ncbi_country: China: Shaanxi

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The Second Affiliated Hospital Zhejiang University School of Medicine


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: USA: Connecticut; Hamden

ncbi_genome_representation: full

ncbi_isolation_source: flower stigma

ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Connecticut Agricultural Experiment Station


ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Colon

ncbi_organism_name: Dubosiella newyorkensis


ncbi_country: India: Silagrant; Guwahati; Assam

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_country: India: Puttaparthi

ncbi_isolation_source: Midstream urine

ncbi_submitter: Sri Sathya Sai Institute of Higher Learning


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Brazil

ncbi_isolation_source: Mesenteric Lymph Node

ncbi_submitter: Sao Paulo State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


gtdb_representative: t

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Ewha Womans University Seoul Hospital


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Capital Institute of Pediatrics


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_submitter: Memorial Sloan Kettering Cancer Center


ncbi_organism_name: Dokdonella sp.

ncbi_submitter: Nanjing University


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: University of Regina


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Tepidimonas sp.

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Tepidimonas;x__unclassified Tepidimonas;s__Tepidimonas sp.


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__environmental samples;s__uncultured Candidatus Cloacimonadota bacterium


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Klebsiella quasipneumoniae


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University hospital Hamburg-Eppendorf


ncbi_organism_name: uncultured Terricaulis sp.


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Robert Koch Institute


ncbi_isolate: UTEX LB 1556

ncbi_organism_name: Heteroscytonema crispum UTEX LB 1556

ncbi_strain_identifiers: UTEX LB 1556

ncbi_submitter: National Biodefense Analysis and Countermeasures Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Heteroscytonemataceae;g__Heteroscytonema;s__Heteroscytonema crispum;x__Heteroscytonema crispum UTEX LB 1556


ncbi_organism_name: Cellvibrionaceae bacterium

ncbi_submitter: Japan Agency for Marine-Earth Science and technology (JAMSTEC)


ncbi_organism_name: Bacillus infantis

ncbi_submitter: Centro de Investigacion y de Estudios Avanzados del IPN - Unidad Irapuato


ncbi_organism_name: Peptoniphilus lacrimalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Laval University


ncbi_organism_name: Pseudomonas ogarae

ncbi_submitter: LMU Munich


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudoalteromonas sp. RW-H-Ap-1

ncbi_submitter: Chung-Ang university


ncbi_organism_name: uncultured Intrasporangiaceae bacterium


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: sea water [ENVO:00002149]

ncbi_organism_name: Lentimonas sp. CC10

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__Verrucomicrobiota incertae sedis;g__Lentimonas;x__unclassified Lentimonas;s__Lentimonas sp. CC10


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillales bacterium


ncbi_country: Japan: Chubu

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: uncultured bacterium


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 44467_4

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Pseudosulfitobacter pseudonitzschiae

ncbi_submitter: Shantou University


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: China:Changbai Mountain

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas fragi

ncbi_submitter: Jilin Agricultural University


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: Rumen uncultured genome RUG13329

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Ramlibacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: NY

ncbi_isolation_source: Eye

ncbi_organism_name: Staphylococcus aureus DAR1275

ncbi_submitter: Broad Institute


ncbi_country: Spain

ncbi_isolation_source: contaminated soil

ncbi_organism_name: Stutzerimonas kunmingensis

ncbi_submitter: University of Balearic Islands


ncbi_country: India

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: SC


ncbi_organism_name: Dyadobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptococcus infantis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Nimes University Hospital


ncbi_assembly_name: Rumen uncultured genome RUG12179

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Fimbriimonadales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: USA: Bothell; Washington

ncbi_organism_name: Streptomyces sp. wa22

ncbi_submitter: Cornell University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured bacterium


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Micrococcaceae bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Erwinia amylovora 01SFR-BO

ncbi_submitter: CeBiTec


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Bacteroides acidifaciens


ncbi_isolation_source: Lumen Transverse Colon

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: UNC-Chapel Hill


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Spirochaetaceae bacterium


ncbi_country: Iran

ncbi_isolation_source: nodules

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Florence


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Liaoning; Changhai; Dachangshan

ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: DLOU-Changhai

ncbi_submitter: Dalian Ocean University


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Japan

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: Yonsei University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sciensano


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Ardenticatenaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: South Korea

ncbi_isolation_source: black rice

ncbi_organism_name: Cronobacter dublinensis

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_organism_name: Bacillus sp. HSTU-bmb18

ncbi_submitter: Hajee Mohammad Danesh Science and Technology University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. HSTU-bmb18


ncbi_country: Mexico: San Juanito; Bocoyna Municipality; Chihuahua

ncbi_isolation_source: Gut

ncbi_organism_name: Rahnella sp. ChDrAdgB13

ncbi_submitter: Instituto Politecnico Nacional


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Italy: PA Bolzano

ncbi_organism_name: Escherichia coli

ncbi_submitter: Azienda Sanitaria dell'Alto Adige


ncbi_country: China

ncbi_isolation_source: maybe soil

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_submitter: University of Alberta


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: McMaster University


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-422-I02

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Thermoplasmata archaeon

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Candidatus Sumerlaeota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__unclassified Candidatus Sumerlaeota;s__Candidatus Sumerlaeota bacterium


ncbi_country: Turkey

ncbi_isolation_source: Hyalomma aegyptium

ncbi_organism_name: Borrelia turcica IST7

ncbi_refseq_category: reference genome

ncbi_submitter: Bavarian Health and Food Safety Authority

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: uncultured Oceanospirillaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae UHKPC48

ncbi_submitter: JCVI


ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Albert Einstein college of Medicine


ncbi_organism_name: Roseibium sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: TN

ncbi_isolation_source: Pork Chop

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: FDA


ncbi_isolation_source: feces

ncbi_organism_name: Shigella sp. FC6495

ncbi_submitter: Ministry of Science and Technology of China


ncbi_country: Brazil: Florianopolis

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Sphingomonas sp. 2378

ncbi_submitter: Empresa Brasileira de Pesquisa Agropecuaria


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Northwest University


ncbi_organism_name: Micromonospora taraxaci

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Pennsylvania; Pittsburgh

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_organism_name: Candidatus Competibacteraceae bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Candidatus Competibacteraceae bacterium


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 3.0 m mixolimnion layer of meromictic lake

ncbi_organism_name: Nonlabens sp.

ncbi_submitter: Academia Sinica


ncbi_country: South Korea: Kanunke Beach Bigeum

ncbi_isolation_source: Surface mud

ncbi_organism_name: Reichenbachiella agarivorans

ncbi_submitter: Korea research institute of Bioscience and Biotechnology


ncbi_assembly_name: Rumen uncultured genome RUG10611

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: NY

ncbi_isolation_source: feces goose

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Aquabacterium sp.

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__environmental samples;s__uncultured Aquabacterium sp.


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: Universite Laval


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: NNKp 2841

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_country: Canada: Ontario

ncbi_isolation_source: dairy cattle manure digester

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: JPIAMR ARMIS


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Nitratiruptor sp.

ncbi_submitter: Portland State University


ncbi_assembly_name: Rumen uncultured genome RUG10005

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: Fiber content from cow rumen

ncbi_organism_name: Propionibacterium ruminifibrarum

ncbi_submitter: WUR


ncbi_organism_name: Streptomyces sp. Tue6028

ncbi_submitter: BGI Research


ncbi_country: Argentina: Victoria

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Bacillus sp. (in: firmicutes)

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. (in: firmicutes)


ncbi_country: China: Wuhan

ncbi_isolation_source: sputum

ncbi_submitter: Zhongnan Hospital of Wuhan University


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: cloacal swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Henan Agricultural University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Parabacteroides faecavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: AsbDRAFT

ncbi_country: Antarctica: Scott Base; Ross Sea Region

ncbi_isolation_source: soil

ncbi_organism_name: Arthrobacter sp. 35/47

ncbi_submitter: University of Auckland


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Southampton


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EBI


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus PLAC6043

ncbi_submitter: Broad Institute


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Jiangnan University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;x__unclassified Microgenomates group;s__Microgenomates group bacterium GW2011_GWC1_46_15


ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Pseudomonas sp. HMSC072F09

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Sutterella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: Secreta

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of Antibiotics


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Mobiluncus mulieris

ncbi_submitter: EMG


gtdb_type_species_of_genus: t

ncbi_country: Switzerland

ncbi_organism_name: Mixta calida

ncbi_submitter: University of Zurich


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonetes bacterium ADurb.Bin211


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Enterococcaceae bacterium UBA6652

ncbi_submitter: University of Queensland


ncbi_country: Pakistan

ncbi_isolation_source: alcohol foam dispenser in hospital intensive care unit

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: China: Jiangsu

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Yangzhou University


ncbi_isolation_source: Freshwater lake

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_country: China: Jiaxing

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Jiaxing Center for Disease Control and Prevention


ncbi_country: USA: Colorado

ncbi_organism_name: Xanthomonas vasicola pv. vasculorum

ncbi_submitter: Colorado State U


ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_organism_name: Zoogloea sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Yangzhou

ncbi_isolation_source: drinking water

ncbi_organism_name: Escherichia coli


ncbi_isolation_source: cadmium-polluted paddy soil

ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: Central South University


ncbi_organism_name: Vicingus sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Enterococcus mundtii ATCC 882

ncbi_strain_identifiers: ATCC 882

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus mundtii;x__Enterococcus mundtii ATCC 882


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Center for Disease Prevention and Control of PLA


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken farm

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: sichuan university


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli


ncbi_country: China: Shanghai

ncbi_isolation_source: urban industrial factory reactor residue

ncbi_organism_name: Micrococcales bacterium

ncbi_submitter: Fudan University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Pacific Ocean: South China Sea

ncbi_organism_name: Methylococcaceae bacterium CS5

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Korea

ncbi_organism_name: Aestuariimicrobium kwangyangense DSM 21549

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Streptomyces sp. LBL

ncbi_strain_identifiers: LBL


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 161

ncbi_submitter: SC


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Chicago


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_assembly_name: R-18634 assembly

ncbi_organism_name: Burkholderia sp. LMG 32019

ncbi_submitter: LM-UGent


ncbi_organism_name: Henriciella sp.

ncbi_submitter: Jinan University


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Southampton


ncbi_organism_name: Thiomonas sp.

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_organism_name: Sphingobacterium griseoflavum

ncbi_submitter: University of Fribourg


ncbi_organism_name: Polyangia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: North West University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: USDA 240

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Flavobacterium sp. ZB4P13

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Aureispira sp.


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Helcococcus ovis

ncbi_submitter: University of Florida


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Micropepsaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Thermotogaceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp2 AA89

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp2 AA89

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: AAFC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Pseudomonas helleri

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Clavibacter sepedonicus

ncbi_strain_identifiers: GBBC 1958

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: uncultured Marinimicrobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: bacterium

ncbi_submitter: Inha University


ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: China Aricultural University


ncbi_assembly_name: Rumen uncultured genome RUG14645

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Atlantibacter hermannii


ncbi_organism_name: Streptomyces hydrogenans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Arthrobacter sp. lap29

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_isolation_source: AM-anode biofilm

ncbi_organism_name: Bryobacterales bacterium UBA690

ncbi_submitter: University of Queensland


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: lake water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Qingdao City

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Hubei Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: South Africa: Northern Cape Province

ncbi_isolation_source: Ear tissue

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: University of Pretoria


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: Somalia

ncbi_isolation_source: fermented camel milk

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Brigham Young University


ncbi_country: USA: GA

ncbi_isolation_source: field

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Tongue scraping

ncbi_organism_name: Streptococcus sp. 22.1


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Bristol


ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Chile

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_strain_identifiers: List 2-2

ncbi_submitter: University of Chile


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; Guaymas Basin; Black smoker hydrothermal vent

ncbi_isolation_source: marine hydrothermal chimney wall TVG10

ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_submitter: Environmental Microbiology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. houtenae;x__Salmonella enterica subsp. houtenae serovar 48:g,z51:-


ncbi_country: Belgium: Liege

ncbi_isolation_source: milk samples

ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: ANIWHA


ncbi_country: Mexico: Guaymas Basin

ncbi_isolation_source: marine sediment

ncbi_organism_name: Candidatus Zipacnadia bacterium

ncbi_submitter: University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;c__Candidatus Zipacnadia;x__unclassified Candidatus Zipacnadia;s__Candidatus Zipacnadia bacterium


ncbi_submitter: IZSLER

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: EMG


ncbi_country: Denmark: Ejby Moelle; Odense

ncbi_isolation_source: wastewater

ncbi_organism_name: Competibacteraceae bacterium UBA1593

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Competibacteraceae bacterium UBA1593


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Thailand

ncbi_isolation_source: soil polluted with palm oil mill effluent (POME) near a Waste oil treatment plant

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Alistipes stercorigallinarum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 261

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: NNAb 2511

ncbi_submitter: NNIIEM name acad.I.N. Blokhina


ncbi_country: USA: Florida

ncbi_isolation_source: blue hole oxygen minimum zone seawater 95 m-106 m

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_country: Canada: Ottawa

ncbi_isolation_source: chicken caeca 3

ncbi_organism_name: Lactobacillus sp. A27

ncbi_submitter: University of Ottawa


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: Adelaide Hills; SA

ncbi_isolation_source: feces

ncbi_organism_name: Opitutia bacterium


ncbi_country: France

ncbi_isolation_source: urine sample

ncbi_organism_name: Enterobacter hormaechei subsp. oharae

ncbi_submitter: CHU de Bicetre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. oharae


ncbi_organism_name: Syntrophorhabdus sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Hospital Sirio-Libanes

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lentimicrobium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Coastal waters Apponagansett Bay; South Dartmouth; Massachusetts

ncbi_isolation_source: seaweed attached to rock near shore

ncbi_organism_name: Cellulophaga sp. E6(2014)

ncbi_submitter: University of Massachusetts Dartmouth


ncbi_country: Hong Kong

ncbi_isolation_source: wound

ncbi_organism_name: Streptococcus oriscaviae

ncbi_submitter: The University of Hong Kong


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: University of Gothenburg

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Winogradskyella sp.

ncbi_submitter: Monash University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptococcus canis

ncbi_submitter: Hospital Universitario Marques de Valdecilla


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: Maysville; KY

ncbi_isolation_source: soil on farm

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Bard College


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: University of California at Davis


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Colon


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Corynebacterium parakroppenstedtii

ncbi_submitter: Guangdong Women and Children Hospital


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IMR


ncbi_country: USA: TX

ncbi_isolation_source: feces parrot

ncbi_submitter: FDA/CFSAN


ncbi_country: Colombia: Bogota

ncbi_submitter: International Center for Microbial Genomics - Universidad El Bosque


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Skin and soft tissue

ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: Zhejiang; Hangzhou

ncbi_submitter: Zhejiang University


ncbi_submitter: The Italian National Institute of Health


ncbi_organism_name: Yersinia enterocolitica


ncbi_isolation_source: infected rice leaf

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Guangxi University


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: JOHN INNES CENTRE, NORWICH, UK.


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: Monash University Malaysia


ncbi_country: Ireland

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: bioreactor

ncbi_organism_name: Mesotoga sp. UBA5847

ncbi_submitter: University of Queensland


ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_country: Russia: Moscow region

ncbi_isolation_source: plant pathogenic material

ncbi_organism_name: Pectobacterium atrosepticum

ncbi_submitter: Institute of Bioorganic Chemistry


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Mesorhizobium sp. M0062

ncbi_submitter: Washington State University


ncbi_country: Japan:Betsukai-machi; Hokkaido

ncbi_isolation_source: a methanogenic reactor

ncbi_organism_name: Brooklawnia propionicigenes

ncbi_submitter: Hirosaki University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Bulleidia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Nebraska

ncbi_isolation_source: cervico-vaginal swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidade de Sao Paulo


ncbi_country: China: Jiangsu

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Guangzhou Medical University


