ncbi_country: China: Shenzhen

ncbi_isolation_source: shrimp

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: City University of Hong Kong


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Marinoscillum sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


gtdb_representative: f

ncbi_country: USA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of central Florida


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: bone

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto de Quimica


ncbi_assembly_level: Scaffold

ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: University of Chicago


ncbi_country: Australia

ncbi_organism_name: Leptospira borgpetersenii serovar Tarassovi

ncbi_strain_identifiers: Tar-Perepelitsin

ncbi_submitter: Massey University


ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 1499986

ncbi_submitter: Institute for Genome Sciences


ncbi_assembly_level: Complete Genome

ncbi_country: USA: Kansas

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA/ARS


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-1817

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Geobacter sp.

ncbi_submitter: BILS


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Streptococcus pyogenes MGAS315

ncbi_submitter: Lab of Human Bacterial Pathogenesis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pyogenes;x__Streptococcus pyogenes serotype M3;x__Streptococcus pyogenes MGAS315


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UFMG


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Turkey

ncbi_isolation_source: ground sesame seed paste tahini

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_organism_name: Sideroxydans sp.

ncbi_submitter: Radboud University


ncbi_organism_name: Streptomyces coelicolor

ncbi_submitter: McMaster University


ncbi_isolation_source: cooked dish

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: USA: WA

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Washington


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium UBA2886

ncbi_submitter: University of Queensland


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Victivallaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: WTSI


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: Urinary Tract

ncbi_organism_name: Staphylococcus sp. HMSC14C01

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: uncultured Selenomonas sp.


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Phaeobacter sp.

ncbi_submitter: Stony Brook University


ncbi_organism_name: Desulfobotulus alkaliphilus

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: Faeces


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Sudan

ncbi_isolation_source: Mycetoma Lesion

ncbi_organism_name: Streptomyces somaliensis

ncbi_submitter: Newcastle University


ncbi_isolation_source: wound

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Brigham & Women's Hospital


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: bioreactor

ncbi_organism_name: Rhizobiales bacterium UBA1347


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Collinsella sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: NNPa 2840

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_country: USA: PA

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Bolivia: Sta. Cruz

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Institut de Recherche pour le Developpement


ncbi_assembly_name: freshwater MAG --- Loc090519-1m_bin-0253

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: Slovenia: Piran; Adriatic Sea; Gulf of Piran

ncbi_organism_name: bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Tunisia: Douz-Matmata; Sahara Desert

ncbi_isolate: SDM bin9

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: SDM bin9

ncbi_submitter: Monash University


ncbi_assembly_name: freshwater MAG --- Ki2-D3_bin-0682

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Clostridium sp.


ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Cronobacter sakazakii

ncbi_strain_identifiers: S44 RUTF

ncbi_submitter: University of Dhaka


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Dialister invisus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Vibrio campbellii

ncbi_submitter: ICAR-Central Institute of Brackishwater Aquaculture


ncbi_organism_name: Cronobacter malonaticus


ncbi_organism_name: Cyclobacteriaceae bacterium


ncbi_organism_name: Qipengyuania flava


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of Medicine, Chulalongkorn University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Vicinamibacteria;o__Candidatus Marinacidobacterales;x__unclassified Candidatus Marinacidobacterales;s__Candidatus Marinacidobacterales bacterium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Microbacterium sp. NPDC057442

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Actinomycetota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured bacterium


ncbi_country: USA: GA

ncbi_isolation_source: environmental non-food-contact surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Bacillus cereus group sp. BceL089

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL089


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Plovdiv


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Vienna


ncbi_organism_name: Staphylococcus pseudoxylosus

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: China: Hainan province

ncbi_organism_name: Streptomyces hainanensis

ncbi_submitter: Ondokuz Mayis University


ncbi_organism_name: Solibacillus sp. FSL K6-1554

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Solibacillus;x__unclassified Solibacillus;s__Solibacillus sp. FSL K6-1554


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Acidimicrobiia bacterium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolate: metabat2_6730_HET_VAC_hicanu.280 MAG

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_strain_identifiers: metabat2_6730_HET_VAC_hicanu.280 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: Antarctica: Eastern Antarctica; Mount Seuss

ncbi_isolate: MSU bin16

ncbi_strain_identifiers: MSU bin16

ncbi_submitter: Monash University


ncbi_organism_name: Streptococcus agalactiae ZQ0910

ncbi_submitter: Fisheries College, Guangdong Ocean University


ncbi_country: USA

ncbi_isolation_source: Ohio soil

ncbi_organism_name: Pseudomonas brassicacearum

ncbi_strain_identifiers: Delaware

ncbi_submitter: Ohio State university


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Indonesia: Cenderawasih Bay National Park; Papua

ncbi_isolation_source: marine sponges

ncbi_organism_name: Roseivirga pacifica

ncbi_submitter: Branch for Bioresources of the Fraunhofer IME


ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Micronesia: Yap

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Centers for Disease Control and Prevention - Zoonoses and Select Agent Laboratory


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejianglab


ncbi_country: Chile

ncbi_isolation_source: Powdered infant formula

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_country: USA: Philadelphia

ncbi_isolation_source: Retail fresh thyme

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA192

ncbi_submitter: Broad Institute


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: USA: California; Alameda County

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: California; Humboldt Bay

ncbi_isolation_source: Marine

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Oregon State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: MS

ncbi_isolation_source: Abdominal wound

ncbi_organism_name: Staphylococcus aureus DAR3776


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: New York; Rochester

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Drexel


gtdb_type_species_of_genus: t

ncbi_country: Israel

ncbi_organism_name: Geminicoccus roseus DSM 18922

ncbi_submitter: JGI


ncbi_isolation_source: throat

ncbi_organism_name: Burkholderia sp. AU33803

ncbi_submitter: University of Michigan


ncbi_country: South Korea

ncbi_isolation_source: food

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_organism_name: uncultured Treponema sp.


ncbi_organism_name: Candidatus Thiodiazotropha sp. 4PDIV1

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Candidatus Thiodiazotropha;x__unclassified Candidatus Thiodiazotropha;s__Candidatus Thiodiazotropha sp. 4PDIV1


ncbi_country: Poland: Silesia

ncbi_isolation_source: Waste water from municipal WWTP

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Institute for Ecology of Industrial Areas


ncbi_organism_name: Comamonas sp.

ncbi_submitter: China Agricultural University


ncbi_isolate: metabat2_coassembly_bwa.122 MAG

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_strain_identifiers: metabat2_coassembly_bwa.122 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: China: Yunfu Pyrite Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea: Ulleung-gun

ncbi_isolation_source: soil

ncbi_organism_name: Aquipseudomonas ullengensis

ncbi_submitter: Chungnam National University


ncbi_country: Norway

ncbi_isolation_source: raw chicken

ncbi_organism_name: Pseudomonas sp. MF6787

ncbi_submitter: Nofima


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Coprobacillus sp. AF19-3

ncbi_submitter: BGI


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus


ncbi_country: USA: Chesapeake Bay; Maryland

ncbi_isolation_source: surface seawater

ncbi_organism_name: Shewanella sp. SR43-8

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: Viet Nam: Dak Lak

ncbi_isolation_source: soil near root of coffee

ncbi_organism_name: Streptomyces sp. COG21

ncbi_submitter: institute of biotechnology


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: University of Zurich


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: France

ncbi_organism_name: Aeromonas salmonicida subsp. salmonicida

ncbi_submitter: Universite Laval


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_organism_name: Companilactobacillus allii

ncbi_submitter: World institute of kimchi


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Gaiellaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Paraclostridium sordellii

ncbi_submitter: University of California, Berkeley


ncbi_country: India

ncbi_isolation_source: avian blood (Gallus gallus domesticus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Italy

ncbi_isolation_source: Sausage

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Nanyang Technological University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: Bronchial washing fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yonsei University College of medicine


ncbi_organism_name: Candidatus Onthomorpha sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Onthomorpha;x__unclassified Candidatus Onthomorpha;s__Candidatus Onthomorpha sp.


ncbi_country: South Korea:Sunchang

ncbi_isolation_source: Gochujang

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_country: Norway: Spitsbergen Islands

ncbi_organism_name: Sinomicrobium sp. N-1-3-6

ncbi_submitter: Third Institute of Oceanography, State Oceanic Administration


ncbi_submitter: ANSES


ncbi_country: Belgium: Wallonia

ncbi_submitter: University of Liege


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: India: West Bengal

ncbi_isolation_source: root nodules

ncbi_organism_name: Bradyrhizobium sp. WBAH42

ncbi_submitter: University of calcutta


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Coprococcus eutactus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: cold seep

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Next to G213 National Road; Menglun;Yunnan Province

ncbi_organism_name: Blattabacterium cuenoti

ncbi_strain_identifiers: ALLACbim

ncbi_submitter: Okinawa Institute of Science and Technology


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aarhus University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia coli

ncbi_submitter: BGI-Shenzhen


ncbi_country: Switzerland: Zurich

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: ETH Zurich


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: China: Zhejiang

ncbi_isolation_source: Ventilator condensate

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Huashan Hospital


ncbi_country: USA: PA

ncbi_isolation_source: spleen mouse (Mus musculus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Goldcoast


ncbi_organism_name: Desulfosoma caldarium

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Izemoplasma sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;f__Candidatus Izemoplasmataceae;g__Candidatus Izemoplasma;x__unclassified Candidatus Izemoplasma;s__Candidatus Izemoplasma sp.


ncbi_country: France

ncbi_isolation_source: Cheese

ncbi_organism_name: Psychrobacter aquimaris

ncbi_submitter: INRA


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: JCVI


ncbi_country: China

ncbi_isolation_source: marine sediment

ncbi_organism_name: Hoeflea sp. YIM 152468

ncbi_submitter: Yunnan University


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_assembly_name: Avibacterium paragallinarum 221

ncbi_organism_name: Avibacterium paragallinarum 221

ncbi_submitter: The Institute of Animal Husbandry and Veterinary Medicine of Beijing Academy of Agriculture and Forestry Sciences


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium UBA777

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA777


ncbi_country: Germany: foodproduct with ingredients from different origins

ncbi_isolation_source: food

ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01516

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01516


ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_assembly_level: Chromosome

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Khon Kaen University


ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Japan

ncbi_isolation_source: Blood

ncbi_organism_name: Enterobacter cloacae

ncbi_strain_identifiers: ntmc-TH

ncbi_submitter: Toho University


ncbi_isolation_source: water

ncbi_organism_name: Synechococcus sp. WH 8103

ncbi_submitter: STATION BIOLOGIQUE DE ROSCOFF (CNRS - UPMC) - UMR7144 - MAPP TEAM


ncbi_country: USA:Auburn; Alabama

ncbi_isolation_source: kidney of diseased catfish

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: USDA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: soil

ncbi_organism_name: Massilia sp. WF1

ncbi_submitter: Zhejiang University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Roseburia sp. AF42-8

ncbi_submitter: BGI


ncbi_assembly_name: Limnobacter sp. AM_0630

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Universidade Federal de Sao Carlos - UFSCar


ncbi_organism_name: Azospirillaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: metagenome

ncbi_organism_name: Alloprevotella tannerae


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_organism_name: Acinetobacter guillouiae

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Streptococcus oralis


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Lentilactobacillus buchneri

ncbi_submitter: Kyungpook National University


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Jiangsu

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: Brazil

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: Italy: Florence

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Florence

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Chile: Region de Los Lagos

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Guangdong Academy of Agricultural Sciences


ncbi_organism_name: Priestia sp. FSL P4-0332

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Priestia;x__unclassified Priestia;s__Priestia sp. FSL P4-0332


ncbi_organism_name: Dialister sp. CAG:486

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Heilongjiang

ncbi_isolation_source: lung

ncbi_submitter: Institute of Special Animal and Plant Sciences, The Chinese Academy of Agricultural Sciences,


ncbi_submitter: Makerere University


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: oxycline seawater

ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: rhizosphere soil culture M44

ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Korea Food Research Institute


ncbi_organism_name: bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Leibniz Institute of Photonic Technology (IPHT)


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA66

ncbi_submitter: Broad Institute


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli P0302308.2

ncbi_submitter: IGS


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Lomonosov Moscow State University, Faculty of Biology


ncbi_organism_name: Candidatus Limimorpha sp.

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limimorpha;x__unclassified Candidatus Limimorpha;s__Candidatus Limimorpha sp.


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Embleya scabrispora DSM 41855

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Shanghai

ncbi_isolation_source: lavage fluid

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_country: China: Hong Kong

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: China: Yangzhou City; Jiangsu Province

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Menzies School of Health Research


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: CIISA - Centre of Interdisciplinary Research in Animal Health, Faculty of Veterinary Medicine, Unive


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: IMG-taxon 2596583582 annotated assembly

ncbi_organism_name: Microvirga guangxiensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Micromonospora sp. ATCC 39149


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_country: China: Guangdong


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Comenius University Science Park


