ncbi_organism_name: Vreelandella andesensis

ncbi_submitter: Zhejiang Sci-Tech University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Cardiff University School of Medicine


ncbi_assembly_level: Complete Genome

ncbi_country: China: Shenzhen

ncbi_isolation_source: shrimp

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


gtdb_representative: t

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_assembly_level: Scaffold

ncbi_country: Mali: Point G Hospital

ncbi_isolation_source: Bodily fluid

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis;x__Mycobacterium tuberculosis variant bovis MAL010093


ncbi_refseq_category: reference genome

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Chalcis sispes


ncbi_country: USA:New York; CentralBronx

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Kuwait: Kuwait City; Kuwait Desert

ncbi_isolate: KUW bin4

ncbi_isolation_source: soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_strain_identifiers: KUW bin4

ncbi_submitter: Monash University


ncbi_country: United Kingdom:Bristol

ncbi_isolation_source: not known


ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Shewanella algae

ncbi_submitter: Sanya Peoples Hospital


ncbi_country: Nepal

ncbi_organism_name: Massilia sp. NP310

ncbi_submitter: Korea University


ncbi_organism_name: Bradyrhizobium sp. SZCCHNS1054

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: China: Yunnan Province

ncbi_isolation_source: root nodules

ncbi_organism_name: Microvirga yunnanensis

ncbi_submitter: Hebei university


ncbi_country: South Korea: Yuseong-gu

ncbi_isolation_source: root

ncbi_organism_name: Mucilaginibacter sp. UR6-1

ncbi_submitter: Chungnam National University


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Arachnia propionica

ncbi_submitter: EMG


ncbi_country: Viet Nam

ncbi_isolation_source: Stool

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Department of Bacteriology I, National Institute of Infectious Diseases


ncbi_country: Chile

ncbi_submitter: University of Pittsburgh


ncbi_country: Lebanon

ncbi_organism_name: Brucella sp. CMUL 035

ncbi_strain_identifiers: CMUL 035

ncbi_submitter: LAU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;x__unclassified Brucella;s__Brucella sp. CMUL 035


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: China: SiChuan

ncbi_isolation_source: pig farm

ncbi_organism_name: Streptococcus suis

ncbi_submitter: China Agriculture University


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Rhizobium johnstonii

ncbi_submitter: The University of Sheffield


ncbi_organism_name: Serratia marcescens

ncbi_submitter: McMaster University


ncbi_organism_name: Victivallaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_assembly_level: Chromosome

ncbi_organism_name: Selenomonas sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Marinosulfonomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Planococcus sp. 1R117A

ncbi_submitter: Anhui University of Chinese Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Planococcus;x__unclassified Planococcus (in: firmicutes);s__Planococcus sp. 1R117A


ncbi_organism_name: Amycolatopsis sulphurea

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Paraprevotella sp.


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: uncultured Staphylococcaceae bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Clostridium sp. LP20

ncbi_submitter: Guizhou Medical University


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Xuzhou Medical University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Streptomyces sp. NPDC017859


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: China: Maanshan Magnetite Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Banpo Antimony Mine; Guizhou Province


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_submitter: University of Southampton


ncbi_organism_name: Clostridium neonatale

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Alistipes putredinis


ncbi_assembly_name: freshwater MAG --- Umea_bin-07738

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: PA

ncbi_isolation_source: snow king peach

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Xinjiang; Changji

ncbi_isolation_source: Anal swab

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: India

ncbi_isolation_source: chicken intestine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: EMG


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Ruminococcaceae bacterium UBA5290

ncbi_submitter: University of Queensland


ncbi_country: China: Guangzhou; Guangdong

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhongshan School of Medicine, Sun Yat-sen University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Sphingomonas bacterium

ncbi_submitter: Palmer LTER


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Vibrio sp. V06_P1A73T115

ncbi_submitter: Nanjing Agriculture University


ncbi_submitter: Kennedy Institute of Rheumatology, University of Oxford


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_submitter: National Cancer Institute - NIH


ncbi_isolation_source: stool


ncbi_country: USA: Delaware

ncbi_isolation_source: laboratory

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: BW25113 frmA KO

ncbi_submitter: University of Delaware


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Desulfurobacteriaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: Australia: Victoria

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: CSIRO


ncbi_country: Bangladesh

ncbi_organism_name: Escherichia coli P0304777.4

ncbi_submitter: IGS


ncbi_organism_name: Candidatus Methylopumilus universalis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: China: Beijing

