ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Priestia aryabhattai

ncbi_strain_identifiers: KSC 351

ncbi_submitter: Jet Propulsion Laboratory


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University School of Medicine


gtdb_representative: f

ncbi_assembly_name: freshwater MAG --- MJ130702A_bin-086

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Nitrosomonadales bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_assembly_level: Scaffold

ncbi_country: USA: Boston; MA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus M0078

ncbi_submitter: Broad Institute


ncbi_organism_name: Streptomyces sp.

ncbi_submitter: Colorado State University


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Sulfobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;x__unclassified Sulfobacillus;s__Sulfobacillus sp.


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: uncultured bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Brucella abortus 863/67


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD20344


ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_organism_name: Staphylococcus aureus HI049C


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NPDC047014

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Shigella sonnei

ncbi_submitter: JCVI


ncbi_assembly_level: Complete Genome

ncbi_country: Sudan

ncbi_strain_identifiers: CFBP 2526

ncbi_submitter: IRHS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. glycines;x__Xanthomonas citri pv. glycines CFBP 2526


ncbi_isolation_source: Portion of Sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: Liverpool Epidemic Strain

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_country: USA: Pennsylvania; Centralia

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Michigan State University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Parvularcula marina

ncbi_submitter: Tang lab


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_submitter: Agroscope


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Pakistan

ncbi_isolation_source: body fluid

ncbi_submitter: FDA


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Leclercia sp.


ncbi_organism_name: Microcoleus sp. F6_B4

ncbi_submitter: Palacky University Olomouc


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Escherichia coli TW09195

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Germany: Hesse; Gross-Gerau

ncbi_isolation_source: kitchen drain gutter floor

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Justus-Liebig-University Giessen


ncbi_organism_name: Morganella morganii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: [Eubacterium] sulci

ncbi_submitter: J. Craig Venter Institute


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: red chili powder

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000203


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: Universidade de Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: China: Guangdong; Daobaoshan

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: South African mango

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Xingjiang

ncbi_isolation_source: saline soil samples

ncbi_organism_name: Nocardiopsis gilva YIM 90087

ncbi_refseq_category: reference genome

ncbi_submitter: school of medicine

ncbi_type_material_designation: assembly from type material


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Limnospira platensis

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: Lembah Pantai River

ncbi_organism_name: Staphylococcus sp. S75

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Netherlands

ncbi_isolation_source: pork

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 778g

ncbi_submitter: Shanghai Customs


ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: surface swab

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence

ncbi_organism_name: Nitrosospira multiformis

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_organism_name: Leptotrichia wadei

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Spribille Lab


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater outflow

ncbi_submitter: BIOTEC


ncbi_country: Morocco: Rabat-Sale-Zemmour-Zaer; Khemisset Province

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Chapel Hill; NC

ncbi_isolation_source: Clinical patient

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Pittsburgh Bacteriophage Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter japonicus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University


ncbi_country: USA: inshore coral nursery; Key West; FL

ncbi_isolation_source: surface mucus layer

ncbi_organism_name: Vibrio coralliilyticus

ncbi_submitter: University of Florida


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Thalassotalea sp. 1_MG-2023

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Gammaproteobacteria bacterium UBA3204

ncbi_submitter: University of Queensland


ncbi_country: USA: Richmond; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: bacterium

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: feces

ncbi_organism_name: Shigella sp. FC6539

ncbi_submitter: Ministry of Science and Technology of China


ncbi_isolation_source: hexazinone degrading bioreactors

ncbi_organism_name: Pseudomonas kuykendallii

ncbi_submitter: University of Balearic Islands


ncbi_organism_name: Abyssibacter sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Streptococcus ruminantium

ncbi_submitter: Bacterial and Parasitic Diseases Research Division, National Institute of Animal Health


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: human gut

ncbi_organism_name: Coprococcus comes

ncbi_submitter: EMG


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: AAFC


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: University of California, Davis


ncbi_assembly_level: Chromosome

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: GADVASU, LUDHIANA, PUNJAB, INDIA


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: wastewater

ncbi_organism_name: Clostridiaceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Megasphaera elsdenii


ncbi_country: France: Lille

ncbi_isolation_source: trachea

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_country: Czech Republic

ncbi_organism_name: Escherichia coli

ncbi_submitter: CEITEC VFU


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA: Chicago; IL

ncbi_isolation_source: water

ncbi_organism_name: Pseudomonas sp. 57B-090624

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Lewinellaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-347-I06

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: Shandong University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: EPFL


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Norway

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Havforskningsinstituttet


ncbi_country: Russia: Perm region

ncbi_isolation_source: snow; oilfield

ncbi_organism_name: Rhodococcus ruber

ncbi_strain_identifiers: IEGM 442

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Aerococcus sp. Group 2

ncbi_submitter: STATENS SERUM INSTITUT

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Aerococcus;x__Aerococcus incertae sedis;s__Aerococcus sp. Group 2


ncbi_organism_name: Burkholderia pseudomallei


ncbi_isolate: abortion

ncbi_isolation_source: Aborted fetus

ncbi_organism_name: Brucella melitensis

ncbi_strain_identifiers: B.melitensis QH61;abortion

ncbi_submitter: Lanzhou Veterinary Research Institute


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Veillonella parvula

ncbi_submitter: University of Chicago


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Leucobacter aridicollis

ncbi_strain_identifiers: BZR 201

ncbi_submitter: Institute Cytology and Genetics SB RAS


ncbi_country: France: Paris

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institute of Chemistry, National Autonomous University of Mexico (UNAM)


ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_submitter: Kenya Medical Reserach Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Roseivirgaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Peptostreptococcus anaerobius 653-L

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Candidatus Nanosyncoccus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;x__unclassified Candidatus Nanosyncoccus;s__Candidatus Nanosyncoccus sp.


ncbi_organism_name: Candidatus Arcticimaribacter sp.

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Candidatus Arcticimaribacter;x__unclassified Candidatus Arcticimaribacter;s__Candidatus Arcticimaribacter sp.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_organism_name: Weissella cibaria

ncbi_strain_identifiers: JLK

ncbi_submitter: RMIT University


ncbi_country: Netherlands

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_organism_name: Ellagibacter isourolithinifaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Leptospirales bacterium


ncbi_country: USA: New York

ncbi_isolation_source: milk

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Cornell University


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_country: Germany: Munchen

ncbi_isolation_source: urinary tract infection


ncbi_organism_name: Marinobacter sediminum

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA: Georgia

ncbi_isolation_source: Chicken processing plant

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Texas Tech University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Malaysia: Kuala Lumpur; Gombak River

ncbi_isolation_source: river water

ncbi_submitter: Tsukuba University


ncbi_isolation_source: research laboratory

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee


ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Anaerolineales bacterium UBA5069

ncbi_submitter: University of Queensland


ncbi_isolation_source: Soft tissue

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: Thailand: Chumphon

ncbi_organism_name: Escherichia coli

ncbi_submitter: Thailand-Japan Research Collaboration Center on Emerging and Re-emerging infections, Research Institute for Microbial Diseases, Osaka University


ncbi_country: USA: Peoria; IL

ncbi_isolation_source: Ground beef

ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: Tufts University


ncbi_organism_name: Paraburkholderia sediminicola

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Polynucleobacter antarcticus

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: National Institute of Biotechnology


ncbi_organism_name: Borreliella garinii

ncbi_strain_identifiers: PHez

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Verona, Italy


ncbi_country: Thailand

ncbi_isolation_source: fish cake

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_strain_identifiers: CIRM-BIA 2172

ncbi_submitter: Brigham Young University


ncbi_country: USA: Houston; TX

ncbi_isolation_source: parent strain RU1 evolved under selective conditions; Mutation accumulation gen 5900 LB GS

ncbi_strain_identifiers: RU1 MA12

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_country: Antarctica

ncbi_isolation_source: microbial mat ULC084

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: ULg


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Australia

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Murdoch University


ncbi_isolation_source: Cabernet Sauvignon

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_country: Viet Nam: Hanoi

ncbi_isolation_source: Vietnamese fermented sausage (nem chua)

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: RMIT University


ncbi_organism_name: Vibrio paracholerae

ncbi_submitter: Nanjing Agriculture University


ncbi_country: China: Hefei

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: the First Affiliated Hospital of Anhui Medical University


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: beef

ncbi_organism_name: Escherichia coli

ncbi_submitter: Shanghai Customs


ncbi_isolation_source: human gut

ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Belgium

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus columbae;x__Enterococcus columbae DSM 7374 = ATCC 51263


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Mexico: Yucatan

ncbi_submitter: CINVESTAV-IPN


ncbi_country: Norway

ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: [Clostridium] innocuum


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Pakistan

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: WTSI


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Canada

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Nocardia puris

ncbi_submitter: Technical University of Denmark


ncbi_country: Finland: Evo; Lake Alinen Mustajarvi

ncbi_isolation_source: water

ncbi_organism_name: Methylomonas paludis

ncbi_submitter: Tampere University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Norway: Viken

ncbi_isolation_source: Silage

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Norwegian University of Life Sciences


ncbi_organism_name: Bacillus sp. PM43

ncbi_submitter: Nanjing Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. PM43


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Tateyamaria sp.

ncbi_submitter: Universidad Andres Bello


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.


ncbi_organism_name: Pseudomonas mediterranea

ncbi_strain_identifiers: PVCT 3C

ncbi_submitter: University of Catania


ncbi_country: Greece: Ioninan Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Alteromonas mediterranea

ncbi_submitter: University Miguel Hernandez


ncbi_country: China

ncbi_isolation_source: waterfall

ncbi_organism_name: Undibacterium aquatile

ncbi_strain_identifiers: CCTCC AB 2015119

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: Antarctica: Ace Lake

ncbi_isolation_source: saline lake water

ncbi_organism_name: Candidatus Kaelpia imicola

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Omnitrophota;c__;o__;f__;g__Candidatus Kaelpia;s__Candidatus Kaelpia imicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;g__Candidatus Kaelpia;s__Candidatus Kaelpia imicola


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_country: China: beijing

ncbi_isolation_source: penicillin waste dregs

ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: Geneis Co.


ncbi_assembly_name: freshwater MAG --- E14_bin-1579

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: BILS


ncbi_submitter: Faculty of Medicine Siriraj Hospital, Mahidol University


ncbi_country: Canada: Ontario

ncbi_isolation_source: Animal - Chicken Broiler

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. SA20083456


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_assembly_name: Salmonella enterica CVM N38876-SQ v1.0

ncbi_country: USA: GA

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: USA: Sinepuxent Island; MD

ncbi_isolation_source: gill tissue

ncbi_organism_name: Solemya velum gill symbiont

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;s__Solemya velum gill symbiont


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: uncultured Thiotrichaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine


ncbi_assembly_name: PAIRED

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MASINDE MULIRO UNIVERSITY OF SCIENCE AND TECHNOLOGY


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Candidatus Spyradenecus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Lentisphaerales;f__Lentisphaeraceae;x__Lentisphaeraceae incertae sedis;g__Candidatus Spyradenecus;x__unclassified Candidatus Spyradenecus;s__Candidatus Spyradenecus sp.


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Draconibacterium sp.


ncbi_submitter: Hazara University


ncbi_organism_name: Blautia wexlerae


ncbi_organism_name: Faecalibacterium longum

ncbi_submitter: UIUC


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: uncultured Candidatus Coproplasma sp.

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Coproplasma;x__environmental samples;s__uncultured Candidatus Coproplasma sp.


ncbi_organism_name: uncultured Gudongella sp.


ncbi_organism_name: Balneola sp.

ncbi_submitter: University of Maryland Center for Environmental Science


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University Hospital Puerta del Mar


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Sulfitobacter sp. 1A10359

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Antarctica

ncbi_isolation_source: Antarctic lake sediment

ncbi_organism_name: bacterium

ncbi_submitter: Universidad de la Republica


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Brazil: Braganca

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_isolation_source: chicken caecal content


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: SARDAR PATEL UNIVERSITY


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Universite Laval

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_isolation_source: coastal sediment

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Mycobacterium avium subsp. silvaticum

ncbi_submitter: Friedrich-Loeffler-Institut

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. silvaticum


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Taiwan

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Syndra

ncbi_submitter: National Chung Cheng University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Isoptericola sp.

ncbi_submitter: EMG


ncbi_isolation_source: lake water

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: France: Limoges

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Universite Paris Sud


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Poland: Warsaw

ncbi_isolation_source: clinical sample

ncbi_submitter: National Medicines Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR3058

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: USA: Minnesota

ncbi_strain_identifiers: MN 2

ncbi_submitter: USDA-ARS


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Tri-Service General Hospital


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 4-203-08_S4_C2

ncbi_submitter: IGS


ncbi_organism_name: Arthrobacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pretoria


ncbi_organism_name: Burkholderiales bacterium


ncbi_organism_name: uncultured Solibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis


ncbi_country: USA

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Yoonia sp.

ncbi_submitter: Ocean University of China


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Netherlands: Drenthe

ncbi_isolation_source: agricultural soil from Anlooer Diepje brook

ncbi_organism_name: Neobacillus vireti LMG 21834

ncbi_submitter: University of Ghent

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Neobacillus;s__Neobacillus vireti;x__Neobacillus vireti LMG 21834


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Queensland


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Michigan


ncbi_organism_name: Helicobacter pylori SA31C

ncbi_submitter: MHH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: USA: California

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Rhodovulum sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_isolation_source: cave pool

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Italy: Florence

ncbi_submitter: University of Trento


ncbi_country: Venezuela

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Idiomarina sp.

ncbi_submitter: University of Southern California


ncbi_assembly_name: Rumen uncultured genome RUG10909

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Italy

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Rhodococcus sp. BP-360

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BP-360


ncbi_country: Germany

ncbi_isolation_source: flour/flour products

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_isolation_source: Soft tissue

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: South Korea: Geoje

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudoruegeria sp. M32A2M

ncbi_submitter: Systems and Synthetic Biology Laboratory


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Erysipelothrix sp.

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: UNIVERSITY OF THE BASQUE COUNTRY UPV/EHU UPV/EHU


ncbi_isolation_source: human gut

ncbi_submitter: EBI


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Charles University in Pilsen


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Hoylesella;s__Hoylesella timonensis;x__Hoylesella timonensis 4401737 = DSM 22865 = JCM 15640


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter guillouiae

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Belgium

ncbi_isolation_source: fecal incubation

ncbi_organism_name: Blautia sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_country: Brazil: Minas Gerais; Belo Horizonte

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Parma


ncbi_country: Brazil:Para; Amazon

ncbi_isolation_source: soil

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China: Guizhou; Fuquan

ncbi_organism_name: Metallibacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 1.2 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium RIFOXYA12_FULL_32_12


ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Greece: Heraklion

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Pseudomonas fluorescens

ncbi_strain_identifiers: X

ncbi_submitter: Agricultural University of Athens


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: China: Peking

ncbi_isolation_source: tissue sample

ncbi_organism_name: Serratia marcescens

ncbi_submitter: China Medical University


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: Viet Nam: Hanoi

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Roseobacter sp. HKCCA0434

ncbi_submitter: Shenzhen Research Institute, The Chinese University of Hong Kong


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Emcibacter sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Acinetobacter sp. SH024

ncbi_submitter: Broad Institute


ncbi_country: Pakistan: Peshawar

ncbi_isolation_source: EB

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Umea University


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas aeruginosa BWH056


ncbi_country: South Africa: KwaZulu-Natal

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of KwaZulu Natal


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_country: China: Qingdao

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Hungatella hathewayi

ncbi_submitter: Shandong University


ncbi_isolation_source: urine

ncbi_organism_name: Corynebacterium sp. HMSC056F09

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Ontario

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: Costa Rica

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: USA: Rhode Island

ncbi_isolate: E

ncbi_isolation_source: laboratory strain

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: D344RRF x C68;E

ncbi_submitter: brown University/Rhode Island Hospital


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: EMG


ncbi_organism_name: Sinomonas atrocyanea

ncbi_submitter: College of Resources and Environmental science


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Granulicella sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_organism_name: Allisonella histaminiformans

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Canada: Alberta

ncbi_isolation_source: Soft tissue wound

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: University of Alberta


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Indiana

ncbi_isolation_source: lung

ncbi_submitter: Purdue University


ncbi_assembly_name: Salmonella enterica CVM N31411-SQ v1.0

ncbi_country: USA: PA

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D10_bin-0600

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Peribacillus sp. RS7

ncbi_submitter: Athabasca University


ncbi_organism_name: Corynebacterium marquesiae

ncbi_submitter: OsloMet


ncbi_assembly_name: Rumen uncultured genome RUG11545

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bariatricus sp. HCP28S3_C11

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_submitter: Yangzhou University


ncbi_country: China: Beijing

ncbi_isolation_source: Vegetable product

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Serratia ureilytica


ncbi_isolation_source: long-term freshwater anammox column reactor

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Environmental Preservation Engineering, Civil and Environmental Engineering, Hiroshima University


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Oxalobacter formigenes

ncbi_submitter: Cleveland Clinic


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: Pseudomonas paracarnis

ncbi_submitter: National Agronomic Instiute of Tunisia


ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: Comamonas thiooxydans

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: France

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Inserm


ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_submitter: Technical University of Munich


ncbi_country: China: Yunnan

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Caldimicrobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: US Food and Drug Administration


ncbi_country: Chile

ncbi_isolation_source: stool sample

ncbi_organism_name: Shigella boydii 248-1B

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia coli

ncbi_submitter: BGI-Shenzhen


ncbi_country: Germany: Freising

ncbi_isolation_source: Caecal content

ncbi_organism_name: Blautia producta

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Tennessee Veterinary College


ncbi_country: Pacific Ocean: Mariana trench

ncbi_isolate: LMO Bin2

ncbi_isolation_source: marine sediment; cultured under 152Mpa pressure

ncbi_organism_name: Stutzerimonas kunmingensis

ncbi_strain_identifiers: LMO Bin2

ncbi_submitter: Shanghai Jiaotong UNI


ncbi_country: Canada: Ontario

ncbi_isolation_source: river water

ncbi_submitter: Food and Water Safety Consortium


ncbi_isolation_source: fecal material

ncbi_organism_name: Oxalobacter aliiformigenes

ncbi_submitter: University of Western Ontario


ncbi_country: USA: NY

ncbi_isolation_source: grape xylem sap

ncbi_organism_name: Methylobacterium sp. GXF4

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: Streptomyces zhihengii

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_isolation_source: water from concrete sewer

ncbi_organism_name: Acidithiobacillus concretivorus

ncbi_submitter: Fundacion Ciencia y Vida


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Clostridium baratii

ncbi_submitter: Wellcome Sanger Institute

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Australia

ncbi_isolation_source: Chardonnay

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_assembly_name: IMG-taxon 2639762528 annotated assembly

ncbi_organism_name: Bacillus sp. cl96

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. cl96


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_isolate: clinical

ncbi_isolation_source: clinical

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: clinical

ncbi_submitter: Faculty of Health Sciences


ncbi_country: Sweden

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_country: USA: Ohio

ncbi_isolation_source: WOUND/ABSCESS

ncbi_submitter: JCVI


ncbi_country: India: Bengaluru

ncbi_isolation_source: Gut

ncbi_organism_name: Bacillus cereus

ncbi_submitter: CHRIST University (Deemed to be University)


ncbi_isolation_source: surface seawater

ncbi_organism_name: Pseudoalteromonas neustonica

ncbi_submitter: Shandong University Qingdao Campus


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: New York

ncbi_isolation_source: Laboratory Heat Treated Raw Milk

ncbi_submitter: Cornell University


ncbi_country: Netherlands: Flevoland

ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen Plant Research


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: blood

ncbi_submitter: Child Health Research Foundation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


gtdb_type_species_of_genus: t

ncbi_country: USA: North Carolina

ncbi_isolation_source: skin of Irish thoroughbred horse

ncbi_organism_name: Macrococcus equipercicus

ncbi_submitter: Teagasc Food research


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Pseudomonas luteola

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Duodenibacillus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Acetobacter malorum DSM 14337

ncbi_submitter: Tokyo University of Agriculture


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Fimbriiglobus sp.

ncbi_submitter: EPFL


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Alberta


ncbi_isolation_source: Lysogeny broth

ncbi_submitter: Shenzhen People's Hospital


ncbi_country: USA: Bloomington; INDIANA

ncbi_isolation_source: soil

ncbi_organism_name: Myxococcus xanthus

ncbi_submitter: ETH Zurich


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: University College Cork


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;f__Candidatus Gastranaerophilaceae;x__unclassified Candidatus Gastranaerophilaceae;s__Candidatus Gastranaerophilaceae bacterium


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: uncultured Bdellovibrio sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Mycolicibacterium septicum

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: uncultured Holdemania sp.


ncbi_organism_name: uncultured Maribellus sp.


ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: Nimes University Hospital


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Minnesota Department of Health Infectious Disease Laboratory Submission Group


ncbi_organism_name: Salmonella sp. SJTUF15595

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Slackia isoflavoniconvertens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Ottowia sp.


ncbi_organism_name: Rickettsia conorii subsp. raoultii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia conorii;sb__Rickettsia conorii subsp. raoultii


ncbi_organism_name: Prochlorococcus marinus

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: bacterium

ncbi_submitter: SCOPE


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: cold seep

ncbi_organism_name: Kiritimatiellota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_country: USA: Flathead Lake; MT

ncbi_isolation_source: lake water; MPn+N+C amendment

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Montana


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_submitter: The University of Melbourne


ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Megamonas funiformis


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Caulobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Environmental Microbiology OMICS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium


ncbi_assembly_name: freshwater MAG --- Umea1p2_bin-0931

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Pseudomonas tohonis

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Minesota

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NCTR/US FDA


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus T47161

ncbi_submitter: Broad Institute


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: EMG


ncbi_country: China: Moutai town in Guizhou near the Chishui river

ncbi_organism_name: Laceyella sacchari

ncbi_submitter: Guizhou university


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: China: Guizhou; Fuquan

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: Rumen uncultured genome RUG12829

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Maine

ncbi_submitter: University of Maine at Presque Isle


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Bacillales bacterium UBA7649

ncbi_submitter: University of Queensland


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Tsinghua University


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: Russia: Vorkuta

ncbi_isolation_source: tundra soil

ncbi_organism_name: Methylobacter psychrophilus

ncbi_submitter: Tampere University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Decatur; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Canada: Ontario

ncbi_isolation_source: Ground beef

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: uncultured bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: penis of a Caspian seal (Phoca caspica)

ncbi_organism_name: Corynebacterium caspium DSM 44850

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: BGI


ncbi_organism_name: Duncaniella muris


ncbi_country: USA: TX

ncbi_isolation_source: swine

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_isolation_source: Human feces

ncbi_organism_name: Eubacterium sp. LMAG:61

ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. LMAG:61


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Streptococcus agalactiae


ncbi_organism_name: Holdemanella porci

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Canada: Alberta

ncbi_organism_name: Pseudomonas savastanoi pv. phaseolicola

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. phaseolicola


ncbi_country: Spain: Barcelona

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: ITQB


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: IA

ncbi_isolation_source: root

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Streptomyces griseoluteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Korea Polar Research Institute


ncbi_country: United Kingdom: Sheffield

ncbi_isolation_source: Laboratory reference strain

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Bath


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_country: Viet Nam

ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Treponema sp.


ncbi_country: Thailand: Chiang Mai

ncbi_isolation_source: food

ncbi_organism_name: Shigella sonnei

ncbi_submitter: JCVI


ncbi_organism_name: Shigella sp. FC6550

ncbi_submitter: Ministry of Science and Technology of China


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Isoptericola cucumis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Enterobacter mori


ncbi_country: Bangladesh

ncbi_isolation_source: wash from infected hand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Bangladesh Agricultural University


ncbi_assembly_name: Xanthomonas sp. 97M

ncbi_country: Mali

ncbi_isolation_source: surface-sterilized leaves

ncbi_organism_name: Xanthomonas maliensis

ncbi_submitter: Colorado State University


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Biomin Research Center


ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Russia: Cape Chukochii; East Siberian Sea

ncbi_isolation_source: permafrost sediment

ncbi_organism_name: Peptostreptococcaceae bacterium

ncbi_submitter: Princeton University


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lacticaseibacillus suilingensis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Sporolactobacillus inulinus CASD

ncbi_strain_identifiers: CASD

ncbi_submitter: The Institute of Microbiology, Chinese Academy of Sciences


ncbi_submitter: Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University


ncbi_country: USA: MN

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: uncultured Idiomarina sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces sp. NPDC002573

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Nanjing University


ncbi_country: China

ncbi_isolation_source: Respiratory Medicine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Guangzhou Medical University


ncbi_isolation_source: Soft cheese

ncbi_organism_name: Escherichia coli

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: USA: NC

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. (in: high G+C Gram-positive bacteria)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Hangzhou Wahaha Group Co., LTD.


ncbi_isolation_source: freshwater

ncbi_organism_name: Tolypothrix sp. FACHB-123

ncbi_submitter: South China Normal University


ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli P0304777.13

ncbi_submitter: IGS


ncbi_isolation_source: mouse gut metagenome


ncbi_isolation_source: marine metagenome


ncbi_organism_name: Natronospira elongata

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: uncultured Angelakisella sp.


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA61

ncbi_submitter: Broad Institute


ncbi_country: France

ncbi_submitter: ANSES


ncbi_country: Iraq

ncbi_organism_name: Brucella abortus 67/93


ncbi_organism_name: SAR116 cluster bacterium

ncbi_submitter: University of the Phillipines Diliman

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__SAR116 cluster bacterium


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: EMG


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Streptococcus mitis SK616

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus mitis group;s__Streptococcus mitis;x__Streptococcus mitis SK616


ncbi_country: USA: Mount Olive; NC

ncbi_isolation_source: cucumber fermentation brine

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: USDA-ARS


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: France: Reunion island

ncbi_isolation_source: sugarcane

ncbi_organism_name: Xanthomonas albilineans

ncbi_submitter: CIRAD


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: India: Tamilnadu

ncbi_isolation_source: date palm tree rhizospheric soil

ncbi_organism_name: Exiguobacterium sp. TNDT2

ncbi_submitter: National College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. TNDT2


ncbi_isolation_source: coral

ncbi_organism_name: Alkalimarinus coralli

ncbi_strain_identifiers: SCSIO 12582

ncbi_submitter: South China Sea Institute of Oceanology


ncbi_country: Norway

ncbi_isolation_source: Culture

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_country: Australia: VIC

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The University of Melbourne


ncbi_country: India: Buldhana

ncbi_isolation_source: Lonar Lake Sediments

ncbi_organism_name: Geoalkalibacter halelectricus

ncbi_submitter: Indian Institute of Science Education and Research Mohali


ncbi_country: Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Fischerella muscicola PCC 7414

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Belgium

ncbi_isolation_source: Beer

ncbi_organism_name: Acetobacter lambici

ncbi_submitter: Ghent University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Jyvaskyla


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany: Braunschweig

ncbi_isolation_source: feces

ncbi_organism_name: Xylanibacter muris

ncbi_strain_identifiers: PMUR

ncbi_submitter: Helmholtz Centre for Infection Research - HZI


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_isolation_source: gastric lavage

ncbi_organism_name: Mycobacterium gastri

ncbi_submitter: University of Trento


ncbi_submitter: China Agricultural University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: Univeristy of Aberdeen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Actinoplanes sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eggerthella sp.


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Crm

ncbi_country: South Korea

ncbi_isolation_source: Korean traditional fermented seafood

ncbi_organism_name: Salinicoccus carnicancri Crm

ncbi_strain_identifiers: Crm

ncbi_submitter: Kyung Hee University


ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: Rutgers University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: South Korea: Goyang-si

ncbi_isolation_source: sputum

ncbi_submitter: Korea Disease Control and Prevention Agency


ncbi_country: United Kingdom: Staffordshire

ncbi_organism_name: Pseudomonas sp. PA-6-3F

ncbi_submitter: NIAB East Malling Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China

ncbi_isolation_source: Tissue sample

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA: Little Rock; AR

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: human gut

ncbi_organism_name: Marvinbryantia formatexigens

ncbi_submitter: EMG


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Liaocheng university


ncbi_isolation_source: soil

ncbi_organism_name: Tepidibacter mesophilus

ncbi_submitter: RIKEN Bioresource Center, Japan Collection of Microbes


ncbi_country: USA: Cincinnati; Ohio

ncbi_isolation_source: drinking water

ncbi_organism_name: Legionella pneumophila subsp. pneumophila

ncbi_submitter: US EPA


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Streptomyces sanyensis

ncbi_submitter: Hainan University


ncbi_organism_name: Marisediminitalea sp.

ncbi_submitter: Tang lab


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Bradyrhizobium sp. USDA 313

ncbi_strain_identifiers: USDA 313

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolate: NECK SKIN

ncbi_organism_name: Campylobacter jejuni

ncbi_strain_identifiers: NECK SKIN;Campylobacter jejuni

ncbi_submitter: LSHTM


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: United Kingdom

ncbi_isolation_source: root from Bare Fallow land

ncbi_organism_name: Pseudomonas sp. BF-RE-29

ncbi_submitter: Rothamsted Research


ncbi_isolation_source: beef

ncbi_submitter: Nankai University


ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_country: United Kingdom: Lincoln

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ATCC 33591_Arg1

ncbi_submitter: University of Lincoln


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Shanghai

ncbi_isolation_source: secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Public Health Clinical Center


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: University of Queensland


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Agricultural University of Athens


ncbi_country: Singapore

ncbi_isolation_source: Field

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Spain:Blanes Bay Microbial Observatory; Mediterranean Sea

ncbi_isolation_source: single cell amplified by MDA; surface seawater

ncbi_organism_name: Pelagibacterales bacterium SAG-MED19

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Pelagibacterales bacterium SAG-MED19


ncbi_assembly_name: Rumen uncultured genome RUG421

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_assembly_name: IMG-taxon 2593339159 annotated assembly

ncbi_organism_name: Lachnobacterium bovis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Alar crease Swab

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: a non-AIDS patient with acute respiratory disease

ncbi_organism_name: Mycoplasmopsis fermentans M64

ncbi_submitter: Yang-Ming University


ncbi_isolation_source: Blood

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_assembly_name: Morganella morganii F675

ncbi_organism_name: Morganella morganii F675

ncbi_submitter: URMITE


ncbi_country: Japan: Chubu

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Anaerostipes butyraticus

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Thiomonas arsenitoxydans

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Actinobaculum sp.


ncbi_country: France: Normandy

ncbi_isolation_source: sink trap

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_country: India

ncbi_isolation_source: Nosocomial

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Republic of the Congo: Pointe-Noire

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Microgenomates group bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;x__unclassified Microgenomates group;s__Microgenomates group bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Nanjing University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Nanchang University, Nanchang University


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces rubiginosohelvolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Oceanobacter sp.

ncbi_submitter: Japan Agency for Marine-Earth Science and technology (JAMSTEC)


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: uncultured Ignavibacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;s__Candidatus Scatomorpha intestinigallinarum


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor nuttalli


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Baskent University Medical Faculty


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Kordiimonas sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Escherichia coli

ncbi_submitter: United State Department of Agriculture


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: China: Xiaochaidan Lake

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolate: isolate

ncbi_strain_identifiers: isolate

ncbi_submitter: Indian Biological Data Centre


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: France: Paris

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Italy

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_strain_identifiers: DLBL 07

ncbi_submitter: Microbion SrL


ncbi_country: Netherlands: Delft; Harnasch polder WWTP

ncbi_isolate: labscale reactor_MAG9

ncbi_isolation_source: aerobic granular sludge sequencing batch reactor fed with glycerol; inoculum derived from raw wastewater

ncbi_organism_name: Bacteroidota bacterium

ncbi_strain_identifiers: labscale reactor_MAG9

ncbi_submitter: TU Delft

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Atlantic Ocean:Mid Cayman Rise

ncbi_isolation_source: Beebe hydrothermal vent plume at at depth of 4900m

ncbi_organism_name: Dehalococcoidia bacterium UBA1151

ncbi_submitter: University of Queensland


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Poland: Torun

ncbi_isolation_source: Milk product waste

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: BactoTech


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Stenotrophomonas geniculata

ncbi_submitter: Instituto Mexicano del Seguro Social


ncbi_country: Kenya: Kakamega

ncbi_isolation_source: P5 gut compartment

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: South Korea: Jinju

ncbi_isolation_source: throat swab

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Japan

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Nagoya University


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: USA: Minnesota

ncbi_isolation_source: pooled bronchial wash from ICU patient from Kuwait

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Minnesota Department of Health


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Colombia: Cali

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. R066


ncbi_country: China: Ningbo

ncbi_isolation_source: pus

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Ningbo First Hospital


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Finland

ncbi_organism_name: Arcanobacterium phocae

ncbi_submitter: Helsinki University


ncbi_country: Russia: Altai

ncbi_isolation_source: shubat

ncbi_organism_name: Lentilactobacillus kefiri

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: India

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis OSDD071

ncbi_submitter: Open Source Drug Discovery


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R814;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: USA

ncbi_isolation_source: BAL

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: University of Michigan


ncbi_country: Australia

ncbi_isolation_source: wound swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: stool

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Goldcoast


ncbi_country: China: 69 Yongding Road; Haidian District; Beijing

ncbi_isolation_source: urine

ncbi_submitter: China Medical University


ncbi_country: China: Zhengzhou

ncbi_isolation_source: blood

ncbi_submitter: First Affiliated Hospital of Zhengzhou University


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Southern University of Science and Technology