ncbi_country: China: Gansu

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Disease Control and Prevention of Chinese PLA


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_assembly_name: freshwater MAG --- AM-2014_bin-1795

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: BILS


ncbi_country: China

ncbi_isolation_source: ascites

ncbi_submitter: West China Secone University Hospital, Sichuan University


ncbi_country: Brazil

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Xiamen University


ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;x__pseudomallei group;s__Burkholderia pseudomallei;x__Burkholderia pseudomallei NCTC 13392;x__Burkholderia pseudomallei str. NCTC 13392 substr. morphotype_2


ncbi_organism_name: Sphingobium abikonense

ncbi_submitter: Tang lab


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_country: Burkina Faso: Toulfe

ncbi_isolation_source: Maari

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Copenhagen


gtdb_type_species_of_genus: t

ncbi_organism_name: Stappia stellulata DSM 5886

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: Post-op wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Nimes University Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Farm workers

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Absconditibacteriota;o__Candidatus Absconditabacterales;x__unclassified Candidatus Absconditabacterales;s__Candidatus Absconditabacterales bacterium


ncbi_submitter: Instituto Adolfo Lutz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Prevotella histicola


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: United Kingdom: Herefordshire

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: Nigeria

ncbi_isolation_source: N/C

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_submitter: University of Exeter


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Stockholm University


ncbi_assembly_level: Complete Genome

ncbi_country: Egypt: Alexandria

ncbi_isolation_source: aspirated pus

ncbi_submitter: Leibniz Institute of Photonic Technology (IPHT)


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: India

ncbi_isolation_source: saline alkaline muddy soil

ncbi_organism_name: Saccharomonospora saliphila YIM 90502

ncbi_submitter: JGI


ncbi_country: USA: TX

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: India: Kanyakumari; Tamil nadu

ncbi_isolation_source: endolithic sand sample

ncbi_organism_name: Neoroseomonas marina

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Federal University of Minas Gerais


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing agticultural university


ncbi_organism_name: Candidatus Blautia merdavium

ncbi_submitter: Quadram Institutte


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institute of Chemistry, National Autonomous University of Mexico (UNAM)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Citrobacter cronae

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_country: Japan

ncbi_submitter: Toho University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_country: Austria

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: France

ncbi_isolation_source: fresh water

ncbi_organism_name: Dickeya undicola

ncbi_submitter: Sorbonne University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Medicines Directorate


ncbi_isolation_source: sputum

ncbi_submitter: SC


ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: Tang lab


ncbi_assembly_name: IMG-taxon 2600255304 annotated assembly

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Megasphaera sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Scardovia wiggsiae F0424

ncbi_submitter: Broad Institute


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: France: Brest

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Burkholderiales bacterium 24-55-52


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: feces


ncbi_isolation_source: ground turkey

ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Candidatus Babelota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;x__unclassified Candidatus Babelota;s__Candidatus Babelota bacterium


ncbi_isolate: S24 bin 12

ncbi_organism_name: Nostoc sp.

ncbi_strain_identifiers: S24 bin 12

ncbi_submitter: Duke University


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: pork

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Texas A&M University


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Aeromonas enteropelogenes

ncbi_submitter: University of Maryland, School of Medicine


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Paenibacillus sp. FSL K6-0108

ncbi_submitter: Penn State


ncbi_organism_name: Bartonella bacilliformis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Daping Hospital, The Army Medical University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_submitter: University of Oxford


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Streptomyces sp. NPDC012829

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: GuiZhou University


ncbi_organism_name: Silanimonas sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universiti Putra Malaysia


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Dongduk Women's University


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Copenhagen


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Metamycoplasmataceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: AR

ncbi_isolation_source: soil

ncbi_organism_name: Listeria innocua

ncbi_submitter: Cornell University


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Aquabacterium sp.

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__unclassified Aquabacterium;s__Aquabacterium sp.


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Spirochaetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;x__environmental samples;s__uncultured Spirochaetota bacterium


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: mouse gut metagenome


ncbi_country: Russia: Crimea; Lake Sivash

ncbi_isolation_source: cyanobacterial mat

ncbi_organism_name: Lamprobacter modestohalophilus

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_country: China: Dexing Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: Nasopharyngeal swab

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Enterococcus hirae


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium longum;sb__Bifidobacterium longum subsp. longum;x__Bifidobacterium longum subsp. longum 1-6B


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_submitter: University of Galway


ncbi_country: South Korea

ncbi_isolation_source: pig slaughterhouse drain

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Mesorhizobium sp. LNHC252B00

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: uncultured Roseateles sp.


ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: France: Paris

ncbi_isolation_source: Perineum swab

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup


ncbi_country: North Sea: German Bight (Helgoland Mud Area)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Bremen


ncbi_country: Norway

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus haemolyticus


ncbi_isolation_source: food

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Institut Pasteur


ncbi_country: Denmark

ncbi_isolation_source: Hospital Infection (undetermined)

ncbi_organism_name: Enterococcus faecalis EnGen0061

ncbi_submitter: Broad Institute


ncbi_country: Antarctica: Fumarole Bay; Deception Island

ncbi_isolation_source: sediment

ncbi_organism_name: Anoxybacillus sp. LAT27

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_country: Japan

ncbi_isolation_source: Hospital sewage

ncbi_organism_name: Serratia nevei

ncbi_submitter: Tokyo Medical and Dental University


ncbi_country: Italy

ncbi_isolation_source: roe deer

ncbi_submitter: FDA


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Auburn University


ncbi_country: Australia: Melbourne

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled pig faecal samples collected from floor of farm

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: The REHAB Consortium


ncbi_country: USA: Kentucky

ncbi_organism_name: Prescottella equi

ncbi_submitter: The Roslin Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_country: Pacific Ocean: Chile-Peru Current Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Tara Oceans Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: Oenococcus oeni

ncbi_submitter: UMR oenologie


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: Singapore

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Legionellales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Providencia manganoxydans

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Syntrophales bacterium


ncbi_organism_name: Cardinium endosymbiont of Tipula unca

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Amoebophilaceae;g__Candidatus Cardinium;x__unclassified Candidatus Cardinium;s__Cardinium endosymbiont of Tipula unca


ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Virchow;x__Salmonella enterica subsp. enterica serovar Virchow str. ATCC 51955


ncbi_isolation_source: aquarium sea water

ncbi_organism_name: Photobacterium damselae

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_isolation_source: human gut

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: wastewater treatment plant effluent

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: bacterium


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Ureaplasma parvum

ncbi_submitter: EMG


ncbi_country: USA: NE

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_strain_identifiers: Gar CS 16

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_isolate: TJRUQ

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Ghana:Kassena Nankana District

ncbi_isolation_source: pharynx

ncbi_organism_name: Neisseria meningitidis


ncbi_country: China: Jiangxi

ncbi_isolation_source: tungsten sand tailings

ncbi_organism_name: Methylobacterium nonmethylotrophicum

ncbi_submitter: Guangdong Microbial Culture Collection Center (GDMCC), Guangdong Institute of Microbiology


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Ghana

ncbi_isolation_source: Hospital wastewater

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Tokyo Medical and Dental University


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Myxococcaceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: Canada: North Alberta

ncbi_isolation_source: Suncor tailing pond sample

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium UBA4773


ncbi_country: China

ncbi_isolation_source: food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany: Neumuenster

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Bundeswehr Insitute of Microbiology


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: Univeristy of Aberdeen


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sheffield


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: India: Jetpur; Gujarat

ncbi_isolation_source: Textile industry effluent

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Republic of the Congo: Pointe-Noire

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_organism_name: Helicobacter pylori BM012S

ncbi_submitter: Pennsylvania State University


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter rodentium


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Prevotella bivia

ncbi_submitter: Loyola University Chicago


ncbi_country: Ghana: Northern region

ncbi_isolation_source: nasal swab

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Noguchi Memorial Institute fir Medical Research


ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Peru:Chota; San Juan de Licupis; Los Porongos

ncbi_organism_name: Yersinia pestis PY-01

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Pseudomonas fulva


ncbi_country: USA

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: UC San Diego


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: China: Shandong

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Parvularculaceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Shinshu University Graduate School of Medicine, Science and Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_country: Australia: Sydney

ncbi_submitter: OUTBREAK


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: BiOSSE


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Staskawicziibacteriota;s__Candidatus Staskawiczbacteria bacterium RIFOXYB1_FULL_32_11


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-2906

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: stool sample

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Belgium

ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Pseudomonas yamanorum

ncbi_submitter: Wageningen University & Research


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Milan

ncbi_isolation_source: Prosthesis knee

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: IRCCS Ospedale Galeazzi - Sant'Ambrogio


ncbi_organism_name: Acinetobacter baumannii 730795

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Sweden

ncbi_isolation_source: prostatic tissue

ncbi_submitter: Aarhus University


ncbi_country: USA: Texas

ncbi_isolation_source: laboratory

ncbi_organism_name: Nocardia nova

ncbi_submitter: Rice University


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Melioribacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: the seqafrica consortium


ncbi_assembly_name: IMG-taxon 2654588181 annotated assembly

ncbi_organism_name: Shigella sonnei

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured beta proteobacterium


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: PA

ncbi_isolation_source: intestine mouse

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Yersinia mollaretii

ncbi_submitter: INSTITUT PASTEUR


ncbi_assembly_name: Rumen uncultured genome RUG12019

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Turkey

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Tromatobia lineatoria


ncbi_organism_name: Arcobacter sp.

ncbi_submitter: Queen Mary University of London


ncbi_country: Ghana: Korle-Gonno Lake

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Ghana


ncbi_isolation_source: seawater

ncbi_organism_name: Bowmanella dokdonensis

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: South Carolina

ncbi_isolation_source: estuary

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Active Teaching NextGenSequencing Group (GCAT-SEEK)


ncbi_organism_name: Rhodanobacter ginsenosidimutans

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Northeastern University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Odoribacter splanchnicus


ncbi_organism_name: Paenibacillus cellulositrophicus

ncbi_submitter: College of Resources and Environmental science


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Glaciecola sp.

ncbi_submitter: EMG


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Paludibacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_country: Germany

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: United Kingdom

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Swansea University


ncbi_organism_name: Vibrio navarrensis

ncbi_submitter: Walailak University


ncbi_country: Antarctica

ncbi_isolation_source: subglacial sediment

ncbi_organism_name: Acidipila sp.

ncbi_submitter: Institute of Oceanography, Shanghai Jiao Tong University, China


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis


ncbi_country: USA

ncbi_organism_name: Enterococcus innesii

ncbi_submitter: Icahn School of Medicine


ncbi_assembly_level: Chromosome

ncbi_isolate: Beta

ncbi_isolation_source: clinical

ncbi_organism_name: Pseudomonas aeruginosa PA14

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodospirillales;f__Novispirillaceae;g__Novispirillum;s__Novispirillum itersonii;sb__Novispirillum itersonii subsp. itersonii;x__Novispirillum itersonii subsp. itersonii ATCC 12639


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad de Concepcion


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: Northwestern University


ncbi_country: China: Banpo; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Treponema sp.

ncbi_submitter: South china normal university


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester - thermal hydrolysis pre-treatment sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Shandong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_organism_name: Streptomyces bacillaris

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Guangxi; Dashan

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: KI_Gwil_MAG_1.0 Balneola_sp RCC3390_11c

ncbi_organism_name: Balneola sp.

ncbi_submitter: Nomorfilm


ncbi_organism_name: uncultured Gaiellaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_organism_name: Enterococcus sp. AZ050

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Pseudoduganella sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides sp.


ncbi_organism_name: Novilysobacter viscosus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured cyanobacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Jyvaskyla


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: addis ababa university


ncbi_country: USA: MT

ncbi_organism_name: Listeria immobilis

ncbi_submitter: Cornell University


ncbi_country: USA: IA

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UNC Chapel Hill


ncbi_submitter: WRAIR-Africa


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: University of Chicago


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Colorado

ncbi_organism_name: Amycolatopsis coloradensis

ncbi_submitter: Institute of Microbial Technology


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: University College Cork


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Yonsei University


ncbi_country: USA: TX

ncbi_isolation_source: avian liver (Gallus gallus domesticus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Legionellales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Netherlands: Bilthoven

ncbi_isolation_source: unavailable

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: RIVM


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;x__unclassified Candidatus Margulisiibacteriota;s__Candidatus Margulisiibacteriota bacterium


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Tateyamaria sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Serbia: Futog

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Thermoflexales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: United Kingdom: Scotland; Queen Elizabeth University Hospital Glasgow

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Aberdeen


ncbi_country: Morocco

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_isolation_source: Intestine

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Inha University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium OF27-8pH10A

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: China: Shanghai

ncbi_submitter: Huashan hospital


ncbi_isolation_source: chicken breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 20037


ncbi_country: Belize: Carrie Bow Cay Field Station

ncbi_isolation_source: coral mucus

ncbi_organism_name: Lentisphaeria bacterium UBA2565

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__unclassified Lentisphaeria;s__Lentisphaeria bacterium UBA2565


ncbi_isolation_source: Mariane sediment


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: India: Vellore

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: Christian Medical College


ncbi_country: Canada

ncbi_isolation_source: environmental watersal

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_country: Viet Nam

ncbi_isolation_source: food

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Vietnam-Russia Tropical Center


ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Seoul National University


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: United Kingdom: York

ncbi_isolation_source: Independently evolved isolated clone of PA01 co-cultured with S. maltophilia 4 g/ml treated Synthetic Cystic Fibrosis Media for 24 days

ncbi_submitter: University of Warwick


ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Animal Quarantine Service, MAFF

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Sedimentibacter sp.

ncbi_submitter: Lomonosov Moscow State University, Faculty of Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp.


ncbi_country: Finland: Olkiluoto

ncbi_isolate: bin S2.15

ncbi_isolation_source: groundwater

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_strain_identifiers: bin S2.15

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)


ncbi_organism_name: uncultured Rothia sp.

ncbi_submitter: EMG


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: Pseudonocardiales bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Streptococcus ferus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Kyoto University


ncbi_country: Germany

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 169 - depth 100m

ncbi_organism_name: Nocardioides sp. REDSEA-S37_B12

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_country: United Kingdom:Midlands

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 481


ncbi_country: Russia


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: feces

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: USA: Flathead Lake; MT

ncbi_isolation_source: lake water; MPn+N+C amendment

ncbi_organism_name: Acidovorax sp.

ncbi_submitter: University of Montana


ncbi_country: USA

ncbi_isolation_source: Harvest hide sponge

ncbi_submitter: US Meat Animal Research Center


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Pseudomonas sp. CFBP13506

ncbi_submitter: INRA


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides salyersiae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_isolation_source: sludge from anaerobic membrane bioreactor

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Shantou University, China


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Zoogloeaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: Genoscope CEA


ncbi_country: USA: Ohio

ncbi_submitter: JCVI


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_organism_name: uncultured Eisenbergiella sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Peptoniphilus sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_organism_name: uncultured Balneolaceae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;x__environmental samples;s__uncultured Balneolaceae bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: NC

ncbi_isolation_source: spleen

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Guangxi Universtiy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Microbacterium laevaniformans

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Bacteroidales bacterium UBA1735

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1735


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Australia: Sydney; NSW

ncbi_isolation_source: feces

ncbi_organism_name: Cloacibacillus sp.


ncbi_country: Russia: Elista

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Russia Research Anti-Plague Institute "Microbe"


ncbi_country: Denmark: Mariagerfjord

ncbi_isolation_source: activated sludge from Mari_18-Q3-R65-66

ncbi_organism_name: Candidatus Rhodoferax mariagerensis

ncbi_submitter: Aalborg University


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: beef

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nankai University


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Clostridium sp. OM04-12AA

ncbi_submitter: BGI


ncbi_isolation_source: humic Soil

ncbi_organism_name: Microbacterium arborescens

ncbi_submitter: Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences


ncbi_isolation_source: plant

ncbi_organism_name: Rathayibacter sp. VKM Ac-2857

ncbi_strain_identifiers: VKM Ac-2857

ncbi_submitter: PSCBR RAS G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Denmark

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: Grønt Udviklings- og Demonstrationsprogram (GUDP)


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolate: SPRUCE 159

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_strain_identifiers: SPRUCE 159

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Brazil

ncbi_isolation_source: sea water

ncbi_organism_name: Yersinia intermedia

ncbi_submitter: SC


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Candidatus Palauibacter australiensis

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy: d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;f__Candidatus Palauibacteraceae;g__Candidatus Palauibacter;s__Candidatus Palauibacter australiensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;f__Candidatus Palauibacteraceae;g__Candidatus Palauibacter;s__Candidatus Palauibacter australiensis


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Kenya Medical Research Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: WTSI


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Lamprocystis purpurea DSM 4197

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Xinjiang

ncbi_isolation_source: abortions

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Chinese Animal Health and Epidemiology Center


ncbi_country: China:Inner Mongolia

ncbi_isolation_source: Normal medium

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: China

ncbi_isolation_source: Bronchoalveolar lavage fluid

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: uncultured Adlercreutzia sp.


ncbi_country: USA

ncbi_isolation_source: blood from a renal care patient

ncbi_organism_name: Vreelandella stevensii S18214

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_country: France

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universite Paris Sud


ncbi_country: Viet Nam

ncbi_isolation_source: Slaughterhouse

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Antwerpen


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Inserm


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. S06B 330

ncbi_submitter: Bowling Green State University


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: nasopharynx


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: University of California Davis


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: Dahi fermented milk product

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Quaid-I-Azam University


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWB1_42_6


ncbi_organism_name: Methylorubrum extorquens

ncbi_submitter: Genoscope CEA


ncbi_organism_name: Aquimarina sp. SS2-1

ncbi_submitter: Chung-Ang university


ncbi_country: China: Shanghai

ncbi_isolation_source: feces

ncbi_submitter: Shanghai East Hospital


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Belgium

ncbi_isolation_source: Wheat rhizosphere

ncbi_organism_name: Pseudomonas tensinigenes

ncbi_submitter: KU Leuven


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_isolation_source: gut content

ncbi_organism_name: Hungatella effluvii

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Germany: Freising

ncbi_isolation_source: Caecal content

ncbi_organism_name: Limosilactobacillus reuteri


ncbi_isolation_source: pickle

ncbi_organism_name: Loigolactobacillus zhaoyuanensis

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universita' degli Studi di Milano


ncbi_country: USA: Seattle

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_organism_name: Giesbergeria sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Switzerland

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_country: Croatia

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Aberdeen


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Neisseriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yanofskyibacteriota;s__Candidatus Yanofskybacteria bacterium RIFCSPLOWO2_01_FULL_45_72


ncbi_assembly_name: IMG-taxon 2667527447 annotated assembly

ncbi_organism_name: Aequorivita viscosa

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: ETH Zurich


ncbi_strain_identifiers: OSS 668

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oslo


ncbi_isolation_source: chicken breast

ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


ncbi_country: China: Chongqing

ncbi_isolation_source: Cooling tower water

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_organism_name: Bordetella bronchiseptica

ncbi_submitter: SC


ncbi_organism_name: Brucella suis

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d'Aosta


ncbi_organism_name: Carnobacterium divergens

ncbi_submitter: AgResearch


ncbi_organism_name: Bacillus anthracis

ncbi_strain_identifiers: Bx Uniclon 03

ncbi_submitter: UFMG


ncbi_country: Czech Republic

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CEITEC VFU


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Jinan University


ncbi_submitter: China-Japan Friendship Hospital


ncbi_assembly_name: Rumen uncultured genome RUG12055

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Malaysia

ncbi_isolation_source: soil

ncbi_organism_name: Leptospira congkakensis

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_organism_name: Rhodococcus zopfii

ncbi_submitter: The University of Hong Kong


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_submitter: IMR


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of West London


ncbi_country: Venezuela: Caracas

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: South Africa: King George V Hospital; Durban

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0029

ncbi_submitter: Broad Institute


ncbi_organism_name: Catenibacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: China: XinJiang

ncbi_organism_name: Oceanobacillus salinisoli

ncbi_submitter: Yunnan institute of microbiology


ncbi_organism_name: Nocardiopsis flavescens

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Spain

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universite Laval


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Microlunatus spumicola

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Xanthomonas euvesicatoria pv. euvesicatoria

ncbi_submitter: Kasetsart University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: Newcastle

ncbi_organism_name: Agathobacter sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_country: USA

ncbi_organism_name: Staphylococcus warneri

ncbi_strain_identifiers: ADPVE

ncbi_submitter: NISC - NIH Intramural Sequencing Center


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Alistipes avicola

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: BUAP


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Malawi

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2724679819 annotated assembly

ncbi_organism_name: Laceyella tengchongensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


ncbi_country: Ghana: Tamale

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Campylobacter sp. 113

ncbi_submitter: University of California at Davis


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: BGI


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Jiangnan University


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Selenomonas sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: sub-seafloor sulfide deposits

ncbi_organism_name: bacterium BMS3Abin14

ncbi_submitter: JAMSTEC


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacillus smithii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: chu de bordeaux


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: SRCAMB


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Chinese center for disease control and prevention


ncbi_organism_name: Pseudomonas sp. DC418

ncbi_submitter: University of Florida


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: 2nd Faculty of Medicine of Charles University and Motol University Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Streptomyces luteogriseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Kyorin University Faculty of Medicine


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter sp. GZD-224

ncbi_submitter: Jilin Agricultural University


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_organism_name: bacterium


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Universite Laval


ncbi_country: USA: CA

ncbi_isolation_source: onion waste

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Phenylobacterium sp.


ncbi_organism_name: uncultured Coxiellaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: EMG


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;x__unclassified Microgenomates group;s__Microgenomates group bacterium GW2011_GWC1_37_12b


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Lysinibacillus fusiformis


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus F16533

ncbi_submitter: Broad Institute


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. MPR-R2A5

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: India

ncbi_organism_name: Brucella abortus 85/69


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: APRR-p

ncbi_submitter: South China Agricultural University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolate: Urine

ncbi_strain_identifiers: STp 7;Oneg:H12;STw 23;NILS40:C;Urine

ncbi_submitter: UMR 1137 IAME


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas kermanshahensis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Sutterella sp.


ncbi_isolation_source: stool sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Research and Innovation Agency


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Peru

ncbi_isolation_source: stool

ncbi_submitter: USUHS


ncbi_submitter: Sun Yat-sen University


ncbi_submitter: Shandong University


ncbi_country: France: Bordeaux

ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Institut Pasteur Montevideo


ncbi_country: Brazil

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas citri pv. anacardii

ncbi_submitter: CAPES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. anacardii


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: Wales; Aberystwyth

ncbi_organism_name: Myxococcus eversor

ncbi_submitter: Aberystwyth University


ncbi_organism_name: Clostridium sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli 2-474-04_S3_C1

ncbi_submitter: IGS


ncbi_isolation_source: human blood

ncbi_submitter: Yang-Ming Genome Sequencing Center, National Yang-Ming University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gallolyticus;sb__Streptococcus gallolyticus subsp. gallolyticus;x__Streptococcus gallolyticus subsp. gallolyticus ATCC 43143


ncbi_assembly_name: IMG-taxon 2636416074 annotated assembly

ncbi_organism_name: Salimicrobium halophilum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: USA: Georgia

ncbi_isolate: TRS

ncbi_organism_name: Wolbachia endosymbiont of Brugia malayi

ncbi_strain_identifiers: TRS

ncbi_submitter: New England Biolabs


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Justus-Liebig-University Giessen


ncbi_country: USA

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Yongping Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: EMG


ncbi_country: Japan: Horonobe URL

ncbi_organism_name: Firmicutes bacterium HGW-Firmicutes-4

ncbi_submitter: UC Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium HGW-Firmicutes-4


ncbi_organism_name: Escherichia coli

ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_country: China: Huangshi; Hubei

ncbi_isolation_source: soil sample

ncbi_organism_name: Pseudomonas benzopyrenica

ncbi_submitter: Wuhan University


ncbi_country: Canada: High River

ncbi_isolation_source: Cattle feces

ncbi_submitter: LETHBRIDGE RESEARCH CENTRE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: respiratory

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Peking Union Medical College Hospital


ncbi_isolation_source: cold seep

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: USA: Wisconsin

ncbi_isolation_source: nasal lavage

ncbi_organism_name: Corynebacterium genitalium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_assembly_name: freshwater MAG --- MJ120924B_bin-036

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: UNIVERSITY OF FREIBURG MEDICAL CENTER


ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Epidemic materials

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Yangzhou University


ncbi_isolation_source: Coastal Water

ncbi_organism_name: Acinetobacter sp. FL51

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_organism_name: Culicoidibacterales bacterium

ncbi_submitter: Sichuan University


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ruminococcus sp. AM36-2AA

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Ochrobactrum sp. AN78

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: Kiel University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC058198

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD17614

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus 21251


ncbi_country: Antarctica: around Great Wall Station

ncbi_isolation_source: sediment

ncbi_organism_name: Paeniglutamicibacter terrestris

ncbi_submitter: Chulalongkorn university


ncbi_organism_name: Streptomyces sp. NPDC004783


ncbi_organism_name: uncultured Dehalococcoidaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Charlottetown

ncbi_isolation_source: Market

ncbi_organism_name: Dickeya fangzhongdai

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_submitter: SurvCARE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Enterobacter mori

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ruminococcus albus 7 = DSM 20455

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus albus;x__Ruminococcus albus 7 = DSM 20455


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: China: WuHan

ncbi_isolation_source: anthropogenic

ncbi_organism_name: Salmonella enterica subsp. diarizonae

ncbi_submitter: Wuhan Polytechnic University


ncbi_country: Russia: Perm region

ncbi_isolation_source: Euphorbia virgata rhizosphere; oil-polluted soil

ncbi_organism_name: Rhodococcus sp. IEGM 1237

ncbi_strain_identifiers: IEGM 1237

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. IEGM 1237


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Mycobacterium tuberculosis MD18472


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: EMG


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Acaryochloris sp. IP29b_bin.137

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: NNKp 2284

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_organism_name: Timonella senegalensis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: freshwater MAG --- YR_bin-2325

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: USA: MI

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_isolation_source: human fecal sample

ncbi_organism_name: Lachnospiraceae bacterium 2_1_58FAA

ncbi_submitter: Broad Institute


ncbi_country: Austria

ncbi_isolation_source: food processing environment

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_country: Norway

ncbi_isolation_source: Rectal swab

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: Belgium: Antwerp

ncbi_isolation_source: Perineum swab

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: Yangzhou University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_submitter: GIHE(Gyeonggi-do Institute of Health & Environment)


ncbi_country: China: Xiamen; Fujian province

ncbi_isolation_source: offshore hot spring sediment

ncbi_organism_name: Thermophagus xiamenensis

ncbi_submitter: Key Laboratory of Marine Biogenetic Resources, Third Institute of Oceanography, State Oceanic Administration


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SurvCARE


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_isolation_source: Seto Island Sea

ncbi_organism_name: Sulfitobacter sp. M56

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol


ncbi_submitter: University of Michigan Medical School

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium intracellulare;sb__Mycobacterium intracellulare subsp. chimaera


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Amylibacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Tang lab


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_country: Spain

ncbi_isolation_source: Cultured Manila clams (Ruditapes philippinarum)

ncbi_organism_name: Vibrio gallaecicus

ncbi_strain_identifiers: CECT 7244

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Iowa

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: iowa state university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus saccharolyticus 30_1

ncbi_submitter: Broad Institute


ncbi_organism_name: Mycobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_isolation_source: Animal feed

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bergen;x__Salmonella enterica subsp. enterica serovar Bergen str. ST350


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;s__Candidatus Doudnabacteria bacterium RIFCSPLOWO2_12_FULL_49_8


ncbi_isolation_source: toenail; subungal debris

ncbi_organism_name: Pseudomonas aeruginosa BWHPSA004


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: healthy adult 3C

ncbi_organism_name: Verrucomicrobia bacterium CAG:312_58_20

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium CAG:312_58_20


ncbi_organism_name: Geodermatophilus bullaregiensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: South China Sea

ncbi_isolation_source: fluid

ncbi_organism_name: Methyloprofundus sp.

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: China: Shandong

ncbi_isolation_source: sputum

ncbi_submitter: The First Affiliated Hospital of Shandong First Medical University


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Spain: Asturias

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Portugal: Quinta do Bispo; Viseu

ncbi_isolation_source: sludge of an effluent treatment pond in an abandoned uranium mine

ncbi_organism_name: Pedobacter lusitanus

ncbi_submitter: University of Aveiro


ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Escherichia coli

ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_country: Switzerland

ncbi_isolation_source: feces

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: Italy

ncbi_isolation_source: Vaginal Swab

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Parma


ncbi_country: Belarus: Minsk

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: Northumbria University


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Maricaulis sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Pseudoflavonifractor sp. BIOML-A18

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Sichuan

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University


ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: SC


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: ice core

ncbi_organism_name: Cryobacterium sp. Y57

ncbi_submitter: Institute of Tibetan Plateau Research