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: USA: Michigan

ncbi_isolation_source: respiratory

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_country: Taiwan

ncbi_isolation_source: water

ncbi_organism_name: Sphingobium fluviale

ncbi_submitter: National Kaohsiung University of Science and Technology


ncbi_country: Brazil

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_isolation_source: gut

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: China Agricultural University


ncbi_organism_name: Helicobacter hepaticus ATCC 51449


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Salmonella enterica subsp. enterica


ncbi_organism_name: uncultured Pygmaiobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: caecum

ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolate: metabat2_coassembly_bwa.160 MAG

ncbi_strain_identifiers: metabat2_coassembly_bwa.160 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: not applicabable

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Bacteriology, Nagoya University, Graduated School of Medicine


ncbi_organism_name: Pulveribacter sp.


ncbi_organism_name: Mycolicibacterium sp. 120320

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Waterloo


ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured Azospirillum sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptococcus infantis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Exeter


ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__environmental samples;s__uncultured Candidatus Cloacimonadota bacterium


ncbi_country: Romania: Movile Cave

ncbi_isolation_source: Upper gallery; wall diverticulum

ncbi_submitter: Faculty of Biology and Geology, Babes-Bolyai University of Cluj-Napoca


ncbi_organism_name: Tenacibaculum sp. nBUS_03

ncbi_submitter: University of Washington


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Klebsiella sp. CD33

ncbi_submitter: Central South University


ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: Jiangnan University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Phototrophicaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Coprococcus sp.


ncbi_submitter: Children's Hospital affiliated to Zhejiang University School of Medicine


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Rhizobium mayense

ncbi_submitter: Agricultural College and research Institute, Coimbatore


ncbi_organism_name: Pedobacter suwonensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_submitter: Universidad de Chile


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Gemmiger qucibialis


ncbi_assembly_name: freshwater MAG --- MJ111018A_bin-167

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Aerophobota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aerophobota;s__Candidatus Aerophobota bacterium


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: AAFC


ncbi_isolation_source: ruminant gastrointestinal tract


ncbi_organism_name: Paenibacillus sp. RC21

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Escherichia sp. WS2312

ncbi_submitter: Center for Disease Control and Prevention


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-03023

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Listeria monocytogenes

ncbi_strain_identifiers: BfR L448

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_country: Atlantic Ocean: Bermuda Atlantic Time Series BATS

ncbi_isolation_source: seawater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Exeter


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: Kvitko Lab


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: KY

ncbi_isolation_source: bone marrow (Equus ferus caballus)

ncbi_submitter: FDA/CFSAN


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Carnobacterium sp.

ncbi_submitter: EMG


ncbi_country: Canada: Quebec

ncbi_isolation_source: Slaughterhouse-environment

ncbi_submitter: Tamazight Cherifi's shared submissions


ncbi_organism_name: uncultured Salegentibacter sp.


ncbi_isolation_source: plant (cereals)

ncbi_strain_identifiers: CNCM I-2877

ncbi_submitter: Danone Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus paracasei;sb__Lacticaseibacillus paracasei subsp. paracasei;x__Lacticaseibacillus paracasei subsp. paracasei CNCM I-2877


ncbi_country: USA:Northern California;Coast

ncbi_organism_name: Pseudoalteromonas espejiana DSM 9414

ncbi_submitter: Shandong University


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Liaoning

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Caldilinea sp.

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: China: Anhui

ncbi_isolation_source: meat

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_country: USA

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: Region Zealand


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Marinilabilia sp.

ncbi_submitter: University of Queensland


ncbi_country: Netherlands

ncbi_isolation_source: plant tissue

ncbi_organism_name: Dickeya dianthicola

ncbi_submitter: Sorbonne University


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 108

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 114

ncbi_submitter: University of Calgary


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: gut content

ncbi_organism_name: Escherichia coli

ncbi_submitter: RWTH Aachen University Hospital


ncbi_submitter: University of Science and Technology of China


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Coprococcus catus

ncbi_submitter: BGI


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: UCC isolate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: uncultured Vibrio sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Guangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Jinan university


ncbi_country: China

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Yangzhou University


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: USA: Ohio; Old Woman Creek delta

ncbi_isolation_source: wetland soil

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Azospirillaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled pig faecal samples collected from floor of farm

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: The REHAB Consortium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Kiritimatiellales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Zurich


ncbi_organism_name: Sandarakinorhabdus sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_country: USA: LA

ncbi_isolation_source: wound

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Helicobacter typhlonius


ncbi_isolation_source: Faeces


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp1 AA143

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp1 AA143

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_isolation_source: nasal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Staphylococcus gallinarum

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Blautia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_organism_name: Actinobacteria bacterium ADurb.Bin346

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__unclassified Actinomycetota;s__Actinobacteria bacterium ADurb.Bin346


ncbi_organism_name: Staphylococcus sp. FSL W8-0271

ncbi_submitter: Penn State


ncbi_isolation_source: rumen

ncbi_organism_name: Clostridiales bacterium UBA2867

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;x__unclassified Anaerovoracaceae Incertae Sedis;s__Clostridiales bacterium UBA2867


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Georgia: Tbilisi

ncbi_isolation_source: feces

ncbi_submitter: Eliava IBMV

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Reading


ncbi_isolation_source: environment

ncbi_submitter: SC


ncbi_organism_name: Cohnella lupini

ncbi_strain_identifiers: CECT 8236

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-5891

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: USA: California; Lake County

ncbi_isolation_source: sediments of a seasonal vernal pool

ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: BGI


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Flavobacterium cheonhonense

ncbi_submitter: Inha University


ncbi_country: Paraguay: Villeta

ncbi_isolation_source: Gallus gallus domesticus

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: Australia: Cairns

ncbi_isolation_source: Pooled mosquitoes from single mosquito trap

ncbi_organism_name: Wolbachia endosymbiont of Aedes aegypti

ncbi_submitter: Monash University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Brazil:Sao Paulo; Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: China: Jincheng

ncbi_isolation_source: coal mine water

ncbi_organism_name: Aquibium carbonis

ncbi_submitter: China University of Petroleum (East China)


ncbi_isolation_source: Faeces


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_isolation_source: Stool

ncbi_organism_name: Shigella flexneri

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Chongqing Medical University


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Megasphaera sp. UBA3703

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Atlantic

ncbi_isolation_source: Herd 410

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_strain_identifiers: SNUC 2814

ncbi_submitter: University of Calgary


ncbi_organism_name: Streptomyces sp. NBC_00457

ncbi_submitter: Technical University of Denmark


ncbi_country: Mexico: Cancun

ncbi_isolation_source: gastric juice from a dolphin kept in captivity in a marine aquarium

ncbi_organism_name: Pseudomonas aeruginosa 148

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: USA

ncbi_isolation_source: CF Sputum

ncbi_organism_name: Bordetella genomosp. 11

ncbi_submitter: University of Michigan


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Buchananella felis

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_country: Tanzania: Kigoma

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_organism_name: Sneathiella sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: Florida; Florida Keys

ncbi_organism_name: Micromonospora sp. WMMA1363

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Staphylococcus carnosus

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University People's Hospital


ncbi_country: Finland

ncbi_isolation_source: Blood

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Clostridium perfringens SM101

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_submitter: IMR


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: USA: Lincoln city on Placer county

ncbi_isolation_source: Biological material

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Brazil

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_country: Japan: Tokyo

ncbi_organism_name: Streptomyces griseoruber

ncbi_strain_identifiers: NRRL B-1818

ncbi_submitter: USDA/ARS/NCAUR


ncbi_country: United Kingdom

ncbi_isolation_source: feces


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Polystyrene-feeding group superworm feces

ncbi_organism_name: Brevibacterium sp.

ncbi_submitter: The University of Queensland


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: not available

ncbi_organism_name: Pseudomonas fragi

ncbi_submitter: SC


ncbi_country: Morocco

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: Aestuariivirgaceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Candidatus Thermofontivivens primus

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Thermofontiviventaceae;g__Candidatus Thermofontivivens;s__Candidatus Thermofontivivens primus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Thermofontiviventaceae;g__Candidatus Thermofontivivens;s__Candidatus Thermofontivivens primus


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Flavobacterium sp. B17

ncbi_submitter: Kazusa DNA Research Institute


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0151R

ncbi_submitter: Broad Institute


ncbi_organism_name: Clostridium saccharobutylicum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Lactobacillus jensenii IM18-1

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Malaysia: at Universiti Kebangsaan Malaysia Medical Center

ncbi_isolation_source: tracheal aspirate from an ICU patient

ncbi_organism_name: Staphylococcus aureus PPUKM-261-2009

ncbi_submitter: UKM Medical Centre


ncbi_isolation_source: stool sample from 52 year old healthy male

ncbi_organism_name: Odoribacter sp. N15.MGS-14

ncbi_submitter: The Mayo Clinic


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Halomonas sp.


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Pseudomonas simiae

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: Albert

ncbi_isolation_source: Dinosaur fossil bone

ncbi_organism_name: Streptosporangiales bacterium

ncbi_submitter: Princeton University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Larissa


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Belgium

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_country: Kenya: Laikipia

ncbi_isolation_source: Camel

ncbi_submitter: University of Zurich


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: AOP35_04H_surf _bin _9

ncbi_organism_name: Corynebacterium casei

ncbi_strain_identifiers: AOP35_04H_surf _bin _9

ncbi_submitter: Genoscope


ncbi_country: Madagascar: Toamasina

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Institut Pasteur de Madagascar


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_assembly_name: CIRMBP-1212 assembly

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: INRAE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Monash University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: Surveillance swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Yokenella regensburgei

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Salinibacterium sp. GXW1014

ncbi_submitter: Guangxi Minzu University


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyushu University Graduate school of medical sciences, department of Bacteriology


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: oral swab

ncbi_organism_name: Gemella sp. WT2a

ncbi_submitter: King's College London


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Maribacter sp.


ncbi_organism_name: Balneolales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Nigeria

ncbi_isolation_source: human

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Cardiff University


ncbi_organism_name: Pseudoxanthomonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Canada: Ottawa

ncbi_isolation_source: surface water of an agricultural watershed.

ncbi_organism_name: Campylobacter sp. 2018MI34

ncbi_submitter: Texas Tech University


ncbi_isolation_source: unknown

ncbi_organism_name: Clostridioides difficile


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: uncultured Fretibacterium sp.

ncbi_submitter: EMG


ncbi_country: India: Kolkata

ncbi_isolation_source: blood

ncbi_strain_identifiers: MDCL 3

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_isolation_source: faecal

ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Prevotella sp. UBA2726


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: The University of Hong Kong


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Bacillus sp. YIM B13425

ncbi_submitter: Yunnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. YIM B13425


ncbi_organism_name: Paraburkholderia atlantica

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Oharaeibacter sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: Maricaulis sp. D1M11

ncbi_submitter: Shenzhen Institute of Guangdong Ocean University


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces coelicoflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp. NPDC057280


ncbi_organism_name: Helicobacter himalayensis

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Acinetobacter oleivorans

ncbi_submitter: Shenzhen people's hospital


ncbi_organism_name: Sorangium cellulosum

ncbi_strain_identifiers: So ce10

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Georgia


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: KAUST


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: uncultured Opitutaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sultan Qaboos University


ncbi_isolation_source: human stool

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Gordonia sp. CPCC 205515

ncbi_submitter: Institute of Medicinal Biotechnology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. CPCC 205515


ncbi_organism_name: Morganella morganii

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Birmingham


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Thalassospira sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: USA: KS

ncbi_isolation_source: environment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Nigeria: Southwest

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ladoke Akintola University of Technology Teaching Hospital


ncbi_country: China: Guide

ncbi_isolation_source: adult honey bee worker gut

ncbi_organism_name: Gilliamella sp. B3724

ncbi_submitter: China Agricultural University


ncbi_organism_name: Planifilum fimeticola

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Reichenbachiella sp.


ncbi_organism_name: Pseudomonas alabamensis


ncbi_country: Germany

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Murdoch University


ncbi_assembly_name: freshwater MAG --- LaPlata-1m-b_bin-069

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Nitratireductor sp.


ncbi_country: USA: MD

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: US Food and Drug Administration


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_country: Argentina

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: Estuarine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: tortoise tubercle

ncbi_organism_name: [Mycobacterium] chelonae subsp. chelonae

ncbi_submitter: Uppsala University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Isoptericola sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Faculty of Medicine, Prince of Songkla University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Guangdong

ncbi_isolation_source: stool

ncbi_submitter: China CDC


ncbi_country: Cote d Ivoire

ncbi_isolation_source: cassava fermentation

ncbi_organism_name: Weissella cibaria

ncbi_submitter: Brigham Young University


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: France: Brest

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Antarctica

ncbi_isolation_source: Antarctic soil

ncbi_organism_name: Sphingobium sp. KCTC 72723

ncbi_submitter: Ajou University


ncbi_organism_name: Cyanobacteria bacterium J06638_22

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium J06638_22


ncbi_organism_name: Pseudomonas aeruginosa


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Alistipes ihumii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Yuan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: near Lamington National Park; Queensland

ncbi_isolation_source: termite gut

ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Xanthomonas citri subsp. citri Aw12879

ncbi_submitter: CREC, University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri;x__Xanthomonas citri subsp. citri Aw12879


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Bdellovibrio sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_country: USA: Michigan

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Neisseria sp.


ncbi_organism_name: Fusobacterium animalis

ncbi_submitter: Forsyth Institute


ncbi_organism_name: Tomitella biformata AHU 1821

ncbi_submitter: National Institute of Advanced Industrial Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;x__Corynebacteriales incertae sedis;g__Tomitella;s__Tomitella biformata;x__Tomitella biformata AHU 1821


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_country: Serbia

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of Medicine University of Belgrade


ncbi_isolation_source: feces

ncbi_organism_name: Providencia heimbachae

ncbi_submitter: SC


ncbi_country: USA: Sammy Creek Landing; Sugarloaf Key; FL

ncbi_isolation_source: Gill tissue

ncbi_submitter: Clemson University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__gamma proteobacterium symbiont of Ctena orbiculata


ncbi_organism_name: uncultured Aureibaculum sp.


ncbi_isolation_source: cold seep

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Sutterella sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: environment

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bifidobacteriaceae bacterium MCC01976

ncbi_submitter: Moringa milk industry co., ltd.


ncbi_country: USA: Louisiana

ncbi_isolation_source: sugarcane factory

ncbi_organism_name: Pantoea dispersa

ncbi_submitter: USDA-ARS


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Huashan Hospital


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University


ncbi_country: India

ncbi_isolation_source: wound fluid from a diabetic patient

ncbi_organism_name: Staphylococcus aureus MUF256

ncbi_submitter: School of Life Sciences, Manipal University


ncbi_country: Chile: Chanaral de Aceituno

ncbi_organism_name: Streptomyces sp. CHD11

ncbi_submitter: Universidad Tecnica Federico Santa Maria


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Nanjing University


ncbi_country: USA: MS

ncbi_isolation_source: Urethra

ncbi_organism_name: Staphylococcus aureus DAR3627

ncbi_submitter: Broad Institute


ncbi_country: USA: WA

ncbi_isolation_source: blood from patient with bacteremia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: Japan

ncbi_isolation_source: Uriue

ncbi_submitter: Toho University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Italy

ncbi_isolation_source: oropharyngeal swab

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_country: Singapore

ncbi_isolation_source: wet market

ncbi_submitter: SCELSE, Nanyang Technological University, Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Stanley


ncbi_organism_name: Castellaniella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Winogradskyella sp.

ncbi_submitter: Xiamen University


ncbi_country: Tunisia: Saida

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: uncultured Devosia sp.

ncbi_submitter: EMG


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Dairy fermentation

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: University College Cork


ncbi_country: Brazil: Santos

ncbi_isolation_source: oysters (Crassostrea spp.)

ncbi_submitter: University of Sao Paulo


ncbi_country: Russia: Karachay-Cherkessia

ncbi_isolation_source: aborted fetus

ncbi_organism_name: Brucella abortus

ncbi_submitter: Stavropol Plague Control Research Institute


ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Ecuador: Quito

ncbi_isolation_source: Cervical Abscess

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Nigeria

ncbi_organism_name: Staphylococcus nepalensis

ncbi_submitter: African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University


ncbi_isolation_source: Fecal sample

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: University of Parma


ncbi_country: France

ncbi_organism_name: Coxiella burnetii

ncbi_submitter: IHU mediterranee infection


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Robiginitomaculum sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Australia: Gippsland Lakes

ncbi_isolation_source: freshwater

ncbi_organism_name: Nodularia spumigena CS-588/01

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 2 / B; 5m depth; 0.2 filter

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Faeciplasma sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Faeciplasma;x__unclassified Candidatus Faeciplasma;s__Candidatus Faeciplasma sp.


ncbi_country: Germany

ncbi_isolation_source: UTI

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Tufts University


ncbi_organism_name: Blautia wexlerae AGR2146

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium


ncbi_country: Switzerland

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Agroscope


ncbi_country: Finland: Helsinki

ncbi_organism_name: Staphylococcus simulans

ncbi_submitter: Helsinki University


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: USA:Wyoming; Yellowstone National Park; MixyFritzy hot spring

ncbi_isolation_source: alkaline hot spring microbial mat

ncbi_organism_name: Caldilinea sp.

ncbi_submitter: University of Minnesota


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: USA: Denver; CO

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Colorado


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Listeria monocytogenes HPB2262

ncbi_submitter: Broad Institute


ncbi_country: USA: Hilton; NY

ncbi_isolation_source: Soil

ncbi_organism_name: Staphylococcus xylosus

ncbi_strain_identifiers: RIT 806

ncbi_submitter: Rochester Institute of Technology


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Granulosicoccaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: China

ncbi_isolation_source: fresh water

ncbi_organism_name: Gemmobacter aquaticus

ncbi_submitter: Henan University of Technology


ncbi_strain_identifiers: Loch Maree

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium botulinum;x__Clostridium botulinum A;x__Clostridium botulinum A3 str. Loch Maree


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_country: South Korea

ncbi_isolation_source: pig slaughter line carcass

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_country: USA: MN

ncbi_isolation_source: root

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Stockholm University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Corynebacterium amycolatum

ncbi_submitter: Loyola University Chicago


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Helicobacter pylori 98-10

ncbi_submitter: Vanderbilt University School of Medicine


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Ningbo University


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: Denmark

ncbi_isolation_source: liver

ncbi_organism_name: Escherichia coli

ncbi_submitter: Technical University of Denmark, National Veterinary Institute


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: environmental

ncbi_organism_name: Citrobacter cronae

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Megamonas sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_strain_identifiers: Sil NS 23

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: North Carolina

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: South Korea: Chung-cheong bukdo

ncbi_isolation_source: soil

ncbi_organism_name: Chitinophaga agrisoli

ncbi_submitter: Korea research institute of biotechnology bioscience


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Heteroruminococcus;s__Candidatus Heteroruminococcus faecigallinarum


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: South Korea: Busan

ncbi_isolation_source: cabbage

ncbi_submitter: Pukyong National University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Enterobacter hormaechei

ncbi_strain_identifiers: Marseille

ncbi_submitter: URMITE


ncbi_country: USA:Chicago; Lurie Children s Hospital

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: Italy: Parma

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: University of Parma


ncbi_organism_name: Escherichia coli 907710

ncbi_submitter: Washington University


ncbi_country: China: Zhanjiang

ncbi_isolation_source: anal swab

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Washington Puget Sound

ncbi_isolation_source: gills

ncbi_organism_name: Teredinibacter purpureus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: MD

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Coprococcus comes

ncbi_submitter: BGI


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus WAMC6071

ncbi_submitter: Broad Institute


ncbi_country: USA: Seattle; Washington

ncbi_isolation_source: throat

ncbi_organism_name: Treponema pallidum

ncbi_submitter: University of Washington


ncbi_country: Mauritius

ncbi_isolation_source: herbarium specimen

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: CIRAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_country: USA: International Space Station

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pittsburgh


ncbi_country: USA: NY

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: nasal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Pantoea brenneri

ncbi_submitter: Kazan Federal University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Helicobacter ganmani

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_organism_name: Listeria seeligeri

ncbi_submitter: PulseNet USA


ncbi_country: Lebanon

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Lebanese American University


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Germany

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: CAU Kiel


ncbi_country: China: Guangzhou

ncbi_organism_name: Novosphingobium guangzhouense


ncbi_organism_name: Dokdonia sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_isolation_source: skin lesion swab

ncbi_organism_name: Treponema pallidum subsp. pertenue


ncbi_country: Japan:Miyazaki; Yae river

ncbi_organism_name: Geobacter sulfurreducens

ncbi_submitter: Department of Biochemistry and Applied Biosciences, Faculty of Agriculture, University of Miyazaki


ncbi_country: New Zealand: Hikurangi Margin

ncbi_isolation_source: Glendhu Ridge methane seep

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: GNS Science


ncbi_country: China: Tibet

ncbi_isolation_source: Tibet kefir

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Beijing Technology and Business University


ncbi_country: China

ncbi_isolation_source: Aquatic source

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Jiliang University


ncbi_country: New Zealand

ncbi_submitter: Massey University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Mailhella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Corynebacterium matruchotii

ncbi_submitter: EMG


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Prosthecobacter sp.


ncbi_organism_name: Bryobacterales bacterium


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: Seoul National University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Fifth Affiliated Hospital of Southern Medical University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Ruian People's Hospital


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Glaciecola sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Phascolarctobacterium faecium


ncbi_organism_name: Salmonella sp. SKLX088629

ncbi_submitter: Zhejiang university


ncbi_organism_name: Blautia sp.


ncbi_submitter: University of Antwerp


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Nakamurella sp.

ncbi_submitter: Nanjing University


ncbi_organism_name: Streptomyces sp. NPDC049936

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: Sponge: Agelas oroides

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE