ncbi_country: France

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: China: Changsha

ncbi_genome_representation: full

ncbi_isolation_source: liver abscess

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Beijing genomics institute


ncbi_assembly_level: Contig

ncbi_country: France: Toulouse

ncbi_isolation_source: arthritis suppuration

ncbi_organism_name: Clostridium tetani

ncbi_submitter: Aarhus University


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Mexico: CDMX

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: INSTITUTO MEXICANO DEL SEGURO SOCIAL


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Streptomyces phaeoluteigriseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Bacillus velezensis

ncbi_strain_identifiers: Bacillus velezensis F3A

ncbi_submitter: Lanzhou Jiaotong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_genome_category: derived from metagenome

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: EMG


ncbi_country: Thailand: Phayao

ncbi_isolation_source: tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Faculty of Public Health


ncbi_country: Australia: Western Australia; Roebuck Bay

ncbi_submitter: Federation University Australia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hvittingfoss


gtdb_representative: t

ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Bartonella sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Paenibacillus chartarius

ncbi_refseq_category: reference genome

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Aerococcus urinaeequi

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Roseiflexus sp.

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: Oregon State University


ncbi_organism_name: Yersinia sp. (in: enterobacteria)

ncbi_submitter: The Helmholtz Centre of Environmental Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__unclassified Yersinia (in: enterobacteria);s__Yersinia sp. (in: enterobacteria)


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Curtissiibacteriota;s__Candidatus Curtissbacteria bacterium RIFCSPHIGHO2_12_FULL_38_37


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Japan Agency for Marine-Earth Science and technology


ncbi_isolation_source: Decaying crab carapace; Roscoff; France

ncbi_organism_name: Saprospira grandis DSM 2844

ncbi_submitter: JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Saprospiria;o__Saprospirales;f__Saprospiraceae;g__Saprospira;s__Saprospira grandis;x__Saprospira grandis DSM 2844


ncbi_assembly_name: IMG-taxon 2617270786 annotated assembly

ncbi_organism_name: Nocardioides terrae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F22648

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Uganda: Bombo Military Hospital

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_organism_name: Chitinimonas sp.

ncbi_submitter: Xiamen University


ncbi_country: Germany: Aachen

ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Anaerotignum lactatifermentans

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_strain_identifiers: USDA 137

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: household surface

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Algeria: Bejaia

ncbi_isolation_source: Mint

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ANSES


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2-005-03_S3_C3

ncbi_submitter: IGS


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: Rumen uncultured genome RUG10871

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Enterococcus durans

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_assembly_name: Pseudomonas sp. strain CCOS 191

ncbi_organism_name: Pseudomonas sp. CCOS 191

ncbi_strain_identifiers: CCOS 191

ncbi_submitter: JLU


ncbi_organism_name: Xanthomonas citri pv. punicae

ncbi_submitter: University of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. punicae


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Actinobaculum suis

ncbi_submitter: Capital Region


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: pathological tissue

ncbi_organism_name: Atlantibacter hermannii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: France: Paris

ncbi_isolation_source: urethral discharge

ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: TUR

ncbi_submitter: CHU Bichat


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sheffield


ncbi_country: USA: Philadelphia

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: University of Pennsylvania


ncbi_organism_name: Nocardia sp. NPDC051929

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_submitter: CeBiTec, Bielefeld University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas translucens;x__Xanthomonas translucens pv. translucens;x__Xanthomonas translucens pv. translucens DSM 18974


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: EMG


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Russia: Uzon Caldera; Kamchatka; Zavarzin hot spring

ncbi_isolation_source: hot spring

ncbi_organism_name: Roseiflexus castenholzii

ncbi_submitter: Laetitia Wilkins's shared submissions


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Washington


ncbi_organism_name: Jeotgalibacillus sp. JSM ZJ347

ncbi_strain_identifiers: JSM ZJ347

ncbi_submitter: Jishou University


ncbi_assembly_name: Burkholderia sp. LMG 29322

ncbi_isolation_source: soil

ncbi_organism_name: Caballeronia hypogeia

ncbi_submitter: LM-UGent


ncbi_country: China: Hebei Province

ncbi_isolation_source: root nodule

ncbi_organism_name: Neorhizobium vignae

ncbi_strain_identifiers: CCBAU 05176


ncbi_organism_name: Rhizobium changzhiense

ncbi_strain_identifiers: WYCCWR 11279

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Brachyspira sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: pale brown pustular leaf lesion

ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_strain_identifiers: LMG 667

ncbi_submitter: Institut de Recherche pour le Developpement


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_assembly_name: freshwater MAG --- Umea2_bin-1020

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0212

ncbi_submitter: Broad Institute


ncbi_country: Italy

ncbi_isolation_source: Fecal sample

ncbi_organism_name: Bifidobacterium pseudolongum

ncbi_submitter: University of Parma


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_country: Finland

ncbi_isolation_source: food: lettuce

ncbi_organism_name: Yersinia pekkanenii

ncbi_submitter: SC


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Sulfitobacter sp.


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_country: USA:Durham; North Carolina

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Duke University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Brachyspira pilosicoli

ncbi_submitter: Animal and Plant Health Agency


ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_organism_name: Vibrio diabolicus

ncbi_strain_identifiers: CNCM I-1629

ncbi_submitter: STATION BIOLOGIQUE DE ROSCOFF

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_assembly_name: Sphingobacterium 2.0

ncbi_country: Svalbard: Ny-Alesund

ncbi_isolation_source: arctic permafrost soil

ncbi_organism_name: Sphingobacterium sp. IITKGP-BTPF85

ncbi_submitter: Indian Institute of Technology Kharagpur


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: dianzhenduan


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Russia: Moscow

ncbi_isolation_source: derived from the strain Pseudomonas aeruginosa ATCC 27853

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Lutibacter sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Ancylobacter oerskovii

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: Distal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Yantai

ncbi_organism_name: Bacillus mojavensis

ncbi_submitter: Ludong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus mojavensis


ncbi_organism_name: Streptomyces sp. NPDC023998

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: France: Besancon

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MRSN BI Team


ncbi_country: China: Guangdong

ncbi_submitter: South China Agricultural University


ncbi_country: China: Hebei; Shijiazhuang

ncbi_isolation_source: stool

ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA: Colorado;Grand_Junction

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Staphylococcus sp. GDY8P83P


ncbi_country: Turkey

ncbi_organism_name: Curtobacterium flaccumfaciens pv. flaccumfaciens

ncbi_submitter: USDA


ncbi_country: Poland: Warsaw

ncbi_isolation_source: clinical sample

ncbi_submitter: National Medicines Institiute


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter lanienae

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Bernardetia sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Medicine Budapest


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: pistachio

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg;x__Salmonella enterica subsp. enterica serovar Senftenberg str. 316235162


ncbi_organism_name: Blautia wexlerae


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Aerococcus christensenii

ncbi_submitter: EMG


ncbi_country: South Africa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Niameybacter sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Fusobacterium mortiferum


ncbi_organism_name: Chryseobacterium sp. 18061

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Paraclostridium sordellii


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: Bangladesh

ncbi_isolation_source: soil

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_country: Canada

ncbi_isolation_source: manure

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Ruthenibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1437

ncbi_submitter: Broad Institute


ncbi_organism_name: Streptomyces rubiginosohelvolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: freshwater MAG --- LJ-3-9m_bin-538

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_country: Japan

ncbi_isolation_source: Uriue

ncbi_submitter: Toho University


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: x

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Forsyth Institute


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: SCOPE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: France

ncbi_isolation_source: pulmonary fluid

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Universite Paris-Sud


ncbi_country: Denmark: Ejby Moelle; Odense

ncbi_isolation_source: wastewater

ncbi_organism_name: Pedobacter sp. UBA1951

ncbi_submitter: University of Queensland


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: culture collection deposit

ncbi_organism_name: Streptomyces clavuligerus

ncbi_strain_identifiers: NCIMB 14335

ncbi_submitter: John Innes Centre


ncbi_country: China: Guangxi

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_assembly_level: Chromosome

ncbi_organism_name: Cupriavidus pauculus

ncbi_submitter: Amager and Hvidovre Hospital


ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Gifu University - Life Science Research Center - Division of Anaerobe Resear ch


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: Poland: Nowa Sol

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_country: Croatia: Zagreb

ncbi_isolation_source: Hospital wastewater

ncbi_submitter: Rudjer Boskovic Institute


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: India

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National institute for research in tuberculosis


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_isolation_source: urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_isolation_source: metagenome

ncbi_organism_name: Stenotrophomonas sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Solirubrobacteraceae bacterium


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;x__unclassified Spiroplasma;s__Spiroplasma endosymbiont of Cantharis lateralis


ncbi_country: Bolivia: Cochabamba

ncbi_isolation_source: Endotracheal tube

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of the Basque Country UPV/EHU


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia sp. MSMB1835

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Mycolicibacterium obuense

ncbi_submitter: Uppsala University


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Candidatus Doudnabacteria bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;x__unclassified Candidatus Doudnabacteria;s__Candidatus Doudnabacteria bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Midwest

ncbi_organism_name: Francisella orientalis


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Planktothrix sp. PCC 11201

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA-ARS


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: China

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: Pakistan

ncbi_organism_name: Metapseudomonas otitidis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China


ncbi_organism_name: Duncaniella muris


ncbi_country: China: Beijing

ncbi_organism_name: Jutongia hominis

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Microbacterium sp.

ncbi_submitter: University of Minnesota


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: North West University


ncbi_organism_name: Salmonella sp. C3183

ncbi_submitter: Sichuan University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University College Cork


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Massilia oculi

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Desulfobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Rural Development Administration


ncbi_organism_name: Devosiaceae bacterium

ncbi_submitter: Ocean University of China


ncbi_isolation_source: lake water

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Faecalibacterium sp.


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: University of Michigan


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Brazil: Dourados

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Spirochaetaceae bacterium


ncbi_organism_name: Rhabdaerophilaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Dorea amylophila

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Oregon bay

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: IFREMER


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Porcinotec Co., Ltd


ncbi_organism_name: Bacillus cereus

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: United Kingdom: Addenbrooke s hospital

ncbi_isolation_source: UC fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: San Diego State University


ncbi_country: Japan

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Indian Ocean: Indian Monsoon Gyres Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Sunchang

ncbi_isolation_source: Traditional fermented soybean pastes

ncbi_organism_name: Bacillus velezensis

ncbi_strain_identifiers: JSRB 08

ncbi_submitter: Microbial Institute for Fermentation Industry

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Nitrospinota/Tectimicrobiota group;p__Candidatus Tectimicrobiota;x__unclassified Candidatus Tectomicrobia;s__Candidatus Tectomicrobia bacterium RIFCSPLOWO2_02_FULL_70_19


ncbi_country: Egypt: Wadi Natrun

ncbi_isolation_source: soda lake

ncbi_organism_name: Halorhodospira halochloris

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_country: Pacific Ocean

ncbi_isolation_source: marine environment

ncbi_organism_name: Synechococcus sp. TAK9802

ncbi_submitter: Station Biologique de Roscoff (CNRS - Sorbonne University)


ncbi_organism_name: Treponema pallidum

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Vulcanimicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: India: Imphal

ncbi_isolation_source: Fermented fish Ngari

ncbi_organism_name: Ligilactobacillus pobuzihii

ncbi_submitter: IBSD


ncbi_submitter: University of Zurich


ncbi_country: Switzerland: Geneva

ncbi_isolation_source: sewage

ncbi_organism_name: Mesorhizobium hungaricum

ncbi_submitter: University of Applied Sciences of Western Switzerland hepia


ncbi_organism_name: Listeria ivanovii

ncbi_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention


ncbi_organism_name: Verrucomicrobiota bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Yonsei University


ncbi_isolation_source: Seawater

ncbi_organism_name: Vibrio zhanjiangensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Brazil

ncbi_isolation_source: Fecal swab

ncbi_organism_name: Escherichia coli O25b:H4-ST131

ncbi_submitter: LAPCOM - FMVZ - USP


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: tidal flat

ncbi_organism_name: Christiangramia aestuarii

ncbi_submitter: Ocean University of China


ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: Australia

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: SC


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: China: SiChuan

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_country: Spain: Madrid

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_country: Israel

ncbi_strain_identifiers: KPC 39

ncbi_submitter: TLVMC


ncbi_organism_name: Capnocytophaga canimorsus


ncbi_country: USA

ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Alteromonas macleodii


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_organism_name: Acidobacteriota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: INRA


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Nitrospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Prevotellamassilia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Geneva University Hospitals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Shenzhen

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: BGI


ncbi_country: Brazil: Sao Paulo; Sao Paulo

ncbi_isolation_source: urine

ncbi_submitter: Instituto Adolfo Lutz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,5,12:r:-


ncbi_country: Tunisia

ncbi_isolation_source: gill

ncbi_organism_name: Candidatus Thiodiazotropha weberae

ncbi_submitter: University of California, Davis


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: TAILORED-Treatment project


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Escherichia coli O104:H4 str. Ec12-0466

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O104:H4;x__Escherichia coli O104:H4 str. Ec12-0466


ncbi_isolation_source: lung

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Ares Genetics


ncbi_country: Germany: Frankfurt am Main

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Malawi

ncbi_isolation_source: Blood

ncbi_submitter: SC


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Singapore

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Temasek Life Sciences Laboratory Limited


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck


ncbi_country: USA: Massachusetts

ncbi_isolation_source: filtered seawater (5um filter)

ncbi_organism_name: Vibrio tasmaniensis 5F-79


ncbi_organism_name: uncultured Desulfatiglans sp.

ncbi_submitter: Genoscope CEA


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Tokyo Institute of Technology


ncbi_organism_name: Plantactinospora sp. WMMB782

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Canada: Ontario

ncbi_isolation_source: dairy cattle manure digester

ncbi_submitter: JPIAMR ARMIS


ncbi_isolation_source: Algae: Pseudopediastrum boryanum

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Ignavibacteria bacterium UBA5590

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__unclassified Ignavibacteria;s__Ignavibacteria bacterium UBA5590


ncbi_assembly_name: Rumen uncultured genome RUG13001

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Jeonbuk National University


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Veillonella montpellierensis

ncbi_submitter: EMG


ncbi_assembly_name: IMG-taxon 2606217758 annotated assembly

ncbi_organism_name: Sharpea azabuensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Uruguay

ncbi_organism_name: Leptospira noguchii

ncbi_submitter: INRS-Centre Armand-Frappier Sante Biotechnologie


ncbi_country: Canada: Lacombe

ncbi_organism_name: Blautia sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Malaysia

ncbi_isolation_source: closed biodigester

ncbi_organism_name: Christensenella sp. UBA1428


ncbi_strain_identifiers: Gottschalk 992B

ncbi_submitter: The J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus agalactiae;x__Streptococcus agalactiae str. Gottschalk 992B


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_country: India: Puttaparthi

ncbi_isolation_source: blood

ncbi_organism_name: Brucella anthropi

ncbi_submitter: Sri Sathya Sai Institute of Higher Learning


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA

ncbi_isolation_source: human blood

ncbi_organism_name: Lactobacillus johnsonii

ncbi_strain_identifiers: CIRM-BIA 674

ncbi_submitter: Brigham Young University


ncbi_country: USA: New York

ncbi_isolation_source: Intestinal Contents

ncbi_submitter: Brigham and Women's Hospital


ncbi_organism_name: Mesomycoplasma hyopneumoniae

ncbi_submitter: Universiteit Gent


ncbi_country: France

ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: marine metagenome


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: United Kingdom

ncbi_submitter: University of Leeds


ncbi_assembly_name: De novo assembly of KCRI isolate R0004_302

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_organism_name: Candidatus Midichloriaceae bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Candidatus Midichloriaceae;x__unclassified Candidatus Midichloriaceae;s__Candidatus Midichloriaceae bacterium


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: intact colon fecal sample

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: MFS 5

ncbi_submitter: USDA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Switzerland

ncbi_isolation_source: Cheese starter culture

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: University of Lausanne


ncbi_country: Brazil:Sao Paulo; Santos

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Archangium sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Porphyromonas catoniae ATCC 51270

ncbi_submitter: Baylor College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas catoniae;x__Porphyromonas catoniae ATCC 51270


ncbi_country: China: Guangdong

ncbi_isolation_source: pig

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: Aquarium

ncbi_organism_name: Pseudoalteromonas shioyasakiensis

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Vibrio cholerae HC-28A1

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: India: Vellore

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: China: Sichuan

ncbi_submitter: China Agricultural University


ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Cepheid


ncbi_country: Senegal: Niokolo-Koba National Park

ncbi_isolation_source: fecal sample

ncbi_organism_name: Morganella morganii

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sciensano


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA147

ncbi_submitter: Broad Institute


ncbi_country: Bangladesh

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_organism_name: Nitrosopumilus sp.

ncbi_submitter: Tang lab


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: China: Henan

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Roseburia sp. AF25-15LB

ncbi_submitter: BGI


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: Blood culture

ncbi_submitter: Univeristy of Pretoria and National Health Laboratory Services


ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: University of Galway


ncbi_country: Brazil

ncbi_isolation_source: Egg

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_assembly_name: Rumen uncultured genome RUG598

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Paludibacter propionicigenes

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: New Zealand: Auckland

ncbi_submitter: Massey University


ncbi_country: France

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CHU de Bicetre


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: University of Montreal


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: Germany: Jena

ncbi_isolation_source: Incubator

ncbi_submitter: Jena University Hospital


ncbi_organism_name: Brucella abortus bv. 1 str. NI016

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella abortus;x__Brucella abortus bv. 1;x__Brucella abortus bv. 1 str. NI016


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Holophaga sp.

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Kenya: Kericho

ncbi_isolation_source: skin soft tissue

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Kenya Medical Research Institute - United States Army Medical Research Directorate Kenya

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Rhizobium sp. UGM030330-04

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: IZSLER

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_submitter: West African Centre for Cell Biology of Infectious Pathogens

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: Denmark: Skive

ncbi_isolation_source: activated sludge from Skiv_18-Q3-R9-52

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_assembly_name: Rumen uncultured genome RUG11651

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: activated sludge

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University Hong Kong


ncbi_assembly_name: Rumen uncultured genome RUG11214

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: liver

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Tulsa


ncbi_isolation_source: feces


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Gemmiger sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: CO

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


gtdb_type_species_of_genus: t

ncbi_organism_name: Actinacidiphila yeochonensis CN732


ncbi_country: Canada: Nova Scotia

ncbi_isolation_source: human heart valve

ncbi_organism_name: Coxiella burnetii

ncbi_strain_identifiers: Ko Q229

ncbi_submitter: National Institutes of Health


ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: USA: TX; El Paso

ncbi_isolation_source: soil

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Texas A&M university


ncbi_isolation_source: trach wash

ncbi_organism_name: Escherichia coli

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: China: Anhui

ncbi_isolation_source: meat

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_organism_name: Bacillus velezensis

ncbi_strain_identifiers: BZR 277

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0537

ncbi_submitter: Broad Institute


ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Salinisphaeraceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: termite gut

ncbi_organism_name: Tannerella sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Southern California


ncbi_country: China: Shenzhen

ncbi_submitter: Tsinghua University


ncbi_country: New Zealand

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: L

ncbi_submitter: University of Otago


ncbi_assembly_name: freshwater MAG --- AlinenSedimentsCore1_bin-0953

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Nakamurella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptococcus australis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_submitter: MRSN BI Team


ncbi_organism_name: Streptomyces sp. NPDC059166

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Vicinamibacterales bacterium


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wisconsin-Madison


ncbi_submitter: Group Que, Inselspital Bern


ncbi_organism_name: Wenzhouxiangella sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: [Clostridium] scindens

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_submitter: National Institutes of Health, Malaysia


ncbi_organism_name: Roseovarius tibetensis

ncbi_submitter: ZheJiang University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: California; Middletown

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Deltaproteobacteria bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Tissierellia bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Corallococcus exiguus

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: uncut heroin sample

ncbi_organism_name: Priestia megaterium

ncbi_submitter: Bielefeld University


ncbi_country: China: South China Sea

ncbi_isolation_source: Marine sediment

ncbi_organism_name: Bacillus sp. Cs-700

ncbi_submitter: Third Institute of Oceanography, MNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. Cs-700


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Pluralibacter sp. UBA7423

ncbi_submitter: University of Queensland


ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Cyanobacteria bacterium MAG COS4_bin_21

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium MAG COS4_bin_21


ncbi_organism_name: Actinomyces sp.

ncbi_submitter: Hospital Sirio-Libanes


ncbi_isolation_source: human gut

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: EMG


ncbi_country: Germany: Frankfurt am Main

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: USA: Danvile; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Balneola sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Colroado Anschutz Medical Campus


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Nepal

ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: Factory - External Area

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Surrey


ncbi_country: India: Uttarakhand

ncbi_isolation_source: intestine

ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: ICAR-Directorate of Coldwater Fisheries Research


ncbi_strain_identifiers: Brem 179

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira kirschneri;x__Leptospira kirschneri serovar Valbuzzi;x__Leptospira kirschneri serovar Valbuzzi str. Brem 179


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alteromonas australica

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Fusobacterium varium


ncbi_organism_name: Streptomyces pharetrae CZA14

ncbi_submitter: University of the Western Cape


ncbi_isolation_source: water

ncbi_organism_name: Listeria welshimeri

ncbi_submitter: Cornell University


ncbi_country: Germany: City of Bremen

ncbi_isolation_source: Mud from freshwater ditch

ncbi_organism_name: Aromatoleum bremense

ncbi_submitter: General and Molecular Microbiology


ncbi_organism_name: Mycobacterium intracellulare

ncbi_submitter: Division of Infectious Animal Disease Research National Agriculture and Food Research Organization, National Institute of Animal Health


ncbi_country: Germany: Altingen; artesian well

ncbi_isolation_source: enrichment culture sampled from a low-nitrate anoxic artesian well

ncbi_organism_name: Candidatus Ferrigenium altingense

ncbi_submitter: University of Tuebingen


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: human-fecal

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: World Institute of Kimchi


ncbi_country: USA: WI

ncbi_isolation_source: Skin/Wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Wisconsin State Laboratory of Hygiene


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Bacillus licheniformis

ncbi_strain_identifiers: NCTC 6816

ncbi_submitter: NIZO food research


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: Washington state

ncbi_isolation_source: stool/fecal sample

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Cutibacterium acnes HL050PA1

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Shandong University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Lachnospiraceae bacterium OM04-12BH

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolate: Fecal samples

ncbi_isolation_source: LBC

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: East China Normal University


ncbi_country: South Korea

ncbi_isolation_source: food

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_organism_name: Brevibacillus parabrevis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Macao

ncbi_isolation_source: Cooked duck

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: Enterobacter sp. BIDMC 27

ncbi_strain_identifiers: BIDMC 27

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter sp. BIDMC 27


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_submitter: SC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Thailand

ncbi_organism_name: Glycomyces amatae

ncbi_submitter: National Center for Genetic Engineering and Biotechnology (BIOTEC)


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. CBMA291

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Paenibacillus hunanensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: dianzhenduan


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Spirosoma fluviale

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Czech Academy of Science


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: King Abdullah University Science and Technology


ncbi_country: USA:Nine Springs Wastewater Treatment Plant; Madison Metropolitan Sewerage District; Dane County; Madison; WI

ncbi_isolation_source: alternating anaerobic and microareobic bioreactor

ncbi_organism_name: bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Lachnospiraceae bacterium GAM79

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chile: Regin metropolitana

ncbi_isolation_source: cecum

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Infantis

ncbi_submitter: UNIVERSIDAD ANDRES BELLO


ncbi_organism_name: Ruminococcaceae bacterium AB4001

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Candidatus Obscuribacterales bacterium

ncbi_submitter: Northeastern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;x__unclassified Candidatus Obscuribacterales;s__Candidatus Obscuribacterales bacterium


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater outflow

ncbi_organism_name: Escherichia coli

ncbi_submitter: BIOTEC


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Libya

ncbi_isolation_source: Libyan oil-polluted soil

ncbi_organism_name: Rhodococcus pyridinivorans

ncbi_submitter: Belarusian State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_submitter: SurvCARE


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Litoreibacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: Atlantis Massif Sediment

ncbi_submitter: Bigelow Laboratory For Ocean Sciences


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: uncultured Aquiluna sp.

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;x__Luna cluster;x__Luna-1 subcluster;g__Aquiluna;x__environmental samples;s__uncultured Aquiluna sp.


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by MDA; seawater

ncbi_organism_name: SAR116 cluster bacterium AG-321-A13

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__SAR116 cluster bacterium AG-321-A13


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Distal colon

ncbi_organism_name: Acutalibacter muris


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Prevotella sp. UBA3294

ncbi_submitter: University of Queensland


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Lentimicrobiaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: California

ncbi_organism_name: Capnocytophaga cynodegmi

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Denmark: Odense

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus gallolyticus subsp. gallolyticus

ncbi_submitter: Region Zealand


ncbi_country: Czech Republic

ncbi_isolation_source: intestinal contents of pig

ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: Groin

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: UNIVERSITY OF TROMSO


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Denmark

ncbi_isolation_source: Rhizosphere soil of spring barley

ncbi_organism_name: Luteibacter rhizovicinus DSM 16549

ncbi_submitter: McMaster University


ncbi_organism_name: Ruminococcus intestinalis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: KPNW

ncbi_submitter: University of Dhaka


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Corynebacterium sp. HMSC28B08

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Cardiff University School of Medicine


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Thiofaba sp. EF100

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Smithella sp.


ncbi_country: USA: Washington

ncbi_isolation_source: stool sample

ncbi_organism_name: Vibrio parahaemolyticus 3324

ncbi_submitter: NOAA Northwest Fisheries Science Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus 3324


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 1-5 micron fraction

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Balneolaceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;x__environmental samples;s__uncultured Balneolaceae bacterium


ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Brazil: So Paulo state; Taquaritinga city

ncbi_isolation_source: Cashew leaves with angular spot symptoms

ncbi_organism_name: Xanthomonas citri pv. anacardii

ncbi_submitter: UFRPE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. anacardii


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: mBioClim


ncbi_organism_name: Candidatus Cloacimonadaceae bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;x__unclassified Candidatus Cloacimonadaceae;s__Candidatus Cloacimonadaceae bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Saprospirales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: pig gut metagenome


ncbi_country: USA

ncbi_organism_name: Raoultella sp. RLT01

ncbi_submitter: University of Chicago


ncbi_organism_name: Escherichia coli


ncbi_country: USA: Ohio

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: Pseudomonas proteolytica

ncbi_submitter: groningen institute for evolutionary life sciences, university of groningen


ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_country: India: Gorchuk; Guwahati; Assam

ncbi_isolation_source: feces

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_organism_name: Pedobacter sp. KACC 23697

ncbi_submitter: National Institute of Agricultural Sciences, Rural Development Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter;x__unclassified Pedobacter;s__Pedobacter sp. KACC 23697


ncbi_organism_name: Sphingobium sp. MI1205

ncbi_submitter: Graduate School of Life Sciences, Tohoku University


ncbi_organism_name: Curvivirga sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: EMG


ncbi_organism_name: Collinsella intestinalis

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: colonic content of eviscerated cattle

ncbi_submitter: US Meat Animal Research Center


ncbi_country: China: Ningxia Hui Autonomous Region

ncbi_organism_name: Pectobacterium carotovorum

ncbi_submitter: Inner Mongolia Potato Engineering & Technology Research Center


ncbi_country: China: Shenzhen

ncbi_organism_name: Roseburia sp. AF12-17LB

ncbi_submitter: BGI


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: rabbit gut

ncbi_organism_name: Corynebacterium casei

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: Zhejiang university


ncbi_country: India: Silagrant; Guwahati; Assam


ncbi_organism_name: Reichenbachiella sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Case Western Reserve University


ncbi_isolation_source: coal mine effluent

ncbi_organism_name: Acidithiobacillus ferridurans

ncbi_strain_identifiers: DSM 583

ncbi_submitter: Fundacion Ciencia y Vida


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Porphyromonadaceae bacterium UBA7732

ncbi_submitter: University of Queensland


ncbi_organism_name: Kocuria sp. CPCC 205297

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Kocuria;x__unclassified Kocuria;s__Kocuria sp. CPCC 205297


ncbi_organism_name: Microbispora hainanensis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Bacteroides finegoldii


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Wolfebacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wolfeibacteriota;x__unclassified Candidatus Wolfebacteria;s__Candidatus Wolfebacteria bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: South Korea: Yangpyeong

ncbi_isolation_source: gastric system of dairy cattle fetus

ncbi_organism_name: Brucella abortus A13334

ncbi_submitter: Macrogen


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Streptomyces sp. SID5614

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Thomasclavelia cocleata


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Shewanella algae

ncbi_submitter: Yangzhou University


ncbi_submitter: ghent university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Commensalibacter;s__Commensalibacter papalotli (ex Botero et al. 2024)


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: Mexico: Gulf of Mexico

ncbi_isolation_source: Synechococcus sp. WH 8007 enrichment culture from coastal seawater

ncbi_organism_name: Rhizobium sp.

ncbi_submitter: Mount Allison University


ncbi_isolation_source: aerobic seawater sample

ncbi_organism_name: Rhodobacterales bacterium LSUCC0031

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Ruthenibacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Westen Cape

ncbi_isolation_source: Paediatrics (neonatalogy)

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: Niger: Goure

ncbi_isolation_source: lung

ncbi_submitter: CIRAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma capricolum;sb__Mycoplasma capricolum subsp. capripneumoniae


ncbi_organism_name: Microcoleus sp. Pol11C2

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: uncultured Eubacteriaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Prochlorococcaceae cyanobacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: uncultured Planctomycetales bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Sulfurovaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Irkutsk Plague Control Research Institute of Siberia and Far East


ncbi_organism_name: Acidobacteriaceae bacterium


ncbi_organism_name: Marinilabiliaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Clostridium saudiense

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: uncultured Dehalococcoidaceae bacterium


ncbi_organism_name: Vulcanococcus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Ignavibacteriaceae bacterium


ncbi_organism_name: Kitasatospora indigofera

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Gaiellaceae bacterium


ncbi_organism_name: Dysosmobacter welbionis


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: National Institute of Biotechnology


ncbi_organism_name: uncultured Bradymonadales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Bradymonadales;x__environmental samples;s__uncultured Bradymonadales bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: bacterium 1xD42-87

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_strain_identifiers: K10 sum

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_assembly_name: freshwater MAG --- KT2_bin-177

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Nocardia nova


ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: Wall biofilm

ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Radboud University


ncbi_organism_name: Holosporaceae bacterium

ncbi_submitter: Universidad de Alicante


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Ireland

ncbi_isolation_source: Chard

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Salmonella, Shigella & Listeria Reference Laboratory


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Japan

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter suis

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Hong Kong

ncbi_isolation_source: anammox reactor

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Agricultural Research Service


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Bacillus sp. R-CC1

ncbi_submitter: Tshwane University of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. R-CC1


ncbi_organism_name: Escherichia coli

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: MD

ncbi_isolation_source: Dietary Supplements

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_organism_name: Chloroflexaceae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bifidobacterium dentium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: East China Normal University


ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Ghana: Kumasi

ncbi_isolation_source: WOUND SWAB

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_country: Russia: Moscow

ncbi_isolation_source: chilled salmon fillet

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_organism_name: Solirubrobacteraceae bacterium


ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Germany: Tuebingen

ncbi_isolation_source: Nasal cavity

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: Eberhard Karls Universitaet Tuebingen


ncbi_assembly_name: IMG-taxon 2675903138 annotated assembly

ncbi_organism_name: Micromonospora phaseoli

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: International Space Station

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: NASA Ames Research Center


ncbi_country: USA

ncbi_isolation_source: tomato

ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: Universidade de Sao Paulo


ncbi_country: China: Zhejiang

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: India: Orissa; Bhubaneswar; Atri

ncbi_isolation_source: Sediment

ncbi_organism_name: Thiomonas bhubaneswarensis

ncbi_submitter: Joint Genome Institute


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Corynebacterium aurimucosum


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Lujinxingiaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Brazil

ncbi_isolation_source: Homemade Mayonnaise

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_submitter: Massachusetts Institute of Technology


ncbi_assembly_name: freshwater MAG --- Loc090116-1m_bin-0087

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: United Kingdom

ncbi_isolation_source: Subacute bacterial endocarditis

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: University of Malaya


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Ramlibacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: California; Alameda County

ncbi_submitter: University of California, Berkeley


ncbi_country: Mozambique

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: USA: midwestern states

ncbi_isolation_source: root/leaf

ncbi_organism_name: Plantibacter sp. LMC-P-059a

ncbi_submitter: University of Chicago


ncbi_organism_name: Rothia kristinae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Jatrophihabitans sp.


ncbi_submitter: Australian Institute of Marine Science


ncbi_country: USA: WA

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002057