ncbi_assembly_name: freshwater MAG --- A-3_bin-219

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: BILS


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: China: Jiaxing

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the Second Affiliated Hospital of Jiaxing University


ncbi_isolation_source: chronic granulomatous disease patient at the NIH clinical center in Bethesda; MD; USA

ncbi_organism_name: Burkholderia multivorans CGD2M

ncbi_submitter: The J. Craig Venter Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Paraprevotella sp.

ncbi_submitter: EMG


ncbi_country: Singapore

ncbi_isolation_source: fecal sample PR170 from 1 month old male Malay infant; vaginal delivered; breastfeeding and formula feeding at 1 month; eczema by 2 years of age

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: National University of Singapore


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_assembly_level: Complete Genome

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: uncultured Micavibrio sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_country: South Korea: Daejeon city

ncbi_isolation_source: water

ncbi_organism_name: Phenylobacterium aquaticum

ncbi_refseq_category: reference genome

ncbi_submitter: Bacterial diversity in glacio-marine environment of Arctic

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Leclercia adecarboxylata


ncbi_isolation_source: Human feces

ncbi_organism_name: Prevotella sp. LMAG:51

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Pseudomonas reidholzensis

ncbi_strain_identifiers: CCOS 865

ncbi_submitter: JLU


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA: Echo Lake; Montana

ncbi_isolation_source: lake water

ncbi_organism_name: Methylovulum sp.

ncbi_submitter: University of Montana


ncbi_organism_name: Nitriliruptor sp.

ncbi_submitter: Centro de Astrobiologia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Medical Microbiology, Maastricht University Medical Center


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Fusobacterium perfoetens


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Southern Federal University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: phycosphere of toxic marne Dinoflagellate

ncbi_organism_name: bacterium

ncbi_submitter: Zhejiang Ocean University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Guangdong Academy of Forestry


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Nanjing University


gtdb_type_species_of_genus: t

ncbi_organism_name: Jhaorihella thermophila

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Paracoccus cavernae

ncbi_strain_identifiers: CECT 8482


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Institut Pasteur de Dakar


ncbi_submitter: Plant Pathology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas fragariae (ex Marin et al. 2024)


ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Klebsiella aerogenes KCTC 2190

ncbi_strain_identifiers: KCTC 2190

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Hungary: Kecskemt

ncbi_isolation_source: Anaerobic sludge from Kecskemt Biogas Plant

ncbi_organism_name: Atribacterota bacterium

ncbi_submitter: University of Szeged


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_assembly_name: freshwater MAG --- Loclat_bin-05108

ncbi_organism_name: uncultured Fibrobacterota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;x__environmental samples;s__uncultured Fibrobacterota bacterium


ncbi_organism_name: Neisseria sp. P0013.S007

ncbi_submitter: Rochester Institute of Technology


ncbi_country: Italy:Voltri Massif; Liguria

ncbi_isolation_source: Voltri Massif travertine

ncbi_organism_name: Bacillales bacterium UBA660

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__unclassified Bacillales;s__Bacillales bacterium UBA660


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: Monash University


ncbi_submitter: Center for Microbial Communities


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_submitter: The University of Queensland


ncbi_country: Bulgaria: Momchilvotsi; Plovdiv

ncbi_isolation_source: Bulgarian homemade fermented milk

ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: MI

ncbi_isolation_source: cloacae

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Mexico: Yucatan

ncbi_organism_name: Escherichia albertii

ncbi_submitter: CINVESTAV-IPN


ncbi_country: South Korea: Jeju-do

ncbi_isolation_source: sponge

ncbi_organism_name: Ruegeria spongiae

ncbi_submitter: Hannam University


ncbi_country: USA: Shingle Springs city on El Dorado county

ncbi_isolation_source: Biological material: laceration near coffin joint

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_country: China: Maanshan Magnetite Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Neptunomonas phycophila

ncbi_submitter: Tang lab


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BGI


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_organism_name: Blautia sp.


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: University of British Columbia


ncbi_country: India: Vellore

ncbi_isolation_source: stool

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Christian Medical College


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Zhejiang

ncbi_isolation_source: laboratory

ncbi_submitter: zhejiang University


ncbi_country: India: Tamil Nadu

ncbi_submitter: SAHMRI


ncbi_country: China

ncbi_organism_name: Nocardioides campestrisoli

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: Australia: Tasmania

ncbi_submitter: University of Otago

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Rhizobium/Agrobacterium group;g__Rhizobium;s__Rhizobium leguminosarum;x__Rhizobium leguminosarum bv. trifolii;x__Rhizobium leguminosarum bv. trifolii TA1


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Ready-to-eat fermented meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Canadian Food Inspection Agency


ncbi_isolation_source: Caecum

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- LJ-5-9m_bin-0079

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: South Korea: Suncheon-si

ncbi_isolation_source: wet soil

ncbi_organism_name: Pseudomonas sp. MMS21 TM103

ncbi_strain_identifiers: MMS21 TM103

ncbi_submitter: Chungnam National University


ncbi_organism_name: Acidovorax facilis

ncbi_submitter: department of plant and microbial biology


ncbi_assembly_name: Rumen uncultured genome RUG14138

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Nonomuraea sp. 3-1Str

ncbi_submitter: Lomonosov Moscow State University


ncbi_country: France: Bretagne

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_isolation_source: environmental swab

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 635290-58


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides distasonis ATCC 8503

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides distasonis;x__Parabacteroides distasonis ATCC 8503


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Brazil

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Pontificia Universidade Catolica do Rio Grande do Sul


ncbi_organism_name: Escherichia coli

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: South Korea: Namwon

ncbi_isolation_source: soil

ncbi_organism_name: Priestia megaterium

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_country: China: Guizhou province

ncbi_isolation_source: rhizosphere soil of Gentiana dipteris

ncbi_organism_name: Herbiconiux gentiana

ncbi_submitter: Institute of Medicinal Biotechnology


ncbi_country: United Kingdom: Northumberland; Cockle Park Experimental Farm

ncbi_organism_name: Williamsia faeni

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: NE

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Tibet

ncbi_organism_name: Yersinia pestis

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_country: Germany: Muenster

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: University Hospital Muenster


ncbi_country: Australia

ncbi_isolation_source: mucosal tissue from Crohns disease patient

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Queensland


ncbi_country: USA: NARMS

ncbi_isolation_source: chicken carcass rinsate

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: USDA-ARS-USNPRC-RRC


ncbi_country: Canada: Toronto

ncbi_isolation_source: vaginal microbiome

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Saskatchewan


ncbi_country: USA

ncbi_isolation_source: tissue

ncbi_organism_name: Bacteroides fragilis str. 3998T(B)3

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides fragilis;x__Bacteroides fragilis str. 3998T(B)3


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: India: Khirganga hotspring; Himachal Pradesh; Northern Hiamayas

ncbi_isolation_source: microbial mat

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: University of Delhi


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: United Kingdom Health Security Agency


ncbi_country: Germany: Berlin

ncbi_isolation_source: Perineum swab

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Desulfoplanes sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Montreal

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Netherlands

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Streptococcus agalactiae MRI Z1-198

ncbi_submitter: The J. Craig Venter Institute


ncbi_isolation_source: Dairy starter

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Radboudumc


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_country: Czech Republic

ncbi_isolation_source: liver

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Rutgers University


ncbi_country: South Korea: Jinju

ncbi_isolation_source: Vaginal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_submitter: National Animal Disease Center


ncbi_country: Poland: Gdansk

ncbi_isolation_source: urine

ncbi_submitter: The University of Leicester


ncbi_country: Brazil: Sobradinho

ncbi_isolation_source: kidney

ncbi_organism_name: Citrobacter sp. On2M

ncbi_submitter: UFTM


ncbi_organism_name: Mesorhizobium sp. M0817

ncbi_submitter: Washington State University


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: ceaca

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_organism_name: Enterococcus faecium C68

ncbi_submitter: Broad Institute


ncbi_organism_name: Staphylococcus aureus VET0470R


ncbi_country: Nepal: Ralpa-Ramdi

ncbi_isolation_source: Wild animal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Leibniz Institute of Photonic Technology (IPHT)


ncbi_organism_name: Oceanobacillus sp. FSL K6-2867

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Oceanobacillus;x__unclassified Oceanobacillus;s__Oceanobacillus sp. FSL K6-2867


ncbi_country: Australia: Brisbane; QLD; University of Queensland

ncbi_isolation_source: AOM-Mn bioreactor day 314

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Norway

ncbi_isolation_source: Blood culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: St. Olav University Hospital


ncbi_isolation_source: sediment

ncbi_organism_name: Deferribacteraceae bacterium


ncbi_isolation_source: mouse cecum

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: CENTRO SUPERIOR DE INVESTIGACION EN SALUD PUBLICA


ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Teagasc Food Research Centre, Ireland


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Texas

ncbi_isolation_source: laboratory

ncbi_organism_name: Nocardia sp. MDA0666

ncbi_submitter: Rice University


ncbi_country: China: Beijing

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas tumuqii

ncbi_submitter: Institute of Agricultural Resources and Regional Planning, Chinese Academyof Agricultural Sciences


ncbi_isolation_source: lake water

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Kilo Moana Hydrothermal plume 60m

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: Lomonosov Moscow State University, Faculty of Biology


ncbi_country: Finland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus FVRH6002


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: University of Oxford


ncbi_isolation_source: respiratory tract

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: RIVM


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea sediment

ncbi_organism_name: Croceicoccus sp. Ery5

ncbi_submitter: The Second institute of Oceanography


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: EBI


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Acholeplasmataceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: India: Kolkata

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Russia

ncbi_isolation_source: 6th dilution order of 2-month-old decomposing straw

ncbi_organism_name: Cellulomonas sp.

ncbi_submitter: ARRIAM


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: sepsis

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_country: Brazil: Para

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Universidade Federal do Para


ncbi_country: USA: PA

ncbi_isolation_source: Bulk tank milk (dairy cow farm)

ncbi_submitter: USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: China: Shanghai

ncbi_isolation_source: clinic

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Shanghai Municipal ceter for disease control & prevention


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: Pakistan: Hattar

ncbi_isolation_source: Rhizosphere of Cannabis sativa

ncbi_organism_name: Serratia nematodiphila

ncbi_submitter: Fatima Jinnah Women University


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Taiwan: Taoyuan City

ncbi_organism_name: Streptococcus taonis

ncbi_submitter: Ming Chuan University


ncbi_isolation_source: patients with disseminated infection

ncbi_organism_name: Mycobacterium conspicuum

ncbi_submitter: Uppsala University


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Canada: Labrador Sea

ncbi_isolation_source: Microcosm inoculated with Labrador Shelf sediment and amended with petroleum hydrocarbons

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Emergencia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Kenya

ncbi_isolation_source: MMUST Wastewater treatment plant

ncbi_submitter: MMUST biological


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus vallismortis

ncbi_submitter: Kyungpook National University


ncbi_country: Belgium: Wallonia

ncbi_isolation_source: liver

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liege


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh


ncbi_country: USA: Minnesota

ncbi_isolation_source: throat

ncbi_organism_name: Haemophilus sputorum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Rhizobium/Agrobacterium group;g__Rhizobium;s__Rhizobium leguminosarum;x__Rhizobium leguminosarum bv. trifolii;x__Rhizobium leguminosarum bv. trifolii WSM2304


ncbi_organism_name: Streptomyces parvus

ncbi_submitter: QHU


ncbi_organism_name: Cetobacterium sp.

ncbi_submitter: China Agricultural University


ncbi_assembly_level: Chromosome

ncbi_country: Ghana

ncbi_isolation_source: disease

ncbi_organism_name: Treponema pallidum subsp. pertenue

ncbi_submitter: Veterinary Research Institute


ncbi_country: USA: WA

ncbi_isolation_source: blood

ncbi_submitter: FDA/CFSAN


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli BCE001_MS16

ncbi_submitter: IGS


ncbi_country: China

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Zhejiang provincial center for disease control and prevention


ncbi_isolate: Lagria villosa

ncbi_organism_name: Burkholderia sp.

ncbi_strain_identifiers: Lagria villosa

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: Mid-Stream Urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_country: United Kingdom: Scotland; Edinburgh

ncbi_submitter: The Roslin Institute


ncbi_country: Spain


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: tuberous root of sweet potato

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: Nagoya University


ncbi_assembly_name: IMG-taxon 2654588173 annotated assembly

ncbi_organism_name: Acidaminococcus fermentans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Philippines

ncbi_isolation_source: lung

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA

ncbi_isolation_source: Stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: CDC


ncbi_country: Finland

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_submitter: The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Toho university


ncbi_organism_name: Vibrio sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EBI


ncbi_organism_name: uncultured Mucispirillum sp.

ncbi_submitter: EMG


ncbi_isolation_source: Human stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: university of burgos


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Shantou University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Candidatus Nanopelagicus sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Nanopelagicus;x__unclassified Candidatus Nanopelagicus;s__Candidatus Nanopelagicus sp.


ncbi_organism_name: Roseburia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolate: SPRUCE 627

ncbi_organism_name: Terriglobales bacterium

ncbi_strain_identifiers: SPRUCE 627

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: Zhejiang University


ncbi_organism_name: Vibrio campbellii

ncbi_submitter: National Fisheries Research and Development Institute - Philippines


ncbi_organism_name: Pseudonocardia yunnanensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Zetaproteobacteria bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatius Mariprofundia;x__environmental samples;s__uncultured Zetaproteobacteria bacterium


ncbi_organism_name: Clostridium fessum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salinimicrobium sp. TIG7-5_MAKvit

ncbi_submitter: CSIR-IMTECH


ncbi_country: Arctic Ocean: Beaufort Sea

ncbi_isolation_source: marine waters

ncbi_submitter: Concordia University


ncbi_organism_name: uncultured Gaiellaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Akkermansia sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: uncultured Acholeplasmataceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Rouen Normandy University


ncbi_organism_name: Devosia sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Streptomyces griseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Pigmentiphaga sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yangzhou University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_isolate: metabat2_XCR1_HET_6741_bwa.143 MAG

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_strain_identifiers: metabat2_XCR1_HET_6741_bwa.143 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Bacillales bacterium UBA6259

ncbi_submitter: University of Queensland


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Wits University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Pseudomonas sp. R3-56

ncbi_submitter: KAUST


ncbi_organism_name: Candidatus Njordibacter sp. Uisw_056

ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Candidatus Njordibacteraceae;g__Candidatus Njordibacter;x__unclassified Candidatus Njordibacter;s__Candidatus Njordibacter sp. Uisw_056


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_organism_name: Pectobacterium sp. CHL-2024

ncbi_submitter: Yunnan Academy of Tobacco Agricultural Sciences


ncbi_organism_name: Terasakiella sp. 4MB5A

ncbi_submitter: Lund University


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: Iowa State University


ncbi_country: Nepal

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_isolation_source: faecal

ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Spribille Lab


ncbi_country: South Korea

ncbi_isolation_source: Traditional fermented soybean pastes

ncbi_organism_name: Bacillus velezensis

ncbi_strain_identifiers: SCGB 574

ncbi_submitter: Microbial Institute for Fermentation Industry

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1539

ncbi_submitter: Broad Institute


ncbi_country: USA: Miami

ncbi_isolation_source: sputum

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Burkholderia sp. AU19243

ncbi_submitter: University of Michigan


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute for Communicable Disease


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Clostridium acetobutylicum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: freshwater MAG --- Erken-D9_bin-0968

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Pelagibacterium nitratireducens

ncbi_submitter: China Agricultural University


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Italy

ncbi_isolation_source: bovine Stool

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: Germany

ncbi_isolation_source: cheese-sausage mixture

ncbi_organism_name: Clostridium tyrobutyricum

ncbi_submitter: University of Natural Resources and Life Sciences Vienna (Universitaet fuer Bodenkultur Wien)


ncbi_country: China: Jiangmen

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella sp. 15E557

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: BGI


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Clostridiaceae bacterium


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P4 gut compartment

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_submitter: SC


ncbi_organism_name: Helicobacter pylori wls-5-2

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_submitter: University of Bern


ncbi_organism_name: Alteromonas oceani

ncbi_submitter: Xiamen University


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Thalassospira sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Segatella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: Lap

ncbi_submitter: Hubei University


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Zhejiang

ncbi_isolation_source: sewage water

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Granulosicoccaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Tang lab


ncbi_country: Singapore: Singapore

ncbi_organism_name: Neisseria subflava

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Beijing macro&micro-test Bio-Tech Co.Ltd


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: addis ababa university


ncbi_country: USA: Pennsylvania;Pittsburgh

ncbi_isolation_source: lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_organism_name: uncultured Sulfitobacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: Helicobacter apodemus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Turkey: Samsun

ncbi_organism_name: Micromonospora sp. C31

ncbi_submitter: Ondokuz Mayis University


ncbi_country: Australia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Technology, Sydney


ncbi_strain_identifiers: LT2 KO STM3513

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: marine sand

ncbi_organism_name: Sneathiella chungangensis

ncbi_submitter: Chung-Ang University


ncbi_organism_name: Enterococcus sp. GC37

ncbi_submitter: Northwest A & F University


ncbi_country: China

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_organism_name: Pseudomonas sp.


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Lactomason Ltd.


ncbi_isolate: Fecal samples

ncbi_isolation_source: LBC

ncbi_strain_identifiers: Fecal samples


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Inha University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Shewanella algae

ncbi_submitter: Sanya Peoples Hospital


ncbi_country: China: Guangzhou

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: The First Affiliated Hospital of Sun Yat-sen University, Guangzhou, China


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Blautia obeum


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_strain_identifiers: ATCC 638

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Paraclostridium;s__Paraclostridium bifermentans;x__Paraclostridium bifermentans ATCC 638 = DSM 14991


ncbi_country: Canada: Ontario

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas syringae pv. tomato

ncbi_strain_identifiers: Pst DC 00T4A

ncbi_submitter: Ottawa Research and Development Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. tomato


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_submitter: South China Agricultural University


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: enrichment of activated sludge from Daejeon WWTP

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: KAIST


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: Tissue

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_organism_name: Providencia sp. TYF-12

ncbi_submitter: WenZhou Medical University


ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_country: Ireland: Johnstown Castle; Wexford

ncbi_isolation_source: Grass with Chicken Manure

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: GP T3 LAM CEF 1

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Yangzhou University


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. salamae;x__Salmonella enterica subsp. salamae serovar 48:d:z6


ncbi_country: India

ncbi_isolation_source: river water

ncbi_organism_name: Brucella anthropi 60a

ncbi_submitter: University of Georgia


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Avichristensenella;s__Candidatus Avichristensenella intestinipullorum


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_organism_name: Streptomyces mutabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Indian Ocean

ncbi_isolation_source: deep-sea water

ncbi_organism_name: Pararhodobacter sp. SW119

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Parvibaculaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Smithella sp.

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Hangzhou

ncbi_isolation_source: Vaginal secretion

ncbi_organism_name: Mobiluncus mulieris

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Duodenibacillus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: University of Leicester


ncbi_country: Brazil: Cidreira

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Federal University of Health Sciences of Porto Alegre


ncbi_organism_name: Bacillus cereus group sp. MS39

ncbi_submitter: Korea Food Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MS39


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Megasphaera sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: in vitro mutant of the strain MUH-1

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Heidelberg University Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Lactobacillus iners


ncbi_organism_name: Comamonas kerstersii


ncbi_organism_name: uncultured Bilophila sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Blautia sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Vibrio tubiashii

ncbi_submitter: Bivalve Hatchery Health Consortium


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mutans TCI-96

ncbi_submitter: JCVI


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Ligilactobacillus aviarius


ncbi_organism_name: Streptomyces albiaxialis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Universiteit Antwerpen


ncbi_country: USA: GA

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: cecum

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Netherlands

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 2334

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Ruminococcus sp.


ncbi_country: USA: California; Pasadena; JPL; Building 179

ncbi_isolation_source: cleanroom floor

ncbi_organism_name: Priestia megaterium

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_submitter: Bangladesh Livestock Research Institute


ncbi_organism_name: Arenimonas sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Monash University


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_submitter: Carleton Univeristy


ncbi_country: China: Shenzhen

ncbi_isolation_source: shrimp

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: City University of Hong Kong


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Segatella;s__Segatella maculosa;x__Segatella maculosa DSM 19339 = JCM 15638


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: tissue

ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_submitter: SC


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Cow

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University Hospital Basel


ncbi_isolation_source: Subgingival plaque; from a periodontal pocket at least 6mm deep

ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: Melbourne Dental School, University of Melbourne


ncbi_country: South Korea

ncbi_isolation_source: freshwater

ncbi_organism_name: Runella sp. SP2

ncbi_submitter: Nakdonggang National Institute of Biological Resource

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Spirosomataceae;g__Runella;x__unclassified Runella;s__Runella sp. SP2


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: Laos

ncbi_isolation_source: River

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: University of Bern


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Actinotignum sanguinis

ncbi_submitter: Loyola University Chicago


ncbi_country: China

ncbi_isolation_source: duck cloacal

ncbi_submitter: Sichuan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kastrup


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Brazil: Rio de Janeiro

ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Fundacao Oswaldo Cruz


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Tenacibaculum dicentrarchi

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: Northeastern University


ncbi_country: Reunion: Saint-Denis

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: CHU de Rennes


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;s__Candidatus Doudnabacteria bacterium CG10_big_fil_rev_8_21_14_0_10_41_10


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Greece: Epirus

ncbi_isolation_source: Greek mizithra cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: STATENS SERUM INSTITUT


ncbi_isolate: SPRUCE 370

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_strain_identifiers: SPRUCE 370

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Methylomarinum sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Colwellia sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Defluviitaleaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Paludibacteraceae bacterium


ncbi_organism_name: Endozoicomonas sp.

ncbi_submitter: Monash University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SBM Research Institute of Rospotrebnadzor


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Thermoleophilaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces decoyicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejianglab


ncbi_organism_name: Rickettsia conorii subsp. raoultii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia conorii;sb__Rickettsia conorii subsp. raoultii


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: Microba


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Thailand: Satun

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Candidatus Aquicultor secundus

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Candidatus Aquicultoria;o__Candidatus Aquicultorales;f__Candidatus Aquicultoraceae;g__Candidatus Aquicultor;s__Candidatus Aquicultor secundus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Candidatus Aquicultoria;o__Candidatus Aquicultorales;f__Candidatus Aquicultoraceae;g__Candidatus Aquicultor;s__Candidatus Aquicultor secundus


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Bacillales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Spirochaetaceae bacterium


ncbi_country: Chile: Valdivia

ncbi_isolation_source: Poultry meat

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Universidad Austral de Chile


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Lachnospira eligens


ncbi_organism_name: Micromonospora endolithica

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- MJ130729B_bin-369

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Clostridium saccharobutylicum

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: ventricular fluid of fetus

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Sphingobacterium;s__Sphingobacterium mizutaii;x__Sphingobacterium mizutaii NBRC 14946 = DSM 11724


ncbi_isolation_source: soil of the ginseng field

ncbi_organism_name: Pedobacter ginsengisoli

ncbi_strain_identifiers: Gsoil 104

ncbi_submitter: Korea University


ncbi_country: USA: Washington DC

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: WRAIR


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Sri Lanka: Kurunegala

ncbi_isolation_source: Exorhizosphere rice

ncbi_organism_name: Pseudomonas wayambapalatensis

ncbi_submitter: KU Leuven


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: Tecnologico de Monterrey


ncbi_country: Switzerland

ncbi_isolation_source: poultry

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_organism_name: Lacrimispora sp.


ncbi_country: China: Weihai

ncbi_organism_name: Exiguobacterium sp. s132

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. s132


ncbi_country: Russia

ncbi_isolation_source: plant

ncbi_organism_name: Rathayibacter sp. VKM Ac-2805

ncbi_strain_identifiers: VKM Ac-2805

ncbi_submitter: PSCBR RAS G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Odense University Hospital


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: China Medical University


ncbi_isolation_source: ANIMAL-chicken

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120580


ncbi_organism_name: uncultured Rubrivivax sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Shandong

ncbi_isolation_source: nodule

ncbi_organism_name: Bradyrhizobium sp. CCBAU 25360

ncbi_strain_identifiers: CCBAU 25360

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Maroochydoore River

ncbi_organism_name: Nitrospiraceae bacterium UBA6905

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides eggerthii


ncbi_country: South Africa: Edendale

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0053

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Hoylesella nanceiensis

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Spirochaetaceae bacterium


ncbi_country: USA: Wisconsin

ncbi_isolation_source: water from Lab-scale nutrients removal reactor

ncbi_organism_name: Nitrospira sp. UW-LDO-01

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus GD2010-155


ncbi_organism_name: Gaiella sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MRSN BI Team


ncbi_isolation_source: Caecum

ncbi_organism_name: Turicimonas muris


ncbi_isolation_source: human gut

ncbi_organism_name: Culturomica massiliensis


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_country: India: Kolkata

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universidade Federal de Vicosa


ncbi_country: China

ncbi_submitter: Sir Run Run Shaw Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Yersinia pseudotuberculosis B-6865

ncbi_submitter: UPSUD


ncbi_country: Viet Nam

ncbi_isolation_source: raw shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Caldimonas sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: MD

ncbi_organism_name: Burkholderia dolosa

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Tang lab


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Azospirillum sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Bacillus sp. FSL K6-3200

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL K6-3200


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: AAFC


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_isolation_source: potato-based retail food product

ncbi_organism_name: Bacillus cytotoxicus

ncbi_submitter: University of Zurich


ncbi_country: India

ncbi_organism_name: Mycobacterium sp. GA-1199

ncbi_submitter: JCVI


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Italy: Viterbo

ncbi_isolation_source: solfataric muds

ncbi_organism_name: Clostridium tepidum

ncbi_submitter: Institute for Environmental Health


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: Universidade de Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Jyvaskyla


ncbi_isolation_source: animal

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Paraclostridium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Colombia: Cundinamarca

ncbi_isolation_source: Soil

ncbi_organism_name: Lysinibacillus sphaericus

ncbi_submitter: Universidad de los Andes


ncbi_submitter: MRSN BI Team


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Bacillus sp. FSL K6-3149

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL K6-3149


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Rothia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Monash University


ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: India: Chandigarh

ncbi_isolation_source: Skin sample

ncbi_submitter: Post Graduate Institute of Medical Education & Research (PGIMER), Chandigarh


ncbi_organism_name: Proteus columbae

ncbi_submitter: Washington University


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: White filamentous biomass growing on seagrass stems near kelp deposits on a beach at Helgoland

ncbi_organism_name: uncultured Sulfurovum sp.

ncbi_submitter: MPIBREMEN


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_country: Thailand


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella sp. 98516

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: UIUC


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: USA:Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_assembly_name: IMG-taxon 2663762782 annotated assembly

ncbi_organism_name: Pseudomonas indica

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: isolated from contaminated platelets

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Health Canada


ncbi_country: China: Zhejiang

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Peru: Lima

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: USA: AR

ncbi_isolation_source: Young Chickens

ncbi_organism_name: Enterococcus durans

ncbi_strain_identifiers: CVM N59549F

ncbi_submitter: FDA


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Sweden

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Leuven - KU Leuven


ncbi_organism_name: Vibrio cidicii

ncbi_submitter: CDC


ncbi_organism_name: Methylomonas sp. WH-1

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: uncultured Holosporaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Shenzhen

ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: BGI


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Belgium

ncbi_isolation_source: fecal incubation

ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_country: Poland: Przasnysz

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institiute


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Chicago


ncbi_country: South Korea

ncbi_isolation_source: Water collected from the junction between the ocean and a freshwater spring

ncbi_organism_name: Simiduia curdlanivorans

ncbi_strain_identifiers: CECT 8570

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_country: China: Guangdong

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_organism_name: Methylorubrum aminovorans

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_country: Austria: Vienna

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: JNTUH


ncbi_organism_name: Polynucleobacter necessarius

ncbi_submitter: UNIVERSITY OF BRITISH COLUMBIA, DEPT BOTANY


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: uncultured Parasutterella sp.


ncbi_organism_name: Myxococcaceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a a 3.0 um filter and then through a 0.2 um filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium CG1_02_37_13


ncbi_isolation_source: Manis javanica

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: microbial pathogenic ecology group


ncbi_country: Brazil: Uberlandia

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: Northeastern University


ncbi_country: China: Guangzhou

ncbi_isolation_source: forest soil

ncbi_organism_name: Acidobacteriaceae bacterium ZG23-2

ncbi_submitter: Sun Yat-sen University


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Alberta


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_organism_name: Lentimicrobiaceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: Candidatus Cloacimonadaceae bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;x__unclassified Candidatus Cloacimonadaceae;s__Candidatus Cloacimonadaceae bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Wageningen University


ncbi_country: Switzerland

ncbi_isolation_source: rectal swab

ncbi_submitter: University of Bern


ncbi_country: China

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Shanghai Children's Hospital


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: the seqafrica consortium


ncbi_country: Japan: Kanto

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: human gut

ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter junii

ncbi_submitter: Zhejiang University


ncbi_country: Argentina

ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Rowan University


ncbi_organism_name: Candidatus Cybelea sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__Candidatus Cybelea;x__unclassified Candidatus Cybelea;s__Candidatus Cybelea sp.


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Serratia nevei

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: TCFB 4540

ncbi_submitter: The University of Queensland


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Semmelweis University


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Firmicutes bacterium CAG:341

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:341


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: oxycline seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: the hong kong university of science and technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Nitrososphaerota archaeon

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES

ncbi_taxonomy_unfiltered: d__Archaea;x__Thermoproteati;p__Nitrososphaerota;x__environmental samples;s__uncultured Nitrososphaerota archaeon


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_organism_name: uncultured Coprococcus sp.


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: MRSN BI Team


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_organism_name: Enterococcus sp. DIV1375a

ncbi_submitter: Broad Institute


ncbi_organism_name: Dialister hominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Sphingobacteriales bacterium


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Firmicutes bacterium TM09-10

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium TM09-10


ncbi_organism_name: Streptomyces lydicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Hefei

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: the First Affiliated Hospital of Anhui Medical University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Collinsella sp. TM10-22

ncbi_submitter: BGI


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: SAR86 cluster bacterium

ncbi_submitter: Universidad Andres Bello

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Kribbellaceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: South Korea

ncbi_organism_name: Falsiroseomonas algicola

ncbi_submitter: Chung-Ang University


ncbi_country: Denmark

ncbi_isolation_source: Aborted piglet fetus

ncbi_organism_name: Arcobacter porcinus

ncbi_submitter: USDA, ARS, WRRC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Baskent University Medical Faculty


ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_country: Poland: Suwalki

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus sp. 10824

ncbi_submitter: National Medicines Institute


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Ginsengibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Rothia sp.


ncbi_country: Spain:Coast of Alicante; Western Mediterranean Sea; close to the coast of Guardamar del Segura

ncbi_isolation_source: seawater from mariculture cage of adult gilthead seabream (Sparus aurata)

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Bulgaria: Silistra

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus anthracis

ncbi_strain_identifiers: BUL 32

ncbi_submitter: Bundeswehr


ncbi_country: Canada: Cultus Lake

ncbi_isolation_source: Ixodes pacificus

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: University of Regina


ncbi_country: China: Guangdong

ncbi_organism_name: Pseudomonas juntendi

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Aquatic

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: University of Pennsylvania


ncbi_country: USA: LA

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: MT

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: France

ncbi_isolation_source: eye swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_country: Canada: Alberta;Edmonton

ncbi_isolation_source: rectal swab

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Ectothiorhodospiraceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Agroscope


ncbi_country: Germany

ncbi_isolation_source: semi-finished milk product

ncbi_organism_name: Pseudomonas veronii

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_country: Italy

ncbi_submitter: University of Bologna


ncbi_organism_name: Bradyrhizobium sp. LB14.3

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_country: Malawi: Lilongwe

ncbi_isolation_source: blood culture

ncbi_submitter: NORHED grant


ncbi_country: China: Heze City

ncbi_isolation_source: bark

ncbi_organism_name: Corticibacter populi

ncbi_submitter: National Microbiology Laboratory


ncbi_organism_name: Bradyrhizobium sp. SZCCHNRI1005

ncbi_submitter: The Chinese University of Hong Kong