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: China Agricultural University


ncbi_organism_name: Verrucomicrobiia bacterium


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_country: China: Qingdao; Jiaozhou Bay

ncbi_isolation_source: surface seawater of the Jiaozhou Bay; Qingdao; China

ncbi_organism_name: Marinomonas foliarum

ncbi_strain_identifiers: JZW

ncbi_submitter: Ocean University of China


ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: China

ncbi_organism_name: Massilia alkalitolerans DSM 17462

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus M24487

ncbi_submitter: Broad Institute


ncbi_organism_name: Stenotrophomonas hibiscicola

ncbi_submitter: Sichuan University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Coprococcus comes

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: United Kingdom: Wales

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Swansea University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of Chicago


ncbi_country: USA: OH

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia sp. 4726-5

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Faecalibacillus intestinalis


ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Salmonella enterica subsp. enterica


ncbi_country: India: Alapuzha district of Kerala

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Kerala Veterinary and Animal Sciences University


ncbi_organism_name: Lysinibacillus sp. GJ-1

ncbi_submitter: Luzhoulaojiao Company Limited


ncbi_organism_name: uncultured Alteromonas sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: France: Brest

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_country: United Kingdom

ncbi_isolation_source: Bovine Faeces

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Agriculture and Forestry University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Granulicatella elegans ATCC 700633

ncbi_submitter: Broad Institute


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Holdemania sp.

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: SurvCARE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Pseudomonas sp. P105

ncbi_submitter: Agroscope


ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: Brucella pseudogrignonensis

ncbi_submitter: Aarhus University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 301

ncbi_organism_name: Rubripirellula sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Mesobacillus sp. MER 33

ncbi_strain_identifiers: MER 33

ncbi_submitter: Jet Propulsion Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Mesobacillus;x__unclassified Mesobacillus;s__Mesobacillus sp. MER 33


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_organism_name: Waltera sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Norway: Bergen

ncbi_isolation_source: Sewage

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Marine Research


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of KwaZulu Natal


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Washington


ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_assembly_name: Salmonella enterica CVM N48688 v1.0

ncbi_country: USA: MD

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: water

ncbi_organism_name: Francisella tularensis subsp. novicida

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Helicobacter pylori


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Monash University


ncbi_country: USA: Washington DC

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: WRAIR


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Staphylococcus carnosus

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: urine

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: USA: Saint Louis; MO

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St. Louis


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Enterocloster;s__Enterocloster hominis (ex Liu et al. 2021)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_isolation_source: turkey

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: Japan

ncbi_isolation_source: fecal samples

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Department of Statistical Genetics, Osaka University Graduate School of Medicine


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: China: Jinhua

ncbi_isolation_source: fecal swab

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: China: Mazuyan; Jiangxi

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium sp. M10

ncbi_submitter: Northwest A&F University


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Mycolicibacterium fortuitum

ncbi_submitter: Tecnologico de Monterrey


ncbi_organism_name: Citromicrobium bathyomarinum

ncbi_submitter: Shenzhen University


ncbi_assembly_name: Rumen uncultured genome RUG312

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Clostridioides difficile P72

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: United Kingdom: Salisbury

ncbi_isolation_source: Laboratory stock

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: University of Exeter


ncbi_isolation_source: soil 0-10 cm from grassland

ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: ROTHAMSTED RESEARCH


ncbi_organism_name: Draconibacterium sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: China: Tonglu City; Zhejiang Province

ncbi_isolation_source: rice rhizosphere

ncbi_organism_name: Microbacterium barkeri 2011-R4

ncbi_submitter: Zhejiang University


ncbi_country: France: Nice

ncbi_isolation_source: seawater

ncbi_strain_identifiers: NCIMB 2033

ncbi_submitter: Shandong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Alteromonadales;f__Pseudoalteromonadaceae;g__Pseudoalteromonas;s__Pseudoalteromonas maricaloris;x__Pseudoalteromonas flavipulchra NCIMB 2033 = ATCC BAA-314

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S11

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: USDA 174

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Estonia

ncbi_isolation_source: wound secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD17232

ncbi_submitter: Broad Institute


ncbi_country: Brazil: Rio Grande do Sul

ncbi_isolation_source: Buffalo raw milk refrigeration tanks

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Universidade Federal do Rio Grande do Sul


