ncbi_country: Spain: Asturias

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Hospital Universitario Central de Asturias


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_country: Antarctica:Weddell Sea

ncbi_genome_representation: full

ncbi_isolation_source: seawater

ncbi_organism_name: Bacillus sp. Pc3

ncbi_submitter: Third Institute of Oceanography, State Oceanic Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. Pc3


gtdb_representative: t

ncbi_assembly_level: Scaffold

ncbi_country: Canada: Near Fort McMurray in northeastern Alberta

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: waste water

ncbi_organism_name: Rickettsiales bacterium UBA6177

ncbi_submitter: University of Queensland


ncbi_assembly_level: Contig

ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- F14_bin-0218

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG566

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pennsylvania; Centralia

ncbi_isolation_source: soil

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Michigan State University


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: freshwater MAG --- KR_bin-2378

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Acutalibacter muris


ncbi_isolation_source: Colon

ncbi_organism_name: Helicobacter hepaticus


ncbi_organism_name: Duncaniella muris


ncbi_country: Belgium: Woluwe river

ncbi_isolation_source: river

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: USDA 72

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: United Arab Emirates

ncbi_organism_name: Legionella sp. PATHC032

ncbi_submitter: Danish Technical University


ncbi_country: USA: Alaska; Fairbanks

ncbi_organism_name: Bacillus sp. TH86

ncbi_submitter: University of Alaska Fairbanks

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. TH86


ncbi_country: Brazil: Petrolina

ncbi_isolation_source: kidney

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: UFTM


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University Huashan Hospital


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-8007

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Blood culture

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: blood

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: University of Houston


ncbi_country: USA: Florida; Cedar Key

ncbi_isolation_source: gill

ncbi_submitter: Clemson University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Candidatus Thiodiazotropha;s__Candidatus Thiodiazotropha sp. (ex. Lucinisca nassula)


ncbi_organism_name: Candidatus Limimorpha sp.

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limimorpha;x__unclassified Candidatus Limimorpha;s__Candidatus Limimorpha sp.


ncbi_country: Antarctica: Mackay Glacier regions; Towle Glacier

ncbi_isolation_source: mineral soil

ncbi_organism_name: Rubrobacter sp.

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: EMG


ncbi_country: China: Shandong

ncbi_submitter: China Agricultural University


ncbi_country: Russia: Caucascus

ncbi_organism_name: Streptomyces glaucescens

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: NRRL B-2706

ncbi_submitter: USDA/ARS/NCAUR

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Mycobacterium tuberculosis str. OSDD515

ncbi_submitter: OSDD Open Access Repository

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis str. OSDD515


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli


ncbi_country: China: Jiangsu


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Roseburia sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine


ncbi_country: Denmark: Kalundborg

ncbi_isolation_source: activated sludge from Kalu_18-Q3-R12-55

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Loma Ridge; California

ncbi_isolation_source: Leaf Litter

ncbi_organism_name: Curtobacterium sp. MMLR14_002

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Thailand: Bangkok; Pomprab market

ncbi_isolation_source: pork

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Chulalongkorn university


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: EPFL


ncbi_country: Svalbard

ncbi_isolation_source: sea water

ncbi_organism_name: Salinibacterium sp. NSLL17

ncbi_submitter: Shandong University


ncbi_organism_name: Curtobacterium sp. PhB142

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10672

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Chryseobacterium sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University


ncbi_assembly_name: freshwater MAG --- Ja1-D4_bin-692

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Prof. Bart Currie, Menzies School of Health Research


ncbi_country: India: Silagrant; Guwahati; Assam

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_isolation_source: human gut

ncbi_organism_name: Sutterellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bordetella holmesii CDC-H643-BH

ncbi_submitter: JCVI


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_organism_name: Burkholderia anthina

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA7151

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Duodenibacillus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Campylobacter concisus


ncbi_country: Netherlands

ncbi_isolation_source: laboratory strain

ncbi_strain_identifiers: ATCC ATCC 43816

ncbi_submitter: FDA


ncbi_submitter: Jiangxi Academy of Agricultural Sciences


ncbi_organism_name: Vibrio sp. Vb0974

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Haemaphysalis qinghaiensis


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: University of South Africa


ncbi_organism_name: 'Camptotheca acuminata' phytoplasma

ncbi_strain_identifiers: CaWB-YNWS

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Ruijin Hospital, Shanghai Jiaotong University School of Medicine


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea

ncbi_isolation_source: soil from tomato rhizosphere

ncbi_organism_name: Flavobacteriaceae bacterium FS1-H7996/R

ncbi_submitter: Dong-A University


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Marinobacter sp. NSM

ncbi_strain_identifiers: NSM

ncbi_submitter: Bellevue University


ncbi_country: France: Fort de France

ncbi_isolation_source: Urine sample

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CHRU Besancon


ncbi_organism_name: Escherichia coli

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: United Kingdom

ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: SC


ncbi_submitter: Shandong Academy of Agricultural Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_assembly_level: Chromosome

ncbi_country: Sudan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Khartoum


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: BGI-Shenzhen


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: USA: Texas

ncbi_organism_name: Microbacterium arborescens

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: University of Agriculture in Krakow


ncbi_country: Pacific Ocean: Munida Microbial Observatory Time Series

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_country: Canada: Montreal; Quebec

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Washington


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: raw cow milk

ncbi_organism_name: Corynebacterium crudilactis

ncbi_submitter: Bielefeld University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Mycoplasmataceae bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: NSU Genome Research Institute (NGRI)


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus cremoris;sb__Lactococcus cremoris subsp. cremoris;x__Lactococcus cremoris subsp. cremoris A76


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Aminobacter sp. Piv2-1

ncbi_submitter: Korea Institute of Geoscience and Mineral Resources


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leeds


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Ohio

ncbi_isolation_source: miscellaneous body fluid

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: CA

ncbi_isolation_source: environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Intra-abdominal infection

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_assembly_name: WGS Staphylococcus aureus JS046

ncbi_country: Jordan: Amman

ncbi_organism_name: Staphylococcus aureus JS046

ncbi_submitter: Lebanese American University


ncbi_organism_name: Xanthomonas sp. WHRI 1810A

ncbi_strain_identifiers: WHRI 1810A

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: uncultured Lactobacillales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Peru

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: Romboutsia ilealis


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: uncultured Caenibius sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: East China Sea

ncbi_organism_name: Marinobacter shengliensis subsp. alexandrii

ncbi_submitter: Zhejiang Ocean University


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Italy: Florence

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Florence


ncbi_country: Spain: Gran Canaria

ncbi_isolation_source: wound

ncbi_organism_name: Shewanella algae

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: bile duct of patients with Primary sclerosing cholangitis (PSC)

ncbi_organism_name: Enterococcus sp. FR112

ncbi_submitter: Helmholtz Centre for Infection Research, HZI


ncbi_assembly_name: freshwater MAG --- LJ-5-9m_bin-0318

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Candidatus Binataceae bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;x__unclassified Candidatus Binataceae;s__Candidatus Binataceae bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Max Planck Institute of Biochemistry


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Megasphaera sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Acinetobacter baumannii


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Streptomyces sp. NPDC056672

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Streptomyces rimosus


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: The University of Queensland


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: cold seep

ncbi_organism_name: candidate division WWE3 bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium


ncbi_organism_name: Pseudomonas sp. NPDC088414


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Streptomyces rubiginosohelvolus


ncbi_organism_name: Gemmatimonadota bacterium


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Equitorial atlantic

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: EMG


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_assembly_name: freshwater MAG --- I-1_bin-249

ncbi_isolation_source: pond

ncbi_organism_name: Oligoflexia bacterium

ncbi_submitter: BILS


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Lentisphaerota bacterium

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerota bacterium


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acidovorax sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Japan:Shiga; Lake Biwa

ncbi_isolation_source: Lake freshwater

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Center for Ecological Research, Kyoto University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Faecalibacterium tardum

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWB1_55_9


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_country: Republic of the Congo: Pointe-Noire

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Food production environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University College Cork


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Saudi Arabia: Jizan

ncbi_isolation_source: roots

ncbi_organism_name: Isoptericola variabilis

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_country: Bangladesh

ncbi_submitter: North South university


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: South Africa: Mafikeng; Mafikeng Provincial Hospital

ncbi_isolation_source: diarrhea sample from child under the age of five

ncbi_organism_name: Shigella flexneri

ncbi_submitter: North-west University


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: France

ncbi_isolation_source: fermented milk

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: CIRM-BIA 1444

ncbi_submitter: Brigham Young University


ncbi_organism_name: Lacticaseibacillus paracasei COM0101

ncbi_submitter: Kyushu University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: whole body

ncbi_organism_name: Buchnera aphidicola (Cinara confinis)

ncbi_submitter: Centre de Biologie pour la Gestion des Populations (CBGP - UMR1062)


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_submitter: New York State Dept. of Health - Wadsworth Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Thompson


ncbi_country: Tanzania

ncbi_isolation_source: Wound

ncbi_submitter: SC


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Soochow University


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: Kiel University


ncbi_country: Spain: Asturias

ncbi_organism_name: Corynebacterium casei

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA2390


ncbi_organism_name: Stenotrophomonas geniculata

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: South Korea: Jeju

ncbi_isolation_source: larvae

ncbi_organism_name: Enterococcus sp. BWT-B8

ncbi_submitter: BioPS Co., Ltd.


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: Denmark

ncbi_organism_name: Arcanobacterium phocae

ncbi_submitter: Helsinki University


ncbi_organism_name: Streptomyces sp. NPDC001250

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Switzerland

ncbi_isolation_source: chicken cecum

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: ETH Zurich


ncbi_country: China: Shandong Province

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China agricultural university


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Herbiconiux moechotypicola

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Holophagales bacterium


ncbi_country: USA: California

ncbi_organism_name: Campylobacter fetus subsp. testudinum

ncbi_submitter: Utrecht University


ncbi_country: USA: Lubbock; TX

ncbi_isolation_source: indwelling urinary catheter

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: National Center for Biotechnology Information


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. 2007005490


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasmatales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Environmental Microbiology OMICS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Streptomyces fragilis


ncbi_submitter: Stockholm University


ncbi_country: China: Qingdao

ncbi_isolation_source: feces

ncbi_organism_name: Proteus faecis

ncbi_submitter: Shandong University


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: EMG


ncbi_country: China: Hohhot

ncbi_isolation_source: dairy products

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: university


ncbi_country: USA: Indiana

ncbi_isolation_source: natural ground soil near campus

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: Indiana University Kokomo


ncbi_country: USA: Washington

ncbi_isolation_source: Toluene-phenol bioreactor

ncbi_organism_name: Rhodococcus zopfii

ncbi_submitter: Newcastle University


ncbi_country: USA: Chapel Hill; North Carolina

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of North Carolina at Chapel Hill


ncbi_organism_name: Castellaniella sp.

ncbi_submitter: University of Waterloo


ncbi_country: Ireland

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_organism_name: Escherichia coli

ncbi_submitter: national health research institutes


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Kuenenia sp.

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;x__unclassified Candidatus Kuenenia;s__Candidatus Kuenenia sp.


ncbi_organism_name: Lachnospira pectinoschiza

ncbi_submitter: SC


ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: China: Hunan; Huangshaping

ncbi_isolation_source: sediment

ncbi_organism_name: Gallionellaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Telmatospirillum sp.

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Chengkuizengella sp. SCS-71B

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_submitter: University of Bern


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: University of California, Los Angeles


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Wilmar International Limited


ncbi_isolation_source: human stool

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Michigan


ncbi_isolation_source: wastewater treatment plant effluent

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_country: Antarctica: Cotton Glacier

ncbi_organism_name: Polaromonas sp. CG_23.6

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: CA

ncbi_isolation_source: ripe fruit

ncbi_organism_name: Enterococcus mundtii 1A

ncbi_submitter: University of California, Davis


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Guangzhou

ncbi_isolation_source: Chancre

ncbi_organism_name: Treponema pallidum subsp. pallidum

ncbi_submitter: Southern Medical University


ncbi_organism_name: Acinetobacter haemolyticus


ncbi_country: Poland

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: avian feces

ncbi_organism_name: Escherichia albertii

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Haemophilus parainfluenzae


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1639 from squamous cell carcinomas patient MST029

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Queensland


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_country: France: Pays de la Loire

ncbi_isolation_source: lung

ncbi_organism_name: Pasteurella multocida subsp. septica

ncbi_submitter: INRA


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Nanjing Agriculture University


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_isolation_source: environment

ncbi_submitter: URMITE


ncbi_country: China: Zhejiang province

ncbi_organism_name: Comamonas resistens

ncbi_submitter: Zhejiang University


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Cytophagaceae bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWD2_38_12


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Limnophora tigrina


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Candidatus Muiribacterium halophilum

ncbi_taxonomy: d__Bacteria;p__Candidatus Muiribacteriota;c__Candidatus Muiribacteriia;o__;f__Candidatus Muiribacteriaceae;g__Candidatus Muiribacterium;s__Candidatus Muiribacterium halophilum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Muiribacteriota;c__Candidatus Muiribacteriia;x__Candidatus Muiribacteriales;f__Candidatus Muiribacteriaceae;g__Candidatus Muiribacterium;s__Candidatus Muiribacterium halophilum


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Germany

ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Munster


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Streptomyces sp. W4I9-2

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Ghana: Accra

ncbi_isolation_source: hospital

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Massey University


ncbi_isolation_source: non

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Beijing Union University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Invasive

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: Forsyth Institute


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IMR


ncbi_organism_name: Salmonella sp. M123

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Caulobacteraceae bacterium UBA6225

ncbi_submitter: University of Queensland


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Banfield Lab, University of California, Berkeley


gtdb_type_species_of_genus: t

ncbi_country: USA: Hawaii

ncbi_isolation_source: goat

ncbi_organism_name: Synergistes jonesii

ncbi_submitter: UC Davis


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Macinerneyibacteriota;c__Candidatus Mcinerneyibacteria;o__Candidatus Mcinerneyibacteriales;x__unclassified Candidatus Mcinerneyibacteriales;s__Candidatus Mcinerneyibacteriales bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces stelliscabiei

ncbi_submitter: Oregon State University


ncbi_country: China: Jiangsu

ncbi_isolation_source: cloaca

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Enterobacter quasiroggenkampii

ncbi_submitter: Universiteit Antwerpen


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jiangxi Agricultural University


ncbi_organism_name: Luteibacter sahnii

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Aristaeellaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Guatemala

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: uncultured Aestuariivirga sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: oral cavity

ncbi_organism_name: Actinomyces weissii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: China: Guangdong

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: uncultured Victivallales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_country: USA

ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 625974

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: SurvCARE


ncbi_organism_name: Clostridium saccharobutylicum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Ardenticatenaceae bacterium


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_organism_name: Parabacteroides goldsteinii


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Belgium: Antwerp

ncbi_isolation_source: Perineum swab

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: Thailand

ncbi_isolation_source: EMS/AHPND-diseased hepatopancreas

ncbi_submitter: National Cheng Kung University


ncbi_organism_name: uncultured Planctomycetales bacterium


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Nimes University Hospital


ncbi_organism_name: Ellagibacter isourolithinifaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China University of technology


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Bifidobacterium pseudocatenulatum


ncbi_organism_name: Streptomyces massasporeus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_country: South Korea

ncbi_isolation_source: Retail raw chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Seoul National University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: California; Lower Lake

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with inulin

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Bohai Sea

ncbi_isolation_source: 24-26 cm sediment from station BHB10 in the Bohai Sea

ncbi_submitter: Shandong University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pedobacter sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Tolumonas osonensis

ncbi_submitter: Xiamen University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Surrey


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_organism_name: Pseudomonas sp. D1-2

ncbi_submitter: KAUST


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Sellimonas intestinalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Brevundimonas vancanneytii

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Rhodobacterales bacterium


ncbi_organism_name: Providencia sp. PROV006

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Aeromonas enteropelogenes

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Streptomyces xanthophaeus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: uncultured Micavibrio sp.


ncbi_organism_name: bacterium


ncbi_organism_name: Isoptericola sp. NPDC058082


ncbi_country: USA: Potomac River; Washington; DC

ncbi_isolation_source: river sediment

ncbi_submitter: Naval Research Laboratory


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_assembly_name: freshwater MAG --- Umea2_bin-1375

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: Holosporales bacterium

ncbi_submitter: University of Queensland


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__environmental samples;s__uncultured Candidatus Izemoplasmatales bacterium


ncbi_organism_name: Treponema sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: Saudi Arabia: KAUST

ncbi_isolation_source: anammox marine column reactor biofilm on non-woven sheet


ncbi_organism_name: Thermodesulfovibrionia bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_isolation_source: feces

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Nannocystaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: EPFL


ncbi_assembly_name: version 1.0

ncbi_isolation_source: ear swab

ncbi_organism_name: Metamycoplasma auris 15026

ncbi_submitter: EVOLMYCO


ncbi_country: South Korea: Iksan

ncbi_isolation_source: clay soil

ncbi_organism_name: Neobacillus sp. OS1-33

ncbi_submitter: Jeonbuk National University


ncbi_country: China: Chengdu

ncbi_isolation_source: Soil for garbage dump

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Sichuan University


ncbi_country: Austria: Vorarlberg

ncbi_organism_name: Escherichia coli

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B325;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: bacterial culture

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center of Infectious and Parasitic Diseases, Sofia Bulgaria


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_submitter: The First Affiliated Hospital, Jiangxi Medical College, Nanchang University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: Rumen uncultured genome RUG13701

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Qinghai

ncbi_isolation_source: soil

ncbi_organism_name: Dyadobacter sp. CY323

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: India: Bhavnagar

ncbi_isolation_source: Water body

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: CSIR-Central Salt and Marine Chemicals Research Institute


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: Egypt: Tanta

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Buchnera aphidicola (Meitanaphis elongallis)

ncbi_submitter: Shanxi University


ncbi_organism_name: Enterobacteriaceae bacterium JKS000233

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Izemoplasma sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;f__Candidatus Izemoplasmataceae;g__Candidatus Izemoplasma;x__unclassified Candidatus Izemoplasma;s__Candidatus Izemoplasma sp.


ncbi_country: Bangladesh

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium lentis

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_country: USA: International Space Station

ncbi_isolation_source: PROTECT experiment; Tray 2; Comp 2; dark layer

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Streptomyces pilosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human gut

ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: Portugal: Porto

ncbi_isolation_source: Intraabdominal infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: whole body of Tylos granuliferus

ncbi_organism_name: Candidatus Tyloplasma litorale

ncbi_submitter: Laboratory of Genome Science Graduate School of Marine Science and Technology, Tokyo University of Marine Science and Technology

ncbi_taxonomy: d__Bacteria;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Candidatus Hepatoplasmataceae;g__Candidatus Tyloplasma;s__Candidatus Tyloplasma litorale


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_country: Austria: Vienna

ncbi_isolation_source: 10 mM sulfoquinovose-amended vegetarian human fecal microcosm

ncbi_organism_name: Duodenibacillus sp.

ncbi_submitter: University of Vienna


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Bioreactor performing anaerobic oxidation of methane coupled to iron reduction

ncbi_organism_name: Bradyrhizobiaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Ileo-caecum


ncbi_country: Democratic Republic of the Congo

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: University of Oxford


ncbi_organism_name: Limnochordales bacterium

ncbi_submitter: Instituto de Quimica


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_country: Australia: Victoria

ncbi_isolation_source: dairy farm

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: CSIRO


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: Infant 1 DOL 25 gut


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Wuhan Polytechnic University


ncbi_country: China: Tengchong National Volcanic Geological Park; Yunnan province; south-west China

ncbi_isolation_source: sandy soil

ncbi_organism_name: Thermoactinospora rubra

ncbi_submitter: Yunnan Institute of Microbiology


ncbi_country: China: Shandong; Zhucheng

ncbi_isolation_source: Animal manure

ncbi_submitter: Shandong university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Spain: Tous; Valencia

ncbi_isolation_source: freshwater reservoir from 13m depth

ncbi_organism_name: Verrucomicrobiia bacterium Tous-C2TDCM

ncbi_submitter: Universidad Miguel Hernandez

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__unclassified Verrucomicrobiia;s__Verrucomicrobiia bacterium Tous-C2TDCM


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Infectious Diseases Area, Respiratory Infection and Antimicrobial Resistance Group, Biogipuzkoa Heal


ncbi_organism_name: Turicibacter sanguinis

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus sp. FSL K6-1005

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL K6-1005


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: CRC AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Siminovitchia fortis

ncbi_submitter: BGI


ncbi_isolation_source: Mariane sediment

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__environmental samples;s__uncultured Patescibacteria group bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Iran: Sanandaj

ncbi_isolation_source: wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Saskatchewan


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_country: USA: DC

ncbi_isolation_source: Stool

ncbi_organism_name: Escherichia coli O157

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: uncultured Escherichia sp.


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: Dactylosporangium sp. NPDC000244

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Alcanivorax sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Escherichia coli M22

ncbi_submitter: Department of Pediatrics, Washington University School of Medicine


ncbi_organism_name: Enterobacter hormaechei


ncbi_country: Belgium: Leuven

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: KU Leuven


ncbi_isolate: Clostridium neonatale C58

ncbi_organism_name: Clostridium neonatale

ncbi_strain_identifiers: Clostridium neonatale C58

ncbi_submitter: universite paris cite


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_submitter: USAMD-AFRIMS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Choleraesuis


ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Streptococcus agalactiae BSU167

ncbi_submitter: The J. Craig Venter Institute


ncbi_isolation_source: grape plant

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: China: Shandong

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Aricultural University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Mucispirillum sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Russia: Moscow

ncbi_isolation_source: stool sample

ncbi_submitter: Pirogov Russian National Research Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium longum;sb__Bifidobacterium longum subsp. infantis;x__Bifidobacterium longum subsp. infantis EK3


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: SC


ncbi_country: Spain

ncbi_isolation_source: milk from a sheep with mastitis

ncbi_organism_name: Burkholderia contaminans LMG 23361

ncbi_submitter: University of Manitoba

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;x__Burkholderia cepacia complex;s__Burkholderia contaminans;x__Burkholderia contaminans LMG 23361


ncbi_organism_name: Phocaeicola vulgatus


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom: Aberdeen

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Leicester


ncbi_country: Canada: Atlantic

ncbi_isolation_source: Herd 415

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 1415

ncbi_submitter: University of Calgary


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Rossellomorea sp. DUT-2

ncbi_submitter: Dalian university of technology


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Serratia nevei

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: TBM 27

ncbi_submitter: VNU-Institute of Microbiology and Biotechnology, Vietnam National University, Hanoi


ncbi_country: USA: MN

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Paludibacteraceae bacterium


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Peptoniphilus vaginalis


ncbi_organism_name: Streptococcus infantarius

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Fujian

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus sp. B1E2

ncbi_submitter: Fujian Agriculture And Forestry University


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: USA

ncbi_isolation_source: wastewater

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Oklahoma State University


ncbi_assembly_name: IMG-taxon 2693429868 annotated assembly

ncbi_organism_name: Roseobacter denitrificans OCh 114

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Salipiger bermudensis

ncbi_submitter: Xiamen University


ncbi_organism_name: Thermosynechococcus sp. WL11

ncbi_submitter: Academia Sinica


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Chryseobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Nanjing University


ncbi_country: Italy: Grotta Nuova del Rio Garrafo cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Melioribacter roseus

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella sp. S142_60093

ncbi_submitter: Zhejiang University


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_country: USA: Yellowstone National Park

ncbi_isolation_source: hotspring

ncbi_organism_name: Alicyclobacillus sendaiensis

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: sputum from cystic fibrosis patients

ncbi_organism_name: Achromobacter ruhlandii

ncbi_submitter: Universidade do Estado do Rio de Janeiro


ncbi_country: China: Guangzhou

ncbi_isolation_source: activated sludge

ncbi_organism_name: Corallococcus sp. AS-1-12

ncbi_submitter: Guangdong Academy of Sciences


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Huangshi

ncbi_isolation_source: high-arsenic soil

ncbi_organism_name: Pseudomonas hunanensis

ncbi_submitter: Hubei Normal University


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_assembly_name: freshwater MAG --- AM-2014-D2_bin-559

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: addis ababa university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Rummeliibacillus sp.


ncbi_organism_name: Streptomyces sp. NPDC059805

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: California; Alameda County

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_assembly_name: Rumen uncultured genome RUG13113

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7043

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut


ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: EBI


ncbi_isolation_source: Medical

ncbi_submitter: Instituto de Investigacion Sanitaria y Biomedica de Alicante


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: Bronchiectasis

ncbi_organism_name: Mycobacterium kansasii

ncbi_submitter: Forschungszentrum Borstel, Germany


ncbi_country: Brazil: Continental slope off northeastern Brazil; 170 km from the coastline and 280 km to the north of the mouth of the Parnaiba River

ncbi_isolation_source: Sediment core

ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: UFRJ


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Laboratory

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: Haiti

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae HC-44C1

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: Aberdeen

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Leicester


ncbi_country: New Zealand

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_strain_identifiers: ICMP 3688

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_organism_name: Isoptericola halotolerans

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Spain: Asturias

ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: vagina

ncbi_organism_name: Tessaracoccus timonensis

ncbi_submitter: URMITE


ncbi_country: Chile: Santiago

ncbi_isolation_source: oral mucosa

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad del desarrollo


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Yersiniaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: North Carolina

ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: Northeastern University


ncbi_country: Viet Nam: Lang Son

ncbi_isolation_source: fermented lap xuong sausage

ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: VNU-Institute of Microbiology and Biotechnology, Vietnam National University, Hanoi


ncbi_organism_name: Nocardia fluminea

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Sideroxydans sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: China: Wuhan

ncbi_isolation_source: sputum

ncbi_submitter: Zhongnan Hospital of Wuhan University


ncbi_country: China

ncbi_isolation_source: secretions

ncbi_organism_name: Escherichia coli

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_organism_name: Enterobacter ludwigii

ncbi_strain_identifiers: EL-TMU

ncbi_submitter: Tianjin Medical University


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_assembly_name: freshwater MAG --- MJ130702B_bin-369

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: USA: Chicago

ncbi_submitter: UTSA


ncbi_country: Denmark

ncbi_isolation_source: feces

ncbi_submitter: Hvidovre Hospital - University of Copenhagen


ncbi_country: Brazil: Belem

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: South Korea

ncbi_isolation_source: water

ncbi_organism_name: Aequorivita soesokkakensis

ncbi_submitter: FACULTY OF BIOSCIENCES AND MEDICAL ENGINEERING, UNIVERSITI TEKNOLOGI MALAYSIA


ncbi_country: China: Zhejiang

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_assembly_name: IMG-taxon 2675903019 annotated assembly

ncbi_organism_name: Delftia tsuruhatensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Brazil

ncbi_isolation_source: caseous lymphedenitis abscess

ncbi_organism_name: Corynebacterium pseudotuberculosis 1002

ncbi_submitter: Minas Gerais Genome Network


ncbi_submitter: University of Zurich


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 3.0 m mixolimnion layer of meromictic lake

ncbi_organism_name: bacterium

ncbi_submitter: Academia Sinica


ncbi_country: United Kingdom: Scotland

ncbi_organism_name: Campylobacter devanensis

ncbi_submitter: University of Aberdeen


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Beijing

ncbi_isolation_source: lab-scale wastewater treatment bioreactor

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Peking University


ncbi_assembly_name: Rumen uncultured genome RUG14844

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Collinsella sp.


ncbi_organism_name: Candidatus Pelagibacter sp. HIMB1587

ncbi_submitter: Hawaii Institute of Marine Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp. HIMB1587


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Streptomyces sp. SAI-229

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Halothiobacillus sp. DCM-1

ncbi_submitter: South China University of Technology


ncbi_organism_name: Streptomyces sp. NPDC057746

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces hydrogenans


ncbi_organism_name: uncultured Comamonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang Cancer Hospital


ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Nitrospiraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Daping Hospital, The Army Medical University


ncbi_organism_name: Streptomyces sp. NPDC056638


ncbi_organism_name: Sanguibacter sp. A246

ncbi_submitter: China CDC


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florida


ncbi_organism_name: Candidatus Methylopumilus planktonicus

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Parerythrobacter sp.


ncbi_organism_name: Serratia nevei

ncbi_submitter: University of Wyoming


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_organism_name: uncultured Pseudomonadota bacterium


ncbi_organism_name: Luteolibacter sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Megamonas funiformis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Collinsella sp.


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Firmicutes bacterium CAG:882

ncbi_submitter: DTU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:882


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Vienna


ncbi_country: China: Shanghai

ncbi_isolation_source: urban industrial factory reactor residue

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Fudan University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital of Antwerp


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Polaromonas sp.

ncbi_submitter: Universite Laval


ncbi_organism_name: Vibrio sp. BS-M-Sm-2

ncbi_submitter: Chung-Ang university


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acidocella sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: A. baumannii

ncbi_submitter: Seoul National University Children's Hospital


ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China: Changde

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Kitasatospora cathayae

ncbi_strain_identifiers: HUAS 3-15

ncbi_submitter: Hunan University of Arts and Science


ncbi_organism_name: Paramuribaculum intestinale


ncbi_isolation_source: Cooling tower water

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_country: China: Jiangsu

ncbi_isolation_source: Genital tract

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou university


ncbi_country: Senegal: Niokolo-Koba National Park

ncbi_organism_name: Citrobacter cronae

ncbi_submitter: IHU Mediterranee Infection


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Leptotrichia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: BIOLACT


ncbi_country: Germany

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 102 (4-6906788)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 102 (4-6906788)


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Candidatus Peregrinibacteria bacterium

ncbi_submitter: University of Gothenburg

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium


ncbi_country: China: Hangzhou

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Zhejiang Gongshang University


ncbi_isolation_source: water

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Shandong First Medical University


ncbi_assembly_name: Assembly of colistin-resistant Enterobacter cloacae strain

ncbi_country: USA

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: JCVI


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Anaerostipes sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: Gennova Biopharmaceuticals Ltd


ncbi_isolation_source: Stool

ncbi_submitter: CDC


ncbi_country: USA: Boston

ncbi_isolation_source: ocular liquid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Massachusetts Eye and Ear Infirmary


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: China: Yueqing

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Michigan

ncbi_organism_name: Citrobacter pasteurii

ncbi_submitter: University of Michigan


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Flea

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: USA: California

ncbi_isolation_source: Advanced Water Purification Facility

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Colorado School of Mines

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_country: Italy: Lecco

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Florence

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: EPFL


ncbi_assembly_name: IMG-taxon 2623620580 annotated assembly

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: University of Chicago


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: stool

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O145:NM;x__Escherichia coli O145:NM str. 2010C-3526


ncbi_country: Austria: Vienna

ncbi_isolation_source: uterus swab of a cow with isolated from the uterus of a cow with endometritis

ncbi_organism_name: Corynebacterium endometrii

ncbi_submitter: Uni Bielefeld


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: Zhejiang University


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 1461963

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: isolated from Haemaphysalis concinna

ncbi_submitter: Department of Bacteriology, Faculty of Medical Scineces, Kyushu University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia conorii;sb__Rickettsia conorii subsp. heilongjiangensis


ncbi_organism_name: Empedobacter sp.


ncbi_country: Ireland: Dublin

ncbi_isolation_source: periorbital

ncbi_submitter: Trinity College Dublin


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: bacterium 1xD42-87

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Pseudomonadaceae bacterium UBA6586


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE12

ncbi_isolation_source: Phytoplankton seston > 100 micron diameter

ncbi_organism_name: Pseudanabaena sp. 42896M_M3

ncbi_submitter: University of Michigan


ncbi_country: Mexico: Jalisco

ncbi_isolation_source: blood

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Universidad de Sonora


ncbi_organism_name: Candidatus Electrothrix sp. GW3-4

ncbi_submitter: University of Antwerp

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfobulbaceae;g__Candidatus Electrothrix;x__unclassified Candidatus Electrothrix;s__Candidatus Electrothrix sp. GW3-4


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Bacteroides nordii

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Ginsengibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: Germany: Kiel

ncbi_isolation_source: food

ncbi_organism_name: Citrobacter sp. C1

ncbi_submitter: Max Rubner-Institut


ncbi_country: USA: WA

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Washington


ncbi_country: Sweden: Vastra Gotaland; Boras

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: TAILORED-Treatment project


ncbi_assembly_name: Rumen uncultured genome RUG14559

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: United Kingdom: England

ncbi_isolation_source: Anal gland

ncbi_submitter: University of Liverpool


ncbi_country: France: Paris

ncbi_isolation_source: pus

ncbi_submitter: INSERM


ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_organism_name: Brevibacterium album DSM 18261

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University