ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Technical University of Denmark


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: CLUE-TERRA


ncbi_assembly_level: Contig

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Oviedo


ncbi_organism_name: Mammaliicoccus fleurettii

ncbi_strain_identifiers: Sil NS 18

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


gtdb_representative: t

ncbi_assembly_level: Complete Genome

ncbi_country: USA

ncbi_isolation_source: spring water (Hunter s hot spring)

ncbi_organism_name: Pleurocapsa sp. PCC 7327

ncbi_submitter: JGI


ncbi_organism_name: Yersinia pestis YN663

ncbi_submitter: Beijing Genomics Institute


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_country: South Africa: Durban

ncbi_submitter: University of KwaZulu Natal

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_country: USA: California; Eel River; South Fork Eel River near Piercy

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: South Africa

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zoonosis Science Center


ncbi_isolation_source: Columbia River plume; salinty 15

ncbi_organism_name: Porticoccaceae bacterium UBA2036

ncbi_submitter: University of Queensland


ncbi_isolation_source: nasal swab

ncbi_organism_name: Corynebacterium propinquum

ncbi_submitter: Baylor College of Medicine


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Streptococcus macedonicus

ncbi_submitter: Oregon State University


ncbi_country: Malaysia: Negeri Sembilan

ncbi_isolation_source: Aquaculture pond water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Monash University


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_country: South Korea

ncbi_isolation_source: food

ncbi_organism_name: Weissella cibaria

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_assembly_level: Chromosome

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: The South China Sea

ncbi_organism_name: Ectopseudomonas oleovorans


ncbi_country: South Korea: Seoul

ncbi_isolation_source: wet soil

ncbi_organism_name: Sphingomonas hankyongi

ncbi_refseq_category: reference genome

ncbi_submitter: Hankyong National University

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: stool

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Acetoanaerobium noterae

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: USA: Washington County; Oregon

ncbi_organism_name: Rathayibacter sp. AY1A1


ncbi_organism_name: Mumia qirimensis

ncbi_submitter: Explogen LLC


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Hattori Laboratory, Department of Center for Omics and Bioinformatics, Graduate School of Frontier Sciences, The University of Tokyo


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_country: USA: Decatur; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Bacillota bacterium HCP3S3_F1_1

ncbi_submitter: Quadram Institute Bioscience

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Bacillota bacterium HCP3S3_F1_1


ncbi_organism_name: Salmonella sp. E393-1

ncbi_submitter: Zhejiang University


ncbi_organism_name: Paraburkholderia tropica

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Desulfobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Methylotenera oryzisoli

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: United Kingdom: Westonbirt

ncbi_isolation_source: lesion

ncbi_organism_name: Scandinavium hiltneri

ncbi_submitter: UWE


ncbi_organism_name: Parabacteroides goldsteinii


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: IL

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Algeria

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: IHU


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a a 3.0 um filter and then through a 0.2 um filter

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: California; Los Angeles County

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: France: Champenoux

ncbi_isolation_source: Decaying oak heartwood

ncbi_organism_name: Acidisoma silvae

ncbi_submitter: University of Occidental Brittany


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: SAR116 cluster bacterium AG-447-A06

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__SAR116 cluster bacterium AG-447-A06


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Bacteroidota Order II. bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy: d__Bacteria;p__Bacteroidota;c__;o__unclassified Bacteroidota Order II.;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;o__unclassified Bacteroidota Order II.;s__Bacteroidota Order II. bacterium


ncbi_country: Japan

ncbi_isolation_source: light organ of apogonidae fish siphamia tubifer

ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG10585

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Serratia marcescens

ncbi_submitter: McMaster University


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: UNIVERSITY COLLEGE DUBLIN


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Germany: Espelkam

ncbi_isolation_source: mineral oil-contaminated soil

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Balearic Islands


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Serratia nevei

ncbi_submitter: University of Georgia


ncbi_organism_name: Halobacteriovoraceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_submitter: California Academy of Sciences


ncbi_organism_name: Flavisolibacter sp.