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Hilton; NY

ncbi_isolation_source: Soil

ncbi_organism_name: Mammaliicoccus vitulinus

ncbi_strain_identifiers: RIT 801

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: North West University


ncbi_country: Italy

ncbi_isolation_source: rectal swab

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_country: Russia: Republic of Tatarstan

ncbi_isolation_source: potato rhizosphere

ncbi_organism_name: Brevibacterium sediminis

ncbi_submitter: Kazan Federal University


ncbi_country: Germany: Berlin

ncbi_isolation_source: gastric corpus

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Max von Pettenkofer-Institut


ncbi_organism_name: Dialister invisus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: South Korea: Namhae

ncbi_isolation_source: Potato bacterial wilt

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: National Institute of Agricultural Sciences, RDA


ncbi_organism_name: Lutibacter sp. Hel_I_33_5

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: United Kingdom: London

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus intermedius NCTC 11048

ncbi_submitter: Modernising Medical Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;x__Staphylococcus intermedius group;s__Staphylococcus intermedius;x__Staphylococcus intermedius NCTC 11048


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: United Kingdom

ncbi_isolation_source: Portion of Sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: Liverpool Epidemic Strain

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_country: New Zealand: Hikurangi Margin

ncbi_isolation_source: Glendhu Ridge methane seep

ncbi_organism_name: Methylophaga sp.

ncbi_submitter: GNS Science


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bilophila sp.


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D4_bin-0309

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_organism_name: Enterobacter hormaechei subsp. steigerwaltii

ncbi_submitter: JCVI


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Thailand: Phatthalung

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Ralstonia pseudosolanacearum GMI1000

ncbi_submitter: Genoscope

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia;x__Ralstonia solanacearum species complex;s__Ralstonia pseudosolanacearum;x__Ralstonia pseudosolanacearum GMI1000


ncbi_country: USA: San Fransisco

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: University of California, Davis


ncbi_organism_name: Brevundimonas sp. LjRoot202

ncbi_submitter: Aarhus University


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11812

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Desulfobacterales bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Ruminococcus sp. JL13D9

ncbi_submitter: Native Microbials


ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_organism_name: uncultured Rikenella sp.


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Ruian People's Hospital


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_organism_name: Anaerostipes hadrus


ncbi_organism_name: Enterobacter cloacae complex sp. 326C3

ncbi_submitter: Bacteriology laboratory, Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 326C3


ncbi_organism_name: Dysosmobacter welbionis


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_9 depth 9-12 cm

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Vienna


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Harbin Medical University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Nanjing

ncbi_isolation_source: Laboratory-scale bioreactor

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: NanJing University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Tianjin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tianjin Medical University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Kiritimatiellia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_country: China

ncbi_organism_name: Salmonella enterica

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter suis

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_country: Argentina: Victoria

ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: USA

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Tennessee


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Crenothrix polyspora

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolate: metabat2_XCR1_HOM_7857_bwa.80 MAG

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_strain_identifiers: metabat2_XCR1_HOM_7857_bwa.80 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Banfield Lab, University of California, Berkeley


gtdb_type_species_of_genus: t

ncbi_isolation_source: seawater

ncbi_organism_name: Verticiella sediminum

ncbi_submitter: Inner Mongolia University


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Zhejiang University


ncbi_country: China: Wuyi; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: South china normal university


ncbi_assembly_name: Rumen uncultured genome hRUG872

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: Quadram Institutte


ncbi_isolation_source: food

ncbi_organism_name: Cronobacter dublinensis

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Chlamydiae bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;x__environmental samples;s__uncultured Chlamydiae bacterium


ncbi_assembly_name: IMG-taxon 2593339217 annotated assembly

ncbi_organism_name: Ruminococcaceae bacterium P7

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Canada: Alberta

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_isolation_source: blood from hospitalized preterm neonate

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Maryland


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1396

ncbi_submitter: Broad Institute


ncbi_organism_name: Vibrio sp. 1874

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: [Clostridium] scindens VE202-05

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F22898


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Longicatena caecimuris

ncbi_submitter: BGI-Shenzhen


ncbi_country: Greece: Epirus

ncbi_isolation_source: raw sheep milk

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: USA: Montana La Duke Hot Spring

ncbi_isolation_source: water

ncbi_organism_name: Chroogloeocystis siderophila 5.2 s.c.1

ncbi_submitter: Xuefeng LU


ncbi_country: China: Longnan; Gansu Province

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Cytobacillus firmus

ncbi_submitter: Technical University of Denmark


ncbi_country: Spain

ncbi_isolation_source: urine

ncbi_submitter: GlaxoSmithKline


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasma sp.

ncbi_submitter: EMG


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: Christian Medical College


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Mageeibacillus sp. UBA1255

ncbi_submitter: University of Queensland


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Selenomonas sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: South Africa

ncbi_isolation_source: lung

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: cystic fibrosis sputum

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: SC


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Acinetobacter sp. N54.MGS-139

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Streptomyces physcomitrii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: Psychrobacter sp JCM18902

ncbi_isolate: Psychrobacter sp. JCM18902

ncbi_isolation_source: porpoise

ncbi_organism_name: Psychrobacter sp. JCM 18902

ncbi_strain_identifiers: Psychrobacter sp. JCM18902

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Xanthomonas campestris pv. vitistrifoliae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond E1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Cyanobium sp. E1_MAG_00037

ncbi_submitter: University of Montreal


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Algimonas sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Pyramidobacter porci

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: Streptomyces pilosus


ncbi_organism_name: Salmonella sp. NW457

ncbi_submitter: Sichuan University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas sp. TMP25

ncbi_submitter: Institute of Microbiology, National Academy of Sciences of Belarus


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Campylobacter molothri

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: South Africa: Ethekwini district; KwaZulu-Natal

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater effluent sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: The REHAB Consortium


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: bronchoalveolar lavage

ncbi_submitter: Aarhus University


ncbi_country: China: Hefei

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: the First Affiliated Hospital of Anhui Medical University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human gut

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: India

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_assembly_name: Rumen uncultured genome hRUG857

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Treponema sp.


ncbi_country: China: Beijing

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institutes of Food and Drug Control


ncbi_country: China: Anhui

ncbi_organism_name: Sinorhizobium glycinis

ncbi_strain_identifiers: CCBAU 23380

ncbi_submitter: Mesorhizobium mediterraneum CCBAU 01399


ncbi_organism_name: Flavobacterium lindanitolerans

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Intestinibacter sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Zhejiang

ncbi_organism_name: Enterobacter quasiroggenkampii

ncbi_submitter: The Second Affiliated Hospital Zhejiang University School of Medicine


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Idiomarina sp.

ncbi_submitter: Harvard University


ncbi_organism_name: bacterium

ncbi_submitter: University of Vienna


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolate: CB2 bin14

ncbi_organism_name: Bacteroidales bacterium

ncbi_strain_identifiers: CB2 bin14

ncbi_submitter: China Agricultural University


ncbi_country: Papua New Guinea: D Entrecasteaux Islands

ncbi_isolation_source: PNG CO2 seep-control site

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Australian Institute of Marine Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus H58198

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: USA: Durham; NH

ncbi_isolation_source: root nodules

ncbi_organism_name: Pantoea sp. alder81

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Streptococcus thermophilus LMD-9

ncbi_submitter: US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria Genome Consortium and Fidelity Systems Inc.


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0108


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: blood

ncbi_submitter: Child Health Research Foundation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Bartonella bacilliformis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_submitter: Quadram Institutte


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus


ncbi_assembly_name: IMG-taxon 2615840641 annotated assembly

ncbi_organism_name: Lysobacter sp. yr284

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: South Korea: Jinju

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_isolation_source: phycosphere of toxic marne Dinoflagellate

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Zhejiang Ocean University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: South Africa: Driefontein mine in Carletonville district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Melioribacter sp.

ncbi_submitter: University Duisburg-Essen


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_submitter: Monash University


ncbi_submitter: IMPERIAL COLLEGE LONDON

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China

ncbi_isolation_source: freshwater

ncbi_organism_name: Nostoc paludosum FACHB-159

ncbi_submitter: South China Normal University


ncbi_isolation_source: frozen raw shrimp

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189


ncbi_country: Ireland

ncbi_organism_name: Cronobacter turicensis

ncbi_submitter: FDA/CFSAN


ncbi_country: Argentina: Salta

ncbi_isolation_source: Apis mellifera subsp. ligustica bee bread

ncbi_organism_name: Enterococcus avium

ncbi_submitter: NO PROBLEMS


ncbi_organism_name: Streptomyces aureocirculatus

ncbi_strain_identifiers: NRRL ISP-5401

ncbi_submitter: University of Illinois


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: EPFL


ncbi_country: Australia: Lake Sunday; South Australia

ncbi_isolation_source: bacterial gall

ncbi_organism_name: Rathayibacter toxicus

ncbi_submitter: Australian Government’s Cooperative Research Centres Program


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: freshwater MAG --- Ja1-D4_bin-352