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Faecalimonas umbilicata

ncbi_submitter: BGI-Shenzhen


ncbi_country: China

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Shanghai Children's Hospital


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus AMMC6007

ncbi_submitter: Broad Institute


ncbi_country: India: Puttaparthi; Urology Ward

ncbi_isolation_source: Midstream urine

ncbi_submitter: Sri Sathya Sai Institute of Higher Learning


ncbi_country: Kenya

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Portugal: Lisboa

ncbi_isolation_source: Urinary Tract Infection

ncbi_organism_name: Klebsiella aerogenes


ncbi_country: Spain

ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: Food and Drug Administration-College Park


ncbi_organism_name: uncultured Parasutterella sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India: Vellore

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Christian Medical College and Hospital


ncbi_country: Peru: Lima

ncbi_submitter: UFMG


ncbi_organism_name: Acinetobacter nosocomialis


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: OM182 bacterium

ncbi_submitter: Institute of Microbiology and Genetics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__OMG group;x__OM182 clade;s__OM182 bacterium


ncbi_country: Nepal

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 20313;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Tateyamaria sp.

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Lachnoclostridium sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: South Africa: Charles Johnson Memorial

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0031

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Fengtai Region for Disease Control and Prevention, Beijing,China


ncbi_assembly_name: Methylovirgula sp. 4M-Z18

ncbi_organism_name: Methylovirgula sp. 4M-Z18

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Rhizobium sp. BK181

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Limiplasma sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;x__unclassified Candidatus Limiplasma;s__Candidatus Limiplasma sp.


ncbi_organism_name: Fructobacillus ficulneus

ncbi_submitter: Faculty of Bioindustry, Tokyo University of Agriculture


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Nanchang

ncbi_isolation_source: Poyang Lake

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_organism_name: Rhizorhapis suberifaciens


ncbi_organism_name: Helicobacter rodentium


ncbi_organism_name: uncultured Aureibaculum sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: WOUND/ABSCESS

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: Kenya: Kisii

ncbi_isolation_source: skin soft tissue

ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Kenya Medical Research Institute - United States Army Medical Research Directorate Kenya

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Alteromonas sp.

ncbi_submitter: Xiamen University


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Eubacterium limosum

ncbi_submitter: University of Chicago


ncbi_country: New Zealand

ncbi_isolation_source: feces (routine screen)

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: University of Stirling


ncbi_country: South Korea

ncbi_organism_name: Vibrio litoralis DSM 17657


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Marinovum sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Emcibacteraceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: USA: California

ncbi_isolation_source: California sea lion

ncbi_organism_name: Campylobacter insulaenigrae

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: BGI


ncbi_organism_name: Porphyromonadaceae bacterium UBA7479

ncbi_submitter: University of Queensland


ncbi_isolation_source: seawater

ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium 10-1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Blautia luti

ncbi_submitter: Department of gastroenterological surgery, Yokohama City University


ncbi_submitter: EMG


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: Ohio

ncbi_isolation_source: hospital shower hose biofilm

ncbi_organism_name: Blastomonas sp. CCH13-E1

ncbi_submitter: U.S. Environmental Protection Agency


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Moorella sp. (in: firmicutes)

ncbi_submitter: The Ohio State University


ncbi_country: China: Guangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: zhejiang University


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 318

ncbi_organism_name: Staphylococcus hyicus

ncbi_strain_identifiers: SNUC 5426

ncbi_submitter: University of Calgary


ncbi_organism_name: Gardnerella vaginalis


ncbi_country: Australia

ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: Menzies School of Health Research


ncbi_isolation_source: pepper

ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: Universidade de Sao Paulo


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Acidaminococcus fermentans

ncbi_submitter: Washington University School of Medicine


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Prevotella sp. CAG:279

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D7_bin-0801

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Firestoneibacteriota;x__unclassified Candidatus Firestoneibacteriota;s__Candidatus Firestoneibacteriota bacterium


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Viet Nam: Hanoi

ncbi_organism_name: Escherichia coli

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Scandinavium sp. SGZ-S8

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Florida


ncbi_organism_name: Dongia sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces of yak

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Faecalitalea sp. UBA4323

ncbi_submitter: University of Queensland


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: gastric feline helicobacters

ncbi_organism_name: Helicobacter ailurogastricus

ncbi_submitter: UGENT


ncbi_country: China

ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: China Agricultural University


ncbi_country: USA: Annandale-on-Hudson; NY

ncbi_isolation_source: grass soil

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Bard College


ncbi_assembly_name: Rumen uncultured genome RUG11443

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: SRCAMB


ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Enterobacter asburiae


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Salmonella sp. 2020_1399

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_organism_name: Qipengyuania sp. NPDC077563

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Rickettsia parkeri

ncbi_strain_identifiers: Tate's Hell

ncbi_submitter: University of Texas Medical Branch


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: Monash University


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Sao Paulo State University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: uncultured Paramuribaculum sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Micavibrio sp.


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Yenepoya (Deemed to be University)


ncbi_organism_name: Escherichia coli


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: uncultured Rickettsiales bacterium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_submitter: China Agricultural University


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Oligoflexia bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Papua New Guinea: D Entrecasteaux Islands

ncbi_isolation_source: PNG CO2 seep-control site

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Institute of Marine Science


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_submitter: Lund University


ncbi_country: New Zealand: Canterbury region

ncbi_organism_name: bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Palauibacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;f__Candidatus Palauibacteraceae;g__Candidatus Palauibacter;x__unclassified Candidatus Palauibacter;s__Candidatus Palauibacter sp.


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Salmonella sp. ZJQZ20_0031

ncbi_submitter: Zhejiang university


ncbi_organism_name: Salmonella sp. L44


ncbi_organism_name: Candidatus Saccharimonadia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;x__unclassified Candidatus Saccharimonadia;s__Candidatus Saccharimonadia bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Denmark: Kgs. Lyngby

ncbi_isolation_source: pool of bioreactors CSTR01a; CSTR02a; and CSTR03a; thermophilic anaerobic digestion of cattle manure in continuous reactors for biogas production (methane)

ncbi_organism_name: Clostridiales bacterium DTU069

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured bacterium


ncbi_country: China: Tibetan Plateau

ncbi_isolation_source: Tibetan Plateau glacier

ncbi_organism_name: Arthrobacter sp. B0490

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_assembly_name: Rumen uncultured genome RUG13723

ncbi_organism_name: uncultured Aeromonadales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: WY

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Prince of Songkla University


ncbi_country: Switzerland: Geneva

ncbi_isolation_source: Bronchial aspirate

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Genomic Research Laboratory (GRL)


ncbi_country: China: Sichuang

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin swab forehead

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Aarhus University


ncbi_country: USA: Oak Ridge; TN

ncbi_organism_name: Pseudomonas sp. FW305-96

ncbi_submitter: Arkin Lab


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater under a natural surface slick

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: China: Sichuan

ncbi_isolation_source: cattle farm

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: sichuan university


ncbi_country: Canada: Alberta

ncbi_isolation_source: throat

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: National Microbiology Laboratory


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_assembly_name: Rumen uncultured genome RUG10340

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Janibacter sp. HTCC2649

ncbi_submitter: The Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_country: USA: Utah

ncbi_isolation_source: blood stream

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Intermountain Healthcare


ncbi_assembly_name: Salmonella enterica CVM N48702 v1.0

ncbi_country: USA: LA

ncbi_isolation_source: Chicken Thighs

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: China CDC


ncbi_organism_name: Terrimicrobiaceae bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Antarctica: Devils Rocks; James Ross Island

ncbi_isolation_source: stone fragments from tundra biome

ncbi_organism_name: Pedobacter petrophilus

ncbi_submitter: Lycoming College


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Bartonella elizabethae

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: National University of Singapore


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: Rumen uncultured genome RUG12330

ncbi_organism_name: uncultured Coriobacteriaceae bacterium


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate ramp bioreactor

ncbi_organism_name: Micrococcales bacterium 72-143

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India: Kakinada; Andhra

ncbi_isolation_source: Sediment sample from a saltern

ncbi_organism_name: Virgibacillus dokdonensis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Ectothiorhodospiraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Iraq

ncbi_isolation_source: Chinese Duck Farm

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Alqadisiyah/ College of Veterinary Medicine


ncbi_country: USA

ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Kofleriaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Denmark: Vennelystparken

ncbi_isolate: GS

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: Candidatus Electronema aureum

ncbi_strain_identifiers: GS

ncbi_submitter: Aarhus University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: feces

ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Alberta


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bilophila sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Lake Alfred; FL

ncbi_isolation_source: citrus rhizosphere

ncbi_organism_name: Cellvibrio sp. 79

ncbi_submitter: Citrus Research and Education center, Univerisity of Florida


ncbi_isolation_source: Wound swab

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Schaalia odontolytica

ncbi_submitter: EMG


ncbi_organism_name: Longicatena caecimuris

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Ornithobacterium rhinotracheale

ncbi_submitter: National Vererinary Research Intitute


ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: Clostridia bacterium


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Anaerolineaceae bacterium UBA1024

ncbi_submitter: University of Queensland


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Broad Institute


ncbi_country: Nigeria

ncbi_isolation_source: wound

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Cepheid


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR3055

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Paludibacter sp. UBA4071


ncbi_organism_name: Thalassolituus sp.

ncbi_submitter: Xiamen University


ncbi_submitter: Universita Politecnica delle Marche


ncbi_country: Kenya

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_submitter: The REHAB Consortium


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_country: Netherlands

ncbi_organism_name: Xanthomonas phaseoli pv. dieffenbachiae

ncbi_submitter: Wageningen University & Research


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Holosporales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Calescamantes bacterium SCGC AAA471-M6

ncbi_strain_identifiers: SCGC AAA471-M6

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Calescibacteriota;x__unclassified Calescamantes;s__Calescamantes bacterium SCGC AAA471-M6


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B371;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_country: Honduras

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_country: South Korea: mountain of Deogyusan

ncbi_isolation_source: soil

ncbi_organism_name: Deinococcus puniceus

ncbi_submitter: Seoul Women's University


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Italy

ncbi_organism_name: Serratia fonticola


ncbi_organism_name: Methylobacter tundripaludum 31/32


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Venezuela

ncbi_isolation_source: Surgical wound

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Mesorhizobium sp. WSM2239

ncbi_submitter: Murdoch University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bilophila sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Mexico: Guadalajara

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 1 10 to 15cm

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Subacute bacterial endocarditis

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: University of Malaya


ncbi_country: USA: FL

ncbi_isolation_source: Calf

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_country: Mexico

ncbi_submitter: FDA/CFSAN


ncbi_submitter: Ocean University of China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Sedimenticola;x__unclassified Sedimenticola;s__Candidatus Sedimenticola sp. (ex Thyasira tokunagai)


ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Hungatella sp.


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: India: Hyderabad

ncbi_isolation_source: fermented food

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Unique Biotech Limited


ncbi_country: China: Yushu prefecture; Qinghai Province

ncbi_isolation_source: the intestinal contents of Marmot

ncbi_organism_name: Cellulomonas chengniuliangii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_submitter: Faculdade de Medicina Veterinaria e Zootecnia de Botucatu

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Cerro


ncbi_country: China: Jiangsu

ncbi_isolate: bin 4

ncbi_isolation_source: activated sludge

ncbi_organism_name: Xanthobacter sp.

ncbi_strain_identifiers: bin 4

ncbi_submitter: Zhejiang University


ncbi_isolate: clinical

ncbi_isolation_source: clinical

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: clinical

ncbi_submitter: Faculty of Health Sciences


ncbi_country: Australia

ncbi_isolation_source: Feces

ncbi_organism_name: Bacteroidales bacterium M14

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M14


ncbi_organism_name: Alteromonas abrolhosensis

ncbi_submitter: Tang lab


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01029

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01029


ncbi_organism_name: Spiroplasma sp. DGKH1

ncbi_submitter: GUANGDONG PROVINCIAL HOSPITAL OF CHINESE MEDICINE


ncbi_country: USA: Lake College; Michigan

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Max Planck Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: KING ABDULAZIZ UNIVERSITY


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: China: Hangzhou

ncbi_isolation_source: Arteriovenous catheter

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Hangzhou First People's Hospital


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: National Institute of Agricultural Technology (INTA)


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Blautia wexlerae


ncbi_organism_name: Streptococcus parasanguinis ATCC 15912

ncbi_submitter: Baylor College of Medicine


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 192 - depth 500m

ncbi_organism_name: Moraxellaceae bacterium REDSEA-S45_B11

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_country: USA: Wisconsin

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: University of Wisconsin-Madison


ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: UNIVERSITY OF SEVILLA


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EBI


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: China: Heilongjiang

ncbi_isolation_source: soybean root

ncbi_organism_name: Actinoplanes hulinensis

ncbi_submitter: School of life science


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_isolation_source: Distal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Canada: Vancouver

ncbi_isolation_source: ear; mastoid biopsy

ncbi_organism_name: Auritidibacter sp. NML120636

ncbi_submitter: national microbiology laboratory


ncbi_organism_name: uncultured Rhodococcus sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Daviesbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Daviesiibacteriota;x__unclassified Candidatus Daviesbacteria;s__Candidatus Daviesbacteria bacterium


ncbi_country: France: Normandy

ncbi_isolation_source: sink trap

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: AAFC


ncbi_isolation_source: Faeces


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Wilmar International Limited


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_submitter: marine college, shandong university


ncbi_country: India: Manipal

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Lachnospiraceae bacterium UBA3766

ncbi_submitter: University of Queensland


ncbi_country: USA: California

ncbi_isolation_source: leaf litter

ncbi_organism_name: Curtobacterium sp. MCBD17_028

ncbi_submitter: University of California, Irvine


ncbi_country: India: Gujarat

ncbi_isolation_source: oil contaminated water

ncbi_organism_name: Xylanimonas oleitrophica

ncbi_submitter: Agharkar Research Institute


ncbi_organism_name: Collinsella sp. CLA-ER-H6

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Coleofasciculus sp. E1-EBD-02

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: Fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSERM UMR 1137


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Candidatus Wolfebacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wolfeibacteriota;x__unclassified Candidatus Wolfebacteria;s__Candidatus Wolfebacteria bacterium


ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Actinomycetaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Toho university


ncbi_submitter: MRSN BI Team


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Microcystis panniformis

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Dolichospermum planctonicum

ncbi_submitter: The University of Texas at Austin


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Rectinemataceae bacterium


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: Yoonia sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Escherichia coli

ncbi_submitter: Leibniz Institute of Photonic Technology


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Zurich


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Center for Genome Regulation (CRG)


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bryobacteraceae bacterium


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_submitter: dtu national food institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: EMG


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Amnibacterium sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Aerophobota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aerophobota;s__Candidatus Aerophobota bacterium


ncbi_organism_name: Acidobacteria bacterium UBA6911

ncbi_submitter: concordia university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__unclassified Acidobacteriota;s__Acidobacteria bacterium UBA6911


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: uncultured Thermotogae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;x__environmental samples;s__uncultured Thermotogae bacterium


ncbi_country: China: Longli Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core A

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Denmark: Skive

ncbi_isolation_source: activated sludge from Skiv_18-Q3-R9-52

ncbi_organism_name: Chlorobiota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__unclassified Chlorobiota;s__Chlorobiota bacterium


ncbi_isolation_source: gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Serratia marcescens

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Bulleidia sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Hungary

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Yale School of Public Health


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Sichuan University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sheffield


ncbi_organism_name: Enterobacter chengduensis

ncbi_submitter: Bicetre hospital


ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Parvibaculales bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID 4160

ncbi_submitter: University Hospital Regensburg


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Evtepia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Evtepia;x__unclassified Evtepia;s__Evtepia sp.


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0842

ncbi_submitter: Broad Institute


ncbi_submitter: University of Southern California


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Innoviva Specialty Therapeutics


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: WI

ncbi_isolation_source: Skin/Wound

ncbi_submitter: Wisconsin State Laboratory of Hygiene