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Microbacterium sp. E-13

ncbi_submitter: Iowa State University


ncbi_organism_name: Xylella fastidiosa M12

ncbi_submitter: US DOE Joint Genome Institute


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Bdellovibrionaceae bacterium UBA6518

ncbi_submitter: University of Queensland


ncbi_submitter: Nottingham Trent University


ncbi_country: Turkey: Aydin; Salavatli

ncbi_isolation_source: sediment

ncbi_organism_name: Anoxybacillus gonensis

ncbi_submitter: Karadeniz Technical University

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: China: Dali

ncbi_isolation_source: a slice (about 3 cm thickness) from meat surface of Nuodeng ham sampled aseptically

ncbi_organism_name: Kocuria rhizophila

ncbi_submitter: Yunnan Academy of Agricultural Sciences


ncbi_strain_identifiers: NRRL B-2293

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Kitasatosporales;f__Streptomycetaceae;g__Streptomyces;x__Streptomyces griseus group;x__Streptomyces albovinaceus subgroup;s__Streptomyces globisporus;sb__Streptomyces globisporus subsp. globisporus


ncbi_country: Germany

ncbi_isolation_source: water

ncbi_organism_name: Pseudomonas fragi

ncbi_submitter: Technische Universitaet Muenchen


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Thiobacillaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Defense Fuel Supply Center; Hanahan; SC

ncbi_isolation_source: A hydrocarbon-contaminated aquifer

ncbi_organism_name: Geobacter hydrogenophilus

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_country: Sweden: Orebro

ncbi_isolation_source: cornea

ncbi_organism_name: Corynebacterium macginleyi

ncbi_submitter: Aarhus University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Health Research Institutes


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptacidiphilus anmyonensis

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_assembly_name: Rumen uncultured genome RUG10908

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: The East China Sea

ncbi_isolation_source: oxic surface sediment

ncbi_organism_name: Oceanospirillales bacterium

ncbi_submitter: Ocean University of China


ncbi_isolation_source: faeces

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Shanghai MasScience Genomics Core


ncbi_organism_name: Variovorax sp. 3319

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_organism_name: uncultured Thiopseudomonas sp.

ncbi_submitter: Centre for Microbiome Research


gtdb_type_species_of_genus: t

ncbi_strain_identifiers: ATCC 8090

ncbi_submitter: Lawrence Berkeley National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter;x__Citrobacter freundii complex;s__Citrobacter freundii;x__Citrobacter freundii ATCC 8090 = MTCC 1658 = NBRC 12681


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Moraxella lacunata NBRC 102154

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Taiwan

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_organism_name: Sphingomonas kyeonggiensis


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_country: China: Jiangsu

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Yangzhou University


ncbi_country: Ireland

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: India: Pune

ncbi_isolation_source: feces

ncbi_organism_name: Micrococcus sp. HG099

ncbi_submitter: National Centre for cell Science


ncbi_strain_identifiers: NCPPB 2598

ncbi_submitter: University of Exeter

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. theae;x__Pseudomonas syringae pv. theae NCPPB 2598


ncbi_isolate: isolate

ncbi_isolation_source: Urine

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: isolate

ncbi_submitter: Dr. Sarita Mohapatra, Department of Microbiology, All Indian Institute of Medical Sciences


ncbi_country: Australia: Tasmania

ncbi_isolation_source: patient sample

ncbi_submitter: La Trobe University


ncbi_organism_name: Limosilactobacillus pontis

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_organism_name: Rhodoluna sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_isolation_source: rice root

ncbi_organism_name: Burkholderia sp. KJ006

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: human gut


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_submitter: Mahidol University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:-


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Health Research Institutes


ncbi_organism_name: Bacteroides nordii

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: jiangnan


ncbi_country: USA

ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: Poland: Suwalki

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institiute


ncbi_organism_name: Shigella sonnei

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Enterococcus sp. DIV1248a

ncbi_submitter: Broad Institute


ncbi_isolation_source: sea water

ncbi_organism_name: Acinetobacter sp. BEC1-S18-ESBL-01

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: University Hospital of Larissa


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: India: Hyderabad

ncbi_isolation_source: fermented food

ncbi_organism_name: Priestia megaterium

ncbi_submitter: Unique Biotech Limited


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_organism_name: Slackia isoflavoniconvertens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: China: Tataling River