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes


ncbi_country: China: Qingdao

ncbi_isolation_source: sediment from coastal area

ncbi_organism_name: Flaviflexus huanghaiensis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_assembly_name: Rumen uncultured genome RUG14893

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Washington


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Smithella sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Herbidospora cretacea

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_organism_name: Halopseudomonas sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Spain: Asturias

ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-424-A03

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Halobacterium sp.

ncbi_submitter: Tang lab


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Integrative Pharmacogenomics Institute (iPROMISE)


ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Beijing

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Beijing Ditan Hospital, Capital Medical University


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Brevundimonas diminuta

ncbi_submitter: Innovative Genomics Institute


ncbi_assembly_name: Rumen uncultured genome RUG11813

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Austria

ncbi_isolation_source: intestinal tract

ncbi_organism_name: Escherichia coli

ncbi_submitter: IST Austria


ncbi_organism_name: uncultured Acetobacter sp.


ncbi_isolation_source: human gut

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Scandinavium goeteborgense

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Syntrophomonas wolfei

ncbi_submitter: University of Queensland


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Canada

ncbi_isolation_source: stool sample

ncbi_submitter: Public Health Agency of Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni 00-2544


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: Brachyspira aalborgi


ncbi_country: South Africa: Limpopo; Nylsvlei Nature Reserve

ncbi_isolation_source: rhizosphere of grass

ncbi_organism_name: Pseudomonas monsensis

ncbi_submitter: Agricultural Research Council


ncbi_organism_name: Mesonia maritima

ncbi_strain_identifiers: NCAIM B.02633

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: Human feces

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Chlamydiia bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: National Institute for Public Health and the Environment


ncbi_organism_name: Halobacteriovorax sp. RZ-2

ncbi_submitter: Shandong University at Weihai


ncbi_isolate: SPRUCE 124

ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_strain_identifiers: SPRUCE 124

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Kineococcus sp. SYSU DK017

ncbi_strain_identifiers: SYSU DK017

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: Tsinghua University


ncbi_organism_name: Candidatus Avelusimicrobium sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Laboratory of Veterinary Bacteriology UFRGS


ncbi_organism_name: Embleya sp. NPDC059237

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University Bourgogne Franche-Comte, INRAE, Institut Agro Dijon


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Rural Development Administration


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Bacillus cereus group sp. BceL204

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL204


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Salibacteraceae bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mediterraneibacter gnavus


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: Gill chamber Rimicaris exoculata metagenome

ncbi_organism_name: uncultured Zetaproteobacteria bacterium

ncbi_submitter: The French Research Institute for Exploitation of the Sea

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatius Mariprofundia;x__environmental samples;s__uncultured Zetaproteobacteria bacterium


ncbi_organism_name: Terriglobia bacterium


ncbi_country: Antarctica: Eastern Antarctica; McMurdo Dry Valleys

ncbi_isolate: MDV bin54

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: MDV bin54

ncbi_submitter: Monash University


ncbi_isolation_source: food production metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: freshwater MAG --- Loclat_bin-09341

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: KU Leuven


ncbi_organism_name: uncultured Spirochaetaceae bacterium


ncbi_organism_name: Bilophila wadsworthia


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Utah

ncbi_isolation_source: blood stream

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Intermountain Healthcare


ncbi_country: China: Zhejiang

ncbi_isolation_source: pickled radish

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: uncultured Atribacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Atribacterota;x__environmental samples;s__uncultured Atribacterota bacterium


ncbi_organism_name: Chlamydia trachomatis L2/434/Bu(f)

ncbi_submitter: National Institute of Health, Portugal

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;x__Chlamydia/Chlamydophila group;g__Chlamydia;s__Chlamydia trachomatis;x__Chlamydia trachomatis L2/434/Bu;x__Chlamydia trachomatis L2/434/Bu(f)


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: BGI


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli K-12

ncbi_submitter: New England Biolabs


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Australia

ncbi_isolation_source: rectal swab

ncbi_organism_name: Serratia marcescens


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: Barn Environment

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: University of Saskatchewan


