ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Contig

ncbi_isolate: Streptococcus mitis

ncbi_organism_name: Streptococcus mitis

ncbi_strain_identifiers: Streptococcus mitis

ncbi_submitter: UNIVERSITY COLLEGE LONDON


gtdb_representative: t

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Yersinia sp. Marseille-Q5920

ncbi_submitter: IHU - Mediterranee Infection

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__unclassified Yersinia (in: enterobacteria);s__Yersinia sp. Marseille-Q5920


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Xiamen University


gtdb_type_species_of_genus: t

ncbi_assembly_level: Complete Genome

ncbi_country: Malaysia: Kuala Lumpur

ncbi_organism_name: Formicincola oecophyllae

ncbi_refseq_category: reference genome

ncbi_submitter: University of Malaya

ncbi_type_material_designation: assembly from type material


ncbi_country: China

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_country: France

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira kirschneri;x__Leptospira kirschneri serovar Valbuzzi;x__Leptospira kirschneri serovar Valbuzzi str. 200702274


ncbi_organism_name: Klebsiella sp. 78106

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_organism_name: Plesiomonas shigelloides

ncbi_submitter: nankai university


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Germany

ncbi_isolation_source: raw fermented sausage

ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: mastitis

ncbi_organism_name: Escherichia coli

ncbi_submitter: KOlimastIR


ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Rikenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG605

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: CRC AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen people's hospital


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: uncultured Thermotogaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Metapseudomonas otitidis

ncbi_submitter: Bangladesh Council of Scientific and Industrial Research (BCSIR)


ncbi_submitter: Guangxi Medical University


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_assembly_level: Chromosome

ncbi_organism_name: uncultured Nitrincola sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Segatella sp.


ncbi_organism_name: Rhodococcus sp. NPDC058505

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. NPDC058505


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: LSHTM


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: uncultured Desulfobacterales bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Anaerotignum sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: University of Minnesota


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: marine metagenome


ncbi_country: Iran: Tehran

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Tehran

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Streptomyces griseosporeus


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli KTE101

ncbi_submitter: Broad Institute


ncbi_country: China: Qinghai

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: INRA


ncbi_isolation_source: healthy human vaginal cavity

ncbi_organism_name: Lactobacillus helveticus MTCC 5463

ncbi_strain_identifiers: MTCC 5463

ncbi_submitter: SMC College of Dairy Science, Anand Agricultural University, Anand


ncbi_country: Italy: Florence

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_organism_name: uncultured Mucispirillum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Brevundimonas vancanneytii

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Foggia


ncbi_country: USA: Decatur; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: Distal colon


ncbi_organism_name: Mucispirillum schaedleri ASF457


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Spain: Madrid

ncbi_isolation_source: hospital

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario La Paz


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Australia: Brisbane

ncbi_isolation_source: ear

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Russia: Moscow

ncbi_isolation_source: Duck salad without dressing

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: Switzerland: Lake Zurich

ncbi_isolation_source: freshwater lake; 5 m depth

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: Proximal colon


ncbi_organism_name: Micromonospora arborensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_isolation_source: human gut

ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Korea

ncbi_isolation_source: Imported chicken meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Candidatus Babeliales bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;x__unclassified Candidatus Babeliales;s__Candidatus Babeliales bacterium


ncbi_country: USA: Rochester; Minnesota

ncbi_isolation_source: Associated Infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The Mayo Clinic


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Streptococcus agalactiae FSL F2-343

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Shanghai Majorbio

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: China: Shandong

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Aggregatibacter segnis


ncbi_organism_name: Xanthomonas campestris pv. armoraciae

ncbi_strain_identifiers: WHRI 8093

ncbi_submitter: University of Exeter


ncbi_organism_name: Campylobacter sp.

ncbi_submitter: AAFC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Parabacteroides goldsteinii


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Spirochaetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;x__environmental samples;s__uncultured Spirochaetota bacterium


ncbi_country: Italy: Trento

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Sphingomonas sp. 3F27F9

ncbi_submitter: University of Trento


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University College Dublin


ncbi_country: USA:Los Angeles

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_country: China: Xiamen

ncbi_isolate: MAG Bin178

ncbi_isolation_source: activated sludge from lab-scale EBPR bioreactor; wastewater treatment plant

ncbi_organism_name: Propionivibrio sp.

