ncbi_country: United Kingdom

ncbi_isolation_source: Liver; lungs & spleen

ncbi_organism_name: Paraclostridium sordellii

ncbi_submitter: SC


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Russia: Kulunda Steppe

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


gtdb_representative: f

ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_assembly_level: Scaffold

ncbi_country: Austria

ncbi_isolation_source: cutter waggon

ncbi_organism_name: Pseudomonas bubulae

ncbi_submitter: FFoQSI GmbH


ncbi_country: Australia: Queensland

ncbi_isolation_source: cloaca

ncbi_organism_name: Chlamydia psittaci

ncbi_submitter: University of the Sunshine Coast


ncbi_country: USA: western arm Lake Superior

ncbi_isolation_source: freshwater cyanobacterial bloom

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Minnesota Duluth


ncbi_isolation_source: metagenome

ncbi_organism_name: Desulfuromonas thiophila

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp. AM16-34

ncbi_submitter: BGI


ncbi_country: Argentina

ncbi_isolation_source: soil

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Germany

ncbi_isolation_source: rectal swab

ncbi_submitter: University Medical Center Groningen


ncbi_assembly_name: freshwater MAG --- MJ130702A_bin-150

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Science and Technology of China


ncbi_country: Brazil: Parana;Campo Magro

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_assembly_name: freshwater MAG --- Loc080925-7m_bin-0210

ncbi_organism_name: Candidatus Tayloriibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tayloriibacteriota;x__unclassified Candidatus Tayloriibacteriota;s__Candidatus Tayloriibacteriota bacterium


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Alberta


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


gtdb_type_species_of_genus: t

ncbi_organism_name: Caecibacteroides pullorum

ncbi_submitter: Veterinary Research Institute

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Evtepia gabavorous

ncbi_submitter: Washington University in Saint Louis


ncbi_country: China: Yunnan

ncbi_isolation_source: vegetable

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Kunming University of Science and Technology


ncbi_organism_name: Candidatus Regnicoccus frigidus MAG-AL2

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Synechococcales;f__Synechococcaceae;g__Candidatus Regnicoccus;s__Candidatus Regnicoccus frigidus;x__Candidatus Regnicoccus frigidus MAG-AL2


ncbi_country: Germany: Trier

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center for Biotechnology


ncbi_organism_name: Dubosiella newyorkensis


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_refseq_category: reference genome

ncbi_submitter: RWTH Aachen University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus;s__Peptoniphilus hominis (ex Hitch et al. 2025)


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1350

ncbi_submitter: Broad Institute


ncbi_isolate: S32 bin 15

ncbi_organism_name: Nostoc sp.

ncbi_strain_identifiers: S32 bin 15

ncbi_submitter: Duke University


ncbi_country: Rwanda: Rusizi

ncbi_submitter: University of Rwanda

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Greater Higgnan Mountains

ncbi_isolation_source: Buteha crater lake

ncbi_organism_name: Undibacterium crateris

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Smithellaceae bacterium


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_isolation_source: Laboratory

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UNIVERSITY OF BIRMINGHAM


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidade Federal do Rio Grande do Norte


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_country: Egypt: Mansoura

ncbi_isolation_source: Urinary catheter

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Nottingham Trent University


ncbi_isolate: Fecal samples

ncbi_isolation_source: LBC

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Faecalicatena orotica

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Thailand: Uttaradit

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Kasetsart University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang university


ncbi_organism_name: Chromobacterium violaceum ATCC 12472

ncbi_submitter: LNCC, Brazil


ncbi_organism_name: Persephonella sp. KM09-Lau-8

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: USA: MN

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_country: South Korea

ncbi_isolation_source: fermented food (Meju)

ncbi_organism_name: Enterococcus raffinosus

ncbi_submitter: Chung-Ang University


ncbi_country: Poland

ncbi_organism_name: Staphylococcus aureus subsp. aureus MR1

ncbi_submitter: University of Edinburgh

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus MR1


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coriobacteriales bacterium


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: marine sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Shanghai Ocean university


ncbi_organism_name: bacterium


ncbi_country: USA:Wyoming; Yellowstone National Park; Rabbit Creek OF1 hot spring

ncbi_isolation_source: alkaline hot spring microbial mat

ncbi_submitter: University of Minnesota


ncbi_organism_name: Pilosibacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: National Institute for Public Health and the Environment


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: University of Bern


ncbi_organism_name: Salmonella sp. SKLX113839


ncbi_organism_name: Alloprevotella sp.


ncbi_organism_name: Bacteroides fragilis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: Seoul National University


ncbi_organism_name: Corynebacterium nuruki

ncbi_submitter: Hospital Universitario Puerta del Mar


ncbi_organism_name: Ruthenibacterium lactatiformans


ncbi_organism_name: Lachnospira sp.


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_organism_name: uncultured Methylocapsa sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University hospital Lubeck


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasmatales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Aquimarina sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: sheep gut metagenome


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: Thailand

ncbi_isolation_source: Canal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: North-West University


ncbi_submitter: Xiamen University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: concordia university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EBI


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_assembly_name: freshwater MAG --- I3b_bin-177

ncbi_isolation_source: pond

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: kimchi

ncbi_organism_name: Leuconostoc citreum

ncbi_submitter: World Institute of Kimchi


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: cattle

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Texas at San Antonio


ncbi_organism_name: Ktedonobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured Ignavibacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Schaalia cardiffensis

ncbi_submitter: EMG


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: University of Washington


ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: University of Wisconsin Madiso


ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Streptomyces sp. PA03-1a

ncbi_submitter: Oregon State University


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: China: Suzhou

ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: Porphyromonadaceae bacterium UBA7043

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Collinsella sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Retail raw chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Seoul National University


ncbi_country: USA: coastal Georgia; Sapelo Island

ncbi_isolation_source: Coastal seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Sapelo Island Microbial Carbon Observatory


ncbi_isolation_source: rhizosphere soil culture M56

ncbi_organism_name: Arthrobacter sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: bacterium

ncbi_submitter: Linnaeus University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Xylanibacter rodentium


ncbi_country: Canada: Toronto

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mesorhizobium australicum

ncbi_submitter: Washington State University


ncbi_country: China: Gungdong

ncbi_isolation_source: venous duct

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: feces

ncbi_submitter: ISTITUTO SUPERIORE DI SANITA


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Cornell University


ncbi_country: Germany

ncbi_isolation_source: Lollo Rosso

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: India: Delhi

ncbi_isolation_source: curd

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: International Centre for Genetic Engineering and Biotechnology


ncbi_country: USA:Texas; Upper Laguna Madre

ncbi_isolation_source: PHA nurdle at the sediment-water interface

ncbi_organism_name: Exiguobacterium sp. SRB7LM

ncbi_submitter: Texas A&M - Corpus Christi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. SRB7LM


ncbi_organism_name: Microbacterium sp. C448

ncbi_submitter: Institut National de la Recherche Agronomique


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Australia

ncbi_submitter: The ithree institute


ncbi_country: Saudi Arabia: Abo Shoosha reef

ncbi_isolation_source: Porites lutea and Goniastrea edwardsi coral colonies

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: University of Konstanz


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: Senegal

ncbi_isolation_source: breast milk

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IHU Genomes


ncbi_country: Canada: Montreal

ncbi_isolation_source: Hospital sink

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Friedrich-Loeffler-Institut

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: China

ncbi_isolation_source: marine sediment

ncbi_organism_name: Winogradskyella alexanderae

ncbi_submitter: ShanDongUniversity


ncbi_isolation_source: Wintergreen Lake

ncbi_organism_name: Flavobacterium sp. WG21

ncbi_submitter: University of Notre Dame


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Dongduk Women's University


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: California

ncbi_isolation_source: crown gall

ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: USDA-ARS


ncbi_country: China: Guangdong

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter roggenkampii MGH 34

ncbi_strain_identifiers: MGH 34

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter roggenkampii;x__Enterobacter roggenkampii MGH 34


ncbi_country: South Africa: Durban

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University of KwaZulu Natal


ncbi_country: Argentina

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_country: USA: Ridgeland; MS

ncbi_isolation_source: enrichment culture of hot tap water

ncbi_organism_name: Thermus scotoductus

ncbi_submitter: Penn State University


ncbi_country: France

ncbi_isolation_source: water

ncbi_organism_name: Leptospira biflexa

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_country: Russia: Moscow

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Haiti

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae HC-61A2

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolate: SPRUCE 296

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 296

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Spain: Lake La Cruz

ncbi_isolation_source: freshwater

ncbi_organism_name: Synechococcus sp. Cruz-7B9

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Dysosmobacter sp.


ncbi_organism_name: Listeria swaminathanii

ncbi_submitter: University of Tennessee


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert bare soil

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wolfeibacteriota;s__Candidatus Wolfebacteria bacterium RIFCSPLOWO2_01_FULL_38_11


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: USA: California; Los Angeles County

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: silage

ncbi_organism_name: Lentilactobacillus buchneri subsp. silagei

ncbi_submitter: Central Region Agricultural Research Center, National Agriculture and Food Research Organization


ncbi_assembly_level: Chromosome

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: hospital sample

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_isolation_source: Fermented raw meat

ncbi_organism_name: Companilactobacillus insicii

ncbi_submitter: Northeast Agricultural University


ncbi_country: Australia: Adelaide

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia lata

ncbi_submitter: SAHMRI


ncbi_organism_name: uncultured Candidatus Pelagibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__environmental samples;s__uncultured Candidatus Pelagibacter sp.


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_organism_name: Candidatus Enterosoma sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;g__Candidatus Enterosoma;x__unclassified Candidatus Enterosoma;s__Candidatus Enterosoma sp.


ncbi_country: Mexico: Guadalajara

ncbi_isolation_source: Intra-abdominal secretions

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_country: Nigeria

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Igbinedion University Okada


ncbi_country: Pacific Ocean: Near Hawaii

ncbi_submitter: Northern Arizona University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Ruthenibacterium sp.

ncbi_submitter: China Agricultural University


ncbi_country: USA: Ohio; Lake Erie; Sandusky Bay

ncbi_isolation_source: Freshwater

ncbi_organism_name: Planktothrix agardhii 1029

ncbi_submitter: Bowling Green State University


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Rhodospirillales bacterium


ncbi_country: USA: WA

ncbi_organism_name: Pseudomonas denitrificans (nom. rej.)

ncbi_submitter: University of Washington


ncbi_country: Brazil

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces nojiriensis

ncbi_submitter: Korea Institute of Science and Technology


ncbi_country: New Zealand: Te Puke

ncbi_organism_name: Pseudomonas marginalis pv. marginalis

ncbi_strain_identifiers: ICMP 9503

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas fluorescens group;s__Pseudomonas marginalis;x__Pseudomonas marginalis pv. marginalis


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Australia

ncbi_isolation_source: cecum

ncbi_organism_name: Helicobacter muridarum

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus delphini

ncbi_submitter: Utrecht University


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: CHU de Bicetre


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_isolation_source: skin

ncbi_organism_name: [Erwinia] mediterraneensis

ncbi_submitter: URMITE


ncbi_country: USA: Detroit; Michigan; urban community garden

ncbi_isolation_source: vegetable

ncbi_organism_name: Stenotrophomonas sp. OVS01A

ncbi_submitter: Wayne State University


ncbi_organism_name: Prevotellamassilia timonensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Ruminococcaceae bacterium UBA1236

ncbi_submitter: University of Queensland


ncbi_isolation_source: dairy product

ncbi_submitter: Anses


ncbi_organism_name: Clostridium sp. AF29-8BH

ncbi_submitter: BGI


ncbi_country: Japan

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Yonsei University


ncbi_isolate: Clinical

ncbi_isolation_source: Cough swab

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Clinical

ncbi_submitter: newcastle university


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Holdemanella biformis

ncbi_submitter: EMG


ncbi_country: Italy

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_submitter: Nanjing Agriculture University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Xenorhabdus;s__Xenorhabdus bovienii;x__Xenorhabdus bovienii str. feltiae Florida


ncbi_country: China: Shanghai

ncbi_isolation_source: clinic

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Shanghai Municipal ceter for disease control & prevention


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. B2-5-9

ncbi_submitter: Curtin University


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Bryobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Spain

ncbi_isolation_source: water

ncbi_organism_name: Lactococcus petauri

ncbi_strain_identifiers: E3 CNA-1

ncbi_submitter: UCM


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal Fluminense


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 383

ncbi_submitter: SC


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 25561_7

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Victivallaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: Lomas Bayas Desert Soil Beside Boulder

ncbi_organism_name: Rubrobacter sp.

ncbi_submitter: University of Duisburg-Essen


ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodobacteraceae bacterium


ncbi_assembly_name: freshwater MAG --- LJ-3-4m_bin-0788

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_submitter: AIIMS, New Delhi


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert sheltered soil

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_country: France: Marseille

ncbi_isolation_source: puncture liquid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: China: Hangzhou

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: Spain: Asturias

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Universita' degli Studi di Milano


ncbi_country: Haiti: Lassalle

ncbi_isolation_source: Water; Environmental

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Florida


ncbi_isolation_source: Beef carpaccio

ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: INRA


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: SC


ncbi_organism_name: Pectobacterium carotovorum

ncbi_submitter: Cornell University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_country: China: Beijing

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: BGI


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Jatrophihabitantaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_submitter: Chinese People's Liberation Army General Hospital


ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_strain_identifiers: BINF

ncbi_submitter: Pendulum Therapeutics


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: sepsis

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_country: India: Mulshi; Maharashtra

ncbi_isolation_source: root nodules

ncbi_organism_name: Cupriavidus sp. WGtm5

ncbi_submitter: C U SHAH UNIVERSITY


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: freshwater MAG --- LJ-3-4m_bin-1072

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_assembly_name: freshwater MAG --- Loc090907-5m_bin-782

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_submitter: University of Surrey


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Fifth Affiliated Hospital of Southern Medical University


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Kyoto University


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Negativibacillus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota sensu stricto incertae sedis;g__Negativibacillus;x__unclassified Negativibacillus;s__Negativibacillus sp.


ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University Hospital Puerta del Mar


ncbi_organism_name: Stenotrophomonas muris

ncbi_submitter: Institute of Agrophysics, Polish Academy of Sciences


ncbi_organism_name: Roseimarinus sediminis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Croceivirga sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_organism_name: Bryobacterales bacterium


ncbi_organism_name: Terriglobia bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rock nearby Barbacenia macrantha specimens

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: natto

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Indian Biological Data Centre


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital affiliated to Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: Enterococcus avium

ncbi_submitter: University of Parma


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Brazil

ncbi_isolation_source: bulk soil from sugarcane field

ncbi_organism_name: Pseudomonas sp. B14(2017)

ncbi_submitter: University of Sao Paulo


ncbi_country: USA: Annandale-on-Hudson; NY

ncbi_isolation_source: grass soil

ncbi_organism_name: Bacillus sp. RM2(2019)

ncbi_submitter: Bard College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. RM2(2019)


ncbi_country: USA: San Francisco

ncbi_isolation_source: fetal intestine

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: UCSF


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Micromonospora sp. CPCC 205558

ncbi_submitter: Institute of Medicinal Biotechnology Chinese Academy of Medical Sciences


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Minnesota

ncbi_isolation_source: ileum

ncbi_organism_name: Lactobacillus sp. UMNPBX15

ncbi_submitter: University of Minnesota


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oslo


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_organism_name: Pseudolactococcus piscium

ncbi_submitter: FFoQSI GmbH


ncbi_assembly_name: Rumen uncultured genome RUG14489

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: China

ncbi_isolation_source: milk;soil

ncbi_organism_name: Bacillus licheniformis

ncbi_strain_identifiers: ATCC 9789

ncbi_submitter: SCUT


ncbi_assembly_name: IMG-taxon 2642422517 annotated assembly

ncbi_organism_name: Amycolatopsis australiensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Proteiniphilum acetatigenes DSM 18083

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Proteiniphilum;s__Proteiniphilum acetatigenes;x__Proteiniphilum acetatigenes DSM 18083


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: USA: CT

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: UNIMI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae;x__Klebsiella pneumoniae subsp. pneumoniae ST258;x__Klebsiella pneumoniae subsp. pneumoniae ST258-K26BO


ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Australia: Sydney; NSW

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Kingston Bay; MA

ncbi_isolation_source: gill tissue

ncbi_organism_name: Solemya velum gill symbiont

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;s__Solemya velum gill symbiont


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo AC


ncbi_organism_name: Limoniibacter sp.

ncbi_submitter: EPFL


ncbi_country: USA

ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA:San Diego

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: China: shandong

ncbi_isolation_source: oil from Sheng Li Oil Field

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Nanjing Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Citrobacter sp. FDAARGOS_156

ncbi_submitter: University of Pittsburgh


ncbi_country: China: Jinan

ncbi_isolation_source: Bumble bee gut

ncbi_organism_name: Gilliamella sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Komagataeibacter xylinus E25

ncbi_submitter: Genomed SA


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: salt crust

ncbi_organism_name: Cyanobacteria bacterium QH_8_48_120

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium QH_8_48_120


ncbi_organism_name: Shigella sp. FJ200903

ncbi_submitter: Fujian Medical University


ncbi_organism_name: Shewanella algae

ncbi_submitter: Sanya Peoples Hospital


ncbi_country: Denmark

ncbi_isolation_source: chicken offal or meat

ncbi_organism_name: Campylobacter coli BIGS0010

ncbi_submitter: Swansea University


ncbi_organism_name: Xylanibacter caecicola

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: stool

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Zhejiang

ncbi_isolation_source: retail chicken

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_submitter: Jeonbuk National University


ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Afifella pfennigii DSM 17143

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Pelethosoma merdigallinarum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Mycoplasmatota;c__;o__;f__;g__Candidatus Pelethosoma;s__Candidatus Pelethosoma merdigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__Mycoplasmatota incertae sedis;g__Candidatus Pelethosoma;s__Candidatus Pelethosoma merdigallinarum


ncbi_isolation_source: freshwater

ncbi_organism_name: Prochlorococcus marinus

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: Brazil:Sao Paulo; Sao Paulo

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: caecum

ncbi_organism_name: Flavonifractor sp. An52

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Poland: Koszalin

ncbi_organism_name: Streptococcus sp. 3764

ncbi_submitter: National Medicines Institute


ncbi_country: USA: western arm Lake Superior

ncbi_isolation_source: freshwater cyanobacterial bloom

ncbi_organism_name: Nocardioides sp.

ncbi_submitter: University of Minnesota Duluth


ncbi_organism_name: Mycolicibacterium sp. PDY-3

ncbi_submitter: Korea University


ncbi_country: South Korea

ncbi_isolation_source: clinical isolates from a Korean pulmonary patient; male; 64 age; Asan medical center

ncbi_organism_name: Mycobacterium paraintracellulare

ncbi_submitter: Department of Microbiology and Immunology, Seoul National University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;s__Candidatus Gottesmanbacteria bacterium RIFCSPLOWO2_01_FULL_43_11b


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada: Quebec; Montreal

ncbi_isolation_source: male patient with severe CDAD

ncbi_organism_name: Clostridioides difficile QCD-23m63

ncbi_submitter: McGill University


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Limnoraphis robusta Tam1

ncbi_submitter: Universidade de Sao Paulo, Sao Paulo, Brazil


ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Malaysia: Pantai Sekinchan; Selangor

ncbi_isolation_source: Ex-situ cultivation technique from seawater and sediment

ncbi_organism_name: Celeribacter sp. PS-C1

ncbi_submitter: Malaysia Genome Institute, National Institutes of Biotechnology Malaysia


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Peru

ncbi_isolation_source: feces

ncbi_organism_name: Shigella flexneri

ncbi_strain_identifiers: DMB SH20170

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Clostridioides difficile


ncbi_country: Italy

ncbi_isolation_source: Haematology Unit

ncbi_organism_name: Paenibacillus alvei

ncbi_submitter: Ospedale San Bortolo AULSS8 BERICA


ncbi_organism_name: Fusobacterium mortiferum ATCC 9817

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Waterburya sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudomonas syringae pv. tagetis

ncbi_strain_identifiers: ICMP 4092

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 7;x__Pseudomonas syringae pv. tagetis


ncbi_country: Germany

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia thracica

ncbi_submitter: SC


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Agroscope


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 6-319-05_S3_C1

ncbi_submitter: IGS


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_assembly_name: Rumen uncultured genome RUG13084

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_assembly_name: Streptomyces sp. F7

ncbi_isolate: Streptomyces sp. F7

ncbi_organism_name: Streptomyces sp. F-7

ncbi_strain_identifiers: Streptomyces sp. F7

ncbi_submitter: LABORATORIO NACIONAL DE CIENCIA E TECNOLOGIA DO BI


ncbi_country: Oman

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Ministry of Health


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: India: Jeedimetla;Hyderabad

ncbi_isolation_source: probiotic water sample

ncbi_organism_name: Salinicoccus halitifaciens

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: India

ncbi_organism_name: Mycobacterium colombiense

ncbi_submitter: JCVI


ncbi_country: USA: Maryland

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella grimontii


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Zhejiang

ncbi_isolation_source: soil

ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: Shenzhen People's Hospital


ncbi_isolation_source: dairy farm

ncbi_organism_name: Mammaliicoccus sp. P-M59

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Sphaerobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Tunisia: Sfax

ncbi_isolation_source: phosphogypsum

ncbi_organism_name: Pseudomonas sp. BRM28

ncbi_submitter: National Center for Nuclear Sciences and Technology (CNSTN)


ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Coprococcus comes

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Guangzhou

ncbi_isolation_source: blood

ncbi_submitter: zhejiang University


ncbi_isolation_source: microbes were collected at JL-Dive96-S01

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Gansu

ncbi_submitter: Center for Disease Control and Prevention of Chinese PLA


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Pakistan

ncbi_isolation_source: oil contaminated soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Fatima Jinnah Women University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Aichi Prefectural Tobu Livestock Hygiene Service Center


ncbi_country: China: Jinan; Liaocheng

ncbi_isolation_source: feces

ncbi_submitter: shandong university


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: Papua New Guinea

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: United Kingdom

ncbi_isolation_source: Left fore

ncbi_submitter: University of Liverpool


ncbi_country: USA: CA

ncbi_isolation_source: bovine cow joint cavity

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: caecum

ncbi_organism_name: Muribaculum sp. An287

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Empedobacter falsenii

ncbi_submitter: Yangzhou University


ncbi_country: Chile

ncbi_isolation_source: salmon

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Synergistes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_country: USA: Athens; GA

ncbi_isolation_source: carcass rinsate

ncbi_strain_identifiers: SH-2813-Parental 2

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis KT-0023

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Ontario

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Enterococcus faecium JE1

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: Corynebacterium argentoratense

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Serbia

ncbi_isolation_source: blood

ncbi_submitter: Faculty of Medicine University of Belgrade


ncbi_isolation_source: human gut

ncbi_organism_name: Eisenbergiella tayi


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Streptomyces virginiae

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Colorado

ncbi_isolation_source: nasal and infraorbital sinuses

ncbi_organism_name: Avibacterium sp. 20-15

ncbi_submitter: University of Wyoming


ncbi_country: USA

ncbi_organism_name: Neisseria iguanae

ncbi_submitter: China disease prevention and control center


ncbi_assembly_name: freshwater MAG --- Loc090519-4m_bin-744

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: France: Tours

ncbi_isolation_source: infection

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Genomic Research Laboratory (GRL)


ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Brachyspira pulli

ncbi_submitter: Animal and Plant Health Agency


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: uncultured Hyphomicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Synechococcus sp. W2B2

ncbi_submitter: ShanDong University


ncbi_country: Australia: Queensland

ncbi_submitter: Andrew Barnes's shared submissions


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA197

ncbi_submitter: Broad Institute


ncbi_assembly_name: IMG-taxon 2695420941 annotated assembly

ncbi_organism_name: Clostridium fallax

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Taiwan: Taoyuan

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_submitter: MRSN BI Team


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Azamiibacteriota;s__Candidatus Azambacteria bacterium RIFCSPLOWO2_02_FULL_44_14


ncbi_country: USA: CT

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China

ncbi_isolation_source: food

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_organism_name: Vibrio cholerae RC9

ncbi_submitter: Los Alamos National Laboratory (LANL), National Microbial Pathogen Data Resource (NMPDR)


ncbi_country: Russia

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_organism_name: Wolbachia endosymbiont of Drosophila leontia

ncbi_submitter: University of Montana


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium RIFCSPHIGHO2_01_FULL_63_20


ncbi_country: Lebanon

ncbi_submitter: ANSES


ncbi_country: Colombia: Duitama

ncbi_isolation_source: non-complicated Urinary tract infection-ER

ncbi_submitter: Clinical Epidemiology from Colombia Research Group (GRECO-UPTC)


ncbi_country: India

ncbi_isolation_source: Diarrhea

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Candidatus Scatomorpha sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;x__unclassified Candidatus Scatomorpha;s__Candidatus Scatomorpha sp.


ncbi_country: China: South China Sea

ncbi_isolation_source: fluid

ncbi_organism_name: Endozoicomonadaceae bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: China: Anhui

ncbi_isolation_source: Pleural effusion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_organism_name: Micropepsales bacterium

ncbi_submitter: East China Normal University


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Italy

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus M899


ncbi_country: Switzerland: Zurich

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: University of Bern


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Salmonella sp. SKLX079264

ncbi_submitter: Zhejiang university


ncbi_organism_name: Pediococcus parvulus

ncbi_submitter: University of Alberta


ncbi_organism_name: Gimesia chilikensis

ncbi_submitter: JNTUH


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Ghent University


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Xiamen University


ncbi_isolate: SPRUCE 165

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_strain_identifiers: SPRUCE 165

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Bacillus safensis

ncbi_submitter: Guizhou University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Paenisporosarcina sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Legionella pneumophila subsp. pneumophila

ncbi_strain_identifiers: Lp02 dksA1

ncbi_submitter: University of Manitoba


ncbi_organism_name: uncultured Polaromonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Spirosomataceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Streptomyces sp. NPDC058734

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: The East China Sea

ncbi_isolation_source: surface seawater

ncbi_organism_name: bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Tongji University


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Escherichia coli

ncbi_submitter: UIUC


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: China: Yunfu Pyrite Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Synergistales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human gut

ncbi_organism_name: Blautia sp. AF19-34

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Saint Kitts and Nevis

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: INDICASAT AIP


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_country: China: Qingdao

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: China Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_organism_name: Bartonella taylorii

ncbi_submitter: Unite de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE) CNRS, Faculte de Medecine, Universite de la Mediterranee, Marseille, France


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Veillonella parvula

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Finland: Lake Saimaa

ncbi_isolation_source: lice collected 2009 through 2017 from Pusa hispida saimensis

ncbi_organism_name: Deinococcus sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Dialister invisus


ncbi_organism_name: uncultured Alteromonadaceae bacterium


ncbi_organism_name: Microcoleus sp. MON2_D5

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_organism_name: Carnobacterium maltaromaticum

ncbi_submitter: UNIV-LORRAINE


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Candidatus Izemoplasma sp.

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;f__Candidatus Izemoplasmataceae;g__Candidatus Izemoplasma;x__unclassified Candidatus Izemoplasma;s__Candidatus Izemoplasma sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: Russia: Saratov region

ncbi_isolate: biotype 1

ncbi_isolation_source: fetus

ncbi_organism_name: Brucella melitensis 548

ncbi_strain_identifiers: biotype 1;548

ncbi_submitter: The Federal Goverment Health Institution "Stavropol Plague Control Reseach Institute" of the Federal Service for Supervision in the Sphere of Consumer Rights Protection and Human Welfare


ncbi_organism_name: Mycobacterium tuberculosis KT-0099

ncbi_submitter: Broad Institute


ncbi_country: USA: Utah

ncbi_isolation_source: blood stream

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Intermountain Healthcare


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Panama

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis PanR0208

ncbi_submitter: Texas A&M University


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: University of Sao Paulo


ncbi_country: USA: IA

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: China: Zhejiang

ncbi_isolation_source: coastal sediment

ncbi_organism_name: Pontibacter anaerobius

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_assembly_name: Rumen uncultured genome RUG14628

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Parvimonas micra

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Gallionellaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_organism_name: Edwardsiella anguillarum ET081126R

ncbi_submitter: East China University of Science and Technology


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_country: Germany: Animal Facility; Justus-Liebig-University; Giessen

ncbi_isolation_source: Surface of a polyethylene microplastic particle present in tank 6 of a marine aquarium containing stony-coral fragments and water maintained at 26 degree C

ncbi_organism_name: Halomonas sp. THAF5a

ncbi_submitter: Uni Bielefeld


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: Brazil:Sao Paulo; Sao Paulo

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia sp. BIOML-A7

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Phocaeicola vulgatus


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Spain: Santander

ncbi_isolation_source: urinary tract infection

ncbi_submitter: AstraZeneca


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;s__Candidatus Gottesmanbacteria bacterium RIFCSPHIGHO2_01_FULL_40_15


ncbi_organism_name: Arenimonas sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Italy

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sapienza University of Rome


ncbi_country: Switzerland

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Aliiroseovarius conchicola

ncbi_submitter: Hannam University


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Italy: Panarea

ncbi_isolation_source: algae

ncbi_organism_name: Tautonia plasticadhaerens

ncbi_strain_identifiers: ElP

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: India

ncbi_isolation_source: porcine pig heart

ncbi_submitter: FDA/CFSAN


ncbi_submitter: Sao Paulo state (Brazil) Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas campestris;x__Xanthomonas campestris pv. campestris;x__Xanthomonas campestris pv. campestris str. ATCC 33913


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_organism_name: Bacillus cereus group sp. BceL210

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL210


ncbi_country: South Korea: Jeongeup-si

ncbi_isolation_source: Canine feces

ncbi_organism_name: Bifidobacterium longum

ncbi_strain_identifiers: CACC 517

ncbi_submitter: Center for Industrialization of Agricultural and Livestock Microorganisms


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: urine

ncbi_submitter: Delaware Public Health Lab


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_country: USA: DE

ncbi_organism_name: Escherichia coli DEC13B

ncbi_submitter: Institute for Genome Sciences


ncbi_country: United Kingdom: Scotland; Aberdeen; Scottish Rural College (SRUC) Craibstone

ncbi_isolation_source: agricultural soil; 12C-CH4 incubated pH 4.5 or pH 7.5; selected DNA (low %GC) through ClCs fractionation

ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Ecole Centrale de Lyon


ncbi_organism_name: Macellibacteroides fermentans

ncbi_submitter: Linnaeus University


ncbi_organism_name: uncultured Tissierellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: Universidade Federal Fluminense


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_country: Jamaica

ncbi_submitter: Public Health Ontario


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: Colorado State University


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: United Kingdom

ncbi_isolation_source: infant feces

ncbi_organism_name: Lactobacillus crispatus

ncbi_strain_identifiers: CIRM-BIA 2111

ncbi_submitter: Brigham Young University


ncbi_country: Germany

ncbi_isolation_source: animal

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: The German Federal Institute for Risk Assessment (BfR)


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: University of Chicago


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Panjab University


ncbi_organism_name: Acidaminococcus fermentans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Oxford


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Brown University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: Turkey: Samsun

ncbi_organism_name: Nocardiopsis sp. B62

ncbi_submitter: Ondokuz Mayis University


ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Pseudonocardiales;f__Pseudonocardiaceae;g__Pseudonocardia;s__Pseudonocardia asaccharolytica;x__Pseudonocardia asaccharolytica DSM 44247 = NBRC 16224


ncbi_country: Sri Lanka: Peradeniya

ncbi_isolation_source: Banana plant endorhizosphere

ncbi_organism_name: Pseudomonas sp. BW16M2

ncbi_submitter: KU Leuven


ncbi_country: USA: Georgia

ncbi_isolation_source: poultry carcass

ncbi_submitter: USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: United Kingdom: London

ncbi_isolation_source: Lung abscess

ncbi_organism_name: Corynebacterium kutscheri

ncbi_submitter: SC


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Almonds

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Rutgers University


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Campylobacter coli

ncbi_submitter: WAGENINGEN UR


ncbi_country: Germany: Freising

ncbi_isolation_source: Lupin moromi fermentation

ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Porticoccus sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: USA: San Francisco

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Santa Clara University


ncbi_country: Czech Republic: Praha

ncbi_isolation_source: suture swab

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Charles University in Prague


ncbi_organism_name: Stenotrophomonas pavanii


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_country: Australia: New South Wales

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_country: India

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: Peru: Lima

ncbi_isolation_source: livestock

ncbi_submitter: Universidad Andres Bello


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: respiratory tract

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: Texas

ncbi_isolation_source: Marmoset fecal swabs from University of Texas Health Sciences Center at San Antonio

ncbi_organism_name: Bifidobacterium sp. UTCIF-1

ncbi_submitter: University of Idaho


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1641 from squamous cell carcinomas patient MST029

ncbi_submitter: University of Queensland


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidad de Concepcion


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_submitter: JCVI


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Houston

ncbi_organism_name: Escherichia coli O25b:H4-ST131

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_country: USA: Idaho

ncbi_isolation_source: freshwater surface biofilm

ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: University of Connecticut Graf Lab


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: deep subsurface microcosm

ncbi_organism_name: uncultured Desulfosporosinus sp.

ncbi_submitter: VTT Technical Research Centre of Finland Ltd


ncbi_country: Germany: Heidelberg

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Heidelberg University Hospital


ncbi_organism_name: Streptococcus hyointestinalis

ncbi_submitter: University of shanghai for Science and Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Hyphomonas sp. Mor2

ncbi_submitter: UCSD


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Glutamicibacter soli

ncbi_submitter: Tang lab


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: China

ncbi_organism_name: Spiroplasma melliferum

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Jiangxi

ncbi_organism_name: Acinetobacter sp. YH12083

ncbi_submitter: South China Agricultural University


ncbi_country: Kenya: Laikipia

ncbi_isolation_source: Camel

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_submitter: UMR 1137 IAME


ncbi_assembly_name: Rumen uncultured genome RUG13478

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces sp. 021-4

ncbi_submitter: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences


ncbi_country: USA: Chicago

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_organism_name: Streptococcus sp. 27098_8_148

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_country: South Africa: King George V Hospital; Durban

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0053

ncbi_submitter: Broad Institute


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Kenya: Nairobi

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: USAMRD-A


ncbi_country: United Kingdom

ncbi_isolation_source: Farm

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Nottingham


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: McGill University


ncbi_organism_name: Robiginitalea sp.

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Eubacterium sp. AF22-9

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. AF22-9


ncbi_country: China:Jilin Province

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli O78

ncbi_submitter: The First Hospital of Jilin University


ncbi_country: USA: PA

ncbi_isolation_source: bovine cow intestine small

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Desulfonatronospira sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: metagenome

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: University of Queensland


ncbi_country: Hong Kong

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus R0357


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli FVEC1302


ncbi_organism_name: Streptococcus pyogenes

ncbi_strain_identifiers: Isolate 18

ncbi_submitter: University of Siena


ncbi_country: Spain: Asturias

ncbi_organism_name: Yaniella sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Acinetobacter pittii

ncbi_strain_identifiers: Sil MILK 7

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: China: Anhui

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Science and Technology of China


ncbi_country: China: Hubei

ncbi_isolation_source: food

ncbi_submitter: China National Centre for Food Safety Risk Assessment


ncbi_organism_name: Vibrio sp. Vb2658

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: North West University


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Trinity College Dublin