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ireland: Northern region of ROI

ncbi_isolation_source: fecal material

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_organism_name: Mycobacterium sp. 5-140-3-1

ncbi_submitter: Gyeongsang National University


ncbi_isolate: 2 TCF1

ncbi_organism_name: Sedimenticola sp.

ncbi_strain_identifiers: 2 TCF1

ncbi_submitter: University of Vienna


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Washington

ncbi_isolation_source: environmental sponges

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: LNW


ncbi_country: Switzerland: Basel

ncbi_isolation_source: clinical sample

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_country: USA

ncbi_isolation_source: CANDO+P Bioreactor

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Northwestern University


ncbi_country: United Kingdom: Harpur Hill; Buxton

ncbi_isolation_source: alkaline sediment

ncbi_organism_name: Anaerobacillus isosaccharinicus

ncbi_submitter: University of Manchester


ncbi_country: Belgium

ncbi_isolation_source: Culture

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_country: USA: Livermore; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Sedimentibacter sp.

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp.


ncbi_country: India

ncbi_isolation_source: Urine sample from patient with Pyelonephritis

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Hyderabad


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: France: Normandy

ncbi_isolation_source: Stools

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1233

ncbi_submitter: Broad Institute


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Institute of Microbiology


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: Atlantic Ocean: Bermuda Atlantic Time Series BATS

ncbi_isolation_source: seawater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Exeter


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Morganella morganii

ncbi_strain_identifiers: Jiangxi

ncbi_submitter: Jiangxi Fisheries Research Institute


ncbi_country: Belgium: Merelbeke

ncbi_organism_name: Curtobacterium citreum

ncbi_submitter: Institute for Agricultural, Fisheries and Food Research (ILVO)


ncbi_isolation_source: Water in bus air conditioner

ncbi_organism_name: Legionella quinlivanii

ncbi_submitter: Tel Aviv University


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: environmental

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Pakistan:Lasbella; Sonmiani; Miani Hor

ncbi_organism_name: Pseudarthrobacter sp. NCCP-2145

ncbi_submitter: National Agricultural Research Centre (NARC), Islamabad


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: Germany

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Gilliamella sp.

ncbi_submitter: EMG


ncbi_country: Brazil

ncbi_isolation_source: Homemade Mayonnaise

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Sphingobacterium sp. UBA7249

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Velamenicoccus archaeovorus

ncbi_submitter: Brazilian Center for Research in Energy and Materials CNPEM

ncbi_taxonomy: d__Bacteria;p__Candidatus Omnitrophota;c__;o__;f__;g__Candidatus Velamenicoccus;s__Candidatus Velamenicoccus archaeovorus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;g__Candidatus Velamenicoccus;s__Candidatus Velamenicoccus archaeovorus


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Utah

ncbi_isolation_source: blood stream

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Intermountain Healthcare


ncbi_country: Mexico: Comarca Lagunera

ncbi_isolation_source: milk sample

ncbi_submitter: universitair medish centrum groningen


ncbi_country: South Korea: Guam-dong; Yuseong-gu; Daejeon

ncbi_isolation_source: soil

ncbi_organism_name: Pseudarthrobacter sp. GA104

ncbi_submitter: Chungnam National University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: mouse gut metagenome


ncbi_country: Nigeria

ncbi_isolation_source: Clinical wounds

ncbi_organism_name: Escherichia coli

ncbi_submitter: Igbinedion University Okada


ncbi_isolation_source: Caecum


ncbi_organism_name: Citrobacter braakii

ncbi_strain_identifiers: Ngtc RS 20

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: pig gut metagenome


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Anaerococcus vaginalis

ncbi_submitter: US Food and Drug Administration


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Ahrensia sp.

ncbi_submitter: Handley Lab, University of Auckland


ncbi_assembly_name: Unknown Betaproteobacterium AM_1003

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Universidade Federal de Sao Carlos - UFSCar


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Freie Universitaet Berlin


ncbi_organism_name: uncultured Elusimicrobium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond E1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of Montreal


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Conexibacter stalactiti

ncbi_submitter: Institute of Medicinal Biotechnology


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Toho University


ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus xylosus


ncbi_country: Spain: Asturias

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_submitter: Universidad de Leon (Spain)


ncbi_submitter: Max Planck Institute for Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: EPFL


ncbi_country: China: Sichuan

ncbi_isolation_source: fly from chicken farm

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sichuan University


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Streptomyces sp. NPDC017529

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: Urine


ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: traditional Serbian cheese

ncbi_submitter: university of ljubljana, biotechnical faculty


ncbi_country: USA: Ingham County; MI

ncbi_isolation_source: Lansing Lake

ncbi_organism_name: Microcystis aeruginosa LG13-11

ncbi_submitter: University of Michigan


ncbi_country: India: Assam; Guwahati

ncbi_isolation_source: Rectal swab

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA3824

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA3824


ncbi_isolate: RdSym

ncbi_strain_identifiers: RdSym

ncbi_submitter: Symbiotic Evolution and Biological Functions Research Group, Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__unclassified Flavobacteriales;s__Flavobacteriales endosymbiont of Rhyzopertha dominica


ncbi_organism_name: Methylocystaceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: Portugal: Lagoa dos Salgados; Albufeira

ncbi_isolation_source: water sample

ncbi_organism_name: Cyanobacterium stanieri LEGE 03274

ncbi_submitter: CIIMAR


ncbi_submitter: Tongji University


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Piscinibacter sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Argentina

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus DAR5867

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: BEI Resources


ncbi_country: Israel

ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_country: China: Shangyu City; Zhejiang Province

ncbi_isolation_source: paddy soil

ncbi_organism_name: Paracoccus sp. SY

ncbi_strain_identifiers: SY

ncbi_submitter: Nanjing Agricultrure University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. SY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: Dysosmobacter welbionis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Functional Genomics Lyon (IGFL)


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_country: Pacific Ocean:Off Shimokita Peninsula

ncbi_isolation_source: marine sediment

ncbi_organism_name: Aggregatilinea lenta

ncbi_submitter: aqua and soil environmental laboratory, Energy and Environment Science, Nagaoka University of Technology


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter calcoaceticus

ncbi_submitter: University of Technology Sydney


ncbi_country: Sri Lanka: Colombo

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B;x__Salmonella enterica subsp. enterica serovar Java


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: Brown University


ncbi_country: Brazil: Piaui

ncbi_isolation_source: brain

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Londrina State University


ncbi_country: China: Nanchang; Poyang Lake

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_isolation_source: enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis priestleyi ANA and associated heterotrophs

ncbi_organism_name: Rhodobacteraceae bacterium HLUCCA08

ncbi_submitter: Pacific Northwest National Laboratroy


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Geminicoccaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Canada: Lacombe

ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Zhejiang University


ncbi_assembly_name: freshwater MAG --- VK4_bin-0766

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: University of Montreal


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with retrograde maize

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: metagenome

ncbi_organism_name: Ornithinibacillus sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: Marine

ncbi_strain_identifiers: ATCC 7744

ncbi_submitter: UCSI University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Aliivibrio;s__Aliivibrio fischeri;x__Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Microbacterium sp.


ncbi_country: Italy

ncbi_isolation_source: food

ncbi_organism_name: Yersinia intermedia

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_organism_name: Gemmatimonadales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: quesadilla with chicken

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Streptomyces sp. NPDC059456

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli


ncbi_organism_name: Cupriavidus oxalaticus

ncbi_submitter: University of Turku


ncbi_organism_name: Anderseniella sp.

ncbi_submitter: University of Southern California


ncbi_assembly_name: Genome Assembly for Pedobacter borealis DSM19626

ncbi_country: USA: Western Montana

ncbi_isolation_source: Forest soil

ncbi_organism_name: Pedobacter borealis DSM 19626

ncbi_submitter: GCAT-SEEK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter;s__Pedobacter borealis;x__Pedobacter borealis DSM 19626


ncbi_organism_name: Lachnoclostridium sp. UBA7482


ncbi_organism_name: Bacillus sp. ILBB4

ncbi_submitter: INIA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. ILBB4


ncbi_organism_name: Nostoc sp. RF31YmG

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Solibacillus sp. FSL H8-0538

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Solibacillus;x__unclassified Solibacillus;s__Solibacillus sp. FSL H8-0538


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bergeyella cardium


ncbi_organism_name: Microcoleus sp. N9_A3

ncbi_submitter: Palacky University Olomouc


ncbi_assembly_name: Rumen uncultured genome RUG12924

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Arthrobacter sp. PL16

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptomyces rubiginosohelvolus


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Stenotrophomonas acidaminiphila

ncbi_strain_identifiers: ST

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_organism_name: Enterococcus sp. DIV0125

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Southampton


ncbi_organism_name: Schleiferilactobacillus harbinensis

ncbi_submitter: Teagasc


ncbi_organism_name: Pseudomonas sp. NPDC090203

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella sp. 2020_352

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_submitter: University of California San Diego


ncbi_organism_name: Pontixanthobacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Synergistota bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Johns Hopkins Applied Physics Lab


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: College of Resources and Environmental science


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: chu de bordeaux


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Subdoligranulum sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Northeast Forestry University


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Carnobacterium divergens

ncbi_submitter: SC


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Fibrobacteraceae bacterium


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_organism_name: Aliiroseovarius marinus

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Aestuariivirga sp.

ncbi_submitter: Rutgers University


ncbi_organism_name: uncultured Saccharicrinis sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Taiwan

ncbi_isolation_source: plant tissue

ncbi_organism_name: Xylella taiwanensis

ncbi_submitter: Academia Sinica


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universidade Federal de Vicosa


ncbi_organism_name: Prevotella sp.

ncbi_submitter: AAFC


ncbi_country: Saudi Arabia: KAUST

ncbi_isolation_source: anammox marine column reactor biofilm on non-woven sheet

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: KAUST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-5145

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Gallionellaceae bacterium

ncbi_submitter: BILS


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: University of Oslo


ncbi_country: Switzerland

ncbi_isolation_source: carcasses

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_country: Bangladesh

ncbi_isolation_source: Mastitis milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Bangladesh Agricultural University


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Elusimicrobiales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Helicobacter rodentium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Xanthomonas arboricola

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Cambodia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Egypt: Giza

ncbi_isolation_source: fecal isolate from poultry farm worker

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bern


ncbi_country: Australia: Adelaide

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli 95NR1

ncbi_submitter: University of Adelaide


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella quasipneumoniae


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Korea

ncbi_isolation_source: saltern of West Sea

ncbi_organism_name: Priestia filamentosa

ncbi_submitter: KRIBB


ncbi_organism_name: Azotosporobacter soli

ncbi_submitter: Fujian Agriculture And Forestry University


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: EMG


ncbi_country: Brazil

ncbi_isolation_source: oral cavity; infant (13 months of age)

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: State University of Campinas


ncbi_organism_name: uncultured Olsenella sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: 5 bed bar

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital of Southern University of Science and Technology


ncbi_country: China

ncbi_isolation_source: pork

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Phocaeicola sp.


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Opitutaceae bacterium UBA2422

ncbi_submitter: University of Queensland


ncbi_isolation_source: skin

ncbi_organism_name: Corynebacterium amycolatum

ncbi_submitter: COSMAX BTI


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Neisseriaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Nocardia cyriacigeorgica

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Bryobacterales bacterium


ncbi_country: Panama: Bocas del Toro; Punta Caracol

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Thermacetogenium phaeum

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_country: Malaysia

ncbi_isolation_source: closed biodigester

ncbi_organism_name: Eubacteriaceae bacterium UBA1433


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: ADCOB

ncbi_organism_name: Cobetia marina

ncbi_submitter: Unversidad de Valparaiso


ncbi_country: Venezuela

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: Soochow University


ncbi_isolation_source: Retail raw chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Seoul National University


ncbi_organism_name: Kitasatospora sp. NPDC097605

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Vampirovibrionia bacterium

ncbi_submitter: Iowa State University


ncbi_country: Sweden: Bothnian Sea

ncbi_isolation_source: Bothnian Sea site NB8 sediments 37-42 cm depth; used to inoculate methane- and iron-fed bioreactor (T0); bioreactor biomass 16 months after reactor inoculation (T1); and 29 months after reactor inoculation (T2)

ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: Radboud University Nijmegen


ncbi_assembly_name: freshwater MAG --- Loc081215-8m_bin-0062

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Vienna


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: skin lesion

ncbi_organism_name: Streptococcus didelphis

ncbi_submitter: Universidade Federal do Rio Grande do Sul


ncbi_country: United Kingdom: London

ncbi_submitter: University of Bath


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Texas

ncbi_organism_name: Chromobacterium alkanivorans

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: cookies

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nankai Universigy


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_isolation_source: Intestine

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Canada: Quebec

ncbi_organism_name: Aerococcaceae bacterium NML191292

ncbi_submitter: National Microbiology Laboratory, Public Health Agency of Canada


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem