ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_assembly_name: freshwater MAG --- Loc090402-8m_bin-1456

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: USA

ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_assembly_level: Scaffold

ncbi_country: Singapore

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Temasek Life Sciences Laboratory Limited


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_country: USA: Bronx; NY

ncbi_isolation_source: throat swab

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Shigella sp. FC6485

ncbi_submitter: Ministry of Science and Technology of China


ncbi_organism_name: Escherichia coli STEC_94C

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Oman

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: Sultan Qaboos University


ncbi_country: South Korea

ncbi_isolation_source: fermented seafood

ncbi_organism_name: Metabacillus indicus

ncbi_submitter: GCAT-SEEK

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Escherichia coli KTE2

ncbi_submitter: Broad Institute


ncbi_submitter: Institute for Clinical Pathology and Medical Research


ncbi_country: China: Shandong; Jinan

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong university


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx


ncbi_country: Colombia: Atlantico

ncbi_isolation_source: Continental water

ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: Center for Bioinformatics and Computational Biology of Colombia BIOS


ncbi_isolation_source: animal feed; soybean meal

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 311387-1


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Huashan Hospital


ncbi_organism_name: Caballeronia glebae

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Case Western Reserve University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Vampirovibrio sp.

ncbi_submitter: Insytitute of microbiology and epidemiology


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: Pittsburgh; PA

ncbi_isolation_source: Clinical patient

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Pittsburgh Bacteriophage Institute


ncbi_organism_name: Neisseria flavescens

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus infantarius


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


gtdb_representative: t

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_assembly_name: BAL 062 Assembly

ncbi_isolate: BAL 062

ncbi_isolation_source: clinical sample

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: BAL 062

ncbi_submitter: LSHTM


ncbi_organism_name: Liquorilactobacillus nagelii

ncbi_submitter: Teagasc


ncbi_assembly_level: Complete Genome

ncbi_country: Czech Republic: Brno

ncbi_isolation_source: human; urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_isolation_source: supermarket

ncbi_submitter: SCELSE, Nanyang Technological University, Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_submitter: Quadram Institutte


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: West China Hospital, Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: chelonian

ncbi_organism_name: Campylobacter fetus subsp. testudinum

ncbi_submitter: Utrecht University


ncbi_organism_name: Odoribacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: Portland State University


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Farm workers

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_organism_name: Halalkalibacter akibai JCM 9157

ncbi_refseq_category: reference genome

ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Halalkalibacter;s__Halalkalibacter akibai;x__Halalkalibacter akibai JCM 9157

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Research Institute for Tropical Medicine


ncbi_organism_name: Spongiibacteraceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Burkholderiaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Colon


ncbi_country: China: Tangshan

ncbi_isolation_source: stem rot potato plant

ncbi_organism_name: Pectobacterium parvum

ncbi_submitter: Hebei Agricultural University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: China agricultural university


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_organism_name: Streptomyces eurythermus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Photorhabdus australis DSM 17609

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Aurantiacibacter hainanensis

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: Chesapeake Bay

ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Clemson University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Nocardiopsis alba


ncbi_isolate: VTEC

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: ISTITUTO SUPERIORE DI SANITA


ncbi_country: USA: NY

ncbi_isolation_source: water

ncbi_submitter: New York State Dept. of Health - Wadsworth Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Give


ncbi_organism_name: Edwardsiella anguillarum

ncbi_submitter: National Pingtung University of Science and Technology


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-2631

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_country: South Korea: Lake Soyang

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinobacteria bacterium IMCC26207

ncbi_submitter: Inha University


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Netherlands: Utrecht

ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Utrecht University


ncbi_country: Brazil: Riachao; Maranhaeo Sate

ncbi_isolation_source: mouse blood from experimental transmission feeding

ncbi_organism_name: Borrelia venezuelensis

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: Bacillus altitudinis


ncbi_country: Romania

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis 2233BH

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut

ncbi_organism_name: Alistipes putredinis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Streptomyces cellulosae

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Fretibacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Germany: Hesse; Gross-Gerau

ncbi_isolation_source: rectal swab

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Justus-Liebig-University Giessen


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Belgium

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolate: AOP1_H1_surf _bin _17

ncbi_organism_name: Microbacterium gubbeenense

ncbi_strain_identifiers: AOP1_H1_surf _bin _17

ncbi_submitter: Genoscope


ncbi_organism_name: Mesomycoplasma hyorhinis GDL-1

ncbi_submitter: University of Missouri


ncbi_organism_name: Cronobacter turicensis


ncbi_strain_identifiers: BVAF

ncbi_submitter: Josephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__ant endosymbionts;g__Candidatus Blochmanniella;s__Candidatus Blochmanniella vafra;x__Candidatus Blochmanniella vafra str. BVAF


ncbi_country: China: Beijing

ncbi_organism_name: Christensenella tenuis

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_country: USA: FL

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Enterobacter sp. GM-22

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Streptomyces sp. NPDC046976

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Brazil:Conceicao do Araguaia

ncbi_isolation_source: Cervical ligament and lymph node

ncbi_organism_name: Brucella abortus

ncbi_submitter: Universidade Federal de Lavras


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: East China Normal University


ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Endomicrobiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Plantibacter sp. YIM 135347

ncbi_submitter: Chenggong Campus of Yunnan University


ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: Monash University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: wastewater

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_submitter: ProteonPharmaceuticals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


gtdb_type_species_of_genus: t

ncbi_country: Indian Ocean

ncbi_isolation_source: sediment

ncbi_organism_name: Salidesulfovibrio onnuriiensis

ncbi_submitter: Korea Institute of Ocean Science and Technology


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Microbacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Amesiibacteriota;s__Candidatus Amesbacteria bacterium GW2011_GWC1_47_15


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer sampled inside a natural surface slick

ncbi_organism_name: SAR86 cluster bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium


ncbi_country: Honduras: Copan

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Clostridium saccharobutylicum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Ningbo

ncbi_isolation_source: urine

ncbi_submitter: Ningbo First Hospital


ncbi_organism_name: Streptococcus sp. ST16

ncbi_submitter: Ming Chuan University


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Harvard University


ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Desulfonatronovibrio sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Fimbriimonadaceae bacterium


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_organism_name: uncultured Ottowia sp.

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Elusimicrobium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Poona

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sclerotialus

ncbi_strain_identifiers: NRRL ISP-5269

ncbi_submitter: University of Illinois


ncbi_organism_name: Mycobacterium sp. 663a-19

ncbi_submitter: INRAE


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Woeseiaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Nottingham


ncbi_organism_name: Prevotellamassilia timonensis


ncbi_organism_name: uncultured Balneolaceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;x__environmental samples;s__uncultured Balneolaceae bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Kyungpook National University


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Ruminobacter sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Pseudomonas rhodesiae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Flavobacterium frigoris

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: uncultured Bacteriovoracaceae bacterium


ncbi_organism_name: uncultured Phycisphaeraceae bacterium


ncbi_organism_name: Photobacterium sanguinicancri

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Salmonella sp. ZJHZ19_0081

ncbi_submitter: Zhejiang university


ncbi_organism_name: Coprococcus sp.


ncbi_organism_name: Endozoicomonadaceae bacterium


ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: Isfahan University of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_organism_name: Salmonella sp. SKLX089468


ncbi_organism_name: uncultured Rhizobium sp.


ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Candidatus Babeliales bacterium

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;x__unclassified Candidatus Babeliales;s__Candidatus Babeliales bacterium


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: uncultured Desulfosporosinus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Institut Pasteur of Madagascar


ncbi_organism_name: Yokenella regensburgei

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Candidatus Planktophila sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__environmental samples;s__uncultured Candidatus Planktophila sp.


ncbi_organism_name: Bacilli bacterium


ncbi_country: China

ncbi_isolation_source: pork

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Diaphorobacter nitroreducens


ncbi_country: South Korea

ncbi_isolation_source: Retail raw chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Seoul National University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Agathobacter sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Brevundimonas diminuta

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: Lake Hazen

ncbi_isolation_source: sediment

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Ottawa


ncbi_country: New Caledonia

ncbi_organism_name: Leptospira hartskeerlii

ncbi_submitter: Institut Pasteur Montevideo


ncbi_country: China: Shanghai

ncbi_isolation_source: anammox sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: East China of university of science and technolongy


ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Coproplasma;s__Candidatus Coproplasma excrementigallinarum


ncbi_organism_name: Sphaerochaeta sp.


ncbi_organism_name: Candidatus Limnocylindrus sp.

ncbi_submitter: University of Duisburg Essen

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;x__unclassified Candidatus Limnocylindrus;s__Candidatus Limnocylindrus sp.