ncbi_strain_identifiers: MAG Bin178

ncbi_submitter: Xiamen University


ncbi_country: China: Ningbo City

ncbi_isolation_source: sediment

ncbi_organism_name: Oricola nitratireducens

ncbi_submitter: Ningbo University


ncbi_organism_name: Anaplasma phagocytophilum

ncbi_submitter: ANSES


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_country: Cuba

ncbi_isolation_source: wound/abscess

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Clinic Heidelberg


ncbi_organism_name: Candidatus Roizmanbacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;x__unclassified Candidatus Roizmanbacteria;s__Candidatus Roizmanbacteria bacterium


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kansas State University


ncbi_country: Canada: Smith s Cove; Nova Scotia

ncbi_isolation_source: Clams

ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: Health Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_country: Mexico: Hidalgo

ncbi_isolation_source: Spanish-type chorizo

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: - Universidad Autonoma Metropolitana


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Succinatimonas sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Actinomyces oris

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Canada

ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Public Health Ontario laborato


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Trueperaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: DS-I Africa


ncbi_isolation_source: Urine

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Shimia marina

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Caecum

ncbi_organism_name: Lactobacillus intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_country: Egypt: Elsadat City; Menofia Governorate

ncbi_isolation_source: industrial zone

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Faculty of Agriculture, Cairo University


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Peru: Lima

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Synechococcus lacustris

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: Guangxi University


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University of Vienna


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Rectinema sp.

ncbi_submitter: University of Iowa


ncbi_country: China: Beijing

ncbi_isolation_source: oral sawb

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_country: New Zealand: South Island

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: The University of Queensland


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a 3.0 um filter

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Kandleria sp. UBA3656

ncbi_submitter: University of Queensland


ncbi_country: India: Kodungallur; Kerala

ncbi_isolation_source: shrimp

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Indian Institute of Technology Delhi


ncbi_country: China: Ningbo

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: SAR92 clade bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Salmonella sp. SKLX063365

ncbi_submitter: Zhejiang university


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Ruminobacter sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Vitreimonas sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: Ohio

ncbi_isolation_source: hospital shower hose biofilm

ncbi_organism_name: Blastomonas sp. CCH8-E1

ncbi_submitter: U.S. Environmental Protection Agency


ncbi_organism_name: Nocardioides sp.


ncbi_organism_name: Microcoleus sp. herbarium19

ncbi_submitter: Palacky University Olomouc


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Clostridium saudiense


ncbi_country: Germany: Hamburg

ncbi_isolation_source: groin swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Justus-Liebig-University Giessen


ncbi_organism_name: Escherichia coli

ncbi_submitter: Department of Genetics and Animal Breeding, Chattogram Veterinary and Animal Sciences University


ncbi_organism_name: uncultured Halobacteriovorax sp.


ncbi_country: Canada: Nunavut

ncbi_isolation_source: high Arctic cold saline sulfur spring anaerobic sediment

ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: McGill University


ncbi_country: China: Wenzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_country: China: Jiangsu

ncbi_isolation_source: rectum

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_country: Greece: Ierapetra; Crete

ncbi_organism_name: Pseudomonas corrugata

ncbi_submitter: Technological Educational Institute of Crete


ncbi_submitter: University of Wyoming


ncbi_country: China

ncbi_organism_name: Streptococcus suis TL13

ncbi_submitter: China animal health and epidemiology center


ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: saliva

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: IHU - Mediterranee Infection

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: fecal sample

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_country: Nigeria

ncbi_isolation_source: cattle stool (Bos taurus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Ealing


ncbi_country: USA: Pennsylvania; Pittsburgh

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_country: Colombia: Antioquia; Medellin

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Antioquia


ncbi_country: France

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium UBA1621

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1621


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: US Food and Drug Administration


ncbi_country: Mexico: Guadalajara

ncbi_isolation_source: wound


ncbi_country: Netherlands

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: USA: Georgia

ncbi_isolation_source: week A7 calf 163 isolate 2

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Food Animal Health and Mangement Program, University of Georgia


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: Xiamen University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Salinibacter sp.

ncbi_submitter: Montana State University


ncbi_country: Australia: Newcastle

ncbi_organism_name: Acetatifactor sp.


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: national research centre


ncbi_organism_name: Streptomyces sp. NBC_01012

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Elainellales cyanobacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Italy: Bresso; MI

ncbi_isolation_source: water

ncbi_organism_name: Legionella pneumophila serogroup 1

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: USA: CT

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Centro Universitario de la Cienega, Universidad de Guadalajara.


ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV131

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Silver Spring

ncbi_organism_name: Lachnospiraceae bacterium GAM79

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Belgium: Wallonia

ncbi_isolation_source: liver

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liege


ncbi_country: Hong Kong

ncbi_isolation_source: seawater at the outlet of a sandfilter in Port Shelter; Hong Kong SAR; China

ncbi_organism_name: Fangia hongkongensis FSC776 = DSM 21703

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Fastidiosibacteraceae;g__Fangia;s__Fangia hongkongensis;x__Fangia hongkongensis FSC776 = DSM 21703


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: marine

ncbi_organism_name: Afipia sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand: Bangkok

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Queensland


ncbi_country: China: AnShun; Guizhou

ncbi_isolation_source: 7d patty soil

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Peking university


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Psychrobacter glacincola

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pantoea ananatis

ncbi_submitter: Anhui Academy of Agricultural Sciences


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lachnospiraceae bacterium SGI.240

ncbi_submitter: University of Manitoba


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Ocean University of China


ncbi_organism_name: Bacillus cereus group sp. BceL035

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL035


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: PARUL UNIVERSITY


ncbi_organism_name: Yersinia pestis

ncbi_submitter: LLP "National Scientific Center of Especially Dangerous Infections named after Masgut Aikimbayev"


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Navamindradhiraj University


ncbi_organism_name: Blautia sp.


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Spirosoma sp.

ncbi_submitter: University of Fribourg


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Salmonella sp. NW891

ncbi_submitter: Sichuan University


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: freshwater MAG --- MJ120702A_bin-136

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Northeastern University


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: 0d patty soil

ncbi_submitter: Peking university


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Pleurocapsa sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolate: root of Talipariti tiliaceum

ncbi_organism_name: Streptomyces sp. YPW6

ncbi_strain_identifiers: bgisy055;root of Talipariti tiliaceum

ncbi_submitter: BGI Research


ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: EMG


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alistipes sp.


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Kenya

ncbi_organism_name: Clostridiales bacterium UBA7573

ncbi_submitter: University of Queensland


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_organism_name: Fidelibacterota bacterium


ncbi_isolation_source: mouse gut metagenome


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium longum


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain

ncbi_isolation_source: Fecal sample

ncbi_organism_name: Bifidobacterium santillanense

ncbi_submitter: University of Parma


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 6-175-07_S3_C2

ncbi_submitter: IGS


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 3201 hospital, Hanzhong


ncbi_submitter: Universiteit Gent


ncbi_country: Italy

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis


ncbi_country: Brazil

ncbi_isolation_source: nodules

ncbi_organism_name: Bradyrhizobium elkanii

ncbi_submitter: Brazil


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: Canada: Lacombe

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: Japan

ncbi_isolation_source: skin of face; 4 single-cells amplified by MDA combined with human skin metagenome reads

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: bioBiome, Inc.


ncbi_country: China

ncbi_isolation_source: Sichuan; China

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_assembly_name: IMG-taxon 2718217637 annotated assembly

ncbi_organism_name: Fulvimarina manganoxydans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Hopland; CA

ncbi_isolation_source: Avena fatua rhizosphere soil heavy density fraction time point 9 weeks

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Malaysia

ncbi_isolation_source: closed biodigester

ncbi_organism_name: Kosmotogaceae bacterium UBA1373


ncbi_country: Malawi

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Helicobacter sp. UBA3407

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_assembly_name: LM06-01023 assembly

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Bristol


ncbi_isolate: Blood

ncbi_organism_name: Bacillus anthracis

ncbi_strain_identifiers: Han;Blood

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_isolation_source: Human fecal samples

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: microbial pathogenic ecology group


ncbi_isolation_source: human stool

ncbi_submitter: Centers for Disease Control & Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 2010-1237


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Pseudoxanthomonas sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Candidatus Megaera venefica

ncbi_submitter: University of Pavia


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Thermodesulfovibrio sp.

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 34 - depth 258m

ncbi_submitter: King Abdullah University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__unclassified Fidelibacterota;s__Fidelibacterota bacterium REDSEA-S15_B10


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: EMG


ncbi_country: Russia

ncbi_isolation_source: cloacal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Monika Dolejska Antibiotic resistance group- UVPS


ncbi_country: Canada: British Columbia;Vancouver

ncbi_isolation_source: stool

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: China: Futian mangrove National Nature Reserve; Shenzhen

ncbi_isolation_source: mangrove sediment

ncbi_organism_name: Shewanella sp. AS16

ncbi_submitter: Jinan University


ncbi_country: Brazil: Petrolndia; PE

ncbi_isolation_source: bulbs

ncbi_organism_name: Burkholderia semiarida

ncbi_submitter: Universidade Federal Rural de Pernambuco


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_organism_name: uncultured Verrucomicrobiales bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: addis ababa university


ncbi_assembly_name: Rumen uncultured genome RUG551

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Hungatella sp. UBA4396

ncbi_submitter: University of Queensland


ncbi_organism_name: Peptoniphilus stercorisuis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Finland

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: University of Copenhagen


ncbi_country: Australia: Ulupna; NSW

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of California, Riverside

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: J. Craig Venter Institute


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Syntrophaceticus schinkii

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Thermoanaerobacterales;f__Thermoanaerobacterales Family III. Incertae Sedis;g__Syntrophaceticus;s__Syntrophaceticus schinkii


ncbi_submitter: Washington University in Saint Louis


ncbi_country: Thailand: Phatthalung

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: China: Anhui

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_country: Singapore: Jurong East

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Hyphomonas sp. UBA3601


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Solirubrobacterales bacterium


ncbi_country: China: Henan

ncbi_isolation_source: liver

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: NT

ncbi_submitter: SC


ncbi_organism_name: Pseudescherichia sp.


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Oceanobacter sp. 2_MG-2023

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Lebanon

ncbi_submitter: LAU


ncbi_isolation_source: soil

ncbi_organism_name: Chromobacterium amazonense

ncbi_submitter: BAS-USDA


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: University of Washington


ncbi_country: USA: Minnesota

ncbi_isolation_source: alfalfa sprouts from supermarket

ncbi_organism_name: Pantoea sp. RG18

ncbi_submitter: University of Minnesota


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: USA: IA

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Streptomyces sp. NBC_00063

ncbi_submitter: BGI Research


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Hellea sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Porphyromonadaceae bacterium UBA7173


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured Romboutsia sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: GIHE(Gyeonggi-do Institute of Health & Environment)


ncbi_organism_name: Campylobacter molothri

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: PAIRED

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MASINDE MULIRO UNIVERSITY OF SCIENCE AND TECHNOLOGY


ncbi_submitter: AGUASCALIENTES STATE LABORATORY LESP


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Northeastern University


ncbi_country: Russia: Western Siberia; Igrim gas condensate field

ncbi_isolation_source: A mixture of formation and condensation water extracted together with gas

ncbi_organism_name: Desulfofundulus salinus

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Harrisonbacteria bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Harrisoniibacteriota;x__unclassified Candidatus Harrisonbacteria;s__Candidatus Harrisonbacteria bacterium


ncbi_organism_name: Pseudomonas sp. Lb2C1-1

ncbi_submitter: LMU Munich


ncbi_submitter: University of Washington


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sphingobacteriaceae bacterium


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine sediment

ncbi_organism_name: Candidatus Glassbacteria bacterium

ncbi_submitter: University of Bergen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Glassiibacteriota;x__unclassified Candidatus Glassbacteria;s__Candidatus Glassbacteria bacterium


ncbi_country: Germany

ncbi_isolation_source: raw milk

ncbi_organism_name: Pseudomonas sp. WS 5021

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Shewanella sp. H8

ncbi_submitter: Ocean University Of China


ncbi_organism_name: Ehrlichia ruminantium str. Welgevonden

ncbi_strain_identifiers: Welgevonden

ncbi_submitter: University of Pretoria, South Africa


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine culture

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Baltic Sea: Landsort Deep

ncbi_isolation_source: surface water

ncbi_organism_name: Rhodopseudomonas palustris

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Blautia producta


ncbi_isolation_source: Urine

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Salisediminibacterium halotolerans

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: University of Michigan Medical School

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_organism_name: Sphingobium yanoikuyae

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Arcadia; Florida

ncbi_organism_name: Blattabacterium cuenoti

ncbi_strain_identifiers: EPILAmay

ncbi_submitter: Okinawa Institute of Science and Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 5-63 micron fraction

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: California; Bitney Springs

ncbi_isolation_source: fresh water

ncbi_organism_name: Aquitalea aquatica

ncbi_submitter: Sierra College


ncbi_assembly_name: freshwater MAG --- Umea2p1_bin-1081

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Sponge: Aplysina aerophoba

ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Streptococcus sp. 27098_8_134

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_organism_name: Streptomyces sp. NPDC089799

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom: London

ncbi_isolation_source: Rectum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nottingham Trent University


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Nitratireductor aquimarinus

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Oscillospiraceae bacterium 38-13

ncbi_submitter: Nanjing University


ncbi_country: USA: Texas College Station

ncbi_isolation_source: Identified as lab contaminant that had potent inhibitory activity against human pathogenic bacteria

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Texas A&M


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Aminobacterium sp.

ncbi_submitter: University of Iowa


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Haruko Takeyama Lab., Waseda University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_assembly_name: PMEN

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Atopobium sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: uncultured Slackia sp.

ncbi_submitter: EBI


ncbi_country: Indonesia: Bali

ncbi_submitter: Max von Pettenkofer-Institute


ncbi_organism_name: Maribacter dokdonensis

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Russia

ncbi_isolation_source: cloacal sample

ncbi_submitter: Monika Dolejska Antibiotic resistance group- UVPS


ncbi_isolation_source: intestinal content

ncbi_organism_name: Alistipes sp.

ncbi_submitter: ChinaCDC


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_strain_identifiers: NRRL B-1477

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Kitasatosporales;f__Streptomycetaceae;g__Streptomyces;x__Streptomyces violaceusniger group;s__Streptomyces hygroscopicus;sb__Streptomyces hygroscopicus subsp. hygroscopicus


ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Shewanella vaxholmensis

ncbi_submitter: Karolinska Institutet


ncbi_country: Austria: Pichlinger See

ncbi_isolation_source: freshwater

ncbi_organism_name: Novosphingobium sp. SL115

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: EMG


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Lactiplantibacillus mudanjiangensis

ncbi_submitter: Northeast Agricultural University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan hospital


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Panama: Bocas del Toro; STRI Point

ncbi_isolation_source: sponge tissue

ncbi_organism_name: bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Anaerobutyricum soehngenii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Pseudomonas sp. 10(2024)

ncbi_submitter: Willamette University


ncbi_organism_name: Streptomyces lividans

ncbi_strain_identifiers: TK24 YA8 DG2-P41

ncbi_submitter: Uni Bielefeld


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Universidade Federal do Rio Grande do Norte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Salinicoccus sp. HZC-1

ncbi_submitter: guizhou university


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured Polyangiaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__environmental samples;s__uncultured Candidatus Rokubacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_organism_name: Pseudomonas tritici

ncbi_submitter: Universidade Federal do Rio de Janeiro (UFRJ)


ncbi_isolate: AOP42_A1_surf _bin _5

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_strain_identifiers: AOP42_A1_surf _bin _5

ncbi_submitter: Genoscope


ncbi_organism_name: Segatella copri


ncbi_organism_name: Aeromonas media

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: University of California Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_country: Brazil: Belem

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Bacillota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- LaPlata-15m-a_bin-483

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: INRA


ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Salmonella sp. 741265120_PSA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Salmonella sp. s58313

ncbi_submitter: Zhejiang university


ncbi_country: Canada: North Alberta

ncbi_isolation_source: Suncor tailing pond sample

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium UBA4813


ncbi_country: China: Dexing Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Bacillus safensis

ncbi_submitter: University of Lagos


ncbi_country: Uganda: Stanley glacier

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S5

ncbi_organism_name: Blautia sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Romania

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis 1755BN

ncbi_submitter: Broad Institute


ncbi_country: Canada: Guelph

ncbi_isolation_source: Dry seeds

ncbi_organism_name: Paenibacillus sp. EKM101P

ncbi_submitter: University of Guelph


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: USA: Buffalo; NY

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_organism_name: Haliea sp.

ncbi_submitter: Handley Lab, University of Auckland


ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Shigella sp. FC6554

ncbi_submitter: Ministry of Science and Technology of China


ncbi_country: Italy

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Southampton


ncbi_country: USA: Florida

ncbi_isolation_source: watercress

ncbi_organism_name: Xanthomonas floridensis

ncbi_strain_identifiers: WHRI 8848

ncbi_submitter: University of Exeter


ncbi_assembly_name: freshwater MAG --- MJ130820A_bin-077

ncbi_organism_name: uncultured Rhodanobacter sp.

ncbi_submitter: BILS


ncbi_isolation_source: Proximal colon


ncbi_country: USA: IL

ncbi_isolation_source: soil

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: INRAE


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Candidatus Bartonella washoeensis

ncbi_submitter: SC


ncbi_isolation_source: nasopharynx


ncbi_country: USA: Texas

ncbi_isolation_source: bovine peripheral lymph node

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Lubbock


ncbi_isolation_source: Ashadze hydrothermal field of Mid Atlantic Ridge

ncbi_organism_name: Deferribacter autotrophicus

ncbi_submitter: Winogradsky Institute of Microbiology


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Seawater

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: marine college, shandong university


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater influent sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Bristol


ncbi_isolation_source: stool

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Russia: Saint-Petersburg

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Federal State Budgetary Scientific Institution "Institute of Experimental Medicine"


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_submitter: University of Pittsburgh


ncbi_country: Brazil

ncbi_submitter: School of Veterinary Medicine and Animal Science, University of Sao Paulo


ncbi_country: Brazil: Seropedica

ncbi_isolation_source: surface desinfected roots

ncbi_organism_name: Bradyrhizobium sp. BR 10261

ncbi_submitter: Embrapa Agrobiologia


ncbi_organism_name: Chitinophaga sp.

ncbi_submitter: Guangxi University


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Prochlorococcus sp. ALOHA_A2.0_50

ncbi_submitter: SCOPE


ncbi_country: Canada: Mont-Saint-Hilaire (QC)

ncbi_isolation_source: tree leaf surface

ncbi_organism_name: Methylobacterium sp. J-068

ncbi_submitter: Universite du Quebec a Montreal


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD18320

ncbi_submitter: Broad Institute


ncbi_isolation_source: Colon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Anderseniella sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: USA

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Henan

ncbi_isolation_source: liver

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: China: Guangdong

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Liaocheng University


ncbi_country: Italy

ncbi_isolation_source: Fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Parma


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_country: Canada: London Research and Development Centre Ontario

ncbi_isolation_source: Soil samples from resarch farm

ncbi_organism_name: Pseudomonas azotoformans

ncbi_submitter: Agriculture and Agri-Food Canada and University of Western Ontario


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Mahidol University


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: EMG


ncbi_country: USA: WA; Seattle

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Amylibacter sp.

ncbi_submitter: Universidad Andres Bello


ncbi_submitter: Sanger Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819


ncbi_assembly_name: freshwater MAG --- MJ130729B_bin-316

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Nebraska

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UNMC


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Holdemanella biformis

ncbi_submitter: European Bioinformatics Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater influent sample

ncbi_organism_name: Enterobacter sp. RHBSTW-00131

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Marinicella litoralis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: jiangnan


ncbi_country: France

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: Germany

ncbi_isolation_source: Shrimps

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: uncultured Yeosuana sp.


ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium MD308

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: mouse bloode sample

ncbi_organism_name: Bacillus mojavensis

ncbi_submitter: University of Pretoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus mojavensis


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_country: Australia: Brisbane

ncbi_isolation_source: urinary tract infection

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Pakistan

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Desulfobulbaceae bacterium


ncbi_organism_name: Halomonas alkaliantarctica

ncbi_strain_identifiers: CRSS


ncbi_assembly_name: Rumen uncultured genome RUG11777

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces from breast-fed infant

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: UMass Amherst


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Proteus vulgaris

ncbi_submitter: Washington University


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut

ncbi_organism_name: Oscillibacter sp. ER4

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Washington


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Bartonella heixiaziensis

ncbi_submitter: University of Salford


ncbi_organism_name: Singulisphaera sp. GP187


ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: Sil RS 12

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: China: Nantong

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Jiangsu Provincial Center for Disease Prevention and Control,China


ncbi_organism_name: Neisseria lactamica

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Pseudomonas syringae

ncbi_strain_identifiers: CFBP 2116

ncbi_submitter: JLU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Bacillus licheniformis

ncbi_strain_identifiers: MPF 67

ncbi_submitter: Jet Propulsion Laboratory


ncbi_isolate: Fecal samples

ncbi_isolation_source: LBC

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University


ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: SurvCARE


ncbi_country: France: Brest

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: spacecraft surface

ncbi_organism_name: Fictibacillus phosphorivorans

ncbi_strain_identifiers: AMY 19.1.2 vial 1


ncbi_country: France: Morvan

ncbi_isolation_source: soil

ncbi_organism_name: Caballeronia mineralivorans PML1(12)

ncbi_submitter: CNRS


ncbi_country: Canada: Toronto

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_organism_name: Alicyclobacillus acidiphilus NBRC 100859

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Streptobacillus moniliformis

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Pectobacterium carotovorum

ncbi_submitter: Cornell University


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Veillonellaceae bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom: England

ncbi_isolation_source: Tissue right fore d5

ncbi_submitter: University of Liverpool


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Ibadan


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: University of Calgary


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: Seawater

ncbi_organism_name: Spongiibacter sp. IMCC21906

ncbi_submitter: Inha University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Brazil

ncbi_isolation_source: oropharynx

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_country: Norway

ncbi_isolation_source: Ulcer

ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: China: Baise

ncbi_isolation_source: Patients with gastritis or gastric ulcer examined with a gastroscope at People s Hospital; Bama County

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: BGI


ncbi_assembly_name: De novo assembly of KCRI isolate RDK01_164C

ncbi_isolation_source: wound swab sample

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_country: USA: Atlanta; GA

ncbi_isolation_source: sputum

ncbi_submitter: Emory University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: Toho university


ncbi_assembly_name: AR1.6_2 Medusa

ncbi_organism_name: Methylorubrum populi

ncbi_submitter: Instituto de Quimica


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Udmurt Republic

ncbi_isolation_source: groundwater

ncbi_organism_name: Sulfuricaulis sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis NM3222

ncbi_submitter: IGS


ncbi_organism_name: Kingella denitrificans

ncbi_submitter: EMG


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: NWAFU


ncbi_country: Australia: Melbourne

ncbi_isolation_source: blood

ncbi_organism_name: Serratia nevei

ncbi_submitter: Monash University


ncbi_isolation_source: acid mine drainage

ncbi_organism_name: Acidithiobacillus ferrivorans

ncbi_submitter: Heilongjiang Bayi Agricultural University


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Candidatus Neomicrothrix sp. UBA1329

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp. UBA1329


ncbi_country: Belgium

ncbi_isolation_source: Sporocarp

ncbi_organism_name: Pseudomonas tolaasii

ncbi_submitter: Centre of Microbial and Plant Genetics


ncbi_country: Germany

ncbi_submitter: Robert Koch Institute


ncbi_country: Canada

ncbi_isolation_source: Cecal

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Pfizer


ncbi_assembly_name: freshwater MAG --- Umea_bin-00968

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


ncbi_country: Switzerland

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Kansas State University


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Linnaeus University


ncbi_assembly_name: freshwater MAG --- KT1_bin-524

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Ruminococcus sp. LCP21S3_E8

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Weifang People's Hospital


ncbi_isolate: AOP24_C2_surf _bin _10

ncbi_organism_name: Psychrobacter celer

ncbi_strain_identifiers: AOP24_C2_surf _bin _10

ncbi_submitter: Genoscope


ncbi_submitter: Chirstian Medical College


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Acinetobacter sp. P1332

ncbi_submitter: Fuzhou University


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Morganella sp. Je.2.23

ncbi_submitter: Center of Biotechnology of Borj Cedria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Morganella;x__unclassified Morganella (in: enterobacteria);s__Morganella sp. Je.2.23


ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: Teagasc


ncbi_organism_name: Salmonella sp. NW312

ncbi_submitter: Sichuan University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: uncultured Lentisphaerales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: University of Dhaka


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Bryobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: uncultured Ohtaekwangia sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Gemmiger formicilis


ncbi_organism_name: uncultured Bifidobacterium sp.


ncbi_organism_name: Rhizobium leguminosarum

ncbi_strain_identifiers: USDA-ARS 2316

ncbi_submitter: University of Pittsburgh


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium


ncbi_isolation_source: Sponge: Petrosia ficiformis

ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Actinomycetota bacterium


ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA: California; Lake County

ncbi_isolation_source: sediments of a seasonal vernal pool


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Tsinghua university


ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: Azonexus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Paenibacillus sp. NRS-1781

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Absconditibacteriota;o__Candidatus Absconditabacterales;x__unclassified Candidatus Absconditabacterales;s__Candidatus Absconditabacterales bacterium


ncbi_organism_name: Cetobacterium sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad de Concepcion


ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: HANYANG UNIVERSITY


ncbi_organism_name: Firmicutes bacterium AM55-24TS

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium AM55-24TS


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: USA: Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_submitter: Colorado State University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: TX

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_organism_name: Treponema sp.


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Klebsiella aerogenes

ncbi_strain_identifiers: FDAARGOS 1441

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Priestia megaterium


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pakistan

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Italy: not applicable

ncbi_isolation_source: sea

ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Croatian Veterinary Institute


ncbi_country: USA

ncbi_organism_name: Bordetella pertussis CHLA-11

ncbi_submitter: JCVI


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: equine placenta

ncbi_organism_name: Amycolatopsis pretoriensis

ncbi_submitter: USDA/ARS/NCAUR


ncbi_isolation_source: salad

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_organism_name: bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Nimes University Hospital


ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_organism_name: Erysipelotrichaceae bacterium


ncbi_organism_name: Streptococcus cristatus

ncbi_submitter: University of Washington


ncbi_country: Russia

ncbi_isolation_source: vaginal-cervical fluid

ncbi_submitter: Federal Research Center of Virology and Microbiology, Branch in Saratov

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: concordia university


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus SCLE6005

ncbi_submitter: Broad Institute


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Aerococcus mictus

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Dialister invisus

ncbi_submitter: EMG


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Ireland

ncbi_isolation_source: seafood factory FBO1

ncbi_submitter: National University of Ireland, Galway


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain: Tous reservoir; Valencia

ncbi_isolation_source: freshwater reservoir from 25 m depth

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Acinetobacter sp. USHLN143

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Washington University


ncbi_country: Malaysia: Bidong Island; Terengganu

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: Monash University Malaysia


ncbi_organism_name: Aliivibrio wodanis

ncbi_submitter: University of Tromso


ncbi_country: South Africa

ncbi_organism_name: Bradyrhizobium brasilense

ncbi_submitter: University of Pretoria


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Center for Nuclear Energy in Agriculture - University of Sao Paulo


ncbi_organism_name: Borreliella garinii

ncbi_strain_identifiers: PMe

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: USA: Vidalia Region; GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Germany

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Microbacterium sp. MMO-23


ncbi_country: USA: Minnesota

ncbi_organism_name: Mycobacterium avium 09-5983

ncbi_submitter: National Animal Disease Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;x__Mycobacterium avium 09-5983


ncbi_country: USA: PA

ncbi_isolation_source: bovine cow spleen

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: no molasses with increasing thiocyanate

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_country: Uganda

ncbi_organism_name: Mycolicibacterium conceptionense

ncbi_submitter: JCVI


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Public Health England


ncbi_country: China: Panyu

ncbi_submitter: Guangzhou Medical University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Tokyo Institute of Technology


ncbi_country: Switzerland: Bern

ncbi_isolation_source: Forehead

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Inselspital, Bern University Hospital


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudolactococcus laudensis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_country: Colombia

ncbi_organism_name: Staphylococcus aureus DAR5800

ncbi_submitter: Broad Institute


ncbi_isolation_source: Human feces

ncbi_organism_name: Veillonella sp. LMAG:29

ncbi_submitter: The University of Tokyo


ncbi_country: Canada: Alberta

ncbi_isolation_source: Elbow

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: National Microbiology Laboratory


ncbi_strain_identifiers: Purdue

ncbi_submitter: Purdue University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;s__Candidatus Mycoplasma haematolamae;x__Candidatus Mycoplasma haematolamae str. Purdue