University of Balearic Islands


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: National University of Singapore


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Neisseria shayeganii 871

ncbi_submitter: Baylor College of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA: WA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Washington


ncbi_country: Lebanon

ncbi_submitter: LAU


ncbi_organism_name: Candidatus Nitrotoga sp.

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Nitrosomonadales;f__Gallionellaceae;g__Candidatus Nitrotoga;x__unclassified Candidatus Nitrotoga;s__Candidatus Nitrotoga sp.


ncbi_country: Thailand

ncbi_isolation_source: wound

ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: University of California San Francisco


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Yibin University


ncbi_isolation_source: human gut

ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: CO

ncbi_isolation_source: feces (Sus domesticus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: in vitro mutant of the strain MUH-1

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Heidelberg University Hospital


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Spain

ncbi_isolation_source: water

ncbi_organism_name: Salinivibrio kushneri

ncbi_submitter: Universidad de Sevilla


ncbi_country: Germany: forest district Pennin

ncbi_isolation_source: compound leaves

ncbi_organism_name: Aureimonas altamirensis

ncbi_submitter: Leibniz Centre for Agricultural Landscape Research (ZALF)


ncbi_country: Australia: Brisbane

ncbi_isolation_source: sputum

ncbi_organism_name: Prevotella melaninogenica

ncbi_submitter: University of the Sunshine Coast


ncbi_country: United Kingdom: Scotland; Aberdeen; Scottish Rural College (SRUC) Craibstone

ncbi_isolation_source: agricultural soil; 12C-CH4 incubated pH 4.5 or pH 7.5; selected DNA (low %GC) through ClCs fractionation

ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: Ecole Centrale de Lyon


ncbi_submitter: Pediatric Dentistry, Tokyo Dental College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus anginosus group;s__Streptococcus anginosus;sb__Streptococcus anginosus subsp. whileyi;x__Streptococcus anginosus subsp. whileyi MAS624


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_organism_name: uncultured Mycoplasma sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas sp. NY15367

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: South Korea

ncbi_isolation_source: Microcystis bloom

ncbi_organism_name: Curvibacter microcysteis

ncbi_submitter: Korea Research Institute of Bioscience & Biotechnology


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Leifsonia poae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Haiti

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Florida


ncbi_country: New Zealand: Auckland

ncbi_isolation_source: Meola Reef Park storm water drain

ncbi_submitter: Massey University


ncbi_organism_name: Acidithiobacillus sp.

ncbi_submitter: University of Waterloo


ncbi_country: USA: Massachusetts

ncbi_organism_name: Rhizobium sp. ASV20

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Proteiniphilum sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: MN

ncbi_isolation_source: root

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Escherichia coli

ncbi_submitter: UCSD Health


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Subdoligranulum sp.


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_country: China: Henan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_country: Colombia: Atlantico

ncbi_isolation_source: Continental Water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Center for Bioinformatics and Computational Biology of Colombia BIOS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_submitter: UMCU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus S2397


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: EMG


ncbi_country: Canada: Calgary

ncbi_isolation_source: blood

ncbi_submitter: University of Toronto


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Clear Labs, Inc.


ncbi_organism_name: Alcanivoracaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Canada

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: Clostridium celatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Ghana: Kumasi

ncbi_isolation_source: hand

ncbi_submitter: University of KwaZulu Natal


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Singapore

ncbi_isolation_source: hand hygiene sink aerator of the cardio-thoracic ICU ward of National University Hospital

ncbi_organism_name: Elizabethkingia anophelis NUH1

ncbi_submitter: SCELSE


ncbi_organism_name: Hungateiclostridiaceae bacterium KB18

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus lactis;sb__Lactococcus lactis subsp. lactis;x__Lactococcus lactis subsp. lactis JCM 5805 = NBRC 100933


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Syntrophomonas sp. UBA4878

ncbi_submitter: University of Queensland


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Wolbachia endosymbiont of Nasonia vitripennis

ncbi_submitter: Auburn University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: FACULDADE DE MEDICINA DE SAO JOSE DO RIO PRETO FAMERP


ncbi_organism_name: uncultured Vampirovibrionales bacterium


ncbi_organism_name: Kingella oralis

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Arthrobacter sp. LjRoot14

ncbi_submitter: Aarhus University


ncbi_organism_name: Streptomyces cyaneofuscatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Candidatus Binataceae bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;x__unclassified Candidatus Binataceae;s__Candidatus Binataceae bacterium


ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: Candidatus Flemingiibacterium sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Flemingiibacterium;x__unclassified Candidatus Flemingiibacterium;s__Candidatus Flemingiibacterium sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Canada: Lacombe

ncbi_submitter: AAFC


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Dekas Lab, Stanford University


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of verona


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Portland State University


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA

ncbi_isolation_source: JOINT

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Planctomycetales bacterium


ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: EMG


ncbi_country: India: Tripura

ncbi_isolation_source: water stored on latex collecting cup from wastes of rubber industry

ncbi_organism_name: Nocardia sp. BSTN01

ncbi_submitter: University of Calcutta


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured beta proteobacterium


ncbi_isolation_source: pork salami

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Paraburkholderia bannensis

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: USA: Ingham County; MI

ncbi_isolation_source: Lansing Lake

ncbi_organism_name: Microcystis aeruginosa LG13-13

ncbi_submitter: University of Michigan


ncbi_country: China: Taiyuan

ncbi_isolation_source: air

ncbi_organism_name: Roseomonas xinghualingensis

ncbi_submitter: Shanxi Eye Hospital


ncbi_country: China: Qingdao

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: China Agricultural University


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: shanghai pulmonary hospital


ncbi_isolation_source: sludge from a mesophilic anaerobic wastewater digester enriched on phosphite and carbon dioxide

ncbi_organism_name: Proteiniphilum sp. EBM-41

ncbi_submitter: UC Berkeley


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: South Korea

ncbi_isolation_source: roots

ncbi_organism_name: Paenibacillus elgii

ncbi_submitter: Universidade catolica de brasilia


ncbi_country: United Kingdom

ncbi_isolation_source: wheat rhizosphere from Bare Fallow land

ncbi_organism_name: Pseudomonas sp. BF-R-12

ncbi_submitter: Rothamsted Research


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Sneathia sp.


ncbi_country: China: Ningxia

ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Anaerovoracaceae bacterium


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Mycobacterium scrofulaceum

ncbi_submitter: San Raffaele Scientific Institute


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Geminicoccaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Novacetimonas hansenii

ncbi_submitter: Lodz University of Technology


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_country: Japan: Saga

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: University of Otago

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_country: China: Panyu

ncbi_isolation_source: wound secretion

ncbi_submitter: Guangzhou Medical University


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: CENTRAL RESEARCH INSTITUTE OF FOOD AND FEED CONTROL


ncbi_country: Venezuela

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sustainable Study and Research Institute


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Italy: Frasassi caves

ncbi_isolation_source: sediment-water interface in an artificial aquarium in the Frasassi cave system

ncbi_organism_name: Chlorobium limicola

ncbi_strain_identifiers: Frasassi

ncbi_submitter: Pennsylvania State University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_assembly_name: Leucobacter salsicius M1-8T draft genome

ncbi_isolation_source: Korean salt-fermented food  Shrimp Jeotgal

ncbi_organism_name: Leucobacter salsicius M1-8

ncbi_submitter: Kyunghee University


ncbi_organism_name: Mycolicibacterium sp. 120322

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Thailand

ncbi_isolation_source: raw shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Neisseria sp. HMSC075C12

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Roseiarcus sp.


ncbi_organism_name: Rhizobium johnstonii 3841

ncbi_submitter: Sanger Institute


ncbi_country: Canada: Alberta

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_organism_name: Treponema sp.


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: PMM port 1 of International Space Station

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;x__unclassified Candidatus Margulisiibacteriota;s__Candidatus Margulisiibacteriota bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Mahidol University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shanghai Jiao Tong University School of Medicine


ncbi_country: Portugal: Amadora-Sintra

ncbi_isolation_source: Intraabdominal infection

ncbi_organism_name: Escherichia coli O25b:H4-ST131

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: uncultured Omnitrophica bacterium

ncbi_submitter: European Institute of the Sea (IUEM) - France

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__environmental samples;s__uncultured Omnitrophica bacterium


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: AAFC


ncbi_country: Germany

ncbi_isolation_source: nose swab

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Veillonella dispar


ncbi_isolation_source: gut of vertebrate mammal

ncbi_organism_name: Prevotella sp. UBA630

ncbi_submitter: University of Queensland


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecium 513

ncbi_submitter: Washington University


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Graduate School of Regional Development and Creativity, Utsunomiya University


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA