ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: activated sludge

ncbi_organism_name: Anaerolineales bacterium UBA5587

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F89075

ncbi_submitter: Broad Institute


ncbi_country: Ethiopia: Amhara; East Gojjam

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: uncultured Muribaculaceae bacterium


gtdb_representative: t

ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Bacteroidales bacterium UBA5433

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA5433


ncbi_assembly_level: Contig

ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: bacterium

ncbi_submitter: AAFC


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_submitter: Kiel University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_organism_name: Aeromonas media

ncbi_submitter: Northumbria University


ncbi_country: China: AnShun; Guizhou

ncbi_isolation_source: 3d patty soil

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Peking university


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


gtdb_type_species_of_genus: t

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Collection de l'Institut Pasteur

ncbi_type_material_designation: assembly from type material


ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Dekas Lab, Stanford University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Hominicoprocola sp.

ncbi_submitter: UIUC


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_organism_name: uncultured Bradyrhizobium sp.


ncbi_organism_name: Bifidobacterium longum


ncbi_organism_name: Corynebacterium amycolatum

ncbi_submitter: Toho university


ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Zhejiang A&F University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D7_bin-215

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: China: Longli Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Alitiscatomonas sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Conexibacteraceae bacterium


ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Candidatus Polarisedimenticolia;x__unclassified Candidatus Polarisedimenticolia;s__Candidatus Polarisedimenticolia bacterium


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Parabacteroides goldsteinii


ncbi_country: China:Dongma Square; Haidian District; Beijing

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: Beijing Institute of Technology


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Heidelberg University Hospital


ncbi_organism_name: Phycicoccus sp. 3266

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Australia

ncbi_isolation_source: PinotGris

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_country: Israel

ncbi_isolation_source: food

ncbi_submitter: Sheba Medical Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Prevotellamassilia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: Rumen uncultured genome RUG203

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Stenotrophomonas pavanii


ncbi_assembly_name: IMG-taxon 2599185183 annotated assembly

ncbi_organism_name: Geodermatophilus obscurus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Leptospiraceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Raoultella terrigena

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_isolation_source: blood culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_country: South Korea: Chungcheongnam-do

ncbi_isolation_source: left hand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chung-Ang University


ncbi_country: China: Meishan island;ningbo

ncbi_isolation_source: seawater

ncbi_organism_name: Paraneptunicella aestuarii

ncbi_refseq_category: reference genome

ncbi_submitter: Ningbo University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: China: Beijing city

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tianjin Genskey Medical Technology Co., Ltd


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_country: China: Nanning

ncbi_isolation_source: soil

ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: College of Agriculture, Guangxi University


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolate: Faeces

ncbi_isolation_source: ROAR

ncbi_submitter: UMR 1137 IAME


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Kofleriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Bolivia: Cochabamba

ncbi_isolation_source: Tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of the Basque Country UPV/EHU


ncbi_country: China: Liaoning

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Hong Kong

ncbi_isolation_source: anammox reactor

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: SponGES


ncbi_country: China: Taizhou

ncbi_isolation_source: sputum

ncbi_submitter: Zhejiang University School of Medicine


ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium longum;sb__Bifidobacterium longum subsp. longum;x__Bifidobacterium longum subsp. longum JCM 1217


ncbi_isolation_source: Faeces

ncbi_organism_name: Acutalibacter muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Chromosome

ncbi_country: Canada: Quebec

ncbi_isolation_source: Animal - Chicken

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. SA20094642


ncbi_country: Canada: Toronto

ncbi_isolation_source: anaerobic bioreactor

ncbi_organism_name: Acetobacterium sp. KB-1

ncbi_submitter: University of Toronto


ncbi_country: China: Deep Bay

ncbi_isolation_source: surface sediment

ncbi_organism_name: Ruegeria pomeroyi

ncbi_submitter: Microbial Evolution and Ecology Laboratory,Shenzhen Research Institute


ncbi_country: Italy

ncbi_isolation_source: environmental swab sponge meat facility

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA:New York; Morrisania

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter soli

ncbi_submitter: Toho University


ncbi_organism_name: Bradyrhizobium sp. JR7.2

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Escherichia whittamii

ncbi_submitter: AgResearch Limited


ncbi_organism_name: Algoriphagus sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_country: Russia: Samara

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Borreliella carolinensis

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Poland

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_assembly_name: Rumen uncultured genome RUG12373

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: United Kingdom: Cambridge

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: SynA-FisC

ncbi_submitter: MRC Laboratory of Molecular Biology


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Lactobacillus delbrueckii subsp. allosunkii


ncbi_organism_name: Alicyclobacillus acidiphilus

ncbi_strain_identifiers: Alicyclobacillus acidophilus DSM 14558

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_country: Japan

ncbi_isolation_source: Soil

ncbi_organism_name: Microbispora amethystogenes

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWA2_50_10


ncbi_country: Viet Nam: Ben Tre

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Biotechnology Centre of Ho Chi Minh city


ncbi_country: Brazil: Espirito Santo

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: FIOCRUZ


ncbi_country: USA: California; Eel River; South Fork Eel River; downstream of confluence with Fox Creek

ncbi_isolation_source: river cyanobacterial mat

ncbi_organism_name: Microcoleus sp. PH2017_20_SFW_D_A

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Sutterellaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Clemson University


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago


ncbi_country: Kenya: Kibera

ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: Univ. of Maryland


ncbi_country: India: Tiruvallur

ncbi_organism_name: Mycobacterium tuberculosis M2084

ncbi_submitter: Broad Institute


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol


ncbi_submitter: Translational Health Science and Technology Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Brachymonas sp.

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Sulfurimonas denitrificans

ncbi_submitter: University of Waterloo


ncbi_country: Russia: Moscow

ncbi_isolation_source: Throat swab (meningitis)

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: SRCAMB


ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: JCVI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Veillonella atypica

ncbi_submitter: University of Chicago


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: India: Arabian Sea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Stutzerimonas frequens

ncbi_submitter: National Institute of Ocean Technology


ncbi_country: Paraguay

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gottfriedia acidiceleris

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: China: anhui

ncbi_isolation_source: hefei

ncbi_submitter: Center for Disease Control and Prevention of PLA


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Viet Nam: Phu Tho

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Genome Research


ncbi_assembly_name: IMG-taxon 2593339153 annotated assembly

ncbi_organism_name: Bowdeniella nasicola

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Rectinema sp.

ncbi_submitter: CLUE-TERRA


ncbi_submitter: Hangzhou Medical College


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Yonsei University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_submitter: Cornell University


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0260R

ncbi_submitter: Broad Institute


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: uncultured Veillonella sp.


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Dialister sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Serratia plymuthica

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand:Nakhon Sawan

ncbi_isolation_source: Soil

ncbi_organism_name: Sphaerimonospora thailandensis

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Pelagibacterium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Groningen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Switzerland

ncbi_isolation_source: Superficial Wound Swab

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: University of Basel


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nizam College, Osmania University


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: China: Qinghai Province

ncbi_isolation_source: trachea

ncbi_organism_name: Carnobacteriaceae bacterium zg-ZUI252

ncbi_submitter: China CDC


ncbi_isolation_source: Blood

ncbi_submitter: WTSI


ncbi_assembly_name: freshwater MAG --- Umea2p1_bin-0712

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: Ireland

ncbi_isolation_source: Ear swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University College Cork


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Spain: Madrid

ncbi_submitter: Hospital Universitario Ramon y Cajal


ncbi_country: Spain: Asturias

ncbi_isolation_source: blood

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_organism_name: Phocaeicola coprophilus JCM 13817

ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola coprophilus;x__Phocaeicola coprophilus JCM 13817


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Sphingopyxis sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: EMG


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater inflow

ncbi_organism_name: Escherichia coli

ncbi_submitter: BIOTEC


ncbi_country: France

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_country: China

ncbi_isolation_source: farmland biome

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Guangxi academy of agricultural sciences


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: Rutgers University


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Ligilactobacillus salivarius NIAS840

ncbi_submitter: NIAS, Korea


ncbi_country: France: Bretagne

ncbi_isolation_source: Poultry

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: Brazil: Florianopolis

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: uncultured Akkermansia sp.


ncbi_country: Iraq: Baghdad

ncbi_isolation_source: wound swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: College of Medicine/Al-Nahrain University


ncbi_country: Australia

ncbi_submitter: University of Technology, Sydney


ncbi_country: Germany

ncbi_isolation_source: clinical specimen

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University Hospital Tuebingen


ncbi_country: USA: Great Salt Lake

ncbi_isolation_source: sediments

ncbi_organism_name: Wenzhouxiangellaceae bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Bacillus mojavensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus mojavensis


ncbi_country: USA

ncbi_isolation_source: fecal composite of dairy cows

ncbi_submitter: USDA


ncbi_submitter: South China Agriculture University


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_isolate: SPRUCE 460

ncbi_organism_name: Terracidiphilus sp.

ncbi_strain_identifiers: SPRUCE 460

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: South Korea: Gopado

ncbi_isolation_source: sea-tidal flat sediment

ncbi_organism_name: Serinicoccus sediminis

ncbi_submitter: Korea University


ncbi_country: China: Sichuan

ncbi_isolation_source: swine farm

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: sichuan university


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: Canada: British Columbia;Surrey

ncbi_isolation_source: water - canal

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: Thailand: Hat Yai City; Songkhla province

ncbi_isolation_source: environmental

ncbi_submitter: National University of Singapore and Genome Institute of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: Sediment

ncbi_organism_name: Burkholderia lata

ncbi_submitter: LM-UGent


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium 28-4

ncbi_submitter: Broad Institute


ncbi_organism_name: Stutzerimonas kunmingensis


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: Netherlands

ncbi_organism_name: Xanthomonas hyacinthi

ncbi_strain_identifiers: CFBP 1156

ncbi_submitter: The Ohio State University


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: cheese

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Instituto de Productos Lacteos de Asturias (IPLA-CSIC)


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA113


ncbi_isolation_source: sheep gut metagenome

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_assembly_name: CLC assembled contigs

ncbi_isolation_source: sea water

ncbi_organism_name: Prochlorococcus marinus

ncbi_strain_identifiers: SCGC AAA795-I15

ncbi_submitter: UNIVERSITY OF CALIFORNIA - SAN DIEGO


ncbi_country: Poland: Gdansk

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_submitter: University of Technology, Sydney


ncbi_assembly_name: Rumen uncultured genome RUG273

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Oregon State University


ncbi_organism_name: Segatella copri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale


ncbi_country: New Zealand

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


ncbi_country: Canada

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Yangzhou University


ncbi_country: Pacific Ocean: South Pacific gyre

ncbi_isolation_source: seawater

ncbi_organism_name: Veronia pacifica

ncbi_strain_identifiers: CAIM 1920

ncbi_submitter: CIAD, A.C.


ncbi_organism_name: Bryobacteraceae bacterium


ncbi_country: USA: NH; DHMC

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Dartmouth College


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Quanzhou Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Centro de Investigaciones Biologicas Aplicadas


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: China National Center for Food Safety Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Eggerthella lenta


ncbi_organism_name: Candidatus Aminicenantaceae bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Aminicenantaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Aminicenantaceae;x__unclassified Candidatus Aminicenantaceae;s__Candidatus Aminicenantaceae bacterium


ncbi_organism_name: Priestia aryabhattai


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Brazilian Center for Research in Energy and Materials CNPEM


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Aeromonas dhakensis

ncbi_strain_identifiers: BAR-OCT

ncbi_submitter: Federal University Lafia


ncbi_organism_name: Sutterella wadsworthensis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: China-Japan Friendship Hospital, Beijing, China.


ncbi_isolate: AOP25_F1_surf _bin _1

ncbi_organism_name: Psychrobacter sp.

ncbi_strain_identifiers: AOP25_F1_surf _bin _1

ncbi_submitter: Genoscope


ncbi_organism_name: Escherichia coli

ncbi_submitter: Singapore General Hospital


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Czech Republic: esk Lpa

ncbi_isolation_source: Urine (catheter)

ncbi_organism_name: Morganella morganii

ncbi_submitter: Charles University in Prague


ncbi_country: Antarctica: Mackay Glacier regions; Spalding Pond

ncbi_isolation_source: mineral soil

ncbi_organism_name: Propionibacteriales bacterium


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; solid retention time of 6 days

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Acinetobacter nosocomialis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Karolinska Institutet


ncbi_submitter: Center for Microbial Communities


ncbi_country: China: East China Sea

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_organism_name: Shigella sonnei

ncbi_submitter: Centers for Disease Control, Taiwan


ncbi_country: China

ncbi_isolation_source: duck cloacal

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan Agricultural University


ncbi_country: USA: Bridger Bay in Great Salt Lake; Utah

ncbi_isolation_source: Microbial Mat

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Montana State University


ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: Radboud University


ncbi_country: Italy

ncbi_isolation_source: Vaginal Swab

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Parma


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: China Agricultural University


ncbi_country: Cameroon

ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: Emerging Pathogens Institute, University of Florida,


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: environmental waters

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Neisseria sp.

ncbi_submitter: Center for Bioinformatics


ncbi_country: Kuwait

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Kuwait University


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Sponge: Agelas oroides

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Jatrophihabitantaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Sweden: Vastra Gotaland; Gothenburg

ncbi_isolation_source: sputum sample

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: TAILORED-Treatment project


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Terriglobus sp.


ncbi_organism_name: [Clostridium] innocuum 2959

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Colorado State University


ncbi_country: USA: CA

ncbi_isolation_source: feces of cat named Lilbub from private home

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: AnimalBiome


ncbi_organism_name: Mammaliicoccus sp. Dog046

ncbi_submitter: University of Bern


ncbi_isolation_source: screen

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: China: Hangzhou

ncbi_isolation_source: body fluid

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence

ncbi_organism_name: bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_country: China: Gansu

ncbi_isolation_source: sputum

ncbi_submitter: Center for Disease Control and Prevention of Chinese PLA


ncbi_country: Indonesia

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Agarilytica sp.

ncbi_submitter: Japan Agency for Marine-Earth Science and technology (JAMSTEC)


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_isolation_source: Environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sun Yat-sen University


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: csf

ncbi_organism_name: Propionibacterium sp. HMSC078F01

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Ireland

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Netherlands: Delft; Harnasch polder WWTP

ncbi_isolate: labscale reactor_MAG36

ncbi_isolation_source: aerobic granular sludge sequencing batch reactor fed with glycerol; inoculum derived from raw wastewater

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_strain_identifiers: labscale reactor_MAG36

ncbi_submitter: TU Delft


ncbi_organism_name: Lentzea sp. NPDC004782

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China

ncbi_organism_name: Aliiroseovarius crassostreae

ncbi_submitter: Ocean University of China


ncbi_country: Switzerland

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: France: Vosges

ncbi_isolation_source: forest soil

ncbi_organism_name: Paraburkholderia megapolitana

ncbi_submitter: University Reims Champagne Ardennes UMR FARE


ncbi_country: Antarctica

ncbi_isolation_source: Lichen

ncbi_organism_name: Lichenihabitans psoromatis

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pennsylvania; Centralia

ncbi_isolation_source: soil

ncbi_organism_name: Spartobacteria bacterium

ncbi_submitter: Michigan State University


ncbi_submitter: Huazhong Agricultural University


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Yoonia sp.

ncbi_submitter: Universidad Andres Bello


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Sulfurovum sp. 39-42-12


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: The University of Melbourne


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-387

ncbi_isolation_source: bioreactor sludge

ncbi_strain_identifiers: new MAG-387

ncbi_submitter: Micoorganism


ncbi_country: China: Shanghai

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH12255

ncbi_submitter: South China Agricultural University


ncbi_country: New Zealand

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


ncbi_organism_name: uncultured Comamonadaceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG12033

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Pseudogracilibacillus sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: USA

ncbi_isolation_source: Pullet

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Missouri


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Cyanobacterium aponinum UTEX 3222

ncbi_strain_identifiers: UTEX 3222

ncbi_submitter: The Two Frontiers Project


ncbi_submitter: University College Cork


ncbi_organism_name: Microbacterium invictum

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Germany

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Sphingomonas sp. CFBP 13720

ncbi_submitter: INRAE


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Universidad Autonoma Metropolitana Cuajimalpa


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: Alistipes communis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The University of Queensland


ncbi_country: Romania

ncbi_organism_name: Xanthomonas phaseoli pv. phaseoli

ncbi_submitter: IRHS


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1391 from squamous cell carcinomas patient MST003

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Queensland


ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_isolation_source: silkworm excrement

ncbi_submitter: The Sericulture and Agri-Food Research Institute


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: USA: PA

ncbi_isolation_source: small intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: homo

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_submitter: Uniwersytet Warminsko-Mazurski w Olsztynie


ncbi_assembly_name: Rumen uncultured genome RUG11459

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Kouleothrix sp.

ncbi_submitter: Nanyang Technological University


ncbi_country: Lebanon

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Lebanese American University


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces of yak

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: New Zealand: South Island; Marlborough; Capsize Point

ncbi_isolation_source: marine sponge

ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: VICTORIA UNIVERSITY WELLINGTON

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: uncultured Romboutsia sp.

ncbi_submitter: EMG


ncbi_organism_name: Curtobacterium sp. PhB172

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Qinghai Province

ncbi_isolation_source: trachea

ncbi_organism_name: Carnobacteriaceae bacterium zg-84

ncbi_submitter: China CDC


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: Harvard University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Treponema sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Rhorus exstirpatorius


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_isolation_source: spleen mouse

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Neisseria blantyrii

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: bovine

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: CA

ncbi_isolation_source: baby spinach

ncbi_organism_name: Listeria monocytogenes CFSAN002345

ncbi_submitter: FDA


ncbi_assembly_name: Salmonella enterica CVM N45402 v1.0

ncbi_country: USA: MO

ncbi_isolation_source: Ground Beef

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_organism_name: Bacillus cereus

ncbi_submitter: South China Agricultural University


ncbi_country: China: Shangdong

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_country: China: South China Sea

ncbi_isolation_source: 22-24 cm sediments from a site close to mussel colony in Haima cold seep area in South China Sea

ncbi_organism_name: bacterium

ncbi_submitter: Shandong University


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-Sea hydrothermal vent

ncbi_organism_name: Exiguobacterium sp. s121

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. s121


ncbi_country: Switzerland: Basel

ncbi_isolation_source: Cooling tower

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Desulfobacterales bacterium


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Nigeria

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: India

ncbi_isolation_source: Wastewater treatment plant Effluent

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Madurai Kamaraj University


ncbi_country: China

ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bilophila sp.

ncbi_submitter: addis ababa university


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA

ncbi_organism_name: Clostridium tertium

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Serratia quinivorans

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Sulfitobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: China: Shanghai

ncbi_submitter: China Agricultural University


ncbi_country: USA: WV

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: USA: Point Judith; Narragansett; RI

ncbi_isolation_source: gill tissue

ncbi_organism_name: Solemya velum gill symbiont

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;s__Solemya velum gill symbiont


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: Canada: Quebec; Champlain Lake

ncbi_isolation_source: non-axenic culture from freshwater

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Candidatus Eremiobacteraceae bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Candidatus Eremiobacterales;f__Candidatus Eremiobacteraceae;x__unclassified Candidatus Eremiobacteraceae;s__Candidatus Eremiobacteraceae bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Gilliamella sp. CG16


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar fukuokaensis


ncbi_organism_name: Alistipes inops


ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Collinsella sp. LCP19S3_H3

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Kitasatospora purpeofusca

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: UTHealth School of Public Health


ncbi_organism_name: Bacillus safensis

ncbi_submitter: Bangladesh Council of Scientifc and Industrial Research


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Brucella melitensis

ncbi_submitter: The first Hospital of Jilin University


ncbi_submitter: Agricultural University of Athens


ncbi_organism_name: uncultured Gemmatimonadales bacterium


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Roseateles asaccharophilus

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Trichococcus flocculiformis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Undibacterium arcticum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolate: metabat2_coassembly_bwa.857 MAG

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_strain_identifiers: metabat2_coassembly_bwa.857 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University Bourgogne Franche-Comte, INRAE, Institut Agro Dijon


ncbi_organism_name: uncultured Legionella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterococcus sp. DIV0764

ncbi_submitter: Broad Institute


ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: naresuan university


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Zetaproteobacteria bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Candidatus Cloacimonas sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;x__unclassified Candidatus Cloacimonas;s__Candidatus Cloacimonas sp.


ncbi_isolation_source: Human (gut)

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: diffuse vent DFF1


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_assembly_name: Rumen uncultured genome RUG12736

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Trueperaceae bacterium


ncbi_country: Tanzania: Dar es Salaam

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bergen


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Agroscope


ncbi_isolation_source: environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_isolation_source: hadal trench sea water

ncbi_organism_name: Rhodobacteraceae bacterium R_SAG3

ncbi_submitter: Chinese university of Hong Kong


ncbi_country: India: Karnal

ncbi_isolation_source: infant

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: National Dairy Research Institute


ncbi_isolation_source: middle ear

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Rothia mucilaginosa


ncbi_country: USA: PA

ncbi_isolation_source: pleural cavity

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Natranaerovirga pectinivora

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: High River

ncbi_isolation_source: Cattle feces

ncbi_submitter: LETHBRIDGE RESEARCH CENTRE


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massey University


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Romania: Bucharest

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Research Institute of University of Bucharest - ICUB


ncbi_submitter: China Agricultural University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Casarano

ncbi_isolation_source: Respiratory Sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pseudomonas Italian work group


ncbi_country: Netherlands

ncbi_isolation_source: Blood


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: stool

ncbi_submitter: SAHMRI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Chile

ncbi_isolation_source: Seafoods

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Universidad de Chile


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;x__Candidatus Saganbacteria;s__candidate division WOR-1 bacterium RIFOXYA2_FULL_37_7


ncbi_isolate: clinical

ncbi_isolation_source: clinical

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: clinical

ncbi_submitter: Faculty of Health Sciences


ncbi_country: Kenya: Kisumu

ncbi_submitter: Makerere University


ncbi_country: India: Pune

ncbi_isolation_source: curd

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Agharkar Research Institute


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: New Caledonia

ncbi_isolation_source: soil

ncbi_organism_name: Leptospira levettii

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_country: China: Fujian

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: Finland

ncbi_isolation_source: Emmental

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_strain_identifiers: CIRM-BIA 277

ncbi_submitter: Brigham Young University


ncbi_country: Malawi

ncbi_isolation_source: CSF


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: EPFL


ncbi_country: China: Shenzhen

ncbi_isolation_source: shrimp

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Oswaldo Cruz Institute - Fiocruz


ncbi_organism_name: archaeon

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Egypt

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Federal University of Minas Gerais


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0304

ncbi_submitter: Broad Institute


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: AAFC


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_country: USA: Texas

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- Day6-6_bin-338

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human gut

ncbi_organism_name: Anaerococcus senegalensis


ncbi_country: Uganda: Kampala

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Marian University College


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Grumpensis


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China:Lengshuijiang City;Hunan Province

ncbi_isolation_source: antimony mine

ncbi_organism_name: Klebsiella pasteurii

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: BGI


ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG10313

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: United Kingdom:Papworth

ncbi_organism_name: Mycobacteroides abscessus


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Abdominal abscess

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Aarhus University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Singulisphaera sp. GP187

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Yangzhou; Jiangsu province

ncbi_submitter: Yangzhou University


ncbi_country: Canada: Guelph

ncbi_isolation_source: paw

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_organism_name: Escherichia coli B175

ncbi_submitter: Broad Institute


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: Tang lab


ncbi_country: USA: San Diego County; CA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: California Department of Public Health


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: CAU


ncbi_country: China: Hangzhou


ncbi_organism_name: Rothia mucilaginosa


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: Australia: Tasmania

ncbi_isolation_source: Fish hatchery

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: The University of Queensland


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom

ncbi_isolation_source: patient with bronchiectasis

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: guangzhou

ncbi_isolation_source: rice root

ncbi_organism_name: Streptomyces lusitanus

ncbi_submitter: Jinan University


ncbi_country: China: Sichuan

ncbi_submitter: Northwest A&F University


ncbi_country: Italy

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_country: USA: Boston; MA

ncbi_isolation_source: broncoscopy

ncbi_organism_name: Staphylococcus aureus M0557


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: FDA


ncbi_organism_name: Pelistega suis

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Canada: Ontario

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas syringae pv. tomato

ncbi_strain_identifiers: Pst DC 03T6

ncbi_submitter: Ottawa Research and Development Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. tomato


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Washington


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: nasal swab

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: MI

ncbi_isolation_source: cloacae

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W86063

ncbi_submitter: Broad Institute


ncbi_country: China: Tibet

ncbi_organism_name: Bacillus subtilis


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: University of Bern


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Canada

ncbi_isolation_source: feces (Bos taurus)


ncbi_organism_name: Zymomonas mobilis

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Vibrio paracholerae

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_country: Thailand: Pathum Thani

ncbi_isolation_source: soil

ncbi_organism_name: Sporolactobacillus sp. THM7-4

ncbi_submitter: Food Biotechnology Research Unit, National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, 113, Thailand Science Park, Phahonyothin Rd., Klong Nueng, Klong Luang, Pathumthani 12120, Thailand


ncbi_isolation_source: Vagina

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Avibacterium avium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: University of Calgary


ncbi_assembly_name: IMG-taxon 2616645010 annotated assembly

ncbi_organism_name: Arthrobacter sp. NIO-1057

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Martinique

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: University of California, Davis


ncbi_assembly_name: Rumen uncultured genome RUG14826

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: Rumen uncultured genome RUG14461


ncbi_country: Kenya

ncbi_isolation_source: Pus

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_country: China

ncbi_isolation_source: Tibetan Plateau glacier

ncbi_organism_name: Occultella glacieicola

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_country: Brazil: Pelotas

ncbi_isolation_source: Blood

ncbi_organism_name: Leptospira kirschneri serovar Mozdok

ncbi_submitter: Universidade Federal de Pelotas


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: rectal swab of pregnant women

ncbi_submitter: Univeristy of Pretoria and National Health Laboratory Services


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 18

ncbi_submitter: Oregon State University


ncbi_assembly_name: Rumen uncultured genome RUG10923

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Denmark: Randers

ncbi_isolation_source: activated sludge from Rand_18-Q3-R56-63

ncbi_organism_name: Candidatus Vicinibacter affinis

ncbi_submitter: Aalborg University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Ohio

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: Sweden: Bothnian Sea

ncbi_isolation_source: Bothnian Sea site NB8 sediments 37-42 cm depth; used to inoculate methane- and iron-fed bioreactor (T0); bioreactor biomass 16 months after reactor inoculation (T1); and 29 months after reactor inoculation (T2)

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Radboud University Nijmegen


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Alkalibacterium sp.

ncbi_submitter: University of Calgary


ncbi_country: Russia: Nizhny Novgorod

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Micr


ncbi_country: China: Yunnan province

ncbi_isolation_source: Pu er tea

ncbi_organism_name: Paenibacillus sp. YN15

ncbi_submitter: Shanghai University


ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: UCONNMISEQ

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Australia: Newcastle

ncbi_organism_name: Agathobacter sp.

ncbi_submitter: University of Queensland


ncbi_country: Switzerland

ncbi_isolation_source: Gruyere

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Bern


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nestle Research Center


ncbi_organism_name: Halalkalibacter akibai JCM 9157

ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Halalkalibacter;s__Halalkalibacter akibai;x__Halalkalibacter akibai JCM 9157


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Yersinia massiliensis

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Aeromonas sp. R5-3

ncbi_submitter: Hangzhou CDC


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Shang qiu

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. NEAU-H33

ncbi_submitter: School of life science


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University College Dublin


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Staphylococcus cohnii subsp. cohnii

ncbi_submitter: JIlin Agriculture Science And Technology College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;x__Staphylococcus cohnii species complex;s__Staphylococcus cohnii;sb__Staphylococcus cohnii subsp. cohnii


ncbi_country: USA: Washington state; Ritzville

ncbi_isolation_source: wheat rhizosphere

ncbi_organism_name: Pseudomonas sp. R1-43-08

ncbi_submitter: Universite de Moncton


ncbi_country: Brazil: Parana; Astorga

ncbi_isolation_source: orange fruit with canker citrus

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: LV

ncbi_submitter: Universidade Estadual de Londrina


ncbi_country: Taiwan: Hospital

ncbi_isolation_source: plasma

ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: National Chung Cheng University


ncbi_country: Uruguay

ncbi_isolation_source: urine

ncbi_organism_name: Leptospira noguchii

ncbi_submitter: INRS-Centre Armand-Frappier Sante Biotechnologie


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment

ncbi_organism_name: Firmicutes bacterium UBA3561

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA3561


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D7_bin-780

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Eubacterium ventriosum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Solibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_submitter: Lebanese American University-Microbial Pathogenomics Lab


ncbi_submitter: Fifth Affiliated Hospital, Southern Medical University


ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Polaromonas sp. DSP2-3-2b2

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Streptomyces hydrogenans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_organism_name: Parabacteroides distasonis


ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Singulisphaera sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Enterococcus lactis


ncbi_organism_name: Paenibacillus sp. NRS-1783

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada: Nunavut

ncbi_isolation_source: high Arctic cold saline sulfur spring anaerobic sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: McGill University


ncbi_organism_name: Terriglobia bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolate: AOP14_B2_surf _bin _9

ncbi_organism_name: Pseudolactococcus laudensis

ncbi_strain_identifiers: AOP14_B2_surf _bin _9

ncbi_submitter: Genoscope


ncbi_organism_name: Candidatus Cryptobacteroides bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides bacterium


ncbi_organism_name: Catenibacterium sp.


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;x__environmental samples;s__uncultured Candidatus Berkelbacteria bacterium


ncbi_isolate: OQTRJ

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater influent sample

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Algibacter sp. TI.3.09

ncbi_submitter: University of Chicago


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Hoylesella shahii

ncbi_submitter: EMG


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: human gut

ncbi_organism_name: Blautia hydrogenotrophica


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus durans

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Denmark: Jaegerspris slot; under dead tree

ncbi_organism_name: Streptomyces sp. NBC_01764

ncbi_submitter: Technical University of Denmark


ncbi_country: USA:Chicago; Lake Michigan

ncbi_isolation_source: Lake Michigan

ncbi_organism_name: Janthinobacterium sp. LM6

ncbi_submitter: The University of Chicago


ncbi_country: China: Western China

ncbi_organism_name: Sphingobacterium deserti

ncbi_submitter: BIOTECHNOLOGY RESEARCH INSTITUTE, CAAS


ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: Jiangxi Agricultural University


ncbi_isolation_source: human skin metagenome

ncbi_organism_name: uncultured Halomonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Enterobacter sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: uncultured Rhodobacterales bacterium


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Arenicellales bacterium


ncbi_country: China: Shandong

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kazan Federal University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: Candidatus Campbellbacteria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Campbelliibacteriota;x__unclassified Candidatus Campbellbacteria;s__Candidatus Campbellbacteria bacterium


ncbi_country: Canada: Port Moody Belcarra Park

ncbi_isolation_source: Apodemus sylvaticus Tissue Culture

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: University of Regina


ncbi_country: Japan: Ishigaki Island

ncbi_isolation_source: Marine macroalgae

ncbi_organism_name: Marinibactrum halimedae

ncbi_submitter: Guangxi University


ncbi_organism_name: Flexilinea sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Morocco: Sidi Yahia Zaer

ncbi_isolation_source: New born lamb presenting respiratory symptoms

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: INRA, Unite de Recherche en Biotechnologie


ncbi_country: Costa Rica

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- KR_bin-2429

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: French Guiana: Petit Saut

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_genome_category: derived from single cell

ncbi_strain_identifiers: JGI MDM2 SSWTFF-3-K9

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Fervidibacterota;x__unclassified Candidatus Fervidibacterota;s__Candidatus Fervidibacteria bacterium JGI MDM2 SSWTFF-3-K9


ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: water from hydrothermal vent

ncbi_organism_name: Marinitoga sp. 1137

ncbi_submitter: University of Oslo


ncbi_country: USA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: ABKVF

ncbi_submitter: NHGRI/NIH


ncbi_country: Brazil:Sao Paulo; Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Bangladesh

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium lentis

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- Loc090721-6m_bin-652

ncbi_organism_name: uncultured beta proteobacterium


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Amygdalobacter indicium

ncbi_strain_identifiers: UPII 610-J

ncbi_submitter: Fred Hutchinson Cancer Center


ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_isolation_source: cow

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA: NC

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: human stool

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: soil enriched with naphthalene

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Duke University


ncbi_submitter: Chinese center for disease control and prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A