ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_genome_representation: full

ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: IHU mediterranee infection


ncbi_assembly_level: Contig

ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_assembly_level: Chromosome

ncbi_country: India

ncbi_isolation_source: wound swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Laboratory of Medical Microbiology, University of Antwerpen


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Khon Kaen University


ncbi_country: Netherlands

ncbi_isolation_source: propagated starter culture used in cheese manufacturing

ncbi_submitter: Top Institute Food and Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus lactis;sb__Lactococcus lactis subsp. lactis;x__Lactococcus lactis subsp. lactis bv. diacetylactis;x__Lactococcus lactis subsp. lactis bv. diacetylactis str. TIFN2


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV065

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


gtdb_representative: t

ncbi_assembly_level: Scaffold

ncbi_isolation_source: human gut

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: EMG


ncbi_country: Spain: Canizal; Zamora

ncbi_isolation_source: nodules

ncbi_organism_name: Micromonospora noduli

ncbi_submitter: Universidad de Salamanca

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: China Agricultural University


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Hunan Province

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Shandong Agricultural University


ncbi_country: USA

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_assembly_name: Draft genome of Cobetia crustatorum JO1

ncbi_country: Korea: Daejeon

ncbi_isolation_source: fermented shrimp

ncbi_organism_name: Cobetia crustatorum

ncbi_submitter: Kyung Hee University


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: France: Limoges

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universite Paris Sud


ncbi_country: USA: San Diego Bay; CA

ncbi_isolation_source: swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Aalborgiella aggregata

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Zhejiang University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides faecis

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Parerythrobacter sp.

ncbi_submitter: The University of Melbourne


ncbi_country: United Kingdom

ncbi_isolation_source: Bulk milk

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Ares Genetics


ncbi_country: Thailand


ncbi_organism_name: Megasphaera sp.


ncbi_isolation_source: blood

ncbi_submitter: Duke University


ncbi_organism_name: Cronobacter turicensis

ncbi_refseq_category: reference genome

ncbi_submitter: Centers for Disease Control and Prevention Enteric Diseases Laboratory Branch


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Run Run Shaw Hospital,School of Medicine,Zhejiang University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: France

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Caecum

ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 118

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 1363

ncbi_submitter: University of Calgary


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_country: Israel

ncbi_isolation_source: solar lake

ncbi_organism_name: Dactylococcopsis salina PCC 8305

ncbi_submitter: JGI


ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: USA: Florida

ncbi_isolation_source: leaf from transplant house

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Leptospira venezuelensis

ncbi_submitter: Venezuelan Scientific Research Institute


ncbi_country: Brazil

ncbi_isolation_source: nodules

ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_strain_identifiers: CPAC 394

ncbi_submitter: Embrapa Soja


ncbi_country: India: Ladakh

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Veterinary Medicine University of Vienna


ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_organism_name: Pseudomonas juntendi

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Saint-Louis Hospital


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_organism_name: Streptomyces termitum

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Turkey: Mersin

ncbi_isolation_source: Greenhouse

ncbi_organism_name: Pseudomonas veronii

ncbi_submitter: University of Toronto Mississauga


ncbi_organism_name: Bacillus mobilis

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Giesbergeria sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Sichuan

ncbi_isolation_source: yak milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolate: Clostridium neonatale JD68

ncbi_organism_name: Clostridium neonatale

ncbi_strain_identifiers: Clostridium neonatale JD68

ncbi_submitter: universite paris cite


ncbi_isolation_source: Mice cecum

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: University of Michigan


ncbi_country: Denmark: Kgs. Lyngby; Technical University of Denmark

ncbi_isolation_source: granules from a lab-scale partial nitritation/anammox bioreactor

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: South Korea

ncbi_organism_name: Proteus terrae subsp. cibarius

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_country: Austria: Vienna

ncbi_organism_name: Brucella sp. 2716

ncbi_submitter: Institute of Microbiology


ncbi_country: Comoros

ncbi_submitter: University of Bath


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Brachyspira pulli

ncbi_submitter: Animal and Plant Health Agency


ncbi_country: USA: Cornell campus; Ithaca; New York

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Ideonella azotifigens

ncbi_submitter: Washington State University


ncbi_isolation_source: Chicken Breast

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Zurich


ncbi_organism_name: Bdellovibrio sp.

ncbi_submitter: EPFL


ncbi_country: USA: Tifton County; Georgia

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Chlamydia psittaci 01DC11

ncbi_submitter: Leibniz Institute for Natural Product Research and Infection Biology


ncbi_organism_name: Bacillus anthracis str. A16R

ncbi_submitter: Beijing Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus anthracis;x__Bacillus anthracis str. A16R


ncbi_assembly_name: Salmonella enterica CVM N29338-SQ v1.0

ncbi_country: USA: MN

ncbi_isolation_source: Ground Turkey

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: FDA


ncbi_assembly_name: Rumen uncultured genome RUG10820

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Germany: Helgoland Roads

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Winogradskyella forsetii

ncbi_submitter: Mediterranean Institute For Advanced Studies


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: University of Chicago


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus gallolyticus subsp. gallolyticus

ncbi_submitter: Region Zealand


ncbi_organism_name: Methylotenera sp.


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Amylibacter sp.

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: China: Guangdong

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_organism_name: Alistipes shahii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_country: Norway

ncbi_isolation_source: Human

ncbi_organism_name: Brucella melitensis

ncbi_submitter: NORWEGIAN INSTITUTE OF PUBLIC HEALTH


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: University Hospital of Dusseldorf


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_submitter: Genomik Solidaritas Indonesia


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: Roseburia faecis

ncbi_submitter: National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Kenya: Nyanza Province

ncbi_submitter: University of Maryland School of Medicine


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Mexico


ncbi_country: Chile: Santiago

ncbi_isolation_source: spuyum

ncbi_submitter: Universidad del desarrollo


ncbi_country: USA: Plum Island; MA

ncbi_isolation_source: Filtered seawater (5uM filter)

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Bifidobacteriaceae bacterium MCC01970

ncbi_submitter: Moringa milk industry co., ltd.


ncbi_country: China: Hubei

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Shenzhen People's Hospital


ncbi_isolation_source: Blood

ncbi_submitter: Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_isolation_source: enrironmental

ncbi_organism_name: Vibrio owensii

ncbi_submitter: Technology Center of Zhanjiang Customs District P.R.China


ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycolicibacterium;s__Mycolicibacterium vaccae;x__Mycolicibacterium vaccae NBRC 14118 = CIP 105934


ncbi_country: Singapore

ncbi_isolation_source: not known

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni


gtdb_type_species_of_genus: t

ncbi_organism_name: Fidelibacter multiformis

ncbi_submitter: Geomicrobiology Research Group, Institute for Geo-Resources and Environment, National Institute of Advanced Industrial Science and Technology


ncbi_country: Nigeria: Awgbu

ncbi_isolation_source: sold in market

ncbi_organism_name: Metapseudomonas resinovorans

ncbi_strain_identifiers: Awg 2

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna


ncbi_country: USA: Saint Louis; MO

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Alkalihalobacillus;s__Alkalihalobacillus alcalophilus;x__Alkalihalobacillus alcalophilus ATCC 27647 = CGMCC 1.3604


ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: USA: Boston; MA

ncbi_isolation_source: Supragingival dental plaque; molar tooth

ncbi_organism_name: Capnocytophaga sp. oral taxon 323

ncbi_submitter: The Forsyth Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;x__unclassified Capnocytophaga;s__Capnocytophaga sp. oral taxon 323


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: environmental sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Alliance de Recherche sur les Maladies Infectieuses Nantes-Angers (ARMINA)


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Leifsonia sp. A12D58

ncbi_submitter: Ondokuz Mayis University


ncbi_organism_name: Polyangiales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Campylobacter coli

ncbi_submitter: dtu national food institute


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Zurich


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: PARUL UNIVERSITY


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: University of Cadiz


ncbi_organism_name: Bacillus pacificus

ncbi_strain_identifiers: TIAC 2747

ncbi_submitter: Ghent University


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Salmonella sp. SJTUF15599

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Morganella morganii

ncbi_submitter: NSU Genome Research Institute (NGRI)


ncbi_organism_name: Pseudoalteromonas sp. MTN2-4

ncbi_submitter: The University of Tokyo, Atmosphere and Ocean Research Institute


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Pacearchaeota archaeon

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Archaea;x__Nanobdellati;x__Candidatus Pacearchaeota;x__unclassified Candidatus Pacearchaeota;s__Candidatus Pacearchaeota archaeon


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_submitter: EMG


ncbi_organism_name: Limnochordia bacterium


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Tokyo Medical and Dental University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Brazil: Dourados

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Clostridia bacterium


ncbi_country: South Korea: Seoul

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_country: Switzerland

ncbi_isolation_source: Rectal swab

ncbi_submitter: University of Bern


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: China: Guangzhou

ncbi_isolation_source: environmental swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: GUANGZHOU CDC,China


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium UBA4716

ncbi_submitter: University of Queensland


ncbi_isolation_source: cold seep

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: urogenital tract; vaginal

ncbi_organism_name: Mobiluncus curtisii ATCC 51333

ncbi_submitter: Baylor College of Medicine


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_submitter: National Medicines Institute


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Blautia hansenii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Aquimarina sp. AD1

ncbi_submitter: University of New South Wales


ncbi_country: Canada: Lake Hazen

ncbi_isolation_source: sediment

ncbi_organism_name: Geobacter sp.

ncbi_submitter: University of Ottawa


ncbi_country: Russia

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Germany

ncbi_organism_name: Borreliella bavariensis

ncbi_strain_identifiers: PRof

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Acidovorax sp. 39-64-12


ncbi_country: Brazil

ncbi_isolation_source: Diarrheal feces

ncbi_organism_name: Yersinia frederiksenii

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: Rumen uncultured genome RUG12074

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: China: Jiangxi; Dexing

ncbi_organism_name: Metallibacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Eshraghiella crossota

ncbi_submitter: EMG


ncbi_country: Canada: Toronto

ncbi_isolation_source: Processing enviroment

ncbi_submitter: Public Health Agency of Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes;x__Listeria monocytogenes serotype 1/2a;x__Listeria monocytogenes serotype 1/2a str. 08-7362


ncbi_country: India: Pune

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Hyderabad


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China: Jiangxi; Yongping

ncbi_organism_name: Acidobacteriaceae bacterium


ncbi_country: USA: Utah

ncbi_isolation_source: blood stream

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Intermountain Healthcare


ncbi_country: Tunisia: Agareb

ncbi_isolation_source: roots

ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: University of Neuchatel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_isolation_source: BALF

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: GensKey Gene Technology Co. Ltd.


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: France

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: CHU de Bicetre


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pretoria


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater influent sample

ncbi_submitter: The REHAB Consortium


ncbi_country: Bangladesh

ncbi_isolation_source: puppy

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Bangladesh Livestock Research Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Colombia

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_assembly_name: UPH_Bifidobacterium breve_BS2-PS2

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Universitas Pelita Harapan, Faculty of Science and Technology


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: University of Oxford


ncbi_country: USA: NY

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus DAR1157

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas sp. RC10-4-2

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_country: China: Shanghai

ncbi_submitter: Gansu Provincial People's Hospital


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Stenotrophomonas muris

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Antarctica: James Ross Island

ncbi_isolation_source: water; temporary lake on ridge The Naze

ncbi_organism_name: Massilia scottii

ncbi_submitter: Masaryk University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: Mariane macroalgea Saccharina sp.

ncbi_organism_name: uncultured Hellea sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Streptomyces bacillaris

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Kauai

ncbi_organism_name: Xanthomonas phaseoli pv. dieffenbachiae

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: Aminipila sp.


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Adlercreutzia equolifaciens

ncbi_submitter: EMG


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Iran: Salmas

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Pseudomonas azerbaijanoccidentalis

ncbi_submitter: KU Leuven


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Thailand: Khon Kaen

ncbi_isolation_source: food

ncbi_organism_name: Vibrio metschnikovii

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_country: Japan

ncbi_isolation_source: feces; 4 single-cells amplified by MDA combined with human gut metagenome reads

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: bioBiome, Inc.


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: honey

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: National Agriculture and Food Research Organization


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Blautia sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Pseudomonas sp. RP23018S

ncbi_submitter: Karadeniz Technical University


ncbi_organism_name: Enterobacter mori

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Salinivirga sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Italy: Nulvi

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Monash University


ncbi_country: India: Chandigarh; PGIMER

ncbi_isolation_source: Duodenal mucosa of Celiac disease patient

ncbi_organism_name: Janibacter melonis

ncbi_submitter: Institute of Microbial Technology


ncbi_country: China

ncbi_isolation_source: gut microbiota

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Shenzhen Puensum Genetech Institute


ncbi_organism_name: Companilactobacillus sp. HBUAS56257

ncbi_submitter: Hubei University of Arts and Science


ncbi_organism_name: Nocardioides sp. C4-1

ncbi_submitter: Dongguk University


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;x__Hyphomicrobiales incertae sedis;g__Candidatus Endowatersipora;x__unclassified Candidatus Endowatersipora;s__Candidatus Endowatersipora endosymbiont of Watersipora subatra


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_assembly_name: Rumen uncultured genome RUG14633

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Kenya: Lwak

ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Univ. of Maryland


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of British Columbia


ncbi_country: Peru

ncbi_organism_name: Shigella sonnei


ncbi_organism_name: Sediminibacterium sp.


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: Russia: Moscow

ncbi_isolation_source: sputum

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_country: Canada

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Western University


ncbi_country: China: Nei Monggol Autonomous Region

ncbi_isolation_source: Badain Jaran desert sand

ncbi_organism_name: Cellulomonas telluris

ncbi_submitter: Institute of Medicinal Biotechnology


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDK8D60P

ncbi_submitter: South China Agricultural University


ncbi_country: Canada: Manitoba;Winnipeg

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWA2_38_27


ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Alicycliphilus sp. UBA3448

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: SC


ncbi_country: South Africa: Durban

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of KwaZulu Natal

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IMR


ncbi_isolation_source: faecal

ncbi_organism_name: Enterobacter ludwigii


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1420

ncbi_submitter: Broad Institute


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: Rectal Swab

ncbi_submitter: Institute for medical research


ncbi_isolation_source: human gut

ncbi_organism_name: Veillonellaceae bacterium

ncbi_submitter: EMG


ncbi_submitter: Department of Microbiology, Faculty of Science, Gombe State University, Tudun Wada, Gombe, Gombe Sta


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile CD200

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Sweden: Gothenborg

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_organism_name: Streptomyces sp. NPDC049744

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp. NBC_00269

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_organism_name: bacterium

ncbi_submitter: Linnaeus University


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: USA: Tennessee

ncbi_isolation_source: sediment

ncbi_organism_name: Caulobacter vibrioides OR37

ncbi_submitter: Oak Ridge National Lab


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: University of Chicago


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Escherichia coli

ncbi_submitter: SRCAMB


ncbi_country: China: Qingdao

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Shandong University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Nitrospina sp.

ncbi_submitter: EMG


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tagaibacteriota;s__Candidatus Tagabacteria bacterium CG_4_10_14_0_2_um_filter_40_13


ncbi_country: Australia: NT

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_organism_name: Gallionella sp.

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Oceanobacillus manasiensis

ncbi_submitter: URMITE


ncbi_country: China: Guangzhou

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. TH230-1LC

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. TH230-1LC


ncbi_country: USA: Ohio

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: The Ohio State University


ncbi_organism_name: Campylobacteraceae bacterium


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Colorado

ncbi_isolation_source: Dialysis Catheter Insertion Site

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Wild Bird

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zoonosis Science Center


ncbi_submitter: Central Research Institute of Epidemiology


ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Hangzhou

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_country: Nigeria

ncbi_isolation_source: stool

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Cepheid


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: WA

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: University of Washington


ncbi_organism_name: Phaeobacter sp.

ncbi_submitter: Xiamen University


ncbi_isolation_source: marine

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Exiguobacterium sp. UBA4141

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. UBA4141


ncbi_strain_identifiers: wcaJ-IS

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Citrobacter cronae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: cecum

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: Quadram Institutte


ncbi_country: Brazil: Mato Grosso do Sul

ncbi_isolation_source: urine

ncbi_organism_name: Leptospira kirschneri serovar Pomona

ncbi_submitter: School of Veterinary Medicine and Animal Science / University of Sao Paulo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: South Korea: llsan

ncbi_isolation_source: mudflat

ncbi_organism_name: Erythrobacter fulvus

ncbi_submitter: Dongguk University


ncbi_assembly_name: IMG-taxon 2642422585 annotated assembly

ncbi_organism_name: Halanaerobium congolense

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Norway: Bergen

ncbi_isolation_source: Sewage

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Marine Research


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Bacteroidales bacterium UBA4850

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA4850


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Equipe PHySE - HydroSciences Montpellier


ncbi_country: India

ncbi_isolation_source: frozen vacuum packaged yellowfin tuna scrape

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN001109


ncbi_country: Hong Kong: Pokfulam

ncbi_isolation_source: Storm drain water

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Denmark

ncbi_organism_name: Arcanobacterium phocae

ncbi_submitter: Helsinki University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Inhella sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Shandong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: Pig 77

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Puyang Oil Field General Hospital


ncbi_organism_name: uncultured Sangeribacter sp.


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Leucobacter sp.


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Salmonella sp. SKLX063758

ncbi_submitter: Zhejiang university


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Universidad de Leon


ncbi_isolate: S. mitis B22

ncbi_organism_name: Streptococcus mitis

ncbi_strain_identifiers: S. mitis B22

ncbi_submitter: ITQB NOVA


ncbi_organism_name: uncultured Acidobacterium sp.


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: Chesapeake Bay

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Clemson University


ncbi_isolation_source: mesocosm experiment

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: biogas fermenter

ncbi_organism_name: Firmicutes bacterium UBA2557

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA2557


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Nitrospinaceae bacterium

ncbi_submitter: Princeton University


ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Salmonella sp. 741265069_HSA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_country: China: Jiangxi; Yinshan

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Canada: Powell Lake South basin; British Columbia

ncbi_isolation_source: lake water

ncbi_submitter: Dalhousie University


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: DOE JGI


ncbi_submitter: University of South Africa


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: metal

ncbi_organism_name: Leclercia sp. UBA4406


ncbi_organism_name: Terriglobia bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptomyces flaveolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Microcoleus sp. AT3-D2

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of California Davis


ncbi_country: Germany: Sylt

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Citellus undulatus

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Lentimicrobium sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Malt vinegar brewery acetifiers

ncbi_organism_name: Novacetimonas maltaceti

ncbi_submitter: Georg-August-University Goettingen


ncbi_country: USA: California; Lower Lake

ncbi_isolation_source: groundwater

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Nocardia tengchongensis


ncbi_country: China: Qiqihar

ncbi_isolation_source: soil

ncbi_organism_name: Erwinia sp. E602

ncbi_submitter: Jiangnan University


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Laboratory for Foodborne Zoonoses


ncbi_country: United Kingdom: Loughborough

ncbi_isolation_source: feces; 5-month-old; persistent scour (diarrhoea)

ncbi_organism_name: Aliarcobacter skirrowii CCUG 10374

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: Patient

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: ROSLIN


ncbi_country: Austria: Vienna

ncbi_isolation_source: blood

ncbi_organism_name: Brucella melitensis

ncbi_submitter: AGES


ncbi_country: Egypt: Assuit; Dayrout

ncbi_isolation_source: root nodules

ncbi_organism_name: Klebsiella variicola

ncbi_strain_identifiers: FR 87

ncbi_submitter: msa univeristy


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Erba brine-seawater interface

ncbi_organism_name: Microbulbifer sp. ZGT114

ncbi_submitter: Red Sea Research Center, Saudi Arabia


ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: Washington University in St. Louis


ncbi_country: United Kingdom

ncbi_isolation_source: Lung

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- I-3_bin-103

ncbi_isolation_source: pond

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Jersey

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bath


ncbi_country: Denmark: Lyngby

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: DTU Biosustain


ncbi_submitter: National Institute of Animal Health


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: ECBC


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: France: Institute of Bacteriology of Strasbourg

ncbi_isolation_source: semen

ncbi_organism_name: Corynebacterium singulare

ncbi_submitter: Bielefeld University


ncbi_assembly_name: IMG-taxon 2609459710 annotated assembly

ncbi_organism_name: Pseudomonas sp. ok272

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_submitter: Yale University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. LT2;x__Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S


ncbi_country: USA: Georgia

ncbi_isolation_source: Lake Lanier

ncbi_organism_name: Gallionellales bacterium UBA7399

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_country: China: Shenzhen

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: BGI


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacier surface soil

ncbi_organism_name: Luteimonas sp.

ncbi_submitter: Aarhus University


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Balneolales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_submitter: Nanyang Technological University


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Kenya: Kisumu

ncbi_submitter: USAMRD-A


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Kolab Inc


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Faecalicoccus acidiformans

ncbi_submitter: Veterinary Research Institute


ncbi_country: Germany: Kiel

ncbi_isolation_source: artificial sea water

ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: Heinrich-Heine University Duesseldorf


ncbi_strain_identifiers: Sri Lanka 30

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Pyrogenes;x__Leptospira interrogans serovar Pyrogenes str. Sri Lanka 30


ncbi_organism_name: Staphylococcus singaporensis

ncbi_submitter: National University Hospital


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lejia lagoon

ncbi_isolation_source: soil alkaline flat

ncbi_organism_name: Halomonas sp.

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: cheese

ncbi_organism_name: Vibrio casei

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University


ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: University of Exeter


ncbi_country: China: Shandong

ncbi_isolation_source: environment

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_organism_name: Cellulosimicrobium cellulans


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Watsonalla binaria


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: India: Maharashtra; Pune

ncbi_isolation_source: commercial food preparation

ncbi_organism_name: Heyndrickxia coagulans

ncbi_submitter: Agharkar Research Institute


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: Baltic Sea

ncbi_isolation_source: surface water; brackish water collected from the surface of the Baltic Sea

ncbi_organism_name: Acidimicrobium sp. BACL17 MAG-120823-bin42

ncbi_submitter: Kungliga Tekniska Hogskolan


ncbi_organism_name: Streptococcus pyogenes serotype M18

ncbi_submitter: IZLSLER


ncbi_organism_name: Stutzerimonas frequens

ncbi_submitter: Consortium for the Investigation of Gulf of Mexico (CIGOM)


ncbi_organism_name: Capnocytophaga canimorsus

ncbi_submitter: Aarhus University Hospital


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bulleidia sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Florida

ncbi_isolation_source: gut

ncbi_organism_name: Ochrobactrum soli

ncbi_submitter: University of Florida


ncbi_country: USA: California

ncbi_isolation_source: Phaseolus vulgaris

ncbi_organism_name: Xanthomonas sp. MLO165

ncbi_submitter: University of California, Davis


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Wilmar International Limited


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Dialister invisus

ncbi_submitter: EMG


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 14 after weanning

ncbi_organism_name: bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: chicken coop

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Boston College


ncbi_country: South Africa

ncbi_isolation_source: water

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zoonosis Science Center


ncbi_country: USA: IA

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Helicobacter japonicus


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Candidatus Pseudothioglobus sp.

ncbi_submitter: Tang lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Pseudothioglobus;x__unclassified Candidatus Pseudothioglobus;s__Candidatus Pseudothioglobus sp.


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Senegalimassilia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_organism_name: Denitrovibrio acetiphilus DSM 12809

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Spain: Cantabria; Altamira Cave

ncbi_isolation_source: white colonies from cave wall

ncbi_organism_name: Crossiella sp. S99.1

ncbi_submitter: Instituto de Recursos Naturales y Agrobiologia


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: South Korea

ncbi_isolate: missinsg

ncbi_isolation_source: Asian pear tree

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_isolation_source: intermediate urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho University


ncbi_country: Russia

ncbi_isolation_source: sulfur spring

ncbi_organism_name: Blastochloris sulfoviridis

ncbi_strain_identifiers: DSM 729

ncbi_submitter: Bellevue University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- LinL3_bin-0109

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA/ARS/WRRC/PSM


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_assembly_name: IMG-taxon 2595698247 annotated assembly

ncbi_organism_name: Chitinophaga ginsengisegetis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus cremoris;sb__Lactococcus cremoris subsp. cremoris;x__Lactococcus cremoris subsp. cremoris NBRC 100676


ncbi_country: United Kingdom: Isle of May

ncbi_isolation_source: Halichoerus grypus

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Edinburgh


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: microbes were collected at JL-Dive100-S03

ncbi_organism_name: Geopsychrobacter sp.

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences


ncbi_isolation_source: hydrocarbon

ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroides ovatus


ncbi_country: USA: California; Lower Lake

ncbi_isolation_source: groundwater

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: CSF


ncbi_isolation_source: Human

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Sandia National Laboratories


ncbi_assembly_name: Strain 19

ncbi_submitter: University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas fragariae (ex Marin et al. 2024)


ncbi_organism_name: Brevundimonas basaltis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Coprobacillus cateniformis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Australia: Bundaberg

ncbi_isolation_source: plant tissue

ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: La Trobe University


ncbi_organism_name: Streptomyces glebosus


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: candidate division FCPU426 bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division FCPU426;s__candidate division FCPU426 bacterium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_isolation_source: Faeces


ncbi_organism_name: Sediminicola sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Parasutterella sp.


ncbi_country: Brazil: Brasilia

ncbi_isolation_source: cell culture

ncbi_organism_name: Bacillus spizizenii

ncbi_submitter: Embrapa Genetic Resources and Biotechnology


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: urine

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Bombylius major


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Thompson


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Steroidobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking university people's hospital


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_country: South Africa: Ethekwini district; KwaZulu-Natal

ncbi_isolation_source: Peadiatric - phone

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: uncultured Actinomyces sp.


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Nitrospina sp.


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: Clemson University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Canada

ncbi_isolation_source: Cecal

ncbi_submitter: University of Guelph


ncbi_country: USA: VA

ncbi_organism_name: Salmonella enterica

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus VPCR-2009

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus VPCR-2009


ncbi_country: Australia: Australian Institute of Marine Science

ncbi_isolation_source: seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Candidatus Phytoplasma citri

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma citri


ncbi_country: China: Sichuan Province; Chengdu City

ncbi_isolation_source: solid waste treatment site

ncbi_organism_name: Ectopseudomonas chengduensis

ncbi_strain_identifiers: MBR

ncbi_submitter: Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory


ncbi_country: France: Paris

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: Russia: Altai Republic; Pervomayskiy district; Pokrovka village

ncbi_organism_name: Francisella tularensis subsp. mediasiatica

ncbi_submitter: SRCAMB


ncbi_country: USA

ncbi_isolation_source: tissue

ncbi_organism_name: Bacteroides ovatus str. 3725 D9 iii

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides ovatus;x__Bacteroides ovatus str. 3725 D9 iii


ncbi_country: China: East China Sea

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WRAIR-Africa


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Portugal

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Austria

ncbi_isolation_source: throat

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: AGES


ncbi_country: Colombia

ncbi_isolation_source: Excreted bodily substance

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_country: France: Brest

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Marinilabiliales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Marinilabiliales;x__environmental samples;s__uncultured Marinilabiliales bacterium


ncbi_isolation_source: Stool

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: URMITE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides salyersiae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Faecalimonas umbilicata

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: France: Nimes

ncbi_isolation_source: sputum from cystic fibrosis patient

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Montpellier Service de Microbiologie et Hygiene Hospitaliere CHU Nimes


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Alloprevotella sp.


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Lactobacillus acetotolerans

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Halanaerobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Pacific Northwest

ncbi_isolation_source: blood from patient with bacteremia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_organism_name: Oceanospirillaceae bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: stool


ncbi_country: USA: Chicago

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Cronobacter sakazakii

ncbi_strain_identifiers: S41 PIFM

ncbi_submitter: University of Dhaka


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Nonomuraea sp. NPDC059194

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Drexel


ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Streptomyces chartreusis


ncbi_submitter: Washington University in St Louis


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Streptomyces sp. NPDC055929


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Avelusimicrobium sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Paenibacillus illinoisensis

ncbi_submitter: Lab of Bio-molecular and Gene technology Institute of Biotechnology and Environment, Tay Nguyen University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Bartonella sp. CL162QHHD

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Microcoleus sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Streptomyces sp. NPDC056696


ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_organism_name: Streptomyces sp. NPDC014801


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: Recep Tayyip Erdogan University


ncbi_submitter: EMG


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Porphyromonas endodontalis

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: China: Hong Kong

ncbi_isolation_source: anammox reactor

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Vreelandella alkaliphila

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Endozoicomonas sp. ALB122

ncbi_submitter: University of Melbourne


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Leuconostoc suionicum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: Salmonella sp. C3332

ncbi_submitter: Sichuan University


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: pig gut metagenome


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: open ocean water sample collected over the continental slope off the West Coast of Africa between the Cape Verde and Canary Islands

ncbi_organism_name: Vibrio campbellii DS40M4

ncbi_submitter: Universidade Federal Do Rio De Janeiro

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio campbellii;x__Vibrio campbellii DS40M4


ncbi_country: India: Tamil Nadu

ncbi_submitter: SAHMRI


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Helicobacter ganmani

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG13984

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_country: France

ncbi_isolation_source: dairy product

ncbi_submitter: Anses


ncbi_organism_name: uncultured Candidatus Finniella sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Holosporales;f__Candidatus Paracaedibacteraceae;g__Candidatus Finniella;x__environmental samples;s__uncultured Candidatus Finniella sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp. TF11-13AC

ncbi_submitter: BGI


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_isolate: host faecal sample

ncbi_strain_identifiers: YE212;host faecal sample;02

ncbi_submitter: WTSI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;s__Yersinia enterocolitica;x__Yersinia enterocolitica (type O:9);x__Yersinia enterocolitica (type O:9) str. YE212/02


ncbi_isolation_source: Seal skin legion

ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: Laboratory of Aquatic Medicine School of Veterinary Medicine, Nippon Veterinary and Life Science University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Mali

ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis 69096

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Netherlands

ncbi_isolation_source: Nose

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: Drexel University College of Medicine


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: bacterial culture

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center of Infectious and Parasitic Diseases, Sofia Bulgaria


ncbi_country: Switzerland: Winterthur

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Denmark: Avedore

ncbi_isolation_source: activated sludge from Aved_18-Q3-R54-62

ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: Germany

ncbi_isolation_source: NPS

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: Karolinska Institutet


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Carnobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Denmark: Aarhus

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Aarhus University


ncbi_country: Russia: Bykovsky Peninsula;Polar Fox Lagoon

ncbi_isolation_source: Polar Fox Lagoon sediment taken using 3m corer (60 mm diameter)

ncbi_organism_name: Maribacter sp.

ncbi_submitter: Radboud University Nijmegen


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Austria: Vienna

ncbi_isolation_source: 10 mM sulfoquinovose-amended vegetarian human fecal microcosm

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Vienna


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Blautia sp.


ncbi_country: China: Zhejiang

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_country: Japan: Kobe

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Kobe Institute of Health

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Streptomyces europaeiscabiei

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2671180072 annotated assembly

ncbi_organism_name: Nitrosomonas eutropha

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Canada: Atlantic

ncbi_isolation_source: Herd 407

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 1318

ncbi_submitter: University of Calgary


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: BGI


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Caecum

ncbi_organism_name: Dubosiella newyorkensis


ncbi_country: Australia

ncbi_isolation_source: beef

ncbi_organism_name: Escherichia coli

ncbi_submitter: Shanghai Customs


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Rikenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Tenacibaculum sp. 1B UA

ncbi_strain_identifiers: 1B UA

ncbi_submitter: University of Balearic Islands

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum;x__unclassified Tenacibaculum;s__Tenacibaculum sp. 1B UA


ncbi_country: United Kingdom

ncbi_isolation_source: Chicken

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Ireland

ncbi_isolation_source: skim milk powder (medium heat)

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Teagasc Agriculture and Food Development Authority


ncbi_organism_name: Priestia koreensis

ncbi_submitter: Ghent University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Singapore: Jurong East

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_organism_name: Neglectibacter caecimuris

ncbi_submitter: shandong university


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: Rumen uncultured genome RUG12896

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Copenhagen


ncbi_country: China

ncbi_organism_name: Microbacterium suaedae

ncbi_strain_identifiers: YZGP 509

ncbi_submitter: Xinjiang Normal University


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Blattabacterium cuenoti

ncbi_strain_identifiers: BGW

ncbi_submitter: The University of Adelaide


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: British Columbia;Abbotsford

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: Biology Centre CAS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University College London (UCL)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EBI


ncbi_organism_name: Campylobacter coli

ncbi_submitter: university of burgos


ncbi_organism_name: Ruminococcus gauvreauii

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_assembly_name: freshwater MAG --- Day6-5_bin-608

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hainan

ncbi_isolation_source: mangrove sediments

ncbi_organism_name: Pontibacillus chungwhensis

ncbi_submitter: Shantou university


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus


ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Umbilo


ncbi_assembly_name: Rumen uncultured genome RUG11387

ncbi_organism_name: Fibrobacter succinogenes

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Candidatus Limiplasma merdipullorum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;s__Candidatus Limiplasma merdipullorum


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured Hyphomicrobiales bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus sp. HMSC078E03

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: Region Zealand


ncbi_country: China: Sichuan

ncbi_isolation_source: Sichuan; China

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Reunion

ncbi_isolation_source: Rectal

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_organism_name: Serratia nevei

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_assembly_name: mthmo

ncbi_organism_name: Methylacidimicrobium sp. AP8

ncbi_submitter: RADBOUD UNIVERSITY NIJMEGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__Verrucomicrobiota incertae sedis;g__Methylacidimicrobium;x__unclassified Methylacidimicrobium;s__Methylacidimicrobium sp. AP8


ncbi_country: Brazil

ncbi_isolation_source: rhizosphere soil from sugare cane field

ncbi_organism_name: Pseudomonas sp. R25(2017)

ncbi_submitter: University of Sao Paulo


ncbi_country: China: Taiyuan

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Steroidobacter sp.

ncbi_submitter: CAU


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Chryseobacterium sp. Y3

ncbi_submitter: Guangxi Minzu University


ncbi_organism_name: Sulfuriferula sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Spain

ncbi_isolation_source: Marine microalgae culture; Puerto Real; Cadiz

ncbi_organism_name: Roseibium aggregatum

ncbi_strain_identifiers: CECT 4801

ncbi_submitter: UVEG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospira sp.


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Microcoleus sp. A006_D1

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Shenzhen people's hospital


ncbi_country: China: Weifang

ncbi_isolation_source: chicken dung channel

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University College London (UCL)


ncbi_country: Sweden: Stockholm

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_organism_name: Kitasatospora terrestris

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Spain: Cadiz

ncbi_isolation_source: Urine

ncbi_submitter: Hospital Universitario Puerta del Mar


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp. OM04-7

ncbi_submitter: BGI


ncbi_isolation_source: laboratory

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Chr. Hansen


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 278

ncbi_submitter: SC


ncbi_country: Russia


ncbi_country: India

ncbi_isolation_source: stool

ncbi_submitter: Christian Medical College