ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Oak Ridge National Laboratory


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: uncultured Ardenticatenaceae bacterium

ncbi_submitter: Centre for Microbiome Research


gtdb_representative: f

ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine


ncbi_assembly_level: Contig

ncbi_organism_name: Pseudomonas oryzihabitans

ncbi_submitter: UNESP-FCAV


ncbi_country: United Kingdom: Aberdeen

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Leicester


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_isolation_source: stool

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: URMITE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Streptomyces sp. NPDC015144

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Jau

ncbi_isolation_source: Tracheal secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: cattle farm

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: sichuan university


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Segatella oris

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: Technische Universiteit Delft


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Neisseria uirgultaei

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: Denmark: Horsens

ncbi_isolation_source: seed

ncbi_organism_name: Duffyella gerundensis

ncbi_submitter: University of Copenhagen


ncbi_country: New Zealand: Canterbury

ncbi_isolation_source: potato samples

ncbi_organism_name: Pectobacterium polaris

ncbi_submitter: The New Zealand Institute for Plant and Food Research Ltd.


ncbi_isolation_source: clinical

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Rutgers University


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: surficial creek

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Northwestern University


ncbi_country: China: Nanjing

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing agticultural university


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Puerto Rico: SALINAS

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Germany

ncbi_isolation_source: clinical specimen

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Tuebingen


ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Computational Biology and Microbial Ecology


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Mitsuokella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Acinetobacter nosocomialis


ncbi_assembly_name: freshwater MAG --- LJ-13-9m_bin-179

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Kyung Hee University


ncbi_country: Spain

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus C2930

ncbi_submitter: Broad Institute


ncbi_assembly_name: freshwater MAG --- LaPlata-a_bin-1125

ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: China: Jing Zi Habour; Weihai

ncbi_organism_name: Agaribacter marinus

ncbi_submitter: Shandong University at Weihai


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Peribacter sp.

ncbi_submitter: University of Calgary

ncbi_taxonomy: d__Bacteria;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;f__;g__Candidatus Peribacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;x__Candidatus Peribacteraceae;g__Candidatus Peribacter;x__unclassified Candidatus Peribacter;s__Candidatus Peribacter sp.


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acidovorax sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nesterenkonia aerolata

ncbi_refseq_category: reference genome

ncbi_submitter: Hohai University

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_isolation_source: human skin metagenome

ncbi_organism_name: uncultured Lysobacteraceae bacterium


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-0307

ncbi_organism_name: uncultured Pirellula sp.


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Dysgonomonas mossii

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Australia: Newcastle

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Australia: Adelaide

ncbi_isolation_source: nasal tract

ncbi_organism_name: Corynebacterium accolens

ncbi_submitter: University of Adelaide


ncbi_country: Lithuania

ncbi_isolation_source: environmental water

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Lithuanian University of Health Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: Coriobacteriaceae bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Balneolaceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;x__environmental samples;s__uncultured Balneolaceae bacterium


ncbi_isolation_source: cheese

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Functional Genomics Lyon (IGFL)


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Nosocomiicoccus ampullae

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-7222

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Buchananbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Buchananiibacteriota;x__unclassified Candidatus Buchananbacteria;s__Candidatus Buchananbacteria bacterium


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: National Institute of Health


ncbi_organism_name: Helicobacter ganmani


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Anaerococcus vaginalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-347-K22

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Canada: Lacombe

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: AAFC


ncbi_country: Hungary: Budapest

ncbi_isolation_source: nasopharynx

ncbi_submitter: Semmelweis University


ncbi_assembly_name: Rumen uncultured genome RUG14505

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Chile: Regin metropolitana

ncbi_isolation_source: Farm environmental

ncbi_submitter: UNIVERSIDAD ANDRES BELLO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


gtdb_type_species_of_genus: t

ncbi_isolation_source: Water-cooling system

ncbi_organism_name: Allofrancisella inopinata

ncbi_strain_identifiers: SYSU YG23

ncbi_submitter: Swedish Defence Research Agency (FOI)


ncbi_organism_name: Syntrophorhabdaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSERM UMR 1137


ncbi_assembly_level: Chromosome

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Southern Denmark


ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus 970107

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus 970107


ncbi_assembly_name: SR1.6_4 Medusa

ncbi_organism_name: Methylobacterium radiotolerans

ncbi_submitter: Instituto de Quimica


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_organism_name: Candidatus Fermentibacter danicus

ncbi_submitter: University of Utah

ncbi_taxonomy: d__Bacteria;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__Candidatus Fermentibacter;s__Candidatus Fermentibacter danicus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__Candidatus Fermentibacter;s__Candidatus Fermentibacter danicus


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus MISS6132

ncbi_submitter: Broad Institute


ncbi_country: China: Tibetan lake

ncbi_organism_name: Nesterenkonia sp. YGD6

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Colombia: Valle

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Acetivibrio sp.


ncbi_organism_name: Chitinophaga pinensis


ncbi_organism_name: Streptomonospora arabica

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: Synechococcus sp. MED-G67

ncbi_submitter: Universidad Miguel Hernandez


ncbi_country: South Korea: Chungcheongbuk-do

ncbi_isolation_source: chicken meat

ncbi_submitter: Korea University Graduate School

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Peru

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Veillonella sp.


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: United Kingdom:Scotland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Egypt

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: bioMerieux


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: Factory

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Surrey


ncbi_country: Germany

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Leibniz Institute DSMZ-German Collection of Microrganisms and Cell Cultures


ncbi_isolate: Fecal samples

ncbi_isolation_source: VDG

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: NIH/NHGRI


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Caecum

ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Argentina

ncbi_isolation_source: Skin Swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_country: Tunisia: Diar Hajjaj

ncbi_isolation_source: Flowers

ncbi_organism_name: Bacillus stercoris

ncbi_submitter: CBBC


ncbi_country: USA: western arm Lake Superior

ncbi_isolation_source: freshwater cyanobacterial bloom

ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: University of Minnesota Duluth


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_country: USA: FL

ncbi_submitter: University of Florida


ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Bangladesh

ncbi_isolation_source: urine

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_organism_name: Neisseria dentiae

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides cellulosilyticus WH2

ncbi_submitter: Center for Genome Sciences and Systems Biology, Washington University in St. Louis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zoonosis Science Center


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_country: China: Jinhua

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia mollaretii

ncbi_submitter: SC


ncbi_isolation_source: Nodules of plant

ncbi_organism_name: Devosia nitrariae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: IA

ncbi_isolation_source: peritoneum (Gallus gallus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Beijing

ncbi_isolation_source: feces

ncbi_organism_name: Acidaminococcus hominis

ncbi_submitter: Institute Of Microbiology


ncbi_organism_name: Mycobacterium tuberculosis TB_RSA139

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: Portugal: Alentejo

ncbi_organism_name: Kosakonia sp. MH5

ncbi_submitter: Universidade de Evora


ncbi_country: Turkey

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Burkholderia pseudomallei


ncbi_isolation_source: soil

ncbi_organism_name: Tabrizicola soli

ncbi_strain_identifiers: CCTCC AB 2017177

ncbi_submitter: Chinese academy of forestry


ncbi_organism_name: uncultured Desulfobacterales bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Boston; MA

ncbi_isolation_source: ICU

ncbi_organism_name: Staphylococcus aureus M0404


ncbi_organism_name: Streptomyces althioticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Corynebacterium pseudogenitalium ATCC 33035

ncbi_submitter: Baylor College of Medicine


ncbi_country: China: Guangxi Chongzuo

ncbi_organism_name: Tomitella gaofuii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA: Texas

ncbi_isolation_source: bovine feces

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_country: Panama: Bocas del Toro; Punta Caracol

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stony Brook University


ncbi_country: South Africa: Durban

ncbi_isolation_source: Rectum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Spain

ncbi_isolation_source: throat

ncbi_submitter: University of Antwerpen


ncbi_country: Portugal: Porto

ncbi_isolation_source: Intraabdominal infection

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: China

ncbi_isolation_source: duck cloacal

ncbi_organism_name: Salmonella enterica subsp. arizonae

ncbi_submitter: Sichuan Agricultural University


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Listeria welshimeri

ncbi_submitter: Cornell University


ncbi_country: USA: WA

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University of Washington


ncbi_country: France

ncbi_organism_name: Coxiella burnetii

ncbi_submitter: IHU mediterranee infection


ncbi_assembly_name: BSN31 closure

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_organism_name: uncultured Selenomonadales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Candidatus Nitromaritima sp.

ncbi_submitter: Tsinghua University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Nitrospinota/Tectimicrobiota group;p__Nitrospinota;c__Nitrospinia;o__Nitrospinales;f__Nitrospinaceae;g__Candidatus Nitromaritima;x__unclassified Candidatus Nitromaritima;s__Candidatus Nitromaritima sp.


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Xinjiang Agricultural University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: VNU-Institute of Microbiology and Biotechnology, Vietnam National University, Hanoi


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Psychrobacter sp. AOP29-E1-4

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IIT Roorkee


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Hyphomonas sp.


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: Monash University


ncbi_assembly_name: Rumen uncultured genome RUG13121

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-09672

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Serratia sp. CY80841

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY80841


ncbi_organism_name: Lawsonibacter asaccharolyticus

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: Canada: Near Fort McMurray in northeastern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Bacteroidetes bacterium UBA6183

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium UBA6183


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: chicken

ncbi_organism_name: Campylobacter coli

ncbi_submitter: United States Department of Agriculture


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Bulgaria

ncbi_isolation_source: Bulgarian homemade fermented milk

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_country: Sri Lanka

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: New Zealand: Canterbury region

ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The University of Auckland


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_isolate: Levilactobacillus brevis CIRM-BIA2515

ncbi_organism_name: Levilactobacillus brevis

ncbi_strain_identifiers: Levilactobacillus brevis CIRM-BIA2515

ncbi_submitter: INRAE


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_country: Netherlands

ncbi_isolation_source: Soil; The Netherlands

ncbi_organism_name: Desulfitobacterium sp. PCE1

ncbi_submitter: JGI


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Clostridiales bacterium UBA3293


ncbi_organism_name: uncultured Tenacibaculum sp.

ncbi_submitter: EMG


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Wuhan

ncbi_isolation_source: seawater layers

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Oceanology Chinese Academy of Sciences


ncbi_country: Iran: Zanjan

ncbi_isolation_source: Wheat rhizosphere

ncbi_organism_name: Pseudomonas sp. SWRI50

ncbi_submitter: KU Leuven


ncbi_isolation_source: Vaginal fluid

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Peru: Lima

ncbi_isolation_source: wildlife

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Andres Bello


ncbi_country: USA: Hawaii

ncbi_isolation_source: bamboo roots

ncbi_organism_name: Streptomyces sp. SID6673

ncbi_submitter: University of Wisconsin Madiso


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Acetobacter sp.


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: New Caledonia: Prony Bay

ncbi_isolation_source: carbonate chimney in Prony hydrothermal field

ncbi_organism_name: Alkaliphilus serpentinus

ncbi_strain_identifiers: LacT

ncbi_submitter: Mediterranean Institute of Oceanography (MIO), UMR 7294


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: ISI 4

ncbi_isolate: ISI 4

ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: ISI 4

ncbi_submitter: AARHUS UNIVERSITY, DEPARTMENT OF FOOD SCIENCE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Hydrogenophaga sp.


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: Nepal

ncbi_isolation_source: Hospital Patient Sample

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: La Trobe University


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Kiritimatiellota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: France

ncbi_isolation_source: Cecum

ncbi_organism_name: Clostridium sp. MD294

ncbi_submitter: Bioaster


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Huzhou cdc


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_assembly_name: Rumen uncultured genome RUG10411

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Seed

ncbi_organism_name: Rhizobium sp. CFBP 13644

ncbi_submitter: INRAE


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: USA: VA

ncbi_isolation_source: Environment

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. CFSAN000832


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: New York City

ncbi_isolation_source: human blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Mount Sinai School of Medicine


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: the seqafrica consortium


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: China: Henan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_country: Bangladesh

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: International Centre for Diarrhoeal Disease Research Bangladesh, Dhaka, Bangladesh


ncbi_country: USA: New York State

ncbi_organism_name: Dickeya dianthicola

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Bulgaria

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_country: China: Anhui

ncbi_submitter: University of Science and Technology of China


ncbi_isolation_source: Drainage fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Anhui Medical University


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Humibacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 3-105-05_S1_C3

ncbi_submitter: IGS


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides acidifaciens


ncbi_country: China: Dongshan; Fujian Province

ncbi_isolation_source: rotting seaweed in seawater

ncbi_organism_name: Catenovulum agarivorans DS-2

ncbi_submitter: State Oceanic Administration


ncbi_organism_name: Akkermansia sp.


ncbi_organism_name: Paenibacillus macerans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Amycolatopsis balhimycina DSM 5908

ncbi_submitter: McMaster University


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Dyella sp.


ncbi_organism_name: [Lactobacillus] rogosae

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii


ncbi_country: United Kingdom

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Public Health England

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: feces

ncbi_organism_name: Rodentibacter pneumotropicus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Rhizobium sp. Leaf311

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces sp. NBC_00178

ncbi_submitter: Technical University of Denmark


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Peptoanaerobacter stomatis

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Norway: Tautra; Trondheim fjord

ncbi_isolation_source: sea water [ENVO:00002149]

ncbi_organism_name: Streptomyces griseolus

ncbi_submitter: SINTEF Industry


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Portland State University


ncbi_country: Japan

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Nagoya University


ncbi_country: Serbia: Sirig

ncbi_organism_name: Xanthomonas arboricola pv. juglandis

ncbi_submitter: University of Exeter


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Porphyromonadaceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: Canada: Manitoba

ncbi_isolation_source: Animal - Avian-Yolk sac

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. SA20100349


ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Technical University of Munich


ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: University of Birmingham


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: University of Queensland


ncbi_organism_name: Ponticoccus sp. SC2-22

ncbi_submitter: Shantou University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_organism_name: Vallitaleaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Spain: Asturias

ncbi_organism_name: Tetragenococcus koreensis

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Lactobacillus amylovorus CAG:719

ncbi_submitter: DTU


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Toho University


ncbi_organism_name: Simonsiella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Rhizobium sp. PP-F2F-G20b

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces sp. NPDC050610

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia: Victoria; Corner Inlet

ncbi_submitter: Federation University Australia


ncbi_country: USA: MD

ncbi_organism_name: Shigella dysenteriae

ncbi_strain_identifiers: DMB SH116

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_isolation_source: urinogenital fluid

ncbi_organism_name: Neisseria gonorrhoeae MU_NG18

ncbi_submitter: Read Laboratory, Emory University


ncbi_assembly_name: MMC-glpU

ncbi_isolate: synthetic

ncbi_organism_name: Mycoplasma mycoides subsp. capri

ncbi_submitter: SIB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma mycoides;sb__Mycoplasma mycoides subsp. capri


ncbi_assembly_name: Escherichia coli CVM N36903PS v. 1.0

ncbi_country: USA

ncbi_isolation_source: Farm

ncbi_strain_identifiers: CVM N36903PS

ncbi_submitter: FDA


ncbi_country: Brazil: Toledo

ncbi_submitter: UFPR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Plant

ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: University of California


ncbi_country: Taiwan

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_isolation_source: trophosome tissue of the deep-sea tubeworm Tevnia jerichonana; host species originated from Tica vent at 9deg 50  N East Pacific Rise

ncbi_submitter: Georg-August-University Goettingen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;s__endosymbiont of Tevnia jerichonana;x__endosymbiont of Tevnia jerichonana (vent Tica)


ncbi_isolation_source: Sheep

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Marinovum algicola


ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: New York

ncbi_isolation_source: milk

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cornell University


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Amoebophilaceae bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: Ornithinimicrobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_country: Denmark: Ega

ncbi_isolation_source: activated sludge from Ega_18-Q3-R5-49

ncbi_organism_name: Candidatus Aalborgiella aggregata

ncbi_submitter: Aalborg University


ncbi_country: China: Guangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Campylobacter fetus subsp. testudinum

ncbi_submitter: Guangzhou University of Chinese Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Klebsiella sp. 4_1_44FAA

ncbi_submitter: Broad Institute


ncbi_country: Italy

ncbi_isolation_source: Broiler carcasses

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bologna


ncbi_country: Pakistan: Punjab

ncbi_isolation_source: Plant stem

ncbi_organism_name: Pectobacterium atrosepticum

ncbi_submitter: University of Agriculture Faisalabad


ncbi_isolate: mankind

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_strain_identifiers: mankind

ncbi_submitter: GH St Louis-Lariboisiere


ncbi_country: Egypt

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Wageningen Plant Research


ncbi_country: Russia:Cape Chukochii; East Siberian Sea

ncbi_isolation_source: permafrost sediment

ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: Princeton University


ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: crude oil

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_strain_identifiers: NGH Pa43

ncbi_submitter: King Abdullah University Science and Technology


ncbi_country: Finland

ncbi_isolation_source: Human

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1303


ncbi_organism_name: Actinomyces marseillensis

ncbi_submitter: URMITE


ncbi_organism_name: Streptomyces sp. LMG1-1-1.1

ncbi_submitter: Interfaculty Research Collaboration “One Health” of the University of Bern


ncbi_assembly_name: IMG-taxon 2687453696 annotated assembly

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: Japan:Hokkaido; Jozankei hot spring

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Dissulfurispira thermophila

ncbi_submitter: Hokkaido University


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: rhizosphere soil culture M44

ncbi_organism_name: Brevibacterium sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Streptomyces sp. NPDC006197

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Clostridium sp. CAG:245


ncbi_country: China: Sichuan

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-424-M03

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: blood from patient with pneumonia

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: nivip

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_organism_name: uncultured Smithella sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptomyces albidoflavus


ncbi_organism_name: Euzebya sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA

ncbi_isolation_source: HIV infected cell supernatant

ncbi_organism_name: Mycoplasmopsis fermentans MF-I1

ncbi_submitter: IGS


ncbi_country: Germany

ncbi_isolation_source: Cattle

ncbi_organism_name: Escherichia coli

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus argenteus

ncbi_strain_identifiers: ACVAC

ncbi_submitter: NISC - NIH Intramural Sequencing Center


ncbi_isolation_source: human gut

ncbi_organism_name: Peptoniphilaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: Pennsylvania; Centralia

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Michigan State University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__environmental samples;s__uncultured Candidatus Competibacteraceae bacterium


ncbi_organism_name: Undibacterium danionis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_submitter: Finnish Food Authority


ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: Streptomyces griseoincarnatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Variovorax sp. LjRoot290

ncbi_submitter: Aarhus University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Vibrio breoganii

ncbi_strain_identifiers: CAIM 1829


ncbi_organism_name: Streptomyces sp. NPDC001796


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Streptomyces mirabilis


ncbi_organism_name: uncultured Treponema sp.


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Jiangsu Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Paraburkholderia rhynchosiae

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Bacteroides fragilis


ncbi_organism_name: Lactococcus lactis

ncbi_strain_identifiers: KW

ncbi_submitter: Konkuk University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Acidaminococcus sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Salmonella sp. SAL04151

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG13271

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Subdoligranulum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Alistipes shahii

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Fort Lauderdale Research & Education Center; Florida

ncbi_isolation_source: termite gut

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Ghana: Tamale

ncbi_isolation_source: Mutton

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: Caecum

ncbi_organism_name: Mucispirillum schaedleri


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Gaetbulibacter aestuarii

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Notre Dame


ncbi_isolate: Urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR 1137 IAME


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: China: Hangzhou

ncbi_organism_name: Priestia flexa T6186-2

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_country: Brazil: Minas_Gerais_1

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Universidade Federal de Vicosa


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Sporomusaceae bacterium UBA864

ncbi_submitter: University of Queensland


ncbi_country: China: Jinan

ncbi_isolation_source: Bumble bee gut

ncbi_organism_name: Gilliamella sp.

ncbi_submitter: China Agricultural University


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Burkholderia sp. AU36459

ncbi_submitter: University of Michigan


ncbi_country: China: Guangdong

ncbi_isolation_source: coffee beans

ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Rhodobacter sp.

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Neisseria flavescens

ncbi_submitter: EMG


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: California Department of Public Health

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Streptomyces chartreusis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Virginia Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1007

ncbi_submitter: Broad Institute


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Innoviva Specialty Therapeutics


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: China: Beijing

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: South Korea: ginseng field soil

ncbi_isolation_source: ginseng field soil

ncbi_organism_name: Phenylobacterium hankyongense

ncbi_submitter: Huazhong Agricultural university


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Nocardioides sp.

ncbi_submitter: EMG


ncbi_country: USA: Iowa; Ames

ncbi_isolation_source: Pumpkin

ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Iowa State University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Calothrix sp. NIES-4071

ncbi_submitter: Toyohashi University of Technology


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Viet Nam: Tam Dao National Park

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Kitasatospora sp. NBC_00070

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: France: Munster; Alsace

ncbi_organism_name: Borreliella garinii IPT120

ncbi_submitter: Animal Epidemiology Unit - INRA - Saint Genès Champanelle; CNR Borrelia - Pasteur Institute - Paris


ncbi_organism_name: Klebsiella sp. 92357

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: blood

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University of Pittsburgh


ncbi_country: Germany: Altingen; artesian well

ncbi_isolation_source: enrichment culture sampled from a low-nitrate anoxic artesian well

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: University of Tuebingen


ncbi_isolation_source: Fagus sylvatica

ncbi_organism_name: Paraburkholderia sp. BCC1886

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: China: Hunan Province; Lengshujiang

ncbi_isolation_source: soil sample from arsenic pollution region

ncbi_organism_name: Agrobacterium sp. JL28

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bifidobacterium catenulatum


ncbi_organism_name: Streptomyces pristinaespiralis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Canada: Lunenberg County; NS

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Public Health Agency of Canada


ncbi_country: USA: Missouri; Kansas City

ncbi_isolation_source: Rectal fecal grab samples from finishing cattle in a commercial feedlot

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: Colorado State University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Rothia sp. HC945

ncbi_submitter: Qingdao Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. HC945


ncbi_country: China

ncbi_organism_name: Actinomyces sp. zg-332

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA: Cambridge; MA

ncbi_organism_name: Escherichia coli

ncbi_submitter: MIT


ncbi_country: USA

ncbi_submitter: Medicine / Division of Infectious Diseases, University of North Carolina


ncbi_country: China: Sichuan; Chengdu

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Brazil

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Treponema sp.


ncbi_submitter: Makerere University


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: Univeristy of Aberdeen


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Thermus thermophilus HB27

ncbi_submitter: Skolkovo Institute of Science and Technology


ncbi_submitter: King Abdulaziz University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada: Ontario

ncbi_organism_name: Corynebacterium hadale

ncbi_submitter: National Microbiology Laboratory/ Public Health Agency of Canada


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: India: Assam

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Syntrophorhabdaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Malaysia

ncbi_isolation_source: milk curd

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Universiti Putra Malaysia


ncbi_organism_name: Nocardia sp. NPDC004568

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolate: AOP1_C1_surf _bin _15

ncbi_organism_name: Corynebacterium variabile

ncbi_strain_identifiers: AOP1_C1_surf _bin _15

ncbi_submitter: Genoscope


ncbi_assembly_name: IMG-taxon 2675903050 annotated assembly

ncbi_organism_name: Amycolatopsis xylanica

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Gaiellaceae bacterium


ncbi_organism_name: Gilliamella apicola


ncbi_organism_name: uncultured Ignatzschineria sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Xylanibacter rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus delphini

ncbi_submitter: Utrecht University


ncbi_country: Malaysia: Terengganu

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Malaya


ncbi_country: Spain

ncbi_isolation_source: gut

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Ramon y Cajal


ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: waterfall

ncbi_organism_name: Enterobacter cancerogenus


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Lactobacillus paragasseri

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: South Korea: Seongnam

ncbi_isolation_source: Natto (fermented product)

ncbi_organism_name: Bacillus subtilis subsp. natto

ncbi_submitter: University of Texas at Arlington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. natto


ncbi_country: USA: National Naval Medical Center; Bethesda; MD

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii Naval-13

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Portugal: Porto

ncbi_isolation_source: human feces

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: UCIBIO@Requimte. Faculty of Pharmacy University of Porto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: Layton; FL

ncbi_isolation_source: marine sponge

ncbi_organism_name: Myxococcales bacterium FL481

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Argentina

ncbi_isolation_source: Urine sample

ncbi_organism_name: Corynebacterium phoceense

ncbi_submitter: Federal University of Bahia


ncbi_country: Belgium: Brussels

ncbi_isolation_source: blood

ncbi_submitter: Cliniques Universitaires Saint-Luc


ncbi_country: Denmark: Hjorring

ncbi_isolation_source: activated sludge from Hjor_18-Q3-R7-51

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Aalborg University


ncbi_assembly_name: Rumen uncultured genome RUG112

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: Rumen uncultured genome RUG216


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Lasioglossum fulvicorne


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: USDA-ARS


ncbi_organism_name: Raoultella planticola

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: China: Zhejiang

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: University of Zurich


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli M1

ncbi_submitter: Department of Pediatrics, Washington University School of Medicine


ncbi_organism_name: Salinarimonas sp.


ncbi_organism_name: uncultured Peptoniphilaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Croatia: Split

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Acinetobacter johnsonii


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shantou University Medical College


ncbi_organism_name: Candidatus Methylopumilus sp.

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: Pyrinomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China: Guangdong

ncbi_isolation_source: kefir grains

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Paenibacillus sp. FSL M8-0334

ncbi_submitter: Penn State


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Anaerotignum sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_strain_identifiers: VPI DR56BR1116

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Spirochaetales;f__Treponemataceae;g__Treponema;s__Treponema socranskii;sb__Treponema socranskii subsp. socranskii;x__Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536


ncbi_country: Senegal: Thiaware

ncbi_isolation_source: groundnut field

ncbi_organism_name: Bradyrhizobium vignae

ncbi_submitter: IRD


ncbi_assembly_name: freshwater MAG --- Loc090721-8m_bin-183

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Desulfomonile sp.

ncbi_submitter: BILS


ncbi_isolation_source: rat gut

ncbi_organism_name: Lachnospiraceae bacterium UBA7133

ncbi_submitter: University of Queensland


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan Hospital of Fudan University


ncbi_organism_name: Alicycliphilus sp.

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-1156

ncbi_organism_name: uncultured Methylocystaceae bacterium


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_assembly_name: freshwater MAG --- LaPlata-b_bin-2967


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Scatomonas merdigallinarum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Scatomonas;s__Candidatus Scatomonas merdigallinarum


ncbi_organism_name: Clostridioides difficile T20

ncbi_submitter: LPBA


ncbi_organism_name: Planktothrix sp. PCC 11201

ncbi_submitter: Genoscope CEA


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_country: USA: Missouri

ncbi_isolation_source: ear

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: University of Oklahoma Health Sciences Center


ncbi_country: Brazil

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium loti

ncbi_submitter: Univ Estadual Paulista UNESP/FCAV


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China

ncbi_organism_name: Boudabousia liubingyangii

ncbi_submitter: China CDC


ncbi_organism_name: Comamonas sp. wu1-DMT

ncbi_submitter: IIT Bombay


ncbi_organism_name: Faecousia sp.


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: India: Assam; Guwahati

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus gallinarum

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Paenibacillaceae bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Selenomonadales bacterium

ncbi_submitter: EMG


ncbi_submitter: Purdue University


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Citellus undulatus

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Arthrobacter ulcerisalmonis

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: gut

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Stellenbosch University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Veillonellaceae bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: human eye

ncbi_submitter: NATIONAL FOOD INSTITUTE - DTU


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UFMG


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_submitter: Universidad del Pais Vaso/Euskal Herriko Unibertsitatea (UPV/EHU)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: University of California Berkeley


ncbi_organism_name: uncultured Cellvibrionaceae bacterium


ncbi_organism_name: Amycolatopsis thermoflava

ncbi_submitter: BGI Research


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Nanjing University


ncbi_organism_name: Parabacteroides distasonis


ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Candidatus Marinacidobacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Vicinamibacteria;o__Candidatus Marinacidobacterales;f__Candidatus Marinacidobacteraceae;g__Candidatus Marinacidobacterium;x__unclassified Candidatus Marinacidobacterium;s__Candidatus Marinacidobacterium sp.


ncbi_organism_name: Prevotellaceae bacterium


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: Iowa State University


ncbi_organism_name: Prochlorococcaceae cyanobacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Bigelow Laboratory For Ocean Sciences


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Shandong First Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: South China Agriculture University


ncbi_assembly_name: freshwater MAG --- Ki3-D3_bin-0414

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_assembly_name: freshwater MAG --- Loc090116-1m_bin-0586

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Chromatiales bacterium LBARH1


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Paenibacillus oleatilyticus

ncbi_submitter: Botswana international University of Science and Technology


ncbi_country: Canada: Near Fort McMurray in northeastern Alberta

ncbi_isolation_source: waste water

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA6175


ncbi_country: Australia: Brisbane

ncbi_isolation_source: River

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Bacteroides fragilis CL03T12C07

ncbi_submitter: Broad Institute


ncbi_organism_name: Fusobacterium nucleatum


ncbi_country: USA: OH

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: rat gut

ncbi_organism_name: Lachnospiraceae bacterium UBA7199


ncbi_organism_name: Burkholderia pseudomallei NRF80Bp1

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Fibrobacterota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;x__unclassified Fibrobacterota;s__Fibrobacterota bacterium


ncbi_country: USA: NC

ncbi_isolation_source: porcine pig intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Lincoln County; Oregon

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_country: Norway

ncbi_isolation_source: Salmon loins

ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: NTNU


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_assembly_name: R-75724 assembly

ncbi_organism_name: Burkholderia sola

ncbi_submitter: LM-UGent


ncbi_organism_name: Paraglaciecola sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: USA: California

ncbi_isolation_source: environmental isolate

ncbi_submitter: UC Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: blood and spinal fluid

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Chiba University


ncbi_isolation_source: Colon


ncbi_country: USA: San Marcos; TX

ncbi_isolation_source: Wild adult 2.1

ncbi_organism_name: Bacillus sp. S0628

ncbi_submitter: Texas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. S0628


ncbi_isolation_source: caecum

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: uncultured bacterium


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: Bacillus stercoris

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Butyricimonas faecihominis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Pseudarthrobacter oxydans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_assembly_name: freshwater MAG --- F-5_bin-065

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Desulfuromonadales bacterium

ncbi_submitter: BILS


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-4218

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Armatimonadetes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__environmental samples;s__uncultured Armatimonadetes bacterium


ncbi_country: Canada: Brigham; Quebec

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Pseudomonas sp. B21-040

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_isolation_source: Guttural pouch

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Secundilactobacillus hailunensis

ncbi_submitter: Northeast Agricultural University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_assembly_name: freshwater MAG --- Umea2_bin-2142

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Denitrificimonas caeni

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Antarctica: Robinson Ridge

ncbi_isolation_source: pooled data from three different soil samples

ncbi_organism_name: Candidatus Eremiobacter antarcticus

ncbi_submitter: nstitute of Tibetan Plateau Research, Chinese Academy of Sciences

ncbi_taxonomy: d__Bacteria;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Candidatus Eremiobacterales;f__Candidatus Eremiobacteraceae;g__Candidatus Eremiobacter;s__Candidatus Eremiobacter antarcticus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Candidatus Eremiobacterales;f__Candidatus Eremiobacteraceae;g__Candidatus Eremiobacter;s__Candidatus Eremiobacter antarcticus


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_country: Slovenia: Domzale

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Biotechnical faculty, University of Ljubljana


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Neisseria flavescens


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Japan

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Yonsei University


ncbi_country: USA

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Ileo-caecum


ncbi_country: Greece

ncbi_isolation_source: Raw sheep milk

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: India

ncbi_organism_name: Streptomyces sp. AN-3

ncbi_submitter: Swami Rama Himalayan University


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Geodermatophilaceae bacterium

ncbi_submitter: Monash University


ncbi_assembly_name: freshwater MAG --- AM-2014-D3_bin-237

ncbi_organism_name: uncultured Chthonomonas sp.

ncbi_submitter: BILS


ncbi_country: China: Shandong

ncbi_isolation_source: commercial chicken farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: Switzerland: Basel

ncbi_isolation_source: clinical sample

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Desulfovibrio piger

ncbi_submitter: EMG


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_country: USA: Houston County; Alabama

ncbi_isolation_source: Field

ncbi_organism_name: Pseudomonas alabamensis

ncbi_submitter: University of Florida


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: the seqafrica consortium


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_organism_name: Bacillus sp. FSL L8-0287

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL L8-0287


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Brazil

ncbi_isolation_source: ready to eat dish

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW215-R3

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_country: Colombia: Tunja

ncbi_isolation_source: Gastric tissue

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Escuela Nacional de Ciencias Biologicas, Instituto Politecnico Nacional


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Oman

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Sultan Qaboos University


ncbi_isolation_source: metagenome

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Italy: Bussolengo

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium rousetti

ncbi_submitter: University of Bologna