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National Institute of Health, Portugal


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Synechococcus sp.


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Phaeobacter sp. NW0010-22

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NITE)


ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: UNIVERSITY TOULOUSE III


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: N

ncbi_submitter: SC


ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Norway

ncbi_isolation_source: Phleum pratense

ncbi_organism_name: Xanthomonas graminis pv. phlei

ncbi_submitter: CEBITEC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas graminis;x__Xanthomonas graminis pv. phlei

ncbi_type_material_designation: assembly from pathotype material


ncbi_isolation_source: terrestrial

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Canada

ncbi_isolation_source: Imported/domestic retail mollusks (unspecified)

ncbi_organism_name: Vibrio metoecus

ncbi_submitter: Health Canada


ncbi_organism_name: Salmonella bongori serovar 48:z35:-

ncbi_submitter: University of California at Davis


ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: The Federal Research Centre "Fundamentals of Biotechnology" of the Russian Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Newcastle

ncbi_organism_name: Blautia wexlerae


ncbi_organism_name: Veillonellaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Bethesda

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: Uganda: Bwera General Hospital

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: oxic seawater

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_assembly_name: Rumen uncultured genome RUG10530

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Lactococcus sp.


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-raw water

ncbi_organism_name: Anaerolinea sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Halomonas sp. HMF6819

ncbi_submitter: Hankuk University of Foreign Studies


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Minnesota


ncbi_isolation_source: marine environment

ncbi_submitter: IMR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: USA: North Carolina

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M110S1

ncbi_submitter: Universite de Montreal


ncbi_country: USA: California; Los Angeles County

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Dialister sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Australia

ncbi_organism_name: Mesorhizobium loti

ncbi_submitter: Curtin University


ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp. HMSC19D02

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: SC


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS KAN-29

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: SZAS KAN-29

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Salmonella sp. C3208

ncbi_submitter: Sichuan University


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oldenburg


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Portland State University


ncbi_submitter: University of Bern


ncbi_assembly_name: freshwater MAG --- AM_bin-2502

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Rothia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_country: Canada: Toronto

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_country: Colombia

ncbi_isolation_source: xylem

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: UC Davis


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Sphaerochaeta associata

ncbi_submitter: University of Iowa


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_submitter: SurvCARE


ncbi_country: USA

ncbi_isolation_source: Tidal pool

ncbi_organism_name: Synechocystis sp. PCC 7338

ncbi_submitter: KAIST


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Micromonospora zamorensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Hengyang

ncbi_isolation_source: bile

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Hengyang Medical School, University of South China


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad de Sonora


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Alistipes shahii

ncbi_submitter: EMG


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: Boston; MA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus M0299

ncbi_submitter: Broad Institute


ncbi_submitter: Institut Pasteur de Dakar

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: Hong Kong

ncbi_isolation_source: water

ncbi_organism_name: Flavobacteriaceae bacterium UBA5535

ncbi_submitter: University of Queensland


ncbi_organism_name: Chlamydia trachomatis D-EC

ncbi_strain_identifiers: D-EC

ncbi_submitter: Integrated Genomics, Inc.


ncbi_organism_name: Bacillus sp. JJ1127

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. JJ1127


ncbi_organism_name: Arthrobacter sp. UYP6


ncbi_country: USA: California

ncbi_isolation_source: genital swab

ncbi_organism_name: Mycoplasma miroungigenitalium

ncbi_submitter: US FDA


ncbi_submitter: United States Department of Agriculture


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human skin

ncbi_organism_name: Dialister invisus

ncbi_submitter: NIH/NHGRI


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Guangdong

ncbi_isolation_source: Acid mine drainage

ncbi_organism_name: Acidithiobacillus ferrooxidans

ncbi_strain_identifiers: GD-B

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Thailand: Phitsanulok

ncbi_organism_name: Escherichia coli

ncbi_submitter: Cardiff University


ncbi_country: Italy

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Polytechnic University of Marche Medical School


ncbi_organism_name: uncultured Gardnerella sp.


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: China: Beijing

ncbi_isolation_source: Retroperitoneum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University College London (UCL)


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Hangzhou

ncbi_isolation_source: anal swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: New York

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Guangxi University


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: swab

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Serratia marcescens

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_country: France: Feucherolles

ncbi_isolation_source: horse manure

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: UMR5557, University of Lyon


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: Brown University


ncbi_country: South Africa

ncbi_isolation_source: root tissues

ncbi_organism_name: Pseudomonas carnis

ncbi_strain_identifiers: NWU Be30

ncbi_submitter: North-West University


ncbi_organism_name: Pseudomonas koreensis

ncbi_submitter: College of Resources and Environmental science


ncbi_isolation_source: stream water

ncbi_organism_name: Duganella aquatilis

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; Guaymas Basin; Black smoker hydrothermal vent

ncbi_isolation_source: marine hydrothermal chimney wall TVG10

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Chicken fecal

ncbi_submitter: China CDC


ncbi_country: Pakistan: Arabian Sea; Karachi

ncbi_isolation_source: marine sediment

ncbi_organism_name: Salinicoccus roseus

ncbi_submitter: Quaid-i-Azam University, Islamabad


ncbi_country: Portugal

ncbi_isolation_source: Feces

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Universidade do Algarve


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: BGI


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: Canada: Lacombe

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Thermanaerovibrio acidaminovorans

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Pseudomonas synxantha

ncbi_submitter: Biology Centre CAS


ncbi_submitter: General Hospital


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_35_21


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: South Korea: Taean County

ncbi_isolation_source: oil-contaminated tidal sediment

ncbi_organism_name: Alloalcanivorax gelatiniphagus

ncbi_strain_identifiers: MEBiC 08158

ncbi_submitter: Korea Institute of Ocean Science and Technology


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sheffield


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: University of Georgia


ncbi_country: Luxembourg: Schifflange

ncbi_isolation_source: water

ncbi_organism_name: Rhodoferax sp. UBA4127

ncbi_submitter: University of Queensland


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_submitter: Medical Mycology Research Center


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Arthrobacter sp. ISL-85

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_country: Brazil

ncbi_isolation_source: soil

ncbi_organism_name: Nocardia cerradoensis

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_organism_name: Planctomycetaceae bacterium UBA4732


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Veillonellaceae bacterium

ncbi_submitter: EBI


ncbi_country: USA

ncbi_submitter: University of Michigan Medical School

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium intracellulare;sb__Mycobacterium intracellulare subsp. chimaera


ncbi_country: Japan

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Bern


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: addis ababa university


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus W51776

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_submitter: Center for Microbial Communities


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Bacillus cereus group sp. BceL138

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL138


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Guangzhou University of Traditional Chinese Medicine


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Caldicoprobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Haloferula sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Mycolicibacter sinensis


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Leptospirales bacterium


ncbi_submitter: the First Affiliated Hospital of Guangzhou Medical University


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_organism_name: Planctomyces sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Sulfurospirillum sp.

ncbi_submitter: CNRS UMR6197


ncbi_organism_name: Escherichia coli

ncbi_submitter: Univerza v Ljubljani, Biotehniska fakulteta


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of South Africa


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Aquincola sp. GCM10022187

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: INRA


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_assembly_level: Chromosome

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_isolate: SPRUCE 394

ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_strain_identifiers: SPRUCE 394

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: University of Veterinary Sciences


ncbi_organism_name: Candidatus Limivicinus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limivicinus;x__unclassified Candidatus Limivicinus;s__Candidatus Limivicinus sp.


ncbi_organism_name: uncultured Granulicella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Roseibium sp.


ncbi_organism_name: Candidatus Brocadiia bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;x__unclassified Candidatus Brocadiia;s__Candidatus Brocadiia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: Prochlorococcus sp.

ncbi_submitter: Dekas Lab, Stanford University


ncbi_country: USA: California; Modesto

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: IA

ncbi_isolation_source: root

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA:Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: bacterium 1xD42-87

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Shigella flexneri 2a str. 301

ncbi_submitter: Microbial Genome Center of ChMPH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Shigella;s__Shigella flexneri;x__Shigella flexneri 2a;x__Shigella flexneri 2a str. 301


ncbi_organism_name: Dyella agri

ncbi_submitter: SUN YAT-SEN UNIVERSITY


ncbi_organism_name: Enterococcus faecalis EnGen0299

ncbi_submitter: Broad Institute


ncbi_organism_name: Sphingobacterium multivorum


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Hallerella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: midwestern states

ncbi_isolation_source: root/leaf

ncbi_organism_name: Pseudarthrobacter sp. MEB009

ncbi_submitter: University of Chicago


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: CAU


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Shandong First Medical University


ncbi_country: Germany

ncbi_organism_name: Candidatus Enterococcus mansonii


ncbi_country: USA: International Space Station

ncbi_isolation_source: air

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NASA Ames Research Center


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Sutterella sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_country: Taiwan: Meinong District; Kaohsiung

ncbi_isolation_source: mustard pickles

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: National Yang Ming University


ncbi_organism_name: Bacteroides rodentium JCM 16496

ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides rodentium;x__Bacteroides rodentium JCM 16496


ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: Toho University


ncbi_country: USA: MN

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Kocuria palustris

ncbi_submitter: BGI


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Pseudokineococcus sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Montreal


ncbi_assembly_name: Rumen uncultured genome RUG12942

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Fretibacterium sp.

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_isolation_source: bioreactor under electrogenic and nitrate-reducing conditions

ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: Radboud University


ncbi_country: USA

ncbi_isolation_source: CANDO+P Bioreactor

ncbi_organism_name: Myxococcus sp.

ncbi_submitter: Northwestern University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Jinan

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: University College London (UCL)


ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: State College; PA

ncbi_isolation_source: wild caught Drosophila melanogaster hemolymph

ncbi_organism_name: Providencia rettgeri Dmel1

ncbi_submitter: Cornell University


ncbi_country: USA: Kansas

ncbi_isolation_source: Clinical Isolate

ncbi_organism_name: Francisella tularensis

ncbi_submitter: US Food and Drug Administration


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: The University of Queensland


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_country: USA:New York Ontario

ncbi_isolation_source: leaf tissue

ncbi_organism_name: Xanthomonas campestris


ncbi_country: USA: VA

ncbi_isolation_source: healthy biopsy tissue; rectum

ncbi_organism_name: Pseudomonas sp. FDAARGOS_761


ncbi_country: USA: Colorado

ncbi_isolation_source: Chicken Breast

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. arizonae;x__Salmonella enterica subsp. arizonae serovar 18:z4,z23:-


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acinetobacter sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Udmurt Republic

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Berkelbacteria bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;x__unclassified Candidatus Berkelbacteria;s__Candidatus Berkelbacteria bacterium


ncbi_organism_name: Enterocloster clostridioformis


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZLSLER


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: Australia

ncbi_organism_name: Agrobacterium vitis

ncbi_strain_identifiers: NCPPB 3554

ncbi_submitter: Monash University Malaysia


ncbi_organism_name: Priestia megaterium

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Marivita cryptomonadis

ncbi_submitter: Shantou University


ncbi_organism_name: Pectobacterium parmentieri

ncbi_submitter: Pennsylvania State University


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Vienna


ncbi_isolate: Clinical

ncbi_isolation_source: Sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Clinical

ncbi_submitter: newcastle university


ncbi_organism_name: uncultured Sutterella sp.


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: bacterium


ncbi_organism_name: uncultured Enterobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_organism_name: Brucella sp.


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Yunnan

ncbi_isolation_source: Yunnan; China

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: intestinal content

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: ChinaCDC


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: France: Paris

ncbi_organism_name: Streptococcus macedonicus

ncbi_strain_identifiers: SGM CIP105683

ncbi_submitter: Institut Pasteur


ncbi_country: USA: Oklahoma

ncbi_isolation_source: wheat leaves

ncbi_organism_name: Pseudomonas protegens

ncbi_strain_identifiers: PF

ncbi_submitter: JLU


ncbi_country: USA: CO

ncbi_isolation_source: feces (Sus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_submitter: Zhejiang university


ncbi_assembly_name: Rumen uncultured genome RUG015

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Gaiellales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Paris Saclay University


ncbi_country: Pacific Ocean

ncbi_isolation_source: hadal trench sea water

ncbi_organism_name: Alteromonadaceae bacterium A_SAG6

ncbi_submitter: Chinese university of Hong Kong


ncbi_organism_name: Enterobacter cloacae complex sp.6700816

ncbi_submitter: Tel Aviv Sourasky Medical Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp.6700816


ncbi_country: United Kingdom

ncbi_isolation_source: symptomatic inner bark

ncbi_organism_name: Brenneria goodwinii

ncbi_submitter: University of the West of England


ncbi_country: Argentina

ncbi_isolation_source: Pleural fluid

ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Christian Medical College


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_isolation_source: ocular cornea

ncbi_organism_name: Staphylococcus sp. HMSC055A10

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: uncultured Tannerella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Switzerland

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Agroscope


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Collinsella sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: Germany

ncbi_isolation_source: feces from healthy individual

ncbi_submitter: University of Arkansas for Medical Sciences


ncbi_country: Thailand: Phichit Province

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Streptomyces sp. ET3-23

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Micromonospora sp. NPDC049366

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human gut

ncbi_organism_name: Coprobacillus cateniformis


ncbi_country: Spain

ncbi_organism_name: Staphylococcus aureus VE08/02126ST1

ncbi_submitter: Broad Institute


ncbi_country: USA: Ohio

ncbi_isolation_source: hospital shower hose biofilm

ncbi_organism_name: Sphingomonas sp. CCH5-D11

ncbi_submitter: U.S. Environmental Protection Agency


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Citrobacter sp. 210820-DFI.7.8

ncbi_submitter: University of Chicago


ncbi_country: Poland: Kalisz

ncbi_isolation_source: potato stem during vegetation period

ncbi_organism_name: Pectobacterium sp. IFB5596

ncbi_submitter: University of Gdansk


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Cleveland Clinic


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Candidatus Protochlamydia sp.

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Parachlamydiales;f__Parachlamydiaceae;g__Candidatus Protochlamydia;x__unclassified Candidatus Protochlamydia;s__Candidatus Protochlamydia sp.


ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_organism_name: Escherichia coli 908519

ncbi_submitter: Washington University


ncbi_submitter: IZSLER

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Austria: Pichlinger See

ncbi_isolation_source: freshwater

ncbi_submitter: Joint Microbiome Facility

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Methylacidiphilae;o__Methylacidiphilales;x__unclassified Candidatus Methylacidiphilales;s__Candidatus Methylacidiphilales bacterium


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD9030

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: Escherichia coli

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Salmonella sp. SKLX086248

ncbi_submitter: Zhejiang university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Bacillus mobilis

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: China: Sichuan

ncbi_isolation_source: pit mud

ncbi_organism_name: Acidilutibacter cellobiosedens

ncbi_submitter: Biogas Institute of Ministry of Agriculture


ncbi_country: China

ncbi_organism_name: Microbacterium halophytorum

ncbi_strain_identifiers: YZYP 518

ncbi_submitter: Xinjiang Normal University


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: Sewage

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centro Nacional de Biotecnologia-CSIC


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-318

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Flavobacteriales bacterium

ncbi_strain_identifiers: new MAG-318

ncbi_submitter: Micoorganism


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: concordia university


ncbi_country: USA: CA

ncbi_isolation_source: jejunum antelope barasingha (Rucervus duvaucelii)

ncbi_submitter: FDA/CFSAN


ncbi_country: Canada: British Columbia

ncbi_isolation_source: clinical sample from patient with gastroenteritis

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Blautia sp.

ncbi_submitter: AAFC


ncbi_organism_name: Paraconexibacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: France: Normandy; Caen

ncbi_isolation_source: Blood culture

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Normandy university


ncbi_assembly_name: Rumen uncultured genome RUG13923

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Canada: Atlantic

ncbi_isolation_source: Herd 418

ncbi_organism_name: Staphylococcus warneri

ncbi_strain_identifiers: SNUC 1312

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Anaeromassilibacillus sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: HOSPICES CIVILS DE LYON


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: China: Tianjin

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Alteromonas macleodii


ncbi_organism_name: Bacteroides intestinalis


ncbi_organism_name: Paenibacillus jamilae

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Klebsiella sp. R82

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Malawi

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Kitasatospora aureofaciens

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: India

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Assam University


ncbi_isolation_source: Faeces


ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sciensano


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Paenibacillus sp. CFBP13512

ncbi_submitter: INRA


ncbi_country: Russia

ncbi_isolation_source: not known


ncbi_isolation_source: feces pig

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Thiobacillus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Thailand: Thung Chang

ncbi_isolation_source: termite gut

ncbi_organism_name: Azoarcus sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Lentibacter algarum


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium GW2011_GWE2_39_6


ncbi_organism_name: Phototrophicaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: Beijing Genome Institute


ncbi_organism_name: Megasphaera elsdenii

ncbi_submitter: EMG


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Monash University


ncbi_country: China: South China Sea

ncbi_isolation_source: fluid

ncbi_organism_name: Cocleimonas sp.

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Uganda: Bombo Military Hospital

ncbi_isolation_source: PUS

ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_isolation_source: Rifle well CD01 at time point 6 / F; 5m depth; 0.1 filter

ncbi_organism_name: Tenericutes bacterium GWF1_35_14

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__unclassified Mycoplasmatota;s__Tenericutes bacterium GWF1_35_14


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacillus cereus group sp. BceL191

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL191


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Thermodesulfobacteriota bacterium


ncbi_organism_name: Pseudonocardia sp.

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Vibrio harveyi

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center for Biotechnology


ncbi_organism_name: Saccharococcus thermophilus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite de Limoges


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Barnesiella intestinihominis


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_2 depth 0-3 cm

ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Mollicutes bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Faculty of Science, Masaryk University


ncbi_organism_name: Aeromonas enteropelogenes

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: USA: Florida; Summerland Key

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Chlamydiia bacterium

ncbi_submitter: Stockholm University


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: CA

ncbi_isolation_source: white peach

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Antarctica: Eastern Antarctica; McMurdo Dry Valleys

ncbi_isolate: MDV bin94

ncbi_isolation_source: soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_strain_identifiers: MDV bin94

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Pseudomonas moraviensis

ncbi_submitter: Institute of Environmental Science and Research


ncbi_assembly_name: Rumen uncultured genome RUG13864

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Veillonella parvula

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: human

ncbi_submitter: University of Tennessee


ncbi_organism_name: Desulfovermiculus sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea: mountain of Deogyusan

ncbi_organism_name: Paenibacillus swuensis

ncbi_submitter: Seoul Women's University


ncbi_country: United Kingdom: Loughborough

ncbi_isolation_source: chicken liver

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: University of Nottingham


ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Hellenic Centre for Marine Research


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stanford University


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: Peru

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WTSI


ncbi_country: China: suburbs; Hangzhou

ncbi_isolation_source: raw cow milk

ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: Zhejiang Gongshang University


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolate: Myxococcales sp. RBC066

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_strain_identifiers: Myxococcales sp. RBC066

ncbi_submitter: UNIVERSITY OF WATERLOO


ncbi_isolation_source: Hospital

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Oxalobacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA: Oregon

ncbi_isolation_source: cane gall

ncbi_organism_name: Rhizobium sp. VS19-DR129.2

ncbi_submitter: Oregon State University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_submitter: INSTITUT PASTEUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae;x__Klebsiella pneumoniae subsp. pneumoniae T69


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG13759

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Italy: Panarea

ncbi_isolation_source: yellow-gray fringes

ncbi_organism_name: Gimesia alba

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of KwaZulu Natal


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_isolation_source: feaces

ncbi_organism_name: Campylobacter hyointestinalis subsp. hyointestinalis


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Chinese Academy Of Sciences


ncbi_country: Kenya

ncbi_organism_name: Prevotella sp. UBA6435

ncbi_submitter: University of Queensland


ncbi_country: USA: Pennsylvania; Centralia

ncbi_isolation_source: soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Michigan State University


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia sp. AU30280

ncbi_submitter: University of Michigan


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Acidaminococcus sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: bay water spring sample 20 PSU in less than .8 micron size fraction

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Clemson University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chinese People's Liberation Army General Hospital


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada:Terrace; Lakelse Hot Spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Bacillus sp. (in: firmicutes)

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. (in: firmicutes)


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Hafnia alvei

ncbi_submitter: EMG


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Terriglobales bacterium


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Finland: Varlaxudden; Baltic Sea

ncbi_isolation_source: Brackish water; Varlaxudden; Baltic Sea

ncbi_organism_name: Nostoc sp. UHCC 0870

ncbi_strain_identifiers: UHCC 0870

ncbi_submitter: University of Helsinki

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nostocaceae;g__Nostoc;x__unclassified Nostoc;s__Nostoc sp. UHCC 0870


ncbi_country: Spain: Catalunya

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: South Africa: Northwest of Grahamstown

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: One

ncbi_submitter: University of Regina


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cornell University


ncbi_country: Czech Republic:Brno

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: South Korea: Suwon

ncbi_isolation_source: Tomato bacterial wilt

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: RDA


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Nodosilinea sp. BSH.14

ncbi_submitter: South China Agricultural University


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: Priestia megaterium MLY91

ncbi_organism_name: Priestia megaterium

ncbi_submitter: Zhejiang University of Science and Technology


ncbi_assembly_name: freshwater MAG --- Ki2-D2_bin-1502

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: BILS


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pakistan: Balochistan

ncbi_isolation_source: infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_country: China: Shenzhen

ncbi_organism_name: Clostridium sp. AM49-4BH

ncbi_submitter: BGI


ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: Germany

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Leibniz Institute of Photonic Technology


ncbi_assembly_name: Burkholderia contaminans LMG 31806 assembly

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: LM-UGent


ncbi_organism_name: Clostridiales bacterium


ncbi_country: USA: Manassas; VA

ncbi_organism_name: Clostridium ljungdahlii DSM 13528

ncbi_strain_identifiers: PETC

ncbi_submitter: Cornell Genomics Core Facility


ncbi_strain_identifiers: ATCC 29213 WalK R86C

ncbi_submitter: Shenzhen people's hospital


ncbi_organism_name: Micromonospora lupini

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Polaromonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Switzerland

ncbi_organism_name: Escherichia albertii

ncbi_submitter: University of Zurich


ncbi_country: Austria: Vienna

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: uncultured Cytophagaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Mexico

ncbi_isolation_source: Heads

ncbi_organism_name: Enterococcus sp. S52

ncbi_submitter: USDA-ARS-Beltsville Sustainable Perennial Crops Laboratory


ncbi_isolation_source: Wound swab

ncbi_submitter: SurvCARE


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Taiwan

ncbi_submitter: National Chung Cheng University


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. B2-4-12

ncbi_submitter: Curtin University


ncbi_country: Canada: Sumas Prairie

ncbi_isolation_source: surface water

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of British Columbia


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Taizhou Municipal Hospital


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Victivallaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolate: isolate

ncbi_isolation_source: Urine

ncbi_strain_identifiers: isolate

ncbi_submitter: Dr. Sarita Mohapatra, Department of Microbiology, All Indian Institute of Medical Sciences


ncbi_country: Brazil

ncbi_isolation_source: Egg

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: stool

ncbi_organism_name: Prevotella sp.

ncbi_submitter: SAHMRI


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Phascolarctobacterium sp.


ncbi_isolation_source: Wound Right Shoulder OPERATIVE PRE INCISION

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_country: Chile

ncbi_isolation_source: egg poultry

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Vibrio coralliirubri

ncbi_submitter: STATION BIOLOGIQUE DE ROSCOFF


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus VCU006


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Rhodothermaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: bile

ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: SWAB FROM SKIN TISSUE

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: istituto zooprofilattico sperimentale della lombardia e dell'emilia romagna-i.z.s.l.e.r.


ncbi_assembly_name: freshwater MAG --- Loclat_bin-09656

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Staphylococcus epidermidis VCU050


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Give


ncbi_organism_name: Bdellovibrio bacteriovorus

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_country: Russia: North Ossetia

ncbi_isolation_source: cheese pickle

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Streptomyces sp. NPDC035033

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-347-O22

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: New York

ncbi_organism_name: Enterococcus faecium EnGen0254

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Novosphingobium sp.

ncbi_submitter: Spribille Lab


ncbi_country: China: Hangzhou

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Salt Lake City

ncbi_submitter: Cleveland Clinic

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: placenta

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Bifidobacterium subtile

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Massachusetts

ncbi_organism_name: Citrobacter sp. ASV29


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Faecousia sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Turkey: Kayseri

ncbi_isolation_source: Droppings

ncbi_organism_name: Campylobacter anatolicus

ncbi_submitter: Erciyes Univ. Faculty of Veterinary Medicine


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics