ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Austria

ncbi_isolation_source: brain

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Institute of Microbiology


ncbi_assembly_level: Scaffold

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Zhejiang university


gtdb_representative: t

ncbi_country: India

ncbi_organism_name: Pseudacidovorax intermedius

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_assembly_level: Chromosome

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chung Shan Medical University


ncbi_organism_name: Escherichia coli 1350

ncbi_submitter: University Medical Center Utrecht


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_isolation_source: Jejunum

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Finland

ncbi_isolation_source: feces

ncbi_organism_name: Yersinia frederiksenii


ncbi_isolation_source: human gut

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: EMG


ncbi_country: Thailand: Samutsongkram

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Faculty of Public Health

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_country: Australia: Adelaide

ncbi_isolation_source: nasal tract

ncbi_organism_name: Corynebacterium accolens

ncbi_submitter: University of Adelaide


ncbi_country: Spain: Granada

ncbi_isolation_source: urine

ncbi_submitter: Hospital Universitario Virgen Macarena


ncbi_submitter: University of Veterinary Medicine Budapest


ncbi_country: Brazil

ncbi_isolation_source: Feces

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: China: Zhejiang

ncbi_isolation_source: Pickle Processing Wastewater

ncbi_organism_name: Maritimibacter fusiformis

ncbi_refseq_category: reference genome

ncbi_submitter: Zhejiang Agriculture and Forestry University

ncbi_type_material_designation: assembly from type material


ncbi_isolate: clinical

ncbi_isolation_source: clinical

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: clinical

ncbi_submitter: Faculty of Health Sciences


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Prevotella sp.


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Flavobacteriales bacterium UBA7443

ncbi_submitter: University of Queensland


ncbi_assembly_level: Complete Genome

ncbi_country: USA: California

ncbi_isolation_source: urine specimens

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Santa Clara University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: lung

ncbi_submitter: San Diego State University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Jahangirnagar University


ncbi_organism_name: Blautia hansenii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Eubacteriales bacterium


ncbi_organism_name: Streptomyces sp. bgisy100

ncbi_submitter: BGI Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Amycolatopsis azurea

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Nofima AS


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Alsobacter sp.

ncbi_submitter: Iowa State University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_assembly_name: IMG-taxon 2675903700 annotated assembly

ncbi_organism_name: Listeria ivanovii

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Streptomyces goshikiensis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Genotypic Technology


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: bacterium

ncbi_submitter: Inha University


ncbi_country: Slovenia: Piran; Adriatic Sea; Gulf of Piran

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Affiliated Hospital of Nanchang University, Nanchang University


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Acidimicrobiales bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Shanghai Ocean University


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus pettenkoferi

ncbi_submitter: BGI


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Xiamen University


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: leg wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Germany

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolate: Streptococcus mitis

ncbi_organism_name: Streptococcus mitis

ncbi_strain_identifiers: Streptococcus mitis

ncbi_submitter: UNIVERSITY COLLEGE LONDON


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_isolation_source: Distal colon


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Germany: Brandenburg; Erpe River

ncbi_isolation_source: urban river

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Laboratory

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: USA: Louisiana

ncbi_isolation_source: Moore swab

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: USA: Soudan Iron Mine; Minnesota

ncbi_isolation_source: brine fluids

ncbi_organism_name: Halothiobacillus sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: Umea university


ncbi_organism_name: Actinokineospora soli

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Streptomyces sp. NPDC040750

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Fayetteville; AR

ncbi_isolation_source: tissue

ncbi_organism_name: Staphylococcus agnetis

ncbi_submitter: University of Arkansas


ncbi_isolation_source: coastal sediment

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Nigeria: Ibadan

ncbi_isolation_source: soil from electronic waste dumpsite

ncbi_submitter: University of Ibadan, Nigeria


ncbi_organism_name: Candidatus Eutrophovita brisbanensis

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Candidatus Eutrophovita;s__Candidatus Eutrophovita brisbanensis


ncbi_country: China: Heilongjiang Province

ncbi_organism_name: Rhizobium binxianense

ncbi_submitter: Northeast Agricultural University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_organism_name: Stenotrophomonas geniculata

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Viet Nam: Vanfong Bay

ncbi_isolation_source: coral

ncbi_organism_name: Leeuwenhoekiella palythoae

ncbi_submitter: Ghent University


ncbi_assembly_name: freshwater MAG --- Ja1_bin-3508

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Gemmiger sp.

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_organism_name: Streptomyces sp. HSW2009

ncbi_submitter: University of Malaya


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: SC


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_organism_name: Rhodospirillales bacterium


ncbi_assembly_name: freshwater MAG --- MJ-2014-D1_bin-0762

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Chlorobium sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Helcococcus ovis

ncbi_submitter: University of Florida


ncbi_organism_name: Streptococcus agalactiae GB00986

ncbi_submitter: The J. Craig Venter Institute


ncbi_isolation_source: Iru-fermented African locust beans

ncbi_organism_name: Lysinibacillus irui

ncbi_submitter: University of Hohenheim


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Stanford University


ncbi_country: Viet Nam: An Giang

ncbi_isolation_source: urethral exudate

ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: PIHCM 20153

ncbi_submitter: Pasteur Institute of Ho Chi Minh City


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P46P

ncbi_submitter: South China Agricultural University


ncbi_country: India

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Institute for Research In Tuberculosis


ncbi_country: USA: Indiana

ncbi_isolation_source: human

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Pneumonia Response and Surveillance Laboratory (CDC)


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_country: USA: South Carolina

ncbi_isolation_source: bioreactor using biocathode as sole electron donor and carbon dioxide as sole carbon source; pH was maintained at 7.0

ncbi_organism_name: Desulfovibrio sp. MES5

ncbi_submitter: Argonne National Laboratory


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Corynebacterium propinquum

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Enterobacter sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: Australia: Corunna Lake

ncbi_isolation_source: sediments

ncbi_organism_name: Magnetococcales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID 4197

ncbi_submitter: University Hospital Regensburg


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Faeces


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mutans TCI-164

ncbi_submitter: JCVI


ncbi_country: China: Changsha

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Xiangya hospital, Central South University


ncbi_country: USA

ncbi_isolation_source: Strip loin

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Meat Animal Research Center-ARS


ncbi_country: Brazil: Ribeirao Preto

ncbi_isolation_source: stool

ncbi_submitter: State University of Campinas

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: Salmonella sp. SKLX107313

ncbi_submitter: Zhejiang university


ncbi_organism_name: Capnocytophaga leadbetteri


ncbi_country: Canada: Ontario

ncbi_isolation_source: Drainage basin water

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Manitoba


ncbi_isolation_source: water

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Helcococcus ovis

ncbi_submitter: University of Florida


ncbi_country: Spain

ncbi_isolation_source: Oral

ncbi_organism_name: Sanguibacter inulinus

ncbi_submitter: King's College London


ncbi_country: China: Zhejiang; Hangzhou

ncbi_organism_name: Burkholderia cenocepacia


ncbi_organism_name: Lachnospirales bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Actinomyces dentalis

ncbi_submitter: EMG


ncbi_submitter: China-Japan Friendship Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Peptococcaceae bacterium UBA5356

ncbi_submitter: University of Queensland


ncbi_isolation_source: surface water

ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: NAK 170

ncbi_submitter: Wageningen Plant Research


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_submitter: SurvCARE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Candidatus Competibacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;g__Candidatus Competibacter;x__unclassified Candidatus Competibacter;s__Candidatus Competibacter sp.


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Paramuribaculum sp.


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond E1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: University of Montreal


ncbi_country: USA: Piscataway; NJ

ncbi_organism_name: Streptomyces albus

ncbi_strain_identifiers: NRRL B-1685

ncbi_submitter: USDA/ARS/NCAUR

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Russia:Cape Chukochii; East Siberian Sea

ncbi_isolation_source: permafrost sediment

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Princeton University


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces of yak

ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Prevotella sp. CAG:1031

ncbi_submitter: DTU


ncbi_organism_name: Rubripirellula lacrimiformis

ncbi_submitter: Leibniz-Institute DSMZ German Collection of Microorganisms and Cell Cultures


ncbi_organism_name: Bifidobacterium sp. LCP19S3_E9

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Indonesia

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: Canada: Waterloo

ncbi_isolation_source: water from a groundwater well adjacent to an active municipal landfill in Southern Ontario

ncbi_organism_name: Sulfuritalea sp.

ncbi_submitter: University of Waterloo


ncbi_country: Thailand

ncbi_isolation_source: trachea

ncbi_organism_name: Burkholderia pseudomallei


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Cleveland Clinic


ncbi_country: USA

ncbi_organism_name: Ornithobacterium rhinotracheale

ncbi_submitter: Iowa State University


ncbi_isolation_source: plant environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Texas Tech University


ncbi_country: China: Sichuan

ncbi_isolation_source: slaughterhouse

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Micrococcus sp. 2A

ncbi_submitter: Anhui Agricultural University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Institute of Health


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Variovorax paradoxus

ncbi_submitter: Jeonbuk National University


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Desulfuromusa sp.

ncbi_submitter: California Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Tropheryma whipplei str. Art29

ncbi_submitter: ebi


ncbi_country: USA: Minnesota

ncbi_organism_name: Neisseria weaveri

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: South Korea: Hadong-gun; Gyeongsangnam-do

ncbi_isolation_source: gut

ncbi_organism_name: Poseidonibacter ostreae

ncbi_submitter: Nakdonggang National Institute of Biological Resources


ncbi_organism_name: Geobacillus subterraneus PSS2

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Columbia University Medical Center


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Greenland

ncbi_isolation_source: sea mud

ncbi_organism_name: Clostridium botulinum

ncbi_strain_identifiers: Prevot Ped 1

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Freshwater

ncbi_organism_name: Leptolyngbya boryana IU 594

ncbi_submitter: University of Haifa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Leptolyngbyales;f__Leptolyngbyaceae;x__Leptolyngbya group;g__Leptolyngbya;s__Leptolyngbya boryana;x__Leptolyngbya boryana IU 594


ncbi_country: Brazil: Botucatu

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_submitter: Toho university


ncbi_country: USA: Oregon


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: France: Paris

ncbi_isolation_source: blood

ncbi_organism_name: Bartonella henselae

ncbi_submitter: Anses UMR BIPAR


ncbi_organism_name: Anaerotignum faecicola

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Australia: VIC

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Dietzia cinnamea


ncbi_country: Mexico: Coahuila; Cuatro Cienegas

ncbi_isolation_source: pond water enriched with phosphorus and nitrogen

ncbi_organism_name: Pseudomonas sp. 21C1

ncbi_submitter: Instituto de Ecologia


ncbi_country: Russia: Moscow

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: cheese

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Queensland


ncbi_country: USA: Washington DC

ncbi_submitter: WRAIR


ncbi_submitter: Zhejiang University


ncbi_isolation_source: catfish

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Veterinary Medicine


ncbi_organism_name: Yoonia maricola

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Institute of Environmental Science and Research


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: BGI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,5,12:i


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Bacteroidales bacterium UBA5733

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA5733


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Switzerland

ncbi_isolation_source: Emmental

ncbi_organism_name: Lentilactobacillus parabuchneri

ncbi_submitter: University of Bern


ncbi_country: China: Fujian

ncbi_organism_name: Dickeya fangzhongdai

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Acidovorax sp. Root70

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: soil

ncbi_organism_name: Variovorax sp. WS11

ncbi_submitter: University of East Anglia


ncbi_assembly_name: Rumen uncultured genome RUG766

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: USA: NY

ncbi_isolation_source: bovine cow uterus

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Jishou

ncbi_isolation_source: potassium feldspar mining area

ncbi_organism_name: Ensifer adhaerens

ncbi_submitter: Jishou University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: South China Sea

ncbi_organism_name: Streptomyces nanshensis

ncbi_submitter: Beijing Institute of Genomics, Chinese Academy of Sciences


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter chengduensis

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Denmark: Damhusaen

ncbi_isolation_source: activated sludge from Damh_18-Q3-R51-60

ncbi_organism_name: Rhodocyclales bacterium

ncbi_submitter: Aalborg University


ncbi_country: Netherlands

ncbi_isolation_source: curry cream soup

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: TIFN


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Institute of Biochemistry and Biophysics of the Polish Academy of Sciences


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite de Limoges


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Agrobacterium cavarae

ncbi_submitter: Academia Sinica


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: University of Lome


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: uncultured Herminiimonas sp.


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Leptospiraceae bacterium


ncbi_organism_name: uncultured Chitinophagales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;x__environmental samples;s__uncultured Chitinophagales bacterium


ncbi_organism_name: uncultured Nitrospirales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: INDICASAT AIP


ncbi_organism_name: uncultured Desulfosarcinaceae bacterium


ncbi_submitter: University of Sevilla, Spain

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Cyclobacteriaceae;x__unclassified Cyclobacteriaceae;s__Candidatus Cyclobacteriaceae bacterium M2_1C_046


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 620

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Candidatus Kuenenia sp.

ncbi_submitter: EPFL

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;x__unclassified Candidatus Kuenenia;s__Candidatus Kuenenia sp.


ncbi_organism_name: Dokdonella sp.


ncbi_organism_name: uncultured Chitinophaga sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: bacterium 1xD42-87

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;x__unclassified Cyanobacteriota/Melainabacteria group;s__Cyanobacteriota/Melainabacteria group bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: IZSM-Portici


ncbi_organism_name: Eggerthellaceae bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudonocardia halophobica

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Richmond Mine ABmuck location

ncbi_organism_name: Nitrospirae bacterium UBA4572

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__unclassified Nitrospirota;s__Nitrospirae bacterium UBA4572


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Ningxia

ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Senegal: Niokolo-Koba National Park

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: USA: Maine

ncbi_isolation_source: hospital patient

ncbi_submitter: University of Maine at Presque Isle


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Norway

ncbi_isolation_source: skin lesion

ncbi_organism_name: Tenacibaculum finnmarkense genomovar ulcerans

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ICMR-National Institute of Occupational Health


ncbi_organism_name: Desulfocapsa sulfexigens DSM 10523

ncbi_submitter: Aarhus University, Aarhus, Denmark


ncbi_assembly_name: Rumen uncultured genome RUG14586

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroidales bacterium


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Toho University


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Acetofilamentum sp.

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Denmark: Kalundborg

ncbi_isolation_source: activated sludge from Kalu_18-Q3-R12-55

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_country: USA

ncbi_isolation_source: milk

ncbi_organism_name: Paenibacillus odorifer

ncbi_submitter: Cornell University


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Nitrosospira lacus

ncbi_submitter: MDA


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_country: USA: Looe Key National Marine Sanctuary; Florida

ncbi_isolation_source: coral mucus

ncbi_organism_name: Flavobacteriales bacterium UBA6051

ncbi_submitter: University of Queensland


ncbi_country: USA: San Diego Bay; CA

ncbi_isolation_source: swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Olsenella uli

ncbi_submitter: EMG


ncbi_country: Italy: Budduso

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Monash University


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_organism_name: uncultured Devosia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Antarctica: Ace Lake

ncbi_isolation_source: saline lake water

ncbi_organism_name: Candidatus Tenebribacter davisii

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__;g__Candidatus Tenebribacter;s__Candidatus Tenebribacter davisii

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;x__Candidatus Cloacimonadales incertae sedis;g__Candidatus Tenebribacter;s__Candidatus Tenebribacter davisii


ncbi_country: China: Yunnan

ncbi_isolation_source: Rice flour product

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Candidatus Enterococcus avicola

ncbi_submitter: Quadram Institutte


ncbi_country: Switzerland

ncbi_isolation_source: cheese starter culture

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Agroscope


ncbi_organism_name: Bacillus paranthracis


ncbi_country: USA: Northfield

ncbi_isolation_source: Zebrafish tank water

ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: University of Minnesota, Twin Cities


ncbi_organism_name: Alteripontixanthobacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Cape Town; Rondebusch

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Bundeswehr Insitute of Microbiology


ncbi_country: USA: Iowa

ncbi_isolation_source: lung

ncbi_organism_name: Mannheimia haemolytica MhSwine2000

ncbi_submitter: National Animal Disease Center


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: Slurry

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Nottingham


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: bloodstream infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IMPaM(UBA/CONICET)-Facultad de Medicina UBA


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: AAFC


ncbi_country: Germany: Jena

ncbi_isolation_source: Red-pigmented microbial biofilm developed on the inner wall of a bioreactor

ncbi_organism_name: Fermentimonas caenicola

ncbi_submitter: Darwin Bioprospecting Excellence SL


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Antarctica

ncbi_organism_name: Microbacterium sp. PAMC22086

ncbi_submitter: Korea University


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Radiation Medicine


ncbi_country: USA: Missouri; Kansas City

ncbi_isolation_source: Rectal fecal grab samples from a commercial feedlot

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: Colorado State University


ncbi_country: South Korea: Geoje Island

ncbi_isolation_source: coastal seawater

ncbi_organism_name: Sulfitobacter geojensis

ncbi_submitter: Yonsei University


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: EMG


ncbi_country: Japan

ncbi_isolation_source: River

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Russia: Moscow

ncbi_isolation_source: derived from the strain Pseudomonas aeruginosa ATCC 27853

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 122 (4-6851606)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 122 (4-6851606)


ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: National Chung Cheng University


ncbi_organism_name: Oribacterium sinus


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: UCONNMISEQ


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Patescibacteria group bacterium UBA4664

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA4664


ncbi_country: Morocco

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus schleiferi

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Veillonella sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: USA

ncbi_isolation_source: wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Medicine / Division of Infectious Diseases, University of North Carolina


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China: Chengdu

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Christensenellaceae bacterium


ncbi_submitter: USDA-ARS


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Oregon State University


ncbi_submitter: OARSA, CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bovismorbificans;x__Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal617


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Lactobacillus intestinalis


ncbi_country: United Kingdom

ncbi_isolation_source: Oral

ncbi_organism_name: Gemella sp. 19428wG2_WT2a

ncbi_submitter: King's College London


ncbi_organism_name: Coprobacter fastidiosus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Chongqing

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: XQ

ncbi_submitter: Third Military Medical University


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Synechococcaceae bacterium WB9_3_282

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Pakistan: Faisalabad

ncbi_submitter: National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: South Korea

ncbi_organism_name: Corynebacterium glutamicum

ncbi_strain_identifiers: BE

ncbi_submitter: Korea Advanced Institute of Science and Technology


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Sphingobacterium multivorum


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio harveyi;x__Vibrio harveyi NBRC 15634 = ATCC 14126 = KCTC 12724


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Micrococcales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Streptomyces sp. S10(2018)

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: USA: MD

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_isolation_source: soil

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad del Desarrollo


ncbi_isolation_source: lung

ncbi_submitter: Ares Genetics


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Puniceispirillum sp.

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;g__Candidatus Puniceispirillum;x__unclassified Candidatus Puniceispirillum;s__Candidatus Puniceispirillum sp.


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Canada: Quebec

ncbi_isolation_source: dairy milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: McGill University


ncbi_assembly_name: IMG-taxon 2600255287 annotated assembly

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: Thailand: Thung Chang

ncbi_isolation_source: termite gut

ncbi_organism_name: Holosporaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Antarctica: Ace Lake

ncbi_isolation_source: saline lake water

ncbi_organism_name: Candidatus Susulua stagnicola

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Omnitrophota;c__;o__;f__;g__Candidatus Susulua;s__Candidatus Susulua stagnicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;g__Candidatus Susulua;s__Candidatus Susulua stagnicola


ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolate: plant environment

ncbi_organism_name: Microbacterium sp. che218

ncbi_strain_identifiers: plant environment;che218

ncbi_submitter: The Institute of Enology and Viticulture, University of Yamanashi


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Halothiobacillus sp.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Alloprevotella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Jyvaskyla


ncbi_organism_name: Mangrovimonas cancribranchiae

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: Intestine

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: Wuhan

ncbi_isolation_source: seawater layers

ncbi_organism_name: Microbacterium schleiferi

ncbi_submitter: Institute of Oceanology Chinese Academy of Sciences


ncbi_country: USA: near Flagstaff; AZ

ncbi_isolation_source: plague epizootic in a Gunnison s prairie dog colony

ncbi_organism_name: Yersinia pestis FV-1

ncbi_submitter: TGen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;x__Yersinia pestis FV-1


ncbi_country: USA: Austin

ncbi_organism_name: Gilliamella apis

ncbi_submitter: University of Texas at Austin


ncbi_country: Germany

ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_organism_name: Bacillus cereus

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Axillary-groin Swab

ncbi_organism_name: Microbacterium sp. p3-SID336

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: China: Henan

ncbi_isolation_source: liver

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_submitter: Los Alamos National Laboratory (LANL), National Microbial Pathogen Data Resource (NMPDR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Photobacterium;s__Photobacterium damselae;sb__Photobacterium damselae subsp. damselae;x__Photobacterium damselae subsp. damselae CIP 102761


ncbi_country: USA: Florida

ncbi_isolation_source: citrus infected tissue

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: Citrus Research and Education center, Univerisity of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_organism_name: Rubrobacter sp.


ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Guangdong

ncbi_isolation_source: Gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA: Seattle

ncbi_isolation_source: blood

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: UW


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Australia

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: CSIRO


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Chloracidobacterium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Serratia nematodiphila

ncbi_submitter: The University of Burdwan


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Reyranella sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: Nanjing University


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Novosphingobium sp.


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Janibacter sp. G56

ncbi_submitter: Shanxi Medical University


ncbi_organism_name: Roseibium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Limosilactobacillus reuteri subsp. suis

ncbi_submitter: Veterinary Research Institute


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Anaeroplasma sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pecs Medical School


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Schinkia azotoformans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Eudoraea sp.


ncbi_organism_name: uncultured Porticoccaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_isolation_source: fermentation

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: China: China University of Geosciences Beijing

ncbi_isolation_source: sediment

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_assembly_name: freshwater MAG --- KR_bin-1256

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Salegentibacter sp.


ncbi_organism_name: Burkholderia sp. BCCCDS04

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Psychrobacter sp. AOP7-C1-12

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Streptomyces sp. NPDC018322

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Henriciella sp.

ncbi_submitter: Tsinghua University


ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: freshwater MAG --- Umea_bin-04333

ncbi_organism_name: uncultured Nitrosomonadales bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Atlantic Ocean

ncbi_isolation_source: hydrothermal fluid

ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: University of Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_organism_name: Priestia megaterium QM B1551

ncbi_submitter: Institute for Genome Sciences, University of Maryland School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Priestia;s__Priestia megaterium;x__Priestia megaterium QM B1551


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Paracoccaceae bacterium


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA

ncbi_isolation_source: blood from hospitalized preterm neonate

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Washington University in St. Louis


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eggerthella sp.


ncbi_organism_name: Bacillus anthracis str. SVA11

ncbi_submitter: National Veterinary Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus anthracis;x__Bacillus anthracis str. SVA11


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


gtdb_type_species_of_genus: t

ncbi_country: USA: Williamsberg; Iowa

ncbi_isolation_source: grassland field

ncbi_organism_name: Peterkaempfera griseoplana

ncbi_strain_identifiers: NRRL B-3064

ncbi_submitter: USDA/ARS/NCAUR


ncbi_assembly_name: freshwater MAG --- VK4_bin-0299

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine


ncbi_country: Russia

ncbi_isolation_source: not known


ncbi_country: China

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: China Agricultural University


ncbi_isolation_source: poultry meat product

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Bacteriology, Microbiology, Osaka Institute of Public Health


ncbi_organism_name: uncultured Desulfobacula sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: United Kingdom

ncbi_isolation_source: Effluent

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Nottingham


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: University of Florida


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: Vacuum packed veal

ncbi_organism_name: Clostridium gasigenes

ncbi_submitter: University of Zurich


ncbi_organism_name: Xanthomonas cannabis

ncbi_submitter: NSW Department of Primary Industries


ncbi_organism_name: uncultured Terrisporobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Tokyo University of Agriculture


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Bacteroidales bacterium UBA1192

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1192


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland: Bern

ncbi_organism_name: Staphylococcus sp. M0911

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Stony Brook University


ncbi_country: Burkina Faso

ncbi_isolation_source: Carcasses

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: HOSPITAL UNIVERSITARIO DONOSTIA


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: human gut

ncbi_organism_name: Lacrimispora saccharolytica

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: California

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: UCI 30

ncbi_submitter: USDA-ARS


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_country: Saudi Arabia: Thuwal

ncbi_isolation_source: activated sludge and biofilm from membrane bioreactor

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: not available: not collected

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: EPFL


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Helicobacter pylori HP260AFi

ncbi_submitter: Washington University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_country: Italy

ncbi_isolation_source: Ice-cream

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_country: China: Shenzhen

ncbi_organism_name: Veillonella parvula

ncbi_submitter: BGI


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cardiff University


ncbi_country: Cambodia: Phnom Penh

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita university


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: PA

ncbi_isolation_source: pleural cavity

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Candidatus Methylopumilus universalis

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Colon

ncbi_organism_name: Enterocloster clostridioformis


ncbi_country: USA: VA

ncbi_isolation_source: sediment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Enterobacteriaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: New York

ncbi_isolation_source: blood

ncbi_organism_name: Campylobacter ureolyticus

ncbi_submitter: University of Rochester Medical Center


ncbi_isolation_source: mouse gut metagenome


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolate: Lactiplantibacillus pentosus CNRZ1547

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_strain_identifiers: Lactiplantibacillus pentosus CNRZ1547

ncbi_submitter: INRAE


ncbi_country: Australia: Brisbane

ncbi_isolation_source: wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Bordetella hinzii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-01404

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_isolation_source: feces

ncbi_organism_name: Streptococcus sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Russia

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: NNIIEM name acad.I.N. Blokhina


ncbi_organism_name: Humibacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridium sp.

ncbi_submitter: AAFC


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Loyola University Chicago


ncbi_country: Switzerland: Kanton of Jura

ncbi_isolation_source: placenta

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: soil

ncbi_organism_name: Corallococcus sp. CA053C

ncbi_submitter: Aberystwyth University


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of East Anglia


ncbi_isolation_source: burned soil

ncbi_organism_name: Pedosphaera sp.

ncbi_submitter: Colorado State University


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Ruminococcaceae bacterium UBA4979

ncbi_submitter: University of Queensland


ncbi_country: USA: International Space Station

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: microbes were collected at JL-Dive100-S03

ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences


ncbi_assembly_name: Rumen uncultured genome RUG11114

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 5-63 micron fraction

ncbi_organism_name: Vibrio breoganii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: Fermented Fish

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Faculty of Agro-industry, Prince of Songkla University, wageningen university


ncbi_country: France: Moselle (Lorraine)

ncbi_submitter: Bundeswehr


ncbi_country: Italy: Emilia Romagna; Casola Valsenio

ncbi_isolation_source: stem

ncbi_organism_name: Arthrobacter sp. OVS8

ncbi_submitter: University of Florence


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HANYANG UNIVERSITY


ncbi_organism_name: Paenibacillus sp. 4624

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Sweden

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 3337-1

ncbi_submitter: Broad Institute


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus hirae


ncbi_country: USA: Grover; St. Louis County; Missouri

ncbi_isolation_source: Dorsal Fur

ncbi_organism_name: Staphylococcus delphini

ncbi_submitter: Washington University in St. Louis


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2687453683 annotated assembly

ncbi_organism_name: Paenibacillus sp. OK003

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Bradyrhizobium sp. SZCCHNS1050

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Beijing

ncbi_isolation_source: oral sawb

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: USA: Georgia; Tattnall County

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_country: USA: Georgia

ncbi_isolation_source: week R3 calf 57 isolate 3

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Food Animal Health and Mangement Program, University of Georgia


ncbi_country: Puerto Rico: Cabo Rojo

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_submitter: Universite de Sherbrooke


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 25681_3

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: week A5 calf 102 isolate 2


ncbi_isolation_source: Anopheles gambiae G3 adults

ncbi_organism_name: Elizabethkingia anophelis R26

ncbi_submitter: Stockholm University


ncbi_organism_name: Chitinophagaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: EMG


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Enterovibrio sp.


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Flavobacterium sp. W4I14

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Switzerland

ncbi_isolation_source: Mashed potatoes

ncbi_organism_name: Bacillus cytotoxicus

ncbi_submitter: University of Zurich


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Streptococcus agalactiae GB00083

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Streptomyces sparsogenes

ncbi_submitter: Tianjin University of Commerce


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Japan

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Yonsei University


ncbi_isolation_source: Soil

ncbi_organism_name: Pseudomonas sp. 44 R 15

ncbi_submitter: JOHN INNES CENTRE, NORWICH, UK.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__unclassified Pseudomonas;s__Pseudomonas sp. 44 R 15


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Texas

ncbi_isolation_source: abscess

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: Taiwan

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Chicago


ncbi_organism_name: Yersinia bercovieri

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Germany: Lusatia; lignite mining district

ncbi_isolation_source: water

ncbi_organism_name: Methylotenera sp.


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Subdoligranulum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus parauberis

ncbi_submitter: Kochi University


ncbi_country: USA: Massachusetts

ncbi_isolation_source: tongue scraping

ncbi_organism_name: candidate division SR1 bacterium

ncbi_submitter: Marine Biological Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Absconditibacteriota;x__unclassified Candidatus Absconditabacteria;s__candidate division SR1 bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Lacticaseibacillus paracasei subsp. paracasei

ncbi_submitter: Technical University of Denmark


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: SAR202 cluster bacterium

ncbi_submitter: SCOPE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium


ncbi_country: China: Shenzhen

ncbi_organism_name: Halomonas sp. DP3Y7-2

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 16ft depth

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium RBG_16_41_13


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Ruminococcus] lactaris


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: University of Iowa


ncbi_country: Malaysia

ncbi_isolation_source: Gastric Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Malaya-University of Western Australia


ncbi_country: China: Guangzhou

ncbi_organism_name: Corynebacterium pseudokroppenstedtii

ncbi_submitter: The Second Clinical College, Guangzhou University of Chinese Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-670-O07

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Canada: Manitoba

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Institute of Biotechnology, Univerity of Helsinki


ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_submitter: Naval Medical Research Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar thuringiensis;x__Bacillus thuringiensis serovar thuringiensis str. T01001


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China

ncbi_isolation_source: marine sediment

ncbi_organism_name: Leeuwenhoekiella palythoae

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: South Korea: Yangpyung region; Gyeonggi-do Province

ncbi_isolation_source: Doenjang

ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: Chung-Ang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC048182

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas sp. Qb1D2

ncbi_submitter: LMU Munich


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Atopobiaceae bacterium LCP21S3_F7

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chirstian Medical College


ncbi_organism_name: Candidatus Pelagibacter sp. Uisw_114

ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp. Uisw_114


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Sphingobacterium multivorum

ncbi_submitter: Universite Paris Saclay


ncbi_organism_name: Veillonella parvula

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces globisporus


ncbi_organism_name: uncultured Sulfurovum sp.


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Candidatus Deferrimicrobium sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Deferrimicrobiota;c__Candidatus Deferrimicrobia;o__Candidatus Deferrimicrobiales;f__Candidatus Deferrimicrobiaceae;g__Candidatus Deferrimicrobium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Deferrimicrobiota;c__Candidatus Deferrimicrobia;o__Candidatus Deferrimicrobiales;f__Candidatus Deferrimicrobiaceae;g__Candidatus Deferrimicrobium;x__unclassified Candidatus Deferrimicrobium;s__Candidatus Deferrimicrobium sp.


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: Cefas

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Vibrio cincinnatiensis

ncbi_submitter: beijing


ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: uncultured Pasteurella sp.


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: Dialister sp.


ncbi_organism_name: Firmicutes bacterium CAG:110

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:110


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: bacterium D16-50

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__unclassified Bacteria;s__bacterium (Candidatus Howlettbacteria) CG23_combo_of_CG06-09_8_20_14_all_37_9


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: SC


ncbi_organism_name: Ruminococcus callidus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: PARUL UNIVERSITY


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Fluviibacter sp.


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Marinobacter sp. DUT-3

ncbi_submitter: Dalian university of technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yangzhou University


ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Faculty of Veterinary Sciences and Animal Husbandry, SKUAST- Kashmir


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_assembly_name: freshwater MAG --- KTt_bin-0955

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: Australia: Davies Reef

ncbi_organism_name: bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: mine service water

ncbi_submitter: Northwestern University


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: cellulolytic enrichment culture from marsh water

ncbi_organism_name: Caldibacillus debilis GB1

ncbi_submitter: University of manitoba


ncbi_organism_name: Pseudaminobacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: Washington

ncbi_isolation_source: oyster sample

ncbi_organism_name: Vibrio parahaemolyticus 930

ncbi_submitter: NOAA Northwest Fisheries Science Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus 930


ncbi_country: Georgia: Tbilisi

ncbi_isolation_source: Commercial vial

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: NCDC Lugar Center


ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Halochromatium sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_country: China: Zhejiang

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Xiaoshan No.3 People's Hospital


ncbi_country: Greece

ncbi_isolation_source: soil

ncbi_organism_name: Pantoea sp. Cr_R21

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_country: Bangladesh: Dhaka

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Cardiff University


ncbi_isolation_source: gastric juice

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Fibrobacterota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;x__unclassified Fibrobacterota;s__Fibrobacterota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: EMG


ncbi_organism_name: Microcoleus sp. F6_C1

ncbi_submitter: Palacky University Olomouc


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leicester


ncbi_country: Arctic Ocean: Fram Strait

ncbi_isolation_source: Arctic sea ice floe

ncbi_organism_name: Salegentibacter sp. T436

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: China

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Kryptoniota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Kryptoniota;x__unclassified Candidatus Kryptoniota;s__Candidatus Kryptoniota bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stanford University


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: marine metagenome


ncbi_organism_name: Sphingobacterium mizutaii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: Tang lab


ncbi_isolation_source: Seafood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: metagenome

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sichuan University


ncbi_organism_name: Klebsiella sp. CN_Kp093

ncbi_submitter: Max Rubner-Institut


ncbi_country: South Korea

ncbi_isolation_source: crude oil contaminated seashore

ncbi_organism_name: Sphingopyxis sp. MWB1

ncbi_submitter: Korea Basic Science Institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Loyola University Chicago


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: foot burn

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Fudan University Shanghai Cancer Center


ncbi_organism_name: Empedobacter sp.


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Escherichia coli MS 187-1

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella sp. S014_62587

ncbi_submitter: Zhejiang University


ncbi_country: Australia

ncbi_isolation_source: environmental sample

ncbi_organism_name: Burkholderia pseudomallei BDU 2

ncbi_strain_identifiers: BDU 2

ncbi_submitter: Los Alamos National Laboratory