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Rhodocyclaceae bacterium


ncbi_country: Portugal: Ermida

ncbi_isolation_source: soil

ncbi_organism_name: Cupriavidus sp. UME77

ncbi_submitter: University of Minho


ncbi_isolation_source: freshwater creek

ncbi_organism_name: Flavobacterium sp. WLB

ncbi_strain_identifiers: WLB

ncbi_submitter: Lycoming College


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces virginiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: pus

ncbi_organism_name: Burkholderia pseudomallei


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Ohio

ncbi_isolation_source: respiratory

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_country: USA: Kansas

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_organism_name: Sphingomonadales bacterium


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: Caecum


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Candidatus Parvibacillus calidus

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Undibacterium sp. Tian12W

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: uncultured Granulosicoccaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Luteolibacter sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Duncaniella freteri

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: InnoSoilPhos


ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Pirellulaceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Daping Hospital, The Army Medical University


ncbi_organism_name: Paraburkholderia sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Bacteroides ovatus


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: Salmonella sp. NW1244

ncbi_submitter: Sichuan University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: Shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Myxococcota bacterium

ncbi_submitter: Korea Polar Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__environmental samples;s__uncultured Myxococcota bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Desulfovibrio fairfieldensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC057494


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Center for Disease Control and Prevention


ncbi_organism_name: Corynebacterium kefirresidentii

ncbi_submitter: University of York


ncbi_organism_name: Agathobacter rectalis


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus raffinosus

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: EMG


ncbi_country: Brazil: Braganca

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: The Edison Family Center for Genome Sciences and Systems Biology


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Canada: Nunavut

ncbi_isolation_source: high Arctic cold saline sulfur spring anaerobic sediment

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: McGill University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Polyangiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA

ncbi_isolation_source: plant

ncbi_organism_name: Microbacteriaceae bacterium VKM Ac-2854

ncbi_strain_identifiers: VKM Ac-2854

ncbi_submitter: PSCBR RAS G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS


ncbi_country: Germany

ncbi_isolation_source: Tracheal secretions

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SurvCARE


ncbi_submitter: King Abdullah University Science and Technology


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Raoultibacter sp.

ncbi_submitter: China Agricultural University


ncbi_country: USA:Orange County

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Legionellaceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: Academia Sinica


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: BAL

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_submitter: Shandong University of Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Maynooth University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium


ncbi_country: Ireland

ncbi_isolation_source: Bronchoalveolar lavage or sputum

ncbi_organism_name: Mycolicibacterium goodii

ncbi_submitter: St. James's Hospital


ncbi_organism_name: Acinetobacter baumannii 25691_9

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: India: Jetpur; Gujarat

ncbi_isolation_source: Textile industry effluent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Norway: Baerum

ncbi_isolation_source: Wastewater pump station

ncbi_submitter: Karolinska Institutet


ncbi_country: Mexico: CDMX

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: INSTITUTO MEXICANO DEL SEGURO SOCIAL


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: soil

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Afghanistan

ncbi_isolation_source: Tissue

ncbi_submitter: The University of Sydney


ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium GW2011_GWB1_43_19


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_country: Argentina

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Mycobacterium canetti

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Japan

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Murdoch University


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-04811

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Metamycoplasma sp.


ncbi_isolation_source: leaf spot

ncbi_organism_name: Xanthomonas pisi DSM 18956

ncbi_submitter: McMaster University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Megamonas hypermegale

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Segetibacter sp.

ncbi_submitter: EPFL


ncbi_isolation_source: trach aspirate

ncbi_organism_name: Neisseria sp. HMSC056A04

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Escherichia coli

ncbi_submitter: INDICASAT AIP


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: N

ncbi_submitter: SC


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Pseudomonadaceae bacterium UBA2494

ncbi_submitter: University of Queensland


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: United Kingdom:Wales

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Gallibacterium anatis

ncbi_submitter: Clinic for Poultry and Fish Medicine - Vetmeduni Vienna


ncbi_country: USA: OH

ncbi_isolation_source: Ulcer

ncbi_organism_name: Francisella tularensis

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Candidatus Treponema excrementipullorum

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: bacterium D16-50

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas sp. NPDC088322


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Bacillus altitudinis

ncbi_strain_identifiers: Bacillus altitudinis LS1

ncbi_submitter: Zhejiang Normal University


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Microbacterium sp.

ncbi_submitter: EMG


ncbi_country: Portugal

ncbi_isolation_source: expectoration

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Blattabacterium punctulatus

ncbi_strain_identifiers: CPUbt

ncbi_submitter: Okinawa Institute of Science and Technology


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California; Los Angeles County

ncbi_isolation_source: endotracheal aspirate

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Pseudarthrobacter psychrotolerans

ncbi_submitter: Korea university


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: University of Basel


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: kidney

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_organism_name: Xanthomonas vasicola

ncbi_strain_identifiers: IL-1(1) YDC

ncbi_submitter: The Xanthomonas Threats project


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Dubosiella sp.


ncbi_country: China: Qi ao island

ncbi_isolation_source: mangrove soil

ncbi_organism_name: Qipengyuania proteolytica

ncbi_submitter: Guangdong Academy of Sciences


ncbi_organism_name: Caldisericia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces sp. NPDC059752

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Damariscotta River in front of the Bigelow Laboratory for Ocean Sciences

ncbi_isolation_source: four week timepoint of microcosm treated with photo-oxidized crude oil after inoculation with natural surface seawater; biological replicate 2

ncbi_organism_name: Rubripirellula sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Ottowia sp.


ncbi_country: Sweden

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: RIVM


ncbi_organism_name: Enterococcus sp. C81

ncbi_submitter: Northwest A & F University


ncbi_isolation_source: human skin

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: NIH/NHGRI


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: bacterium

ncbi_submitter: Northwestern University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Pakistan

ncbi_isolation_source: dairy Farm

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of microbiology University of Agriculture Faisalabad


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: United Kingdom

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China

ncbi_isolation_source: Mont everest moraine

ncbi_organism_name: Sphingomonas sp. M1-B02

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Northeastern University


ncbi_isolation_source: fermented vinegar broth

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus acetotolerans;x__Lactobacillus acetotolerans DSM 20749 = JCM 3825


ncbi_country: China: Yangzhou

ncbi_isolation_source: stray dog feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Kerstersia gyiorum

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Desulfuromonadales bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_country: China: Beijing

ncbi_isolation_source: vaginal tract

ncbi_organism_name: Lactobacillus crispatus


ncbi_country: Sweden: coastal region near Tjarno

ncbi_isolation_source: Seawater (1m depth)

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: Faeces

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Tuebingen

ncbi_organism_name: Frigoribacterium faeni

ncbi_submitter: University of Tuebingen


ncbi_country: Russia: Moscow

ncbi_isolation_source: feces

ncbi_submitter: RCPCM


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_country: USA: Idaho

ncbi_isolation_source: potato tuber

ncbi_organism_name: Streptomyces caniscabiei

ncbi_submitter: USDA ARS


ncbi_country: China: Guangdong Province

ncbi_isolation_source: forest soil

ncbi_organism_name: Dyella silvae

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Collinsella sp.

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: oral sawb

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_country: China: Fujian

ncbi_isolation_source: 2218E medium

ncbi_organism_name: Photobacterium damselae

ncbi_submitter: Xiamen University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen


ncbi_country: Australia: Melbourne

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Monash University


ncbi_country: China: JiangSu

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Enterobacteriaceae bacterium UBA5791

ncbi_submitter: University of Queensland


ncbi_country: USA: Vidalia Region GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_isolation_source: sediment

ncbi_organism_name: Brevundimonas poindexterae

ncbi_submitter: Peking University Shenzhen Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Intrasporangiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Norway: Tautra underwater ridge at Trondheim Fjord

ncbi_organism_name: Streptomyces sp. ADI95-16

ncbi_submitter: Bielefeld University


ncbi_organism_name: Halomonas sp.

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: China agricultural university


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: China: Guangdong

ncbi_isolation_source: stool

ncbi_submitter: Guangdong CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: China: Zhejiang

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Anaeromassilibacillus sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolate: Fecal samples

ncbi_isolation_source: CEREMI

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_country: Poland

ncbi_isolation_source: Trifolium rubens root nodule

ncbi_organism_name: Pantoea trifolii

ncbi_submitter: Maria Curie Sklodowska University


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 3605

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Bacillus safensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: India

ncbi_organism_name: Mycolicibacterium novocastrense

ncbi_submitter: JCVI


ncbi_country: Portugal: Lisboa

ncbi_isolation_source: Urinary Tract Infection

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Stenotrophomonas sp.


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Solirubrobacterales bacterium


ncbi_organism_name: Candidatus Saccharimonadia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;x__unclassified Candidatus Saccharimonadia;s__Candidatus Saccharimonadia bacterium


ncbi_isolate: sputum

ncbi_submitter: Zhengzhou University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_country: China: Wenzhou

ncbi_submitter: wenzhou medical university


ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Elusimicrobiaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Actinomycetota bacterium


ncbi_country: Canada

ncbi_organism_name: Pseudomonas savastanoi pv. glycinea

ncbi_strain_identifiers: ICMP 4333

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. glycinea


ncbi_country: USA

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_assembly_name: Salmonella enterica CVM 43759 v1.0

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: human gut

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: Hanover; NH

ncbi_isolation_source: conjunctivitis

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Harvard Medical School / Massachusetts Eye and Ear Infirmary


ncbi_organism_name: Clavibacter nebraskensis

ncbi_submitter: University of Minnesota


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. PDM16

ncbi_submitter: University of Chicago


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Malaysia

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: UNIVERSITY PUTRA MALAYSIA


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: clinical

ncbi_submitter: Food and Drug and Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Javiana


ncbi_organism_name: Butyricimonas faecihominis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Tonsillar swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: The University of Queensland


ncbi_organism_name: Chromobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Greece: Epirus

ncbi_isolation_source: artisanal Greek Feta cheese

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: China: Hangzhou

ncbi_isolation_source: body fluid

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: bay water summer N sample 29 PSU in less than .8 micron size fraction

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophica bacterium CG03_land_8_20_14_0_80_43_22


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: respiratory

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Lysobacter enzymogenes

ncbi_submitter: Ocean University of China


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: Leptospiraceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Pseudohongiella sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Serratia quinivorans

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Burkholderia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_organism_name: uncultured Chromatiales bacterium


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Rakuno Gakuen University


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Guangzhou University of Traditional Chinese Medicine


ncbi_organism_name: Candidatus Acutalibacter ornithocaccae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Antwerp


ncbi_organism_name: Litorisediminicola beolgyonensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Phocaeicola plebeius


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Florence


ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 2024EL-00590


ncbi_isolate: AOP32_A1_surf _bin _6

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_strain_identifiers: AOP32_A1_surf _bin _6

ncbi_submitter: Genoscope


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Acinetobacter gandensis

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_country: Czech Republic: Zofinsky prales National Nature Reserve

ncbi_isolation_source: decomposing wood from intermixed hardwood and conifers

ncbi_organism_name: Lactobacillales bacterium

ncbi_submitter: Czech Academy of Science


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Beijing

ncbi_isolation_source: Artificial municipal wastewater treatment

ncbi_organism_name: Anaerolineae bacterium AMX1

ncbi_submitter: Peking University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__unclassified Anaerolineae;s__Anaerolineae bacterium AMX1


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: Universite Laval


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Linnaeus University


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_submitter: The University Hong Kong


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: caecum

ncbi_organism_name: Parasutterella secunda

ncbi_submitter: Veterinary Research Institute


ncbi_country: Ethiopia: Amhara; North Gondar

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: China: Changsha

ncbi_isolation_source: lung

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: CS

ncbi_submitter: Hunan agricultural university


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Opitutales bacterium


ncbi_country: Antarctica: Eastern Antarctica; McMurdo Dry Valleys

ncbi_isolate: MDV bin63

ncbi_isolation_source: soil

ncbi_strain_identifiers: MDV bin63

ncbi_submitter: Monash University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Enterocloster sp. HCN-30185

ncbi_submitter: Seoul National University


ncbi_organism_name: Coprococcus sp.


ncbi_country: Germany

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China

ncbi_isolation_source: environment

ncbi_organism_name: Halocynthiibacter sp. SDUM655004

ncbi_submitter: Shan Dong University


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Seowon university


ncbi_country: Argentina: Tierra Del Fuego National Park

ncbi_organism_name: Bacillus nakamurai

ncbi_submitter: NCAUR-ARS-USDA


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Brazil: Porto Alegre

ncbi_isolation_source: Bladder urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal University of Rio Grande do Sul (UFRGS)


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Center for Microbial Communities


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-4591

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Streptomyces sp. AA4

ncbi_submitter: Broad Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: icddr,b


ncbi_country: USA

ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Blautia wexlerae


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Parolsenella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW305-34

ncbi_submitter: Arkin Lab


ncbi_country: Austria: Pichlinger See

ncbi_isolation_source: freshwater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Streptococcus ruminantium

ncbi_submitter: Bacterial and Parasitic Diseases Research Division, National Institute of Animal Health


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Jiangsu

ncbi_isolation_source: fecal sample

ncbi_submitter: Yangzhou University


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Pseudosulfitobacter pseudonitzschiae

ncbi_submitter: Shantou University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: BGI


ncbi_strain_identifiers: Thompson

ncbi_submitter: National Institute of Food and Drug Safety Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Thompson


ncbi_country: Brazil: Minas Gerais

ncbi_organism_name: Pseudomonas coronafaciens pv. garcae

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. garcae


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_country: Russia: Chuvash Republic

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: State Research Center of Dermatovenerology and Cosmetology


ncbi_organism_name: uncultured Ottowia sp.

ncbi_submitter: EMG


ncbi_isolation_source: Burn

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Australia

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: SC


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Pseudomonas amygdali pv. sesami

ncbi_submitter: North Carolina State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. sesami


ncbi_organism_name: Lachnospiraceae bacterium 10-1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: NY

ncbi_isolation_source: blood

ncbi_organism_name: Paracoccus sanguinis

ncbi_submitter: Wadsworth Center / NYSDOH


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Wenzhouxiangella sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Petrimonas sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Pedobacter heparinus DSM 2366

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter;s__Pedobacter heparinus;x__Pedobacter heparinus DSM 2366


ncbi_country: South Korea

ncbi_organism_name: Escherichia coli

ncbi_submitter: Seoul National University


ncbi_organism_name: Xanthomonas arboricola

ncbi_strain_identifiers: CFBP 6762

ncbi_submitter: INRA


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Saprospiraceae bacterium


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: Bodily fluid

ncbi_submitter: JCVI


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: skin tissue

ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: West China Hospital, Sichuan University


ncbi_assembly_name: IMG-taxon 2582581273 annotated assembly

ncbi_organism_name: Atopostipes suicloacalis DSM 15692

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Australia: Mt Conner; Northern Territory

ncbi_isolation_source: Amblyomma calabyi

ncbi_organism_name: Borrelia sp. P9F1

ncbi_submitter: CSIRO


ncbi_country: South Korea: Gangneung

ncbi_organism_name: Pectobacterium odoriferum

ncbi_submitter: Rural Development Administration


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: Indwelling catheter

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Leyella stercorea

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Norway: Viken

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: USA: Ohio; Old Woman Creek delta

ncbi_isolation_source: wetland soil

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis


ncbi_country: Atlantic Ocean

ncbi_isolation_source: A hexactinellid isolated at 824 m depth

ncbi_organism_name: Chryseoglobus sp. 28M-23

ncbi_submitter: University of Bristol


ncbi_country: Indian Ocean

ncbi_isolation_source: gut content

ncbi_organism_name: Ornithinimicrobium sp. INDO-MA30-4

ncbi_submitter: National Institute of Fisheries Science


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: stool

ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Burkholderia pseudomallei


ncbi_isolation_source: lake water

ncbi_organism_name: Aphanizomenonaceae cyanobacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: Rumen uncultured genome RUG14755

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Staphylococcus aureus VET0312R

ncbi_submitter: Broad Institute


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Syntrophaceticus schinkii

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Thermoanaerobacterales;f__Thermoanaerobacterales Family III. Incertae Sedis;g__Syntrophaceticus;s__Syntrophaceticus schinkii


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Actinomycetospora sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: New Zealand: South Island; Marlborough; Capsize Point

ncbi_isolation_source: marine sponge

ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: VICTORIA UNIVERSITY WELLINGTON


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: Deciduous woodland; University campus

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of East Anglia


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Atopobium sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_country: China: Zhejiang

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: bovine

ncbi_submitter: FDA-CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Uganda


ncbi_isolation_source: Blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SC


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Italy: Policoro

ncbi_isolation_source: whole insect macerate from a Lab maintained population of field collected O. laevigatus

ncbi_organism_name: Leucobacter sp. OLDS2

ncbi_submitter: Swansea University


ncbi_country: USA: Redwood City; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Mesotoga prima

ncbi_submitter: University of California, Berkeley


ncbi_country: United Kingdom

ncbi_isolation_source: Bulk milk

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Balneolales bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Streptomyces qaidamensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada: Alberta

ncbi_isolation_source: Oil sands tailings pond

ncbi_organism_name: Rheinheimera sp. 1928-s

ncbi_submitter: Universite Laval


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: Georgia

ncbi_isolation_source: Matsoni fermented milk product

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: University of Ljubljana


ncbi_assembly_name: IMG-taxon 2600255318 annotated assembly

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Houston Methodist Hospital & Research Institute


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_assembly_name: Rumen uncultured genome RUG12845

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_organism_name: Serratia marcescens

ncbi_submitter: McMaster University


ncbi_country: United Kingdom:Northern Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Candidatus Egerieisoma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;x__Clostridiaceae incertae sedis;g__Candidatus Egerieisoma;x__unclassified Candidatus Egerieisoma;s__Candidatus Egerieisoma sp.


ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile CD49

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Halobacillus trueperi

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Thailand:Phetchaburi Province

ncbi_isolation_source: sediments

ncbi_organism_name: Mycobacterium sp. PO2

ncbi_submitter: Department of Engineering, Graduate School of Integrated Science and Technology, Shizuoka University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR 1137 IAME


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Tannerella forsythia

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus oralis

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Proximal colon


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: yinfei fang


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Kazakhstan: West Kazakhstan; Guryev region

ncbi_organism_name: Yersinia pestis subsp. pestis

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. pestis


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: fermented goat buttermilk

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: university of ljubljana, biotechnical faculty


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Enterococcus dispar

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Shandong

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: China Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG11899

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Stockholm University


ncbi_assembly_name: Rumen uncultured genome RUG14038

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: South Korea: Seongnam-si

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: CICARIA

ncbi_submitter: COSMAX BTI


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: Argentina: Buenos Aires

ncbi_submitter: IMPaM(UBA/CONICET)-Facultad de Medicina UBA


ncbi_organism_name: Mesorhizobium sp. M0227

ncbi_submitter: Washington State University


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_isolation_source: sediment

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: EMG


ncbi_organism_name: Kribbella solani

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Monash University


ncbi_isolation_source: ballast tank

ncbi_submitter: Shandong university


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Chlorobiales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;c__Chlorobiia;o__Chlorobiales;x__environmental samples;s__uncultured Chlorobiales bacterium


ncbi_organism_name: uncultured Dehalococcoidales bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Laboratorio de Resistencia Bacteriana


ncbi_organism_name: Ahniellaceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: Ocean University of China


ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Teagasc


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Antwerp


ncbi_organism_name: Rubrivivax sp.


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Mammaliicoccus vitulinus

ncbi_submitter: KAUST


ncbi_organism_name: Haloferula sp. A504

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Spirochaetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;x__environmental samples;s__uncultured Spirochaetota bacterium


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: CHU Arnaud de Villeneuve Montpellier


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Japan: Chubu

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of East Anglia


ncbi_submitter: CLUE-TERRA


ncbi_country: Canada: Lacombe

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Solimonas sp.

ncbi_submitter: Shandong university


ncbi_organism_name: uncultured Oribacterium sp.


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Vibrio splendidus LRBAC

ncbi_strain_identifiers: LRBAC

ncbi_submitter: IOCAS


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptococcus uberis

ncbi_strain_identifiers: MOL

ncbi_submitter: Rosselkhoznadzor The Russian State Center for Animal Feed and Drug Standardization and Quality


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_assembly_name: Rumen uncultured genome RUG812

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The Second Affiliated Hospital & Yuying Children's Hospital of Wenzhou Medical University


ncbi_organism_name: Paenibacillus sp. FSL R10-2791

ncbi_submitter: Penn State


ncbi_country: Pacific Ocean

ncbi_isolation_source: basaltic crustal fluids

ncbi_submitter: University of Hawaii

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Hydrothermota;x__unclassified Candidatus Hydrothermota;s__Candidatus Hydrothermae bacterium JdFR-71


ncbi_country: Hong Kong

ncbi_isolation_source: Shatin WWTPs_95 WWTPs influent

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Nodularia spumigena UHCC 0143

ncbi_strain_identifiers: UHCC 0143

ncbi_submitter: Universidade de Sao Paulo, Sao Paulo, Brazil

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nodulariaceae;g__Nodularia;s__Nodularia spumigena;x__Nodularia spumigena UHCC 0143


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert sheltered soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pantoea sp. 9140

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Zhejiang province

ncbi_isolation_source: mud from sediment environment of marine cage culture

ncbi_organism_name: Vreelandella alkaliphila

ncbi_submitter: Yellow sea fisheries research institute, CAFS


ncbi_country: China

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong University


ncbi_country: India: Punjab; Uttar Pradesh

ncbi_isolation_source: nodule

ncbi_organism_name: Bradyrhizobium sp. NBAIM14

ncbi_submitter: university of Oxford


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_strain_identifiers: CVUAS 11324

ncbi_submitter: Federal Institute for Risk Assessment


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0073

ncbi_submitter: Broad Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: patient with infection

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Ilumatobacteraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Candidatus Chromulinivoraceae bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__;c__Candidatus Babeliae;o__Candidatus Babeliales;f__Candidatus Chromulinivoraceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;f__Candidatus Chromulinivoraceae;x__unclassified Candidatus Chromulinivoraceae;s__Candidatus Chromulinivoraceae bacterium


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Bordetella parapertussis


ncbi_country: Taiwan: Kueishan Island

ncbi_isolation_source: shallow-sea hydrothermal system

ncbi_organism_name: Marivivens sp. JLT3646

ncbi_submitter: Xiamen University


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Arthrobacter sp. ISL-65

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_country: Nigeria: IITA Ibadan; Oyo state

ncbi_isolation_source: leaves from field plants

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: University of California Berkeley


ncbi_country: Thailand: Phitsanulok

ncbi_organism_name: Escherichia coli

ncbi_submitter: Cardiff University


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: Lactobacillus johnsonii


ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Zurich


ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus M0332


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Segatella salivae

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_country: United Kingdom

ncbi_isolation_source: stool

ncbi_organism_name: Candidatus Cibiobacter qucibialis

ncbi_submitter: University of Trento

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Cibiobacter;s__Candidatus Cibiobacter qucibialis


ncbi_country: Mozambique: Manhica

ncbi_isolation_source: feces

ncbi_submitter: University of Maryland School of Medicine


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis


ncbi_country: Sri Lanka: Colombo

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mountpleasant


ncbi_country: Austria

ncbi_isolation_source: serosa

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Luteimonas sp.


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: HOE Legacy IIB net trap

ncbi_organism_name: Fuerstiella sp.

ncbi_submitter: SCOPE


ncbi_country: Antarctica: Hannah point; Livingston Island ASPA 126

ncbi_organism_name: Microbacterium sp. Se5.02b

ncbi_submitter: Network for Extreme Environment Research


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_assembly_name: freshwater MAG --- KTt_bin-1283

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: South Korea: Seoul

ncbi_organism_name: Streptococcus canis

ncbi_submitter: Hallym University College of Medicine, Kangdong Sacred Heart Hospital


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: CLUE-TERRA