ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Opitutia bacterium UBA1116

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__unclassified Opitutia;s__Opitutia bacterium UBA1116


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: USA: western arm Lake Superior

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: freshwater cyanobacterial bloom

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: University of Minnesota Duluth


gtdb_representative: f

ncbi_organism_name: Kitasatospora indigofera

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_level: Contig

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces virginiae


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-3717

ncbi_isolation_source: lake water

ncbi_organism_name: Oligoflexia bacterium

ncbi_submitter: BILS


ncbi_country: USA: California

ncbi_isolation_source: leaf litter

ncbi_organism_name: Curtobacterium sp. MCLR17_043

ncbi_submitter: University of California, Irvine


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_isolation_source: human milk

ncbi_organism_name: Lactobacillus paragasseri

ncbi_submitter: university of ljubljana, biotechnical faculty


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Chlamydiae bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;x__environmental samples;s__uncultured Chlamydiae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: BGI


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: meat(body)

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: USA: Damariscotta River in front of the Bigelow Laboratory for Ocean Sciences

ncbi_isolation_source: four week timepoint of microcosm treated with crude oil after inoculation with natural surface seawater; biological replicate 2

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA

ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Colombia: Antioquia; Medellin

ncbi_isolation_source: tracheal aspirate

ncbi_submitter: University of Antioquia


ncbi_country: Antarctica

ncbi_isolation_source: chick trachea

ncbi_organism_name: Flavobacterium sp. I-STPA6A

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: EMG


ncbi_country: China: Beijing

ncbi_isolation_source: vaginal

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_organism_name: Nonomuraea bangladeshensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Zhejiang

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Turkey

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Black Sea Agricultural Research Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bilophila sp.


ncbi_country: Japan:Okinawa; Kiyan cape

ncbi_genome_category: derived from single cell

ncbi_isolation_source: low tide zone

ncbi_organism_name: Okeania sp. KiyG1

ncbi_submitter: Waseda University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Luminiphilus sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Australia

ncbi_isolation_source: saliva

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of New South Wales


ncbi_country: China

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Anaerotignum sp.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Corynebacterium sp.


ncbi_country: Austria: Vienna

ncbi_organism_name: Corynebacterium tapiri

ncbi_refseq_category: reference genome

ncbi_submitter: Chinese center for disease control and prevention

ncbi_type_material_designation: assembly from type material


ncbi_country: Denmark

ncbi_strain_identifiers: Broiler parent116

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Chromobacterium phragmitis

ncbi_submitter: Universidade Estadual de Londrina - UEL


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum


gtdb_type_species_of_genus: t

ncbi_organism_name: Tsukamurella paurometabola DSM 20162

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: biofilm reactor

ncbi_organism_name: Comamonas koreensis

ncbi_submitter: Research Center for Eco-Environmental Sciences


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Anthropogastromicrobium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Norway: Bergen

ncbi_isolation_source: tissue

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Haukeland University Hospital


ncbi_country: USA: Washington

ncbi_isolation_source: parent strain THC 02-90 passaged with rifampicin

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_strain_identifiers: TR

ncbi_submitter: Washington State University


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Bern


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: China: Alar

ncbi_isolation_source: nodules

ncbi_organism_name: Rhizobium alarense

ncbi_submitter: College of Life Sciences


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Greece

ncbi_isolation_source: water

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Agricultural University of Athens


ncbi_organism_name: Methylobacterium ajmalii

ncbi_submitter: Tsinghua University


ncbi_country: Japan

ncbi_isolation_source: urine

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: USA: GA

ncbi_isolation_source: forest

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rubislaw


ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV219

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chad: N Djamena

ncbi_isolation_source: lung

ncbi_submitter: CIRAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma capricolum;sb__Mycoplasma capricolum subsp. capripneumoniae


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_submitter: University of Michigan


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: India: Bikaner

ncbi_isolation_source: C1 compartment fluid of stomach

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: ICAR-National Research Centre on Camel


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: SAR86 cluster bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Anaerotignum sp.


ncbi_isolation_source: Environmental; Sesbania exaltata leaves

ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: USA: Michigan

ncbi_isolation_source: Urine specimen from a nursing home resident with a long-term indwelling urinary catheter

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Buffalo


ncbi_country: Germany: Bavaria

ncbi_isolation_source: high oxygen packaged beef steak (injected with liquid seasoning; 5 %) (+2 CD)

ncbi_organism_name: Dellaglioa algida

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: China: Guangdong

ncbi_isolation_source: swine nasal swab

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_country: China

ncbi_isolation_source: yogurt-like dairy product

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_country: Russia: Elista

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Russian Research Anti-plague Institute "Microbe"


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pakistan: Peshawar

ncbi_isolation_source: Pus

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Umea University


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Geneva University Hospitals


ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_isolation_source: environment

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: URMITE


ncbi_organism_name: Escherichia coli

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: Croatia

ncbi_isolation_source: root nodules

ncbi_organism_name: Rhizobium croatiense

ncbi_submitter: CSIC


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Portugal

ncbi_isolation_source: tap water

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: Universidade Catolica Portuguesa


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium RIFCSPHIGHO2_01_FULL_40_22


ncbi_country: India: Lucknow; Uttar Pradesh

ncbi_isolation_source: nodule

ncbi_organism_name: Bradyrhizobium sp. NBAIM03

ncbi_submitter: university of Oxford


ncbi_country: Argentina

ncbi_isolation_source: vaginal mucus

ncbi_organism_name: Campylobacter fetus

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: United Kingdom: Scotland; Aberdeen; Scottish Rural College (SRUC) Craibstone

ncbi_isolation_source: agricultural soil; 12C-CH4 incubated pH 4.5 or pH 7.5; selected DNA (low %GC) through ClCs fractionation

ncbi_organism_name: Candidatus Babeliales bacterium

ncbi_submitter: Ecole Centrale de Lyon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;x__unclassified Candidatus Babeliales;s__Candidatus Babeliales bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Roseburia sp.


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_country: China: Beijing

ncbi_isolation_source: Abscess

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Kluyvera ascorbata


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Chloroflexia bacterium

ncbi_submitter: East China Normal University


ncbi_country: Japan:Kochi; Nankoku

ncbi_organism_name: Pseudomonas sp. 008

ncbi_submitter: Plant Pathology Faculty of Agriculture, Kyushu University


ncbi_organism_name: Pectobacterium aroidearum

ncbi_submitter: Guangdong Academy of Agricultural Science, P. R. China


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Industrial ABE fermentation

ncbi_organism_name: Clostridium saccharobutylicum

ncbi_submitter: LanzaTech Inc


ncbi_country: Germany

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Queensland


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: University of California, Davis


ncbi_isolation_source: blood

ncbi_submitter: Brigham & Women's Hospital


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_organism_name: Phyllobacteriaceae bacterium

ncbi_submitter: University of South Africa


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: China: Hong Kong SAR

ncbi_isolation_source: partial-nitration anammox reactor sludge sample

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: The East China Sea

ncbi_isolation_source: surface seawater

ncbi_organism_name: bacterium

ncbi_submitter: Ocean University of China


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;c__Candidatus Marinamargulisbacteria;x__environmental samples;s__uncultured Candidatus Marinamargulisbacteria bacterium


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Environmental Microbiology OMICS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: uncultured Bordetella sp.


ncbi_organism_name: Sulfuricurvum sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Carnobacterium divergens

ncbi_submitter: University of Alberta


ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Shantou University


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured Bacteroidaceae bacterium


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_organism_name: Chryseobacterium jejuense

ncbi_submitter: University Bourgogne Franche-Comte, INRAE, Institut Agro Dijon


ncbi_organism_name: Endomicrobiales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SHANDONG UNIVERSITY


ncbi_organism_name: Propionivibrio sp.

ncbi_submitter: EPFL


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Syntrophaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Vulcanimicrobiota bacterium


ncbi_organism_name: Candidatus Spongiihabitans sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Arenicellales;f__Candidatus Poriferihabitaceae;g__Candidatus Spongiihabitans;x__unclassified Candidatus Spongiihabitans;s__Candidatus Spongiihabitans sp.


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gemmatimonadota bacterium


ncbi_organism_name: Listeria innocua

ncbi_submitter: US Food and Drug Administration


ncbi_assembly_name: freshwater MAG --- AM-sed-core2-D0_bin-0552

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_assembly_name: freshwater MAG --- AM-2014-D7_bin-724

ncbi_isolation_source: lake water


ncbi_isolation_source: pig gut metagenome


ncbi_organism_name: Lachnospiraceae bacterium SGI.231

ncbi_submitter: University of Manitoba


ncbi_organism_name: Enterococcus sp. DIV2377

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_organism_name: Proteobacteria bacterium UBA3113

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA3113


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: ECBC


ncbi_organism_name: Mitsuokella jalaludinii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Veillonellaceae bacterium


ncbi_country: Russia: Peter the Great Gulf

ncbi_isolation_source: seawater

ncbi_organism_name: Cyclobacterium amurskyense

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_organism_name: Leclercia adecarboxylata


ncbi_organism_name: Nocardiopsis terrae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Spain

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Complutense de Madrid


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: SC


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Tetragenococcus koreensis

ncbi_submitter: Department of Bioscience, Faculty of Applied Bioscience, Tokyo University of Agriculture


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Sichuan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Hafnia sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Spirochaetia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: cold seep

ncbi_organism_name: Thauera sp.

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Streptococcus anginosus


ncbi_country: Spain: Asturias

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Mediterraneibacter gnavus CC55_001C

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Bartonella sp. AA97HXZ

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Rhodovibrionaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Edwardsiella ictaluri

ncbi_strain_identifiers: NaF-IIUM

ncbi_submitter: International Islamic University Malaysia


ncbi_organism_name: Lysinibacillus xylanilyticus

ncbi_submitter: INIA


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: USA: Boston

ncbi_isolation_source: ocular liquid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Massachusetts Eye and Ear Infirmary


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_assembly_name: Marinimicrobia bacterium OTU 2

ncbi_organism_name: Fidelibacterota bacterium JGI OTU-2

ncbi_strain_identifiers: JGI OTU-2

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__unclassified Fidelibacterota;s__Fidelibacterota bacterium JGI OTU-2


ncbi_assembly_name: IMG-taxon 2582581326 annotated assembly

ncbi_organism_name: Treponema porcinum

ncbi_strain_identifiers: ATCC BAA-908

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Bermuda: Western Sargasso Sea

ncbi_isolation_source: single-cell amplified by MDA; Sargasso Seawater

ncbi_organism_name: Verrucomicrobia bacterium Opi.OSU.00C

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium Opi.OSU.00C


ncbi_isolation_source: human gut

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: EMG


ncbi_organism_name: Geminicoccus sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_country: Sweden: Bothnian Sea

ncbi_isolation_source: Bothnian Sea sediment; site NB8

ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Radboud University Njmegen


ncbi_organism_name: Klebsiella sp. 90403

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Gottfriedia sp. OAE603


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_assembly_level: Chromosome

ncbi_submitter: The University of Georgia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__aphid secondary symbionts;g__Candidatus Williamhamiltonella;s__Candidatus Williamhamiltonella defendens


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Houston Methodist


ncbi_organism_name: Parabacteroides goldsteinii


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_assembly_name: freshwater MAG --- Ki1-2-2m_bin-492

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Veillonella sp.


ncbi_country: Malaysia

ncbi_isolation_source: Gastric Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Malaya-University of Western Australia


ncbi_country: China

ncbi_isolation_source: secretions

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Netherlands

ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Pseudomonas gingeri

ncbi_submitter: Wageningen University & Research


ncbi_assembly_name: Rumen uncultured genome RUG10022

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Corynebacterium tuberculostearicum

ncbi_submitter: University of York


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Korea Centers for Disease Control and Prevention


ncbi_isolation_source: Ocean cavity beneath Ross Ice Shelf

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_assembly_name: freshwater MAG --- A1_bin-814

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_organism_name: Priestia flexa

ncbi_submitter: The Institute of Chemical Biology and Fundamental Medicine SB RAS


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: DOE JGI


ncbi_country: USA: International Space Station

ncbi_isolation_source: ISS environmental surface

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Escherichia albertii

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_submitter: New England Biolabs

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Lachnospiraceae bacterium 10-1


ncbi_assembly_name: IMG-taxon 2654588124 annotated assembly

ncbi_organism_name: Kandleria vitulina

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: India

ncbi_isolation_source: Poultry egg

ncbi_submitter: GADVASU


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Indian River Lagoon; Florida

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Central Florida


ncbi_isolation_source: Intestine

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG14274

ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Teagasc


ncbi_country: USA

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Shigella flexneri 2a


ncbi_organism_name: Atlantibacter hermannii

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Jiangnan University


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Clostridium sp. UBA7615

ncbi_submitter: University of Queensland


ncbi_country: China: Hubei

ncbi_isolation_source: lung

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: California

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, College Park


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cryomorphaceae bacterium

ncbi_submitter: EMG


ncbi_country: Brazil

ncbi_isolation_source: Wound secretion

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_submitter: Translational Health Science and Technology Institute (THSTI)


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Germany

ncbi_isolation_source: Salad

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Max Rubner-Institut


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides merdae


ncbi_isolation_source: Saliva Sample

ncbi_organism_name: Candidatus Nanosynbacter sp. HMT-352

ncbi_submitter: The Forsyth Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;g__Candidatus Nanosynbacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;g__Candidatus Nanosynbacter;x__unclassified Candidatus Nanosynbacter;s__Candidatus Nanosynbacter sp. HMT-352


ncbi_organism_name: Paraburkholderia sp.

ncbi_submitter: Zhejiang University


ncbi_country: Lebanon

ncbi_isolation_source: irrigation water

ncbi_submitter: University of Georgia


ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolate: HCA1 bin32

ncbi_organism_name: Alloprevotella sp.

ncbi_strain_identifiers: HCA1 bin32

ncbi_submitter: China Agricultural University


ncbi_country: Ireland

ncbi_isolation_source: cheese

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University College Cork


ncbi_isolation_source: Human saliva

ncbi_organism_name: Carnobacterium maltaromaticum


ncbi_country: USA: Michigan

ncbi_isolation_source: foot ulcer of a diabetic patient

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pullorum


ncbi_isolation_source: food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Gracilibacteraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 186

ncbi_submitter: Oregon State University


ncbi_country: Taiwan: Hsinchu

ncbi_isolation_source: fruit

ncbi_organism_name: Lactobacillus sp. S2-2

ncbi_submitter: FIRDI


ncbi_organism_name: Desulfofundulus kuznetsovii DSM 6115

ncbi_submitter: US DOE Joint Genome Institute


ncbi_country: France

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: Israel

ncbi_isolation_source: stool

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: Japan: Shiga

ncbi_isolation_source: lake water

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Kyoto University


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_submitter: Dartmouth Medical School

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus NCTC 8325;x__Staphylococcus aureus subsp. aureus RN4220


ncbi_country: China: Yunnan

ncbi_isolation_source: tobacco

ncbi_organism_name: Pseudomonas sp. S150

ncbi_submitter: Chinese Academy of Agricultural Science


ncbi_organism_name: Acinetobacter nosocomialis


ncbi_country: Viet Nam: Hanoi

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Kenya

ncbi_organism_name: Succinatimonas sp. UBA4709

ncbi_submitter: University of Queensland


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: Shenzhen people's hospital


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_submitter: University College Dublin


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Mycobacterium avium subsp. avium

ncbi_submitter: US Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. avium


ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_assembly_name: MRSA Clinical Isolate #10S

ncbi_country: Pakistan: Rawalpindi

ncbi_isolation_source: nasal

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus ST 1413


ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Gastranaerophilales;f__;g__;s__Candidatus Gastranaerophilus phascolarcticola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__Candidatus Gastranaerophilus;s__Candidatus Gastranaerophilus phascolarcticola


ncbi_country: USA

ncbi_isolation_source: Bronchalveolar Lavage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Case Western Reserve University


ncbi_organism_name: Peptoniphilus olsenii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_isolation_source: pus


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Desulfovibrionales bacterium

ncbi_submitter: University of Calgary


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: INRA


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Poland

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: KNOW (Leading National Research Centre) Scientific Consortium “Healthy Animal – Safe Food”


ncbi_isolation_source: cattle feces

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Public Health Laboratory, NPHL, Khartoum, Sudan


ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Weizhou Island

ncbi_isolation_source: rhizospheric soil

ncbi_organism_name: Microbulbifer litoralis

ncbi_submitter: Guangxi Minzu University


ncbi_country: Cameroon

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas phaseoli;x__Xanthomonas phaseoli pv. manihotis;x__Xanthomonas phaseoli pv. manihotis str. Xam672


ncbi_assembly_name: freshwater SAG --- SB-2103-996-G9

ncbi_isolation_source: freshwater

ncbi_organism_name: uncultured Ferrovum sp.

ncbi_submitter: BILS


ncbi_country: Thailand

ncbi_isolation_source: wound

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Ruegeria sp.

ncbi_submitter: University of Connecticut


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: not known


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Bifidobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: Australia

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: The ithree institute


ncbi_isolation_source: urine


ncbi_country: China: Guangdong

ncbi_isolation_source: pig

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: blood


ncbi_country: Switzerland

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Agroscope


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-409-F19

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Actinomyces sp.


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Spongiibacter sp.


ncbi_country: USA: California

ncbi_isolation_source: stool sample

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Thompson


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Veillonella parvula

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Sutterella sp.


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 13ft depth

ncbi_organism_name: Spirochaetes bacterium RBG_13_51_14

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;x__unclassified Spirochaetota;s__Spirochaetes bacterium RBG_13_51_14


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Streptomyces tendae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Western Ontario


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Streptomyces globisporus


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Pilosibacter sp.


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Symbiosis International University


ncbi_organism_name: uncultured Solibacteraceae bacterium


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Chongqing Medical University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zhejiang University


ncbi_organism_name: Kocuria turfanensis

ncbi_submitter: Northeastern University


ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Faecousia sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Bicetre


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Wroclaw University of Environmental and Life Sciences


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Aquificota bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: International Centre for Terrestrial Antarctic Research, University of Waikato, New Zealand


ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillales bacterium


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Niallia taxi

ncbi_strain_identifiers: MER 100

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: Bacillota bacterium


ncbi_assembly_name: freshwater MAG --- LJ-3-15m_bin-0831

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Choladousia sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Choladousia;x__unclassified Candidatus Choladousia;s__Candidatus Choladousia sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Microvirga arabica

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Anaerolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Mycobacterium sp.


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: GIHE(Gyeonggi-do Institute of Health & Environment)


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Athalassotoga sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Slovenia

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides clarus

ncbi_submitter: National laboratory for health, environment and food


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: Indian Ocean

ncbi_isolation_source: sediment

ncbi_organism_name: Alteromonas pelagimontana

ncbi_submitter: NCAOR


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Italy

ncbi_isolation_source: wheat

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_strain_identifiers: CIRM-BIA 912

ncbi_submitter: Brigham Young University


ncbi_organism_name: Providencia stuartii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Candidatus Shapirobacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;x__unclassified Candidatus Shapirobacteria;s__Candidatus Shapirobacteria bacterium


ncbi_organism_name: Bacillus mojavensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus mojavensis


ncbi_organism_name: Macrococcoides caseolyticum

ncbi_submitter: US Food and Drug Administration


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: EPFL


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: Col 13-PUJ

ncbi_submitter: Pontificia Universidad Javeriana


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus sp. AFS094228

ncbi_submitter: UNC Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AFS094228


ncbi_country: Netherlands: Gieterveen

ncbi_isolation_source: mycosphere

ncbi_organism_name: Paraburkholderia hospita

ncbi_submitter: University of Groningen


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Acutalibacter sp.

ncbi_submitter: Biomin Research Center


ncbi_isolation_source: Stool

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: IP


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Malaysia:Kuala Lumpur

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Priestia megaterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Brevifollis sp.


ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite de Limoges


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 99595;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: China: Yunnan

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: household surface

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Mesoplasma grammopterae ATCC 49580

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Yangzhou University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_country: Hong Kong

ncbi_submitter: The Chinese University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces


ncbi_organism_name: Pelagibaca sp.

ncbi_submitter: University of Alicante


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: China: Chengdu

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Brazil: Dourados

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_country: China

ncbi_isolation_source: ocean sediment

ncbi_organism_name: Iamia sp. SCSIO 61187

ncbi_strain_identifiers: SCSIO 61187

ncbi_submitter: south china sea institute of oceanology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Iamiaceae;g__Iamia;x__unclassified Iamia;s__Iamia sp. SCSIO 61187


ncbi_organism_name: Micromonospora phaseoli


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: USA: Texas

ncbi_isolation_source: Granular activated carbon

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Holosporaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Lactobacillus paragasseri

ncbi_submitter: Bened Biomedical Co.


ncbi_country: Austria

ncbi_isolation_source: joint

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Vulcanococcus sp.

ncbi_submitter: University of Southern California


ncbi_country: France

ncbi_organism_name: Enterobacter cloacae complex sp. S2

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. S2


ncbi_submitter: CHU Arnaud de Villeneuve Montpellier


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: mBioClim


ncbi_organism_name: uncultured Lachnoanaerobaculum sp.


ncbi_organism_name: Weissella confusa

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Mycobacterium asiaticum DSM 44297

ncbi_submitter: URMITE


ncbi_country: China: Hebei

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Planktotalea sp.

ncbi_submitter: German Federation for Biological Data


ncbi_country: Australia: Newcastle

ncbi_organism_name: Alistipes putredinis

ncbi_submitter: University of Queensland


ncbi_country: Russia: Yessentuki mineral water deposit

ncbi_isolation_source: groundwater

ncbi_organism_name: Desulfitobacteriaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Sphingobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Achromobacter insuavis

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Mesomycoplasma dispar

ncbi_submitter: University of Missouri - Columbia


ncbi_country: South Africa: North-West; Tswaing

ncbi_organism_name: Campylobacter fetus subsp. fetus

ncbi_submitter: North-West University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMBL-EBI


ncbi_country: USA: SD

ncbi_isolation_source: ileum (Sus scrofa scrofa)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Faecalibacterium sp.


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Pantoea eucalypti

ncbi_submitter: University of Alberta


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Xiamen University


ncbi_isolation_source: freshwater

ncbi_organism_name: Limnothrix sp. FACHB-1083

ncbi_submitter: South China Normal University


ncbi_country: China: Hubei

ncbi_isolation_source: umbilicus

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wuhan CDC


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers of Disease Control


ncbi_country: Denmark: Livoe; old tree

ncbi_organism_name: Streptomyces sp. NBC_01285

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Sputum

ncbi_organism_name: Haemophilus sp. Marseille-P9675

ncbi_submitter: IHU - Mediterranee Infection


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Helicobacter pullorum

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Selenomonas artemidis


ncbi_country: United Kingdom: Sparsholt; Hampshire

ncbi_isolation_source: porcine fecal sample

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Quadram Institute BioScience


ncbi_isolation_source: endotracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_country: Japan: Tokyo

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Iraq: Basrah

ncbi_isolation_source: burn wounds

ncbi_submitter: Al-Basrah University


ncbi_submitter: Nanjing Agricultural University


ncbi_country: Russia: Moscow

ncbi_isolation_source: Bronchial lavage

ncbi_submitter: Gamaleya Research Center for Epidemiology and Microbiology


ncbi_country: China: Wuxi

ncbi_isolation_source: fecal sample

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: Southwest University


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_organism_name: Pseudomonas sp. WC2401

ncbi_submitter: Wellesley College


ncbi_country: Italy

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_isolation_source: human gut

ncbi_organism_name: Aeromonas veronii


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: ocular liquid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Massachusetts Eye and Ear Infirmary


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Sungiibacteriota;s__Candidatus Sungbacteria bacterium RIFCSPLOWO2_12_FULL_41_11


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Russia: Astrakhan

ncbi_isolation_source: urethal swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences,


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: Australia: WA; Brokton

ncbi_organism_name: Mesorhizobium sp. BR1-1-9

ncbi_submitter: Curtin University


ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: EMG


ncbi_organism_name: Weissella cibaria


ncbi_country: USA: WA

ncbi_organism_name: Leifsonia xyli

ncbi_submitter: University of Washington


ncbi_country: Germany

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio navarrensis

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Mucinivorans sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Georgenia sp. M64

ncbi_submitter: 1. Institute of Deep-sea Science and Engineering, The Chinese Academy of Sciences


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Megasphaera sp.


ncbi_country: USA

ncbi_isolation_source: Rectal Swab

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Cuba: Parque Nacional Topes de Collantes; Sierra del Escambray

ncbi_isolation_source: termite gut

ncbi_organism_name: Holosporaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Cecal Young Chicken

ncbi_organism_name: Campylobacter coli

ncbi_strain_identifiers: CVM N51201F

ncbi_submitter: FDA


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Stenotrophomonas sepilia

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_organism_name: Clostridium tetani

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_country: Japan: Shizuoka

ncbi_organism_name: Pseudomonas syringae pv. aceris

ncbi_strain_identifiers: ICMP 9852

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. aceris


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Limnospira maxima

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland School of Medicine


ncbi_country: USA: Tucson; AZ

ncbi_strain_identifiers: Ua

ncbi_submitter: Yale University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Erwiniaceae;g__Buchnera;s__Buchnera aphidicola;x__Buchnera aphidicola (Uroleucon ambrosiae);x__Buchnera aphidicola str. Ua (Uroleucon ambrosiae)


ncbi_isolation_source: human gut

ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: China: Urumqi

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Xinjiang Medical University School of Basic Medical Sciences


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_organism_name: Bosea sp. BE168

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. BE168


ncbi_organism_name: uncultured Angelakisella sp.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Enterenecus faecium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Eubacteriales;f__;g__Candidatus Enterenecus;s__Candidatus Enterenecus faecium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Enterenecus;s__Candidatus Enterenecus faecium


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: China: Nanjing

ncbi_isolation_source: Laboratory-scale bioreactor

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: NanJing University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: This work was funded by the University Paris-Sud, France. R.A.B., L.D., and T.N. are members of the Laboratory of Excellence in Research on Medication and Innovative Therapeutics (LERMIT), supported by a grant from the French National Research Agency (ANR-10-LABX-33). This work was also supported by the “PHC Utique” program of the French Ministry of Foreign Affairs, the French Ministry of Higher Education, Research and Innovation and the Tunisian Ministry of Higher Education and Scientific Research under the CMCU project number 21G0807.


ncbi_organism_name: uncultured Thalassospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Elizabethkingia anophelis

ncbi_strain_identifiers: WXS

ncbi_submitter: Enze Hospital


ncbi_organism_name: Streptomyces sp. NPDC051822

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Micromonospora sp. NPDC048830


ncbi_submitter: Chulalongkorn University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Shenzhen People's Hospital


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Evtepia sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Evtepia;x__unclassified Evtepia;s__Evtepia sp.


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Scottish Marine Association for Marine Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: McGill University


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: Qingdao Agricultural university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Lysinibacillus capsici

ncbi_submitter: Federal Research Center for Fundamental and Translational Medicine


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Pseudomonas sp. CR1201

ncbi_submitter: Institute of Microbiology,Guangdong Academy of Sciences


ncbi_organism_name: Chryseobacterium sp.

ncbi_submitter: University Bourgogne Franche-Comte, INRAE, Institut Agro Dijon


ncbi_isolation_source: uncut heroin sample

ncbi_organism_name: Shouchella clausii

ncbi_submitter: Bielefeld University


ncbi_country: Switzerland

ncbi_isolation_source: Vaginal swab

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Bern


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-0102

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_submitter: Beijing Institute of Genomics,Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant africanum


ncbi_isolation_source: abortion

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Fribourg


ncbi_assembly_name: GeoThermo1.0 for version 1 of the Geobacillus thermoresilans genome

ncbi_country: India: Mehsana; Gujrat

ncbi_isolation_source: Formation water of oil well

ncbi_organism_name: Geobacillus sp. FW23

ncbi_submitter: Agharkar Research Institute


ncbi_country: India

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Institute for Research In Tuberculosis


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Netherlands: Rotterdam

ncbi_isolation_source: Two-stage PNA wastewater reactor

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: University of Washington


ncbi_country: Afghanistan

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_country: Botswana

ncbi_isolation_source: nasal swab from healthy carrier

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Tennessee


ncbi_country: United Kingdom

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mutans NLML8

ncbi_submitter: Cornell University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho university


ncbi_country: China: Shandong

ncbi_isolation_source: meat

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; >63 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_assembly_name: uncultured LGRT01 Alphaproteobacteria SW01_Bin4

ncbi_isolation_source: seawater

ncbi_submitter: iBB-IST


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Portland State University


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli B40-2

ncbi_submitter: IGS


ncbi_country: Italy

ncbi_isolation_source: cervico-uterine swab

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Istituto Zooprofilattico di Puglia e Basilicata

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_country: Argentina

ncbi_isolation_source: Skin and soft tissue

ncbi_organism_name: Escherichia coli

ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Comamonas thiooxydans

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Nocardiopsis rhodophaea

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Germany: Kiel

ncbi_isolation_source: artificial sea water

ncbi_organism_name: Limimaricola sp. G21655-S1

ncbi_submitter: Heinrich-Heine University Duesseldorf


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Genskey


ncbi_isolation_source: Pooled sediment sample collected from floor of poultry farm

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The REHAB Consortium


ncbi_country: China: Sichuan

ncbi_submitter: China Agricultural University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Streptomyces bacillaris

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Belgium: Comblain-au-Pont

ncbi_isolation_source: cave

ncbi_organism_name: Streptomyces lunaelactis

ncbi_submitter: Center for Protein Engineering


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_country: Canada: Ontario;Toronto

ncbi_isolation_source: Unknown Specimen Type

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Heidelberg University Hospital


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 1 10 to 15cm

ncbi_organism_name: Kangiellaceae bacterium

ncbi_submitter: Northeastern University


ncbi_country: Switzerland

ncbi_isolation_source: porcine rectal swab

ncbi_organism_name: Chlamydia suis

ncbi_submitter: Functional Genomics Genter Zurich


ncbi_country: United Kingdom

ncbi_isolation_source: fecal sample

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: University of Surrey


ncbi_country: Malaysia: Melaka

ncbi_isolation_source: Intestine

ncbi_submitter: University of Malaya


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Staphylococcus cohnii


ncbi_country: USA: California; Middletown

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: South Korea

ncbi_isolation_source: Chicken meat

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_isolate: Honey (polyfloral)

ncbi_organism_name: Apilactobacillus micheneri

ncbi_strain_identifiers: 1H7-7;Honey (polyfloral)

ncbi_submitter: Tokyo University of Agriculture


ncbi_organism_name: Erysipelotrichales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Sleepy Eye; Minnesota

ncbi_isolation_source: field soil

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: China

ncbi_organism_name: Leisingera aquaemixtae

ncbi_submitter: Ocean University of China


ncbi_country: China: The East China Sea

ncbi_isolation_source: surface seawater

ncbi_organism_name: Rhodospirillales bacterium


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Blautia sp.


ncbi_isolation_source: human gut

ncbi_organism_name: [Ruminococcus] lactaris


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_organism_name: Yersinia pestis Antiqua

ncbi_strain_identifiers: Antiqua

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Blue Lagoon; Iceland at 20 cm

ncbi_organism_name: Ruegeria lacuscaerulensis ITI-1157

ncbi_submitter: Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Sulfitobacter sp.

ncbi_submitter: McGill University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_country: USA: NY

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Gansu

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Disease Control and Prevention of Chinese PLA


ncbi_organism_name: Eshraghiella crossota

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus gallolyticus subsp. gallolyticus

ncbi_submitter: Region Zealand


ncbi_organism_name: Leclercia sp. UBA7405

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Listeria innocua

ncbi_submitter: PulseNet USA


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus


ncbi_country: USA

ncbi_isolation_source: sterile tissue

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Karolinska Institutet


ncbi_country: Nigeria

ncbi_isolation_source: fish intestine

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hadar


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Palmer LTER


ncbi_country: Ireland

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_isolation_source: San Francisco sourdough

ncbi_organism_name: Fructilactobacillus sanfranciscensis DSM 20451

ncbi_submitter: Shanghai Majorbio


ncbi_submitter: National Chung Hsing University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae;x__Klebsiella pneumoniae subsp. pneumoniae 1084


ncbi_organism_name: Mesorhizobium sp. M0306

ncbi_submitter: Washington State University


ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Papua New Guinea

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Kocuria nitroreducens

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_organism_name: Cronobacter sp. EKM102R

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Netherlands: Delft; Harnasch polder WWTP

ncbi_isolate: labscale reactor_MAG11

ncbi_isolation_source: aerobic granular sludge sequencing batch reactor fed with glycerol; inoculum derived from raw wastewater

ncbi_organism_name: Acidovorax sp.

ncbi_strain_identifiers: labscale reactor_MAG11

ncbi_submitter: TU Delft


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 1.2 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium RIFOXYB12_FULL_41_12


ncbi_organism_name: Klebsiella sp. JB_Kp031

ncbi_submitter: Max Rubner-Institut


ncbi_country: United Kingdom: Norwich

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Imperial College London


ncbi_isolation_source: compost

ncbi_organism_name: Stenotrophomonas panacihumi

ncbi_submitter: Guangdong Institute of Eco-Environmental and Soil Sciences


ncbi_isolation_source: sugarcane dry straw soil

ncbi_organism_name: Sphingobium yanoikuyae

ncbi_submitter: UNESP-FCAV


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: CSIR- National Environmental Engineering Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium