ncbi_country: China: Xining

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium sp. WYCCWR 11128

ncbi_strain_identifiers: WYCCWR 11128

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bilophila sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Metropolitan Atlanta

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae GA13499

ncbi_submitter: Institute for Genome Sciences


ncbi_assembly_level: Complete Genome

ncbi_country: China: huangshi

ncbi_isolation_source: soil

ncbi_organism_name: Stenotrophomonas sp. CD2

ncbi_submitter: Huanggang Normal University


ncbi_assembly_level: Scaffold

ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Bacteroides sp. CAG:144

ncbi_submitter: DTU


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


gtdb_representative: t

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0191R

ncbi_submitter: Broad Institute


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Volar forearm swab

ncbi_organism_name: Micromonospora chalcea

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Lachnospiraceae bacterium UBA7292

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: NIZO food research


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Dubosiella sp.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.


ncbi_country: Singapore

ncbi_isolation_source: Sewage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National University of Singapore


ncbi_country: China: Pearl River estuary

ncbi_isolation_source: surface sediment from the estuary of Pearl river treated with pyrene for 24 days

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Shantou University


ncbi_organism_name: Paludibacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Harrisoniibacteriota;s__Candidatus Harrisonbacteria bacterium RIFCSPHIGHO2_01_FULL_44_13


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_organism_name: Neisseria sp. P0004.S004

ncbi_submitter: Rochester Institute of Technology


ncbi_isolation_source: not available: to be reported later

ncbi_submitter: SC


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11442

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_submitter: CDC


ncbi_organism_name: Polyangia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Schaalia sp.

ncbi_submitter: University of Minnesota


ncbi_organism_name: Paraclostridium bifermentans

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: China: Guangxi Province

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_country: China:Yuncheng; Shanxi

ncbi_isolation_source: grape fruit

ncbi_organism_name: Bacillus sp. K1

ncbi_submitter: Yuncheng University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. K1


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Mitsuokella multacida

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: EPFL


ncbi_country: Spain: Rincon de la Victoria; Malaga; Cueva del Tesoro

ncbi_isolation_source: air of cave

ncbi_organism_name: Fredinandcohnia onubensis

ncbi_submitter: Stabvida


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Idiomarina sp. UBA6937

ncbi_submitter: University of Queensland


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: Chesapeake Bay

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Clemson University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: University of Chicago


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Zhejiang

ncbi_isolation_source: Chicken Droppings

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Tang lab


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Wuhan

ncbi_isolation_source: lavage fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhongnan Hospital of Wuhan University


ncbi_submitter: Contra Costa Public Health Laboratory submission group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Lebanon

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Lebanese American University


ncbi_organism_name: bacterium

ncbi_submitter: Diversite, Ecologie et Evolution Microbienne, Unite Ecologie Systematique et Evolution


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;x__unclassified Spiroplasma;s__Spiroplasma endosymbiont of Melanargia galathea


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasma sp.


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: uncultured bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: Alberta;Edmonton

ncbi_isolation_source: rectal swab

ncbi_submitter: Food and Water Safety Consortium


ncbi_assembly_level: Chromosome

ncbi_organism_name: Mycobacterium canetti

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Ktedonobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: India: Bihar; Buxar; Buxar

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: Small intestine

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Azospirillum sp.

ncbi_submitter: EMG


ncbi_country: Honduras: Cortes; San Pedro Sula

ncbi_isolation_source: Endobronchial tube

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Ohio

ncbi_isolation_source: miscellaneous body fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: China: The East China Sea

ncbi_isolation_source: oxic surface sediment

ncbi_organism_name: Algicola sp.

ncbi_submitter: Ocean University of China


ncbi_country: India: Himachal Pradesh

ncbi_isolation_source: indegenous indian fermentd foods

ncbi_organism_name: Bacillus paralicheniformis

ncbi_strain_identifiers: krg1 shilja

ncbi_submitter: CSIR CFTRI


gtdb_type_species_of_genus: t

ncbi_country: Germany

ncbi_isolation_source: profundal sediment sludge from Lake Constance

ncbi_organism_name: Methyloglobulus morosus KoM1

ncbi_refseq_category: reference genome

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: Faeces


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Campylobacter lari

ncbi_submitter: Croatian Veterinary Institute, Zagreb


ncbi_country: USA: Crystal Geyser near Green River; Utah


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: marine

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Queensland


ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Boston College


ncbi_organism_name: Peptoniphilus lacrimalis

ncbi_submitter: The Forsyth Institute


ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Cellulophaga sp. Ld12

ncbi_submitter: Station Biologique de Roscoff


ncbi_organism_name: Caulobacterales bacterium

ncbi_submitter: University of Galway


ncbi_submitter: University of Antwerp


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: KU Leuven


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Proteus vulgaris

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Aquabacterium sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__unclassified Aquabacterium;s__Aquabacterium sp.


ncbi_organism_name: Campylobacter lari

ncbi_submitter: Croatian Veterinary Institute, Zagreb


ncbi_organism_name: Saccharopolyspora sp. ID03-671

ncbi_submitter: Indonesian Institute of Sciences


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: freshwater MAG --- Erken-D4_bin-0256

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Tissierellia bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Bacilli bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Livermore; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: Norway

ncbi_isolation_source: caecum

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Norwegian Veterinary Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: China

ncbi_organism_name: Salinibacterium sp. ZJ77

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cellvibrionales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Campylobacter coli

ncbi_submitter: chu de bordeaux


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_organism_name: Escherichia coli TA014

ncbi_submitter: Broad Institute


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bradyrhizobium sp. S3.12.5

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: blood

ncbi_submitter: JCVI


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Japan:Ibaraki; Tsukuba

ncbi_isolation_source: fronds of wild duckweeds

ncbi_organism_name: Bryobacterales bacterium F-183

ncbi_submitter: Bioproduction Research Institute, Department of Life Science and Biotechnology, National Institute of Advanced Industrial Science and Technology


ncbi_country: Canada: Lacombe

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: AAFC


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus JCM 2413


ncbi_organism_name: Clavibacter sepedonicus

ncbi_strain_identifiers: GBBC 277

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_country: South Africa: Sodwana bay

ncbi_isolation_source: Swimming pool water

ncbi_organism_name: Pseudomonas sp. BDPW

ncbi_strain_identifiers: BDPW

ncbi_submitter: University of Johannesburg


ncbi_organism_name: Yersinia pestis PY-92

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Lachnoclostridium sp. UBA3775

ncbi_submitter: University of Queensland


ncbi_organism_name: Acinetobacter guillouiae


ncbi_organism_name: Kluyvera intermedia

ncbi_submitter: McGill University


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: Stellenbosch University


ncbi_country: Kenya

ncbi_organism_name: Escherichia coli


ncbi_country: Japan

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Yonsei University


ncbi_country: Greece: Athens

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Unniversity of Queensland


ncbi_organism_name: synthetic Escherichia coli C321.deltaA

ncbi_submitter: Church Lab, Department of Genetics, Harvard Medical School


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Caecum

ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Paenibacillus sp. FSL R7-0272

ncbi_submitter: Penn State


ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: blood from hospitalized preterm neonate

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Washington University in St. Louis


ncbi_isolation_source: fermented sausage

ncbi_organism_name: Staphylococcus carnosus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_country: USA: Berkeley

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Genskey


ncbi_country: China: Fujian

ncbi_organism_name: Rhodospirillaceae bacterium MC!

ncbi_submitter: Third Institute of Oceanography, SOA


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: IHU - Mediterranee Infection


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_organism_name: Segatella oris


ncbi_assembly_name: Rumen uncultured genome RUG11228

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_country: Brazil: Minas Gerais; Belo Horizonte

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: fecal samples

ncbi_organism_name: Porphyromonadaceae bacterium

ncbi_submitter: Department of Statistical Genetics, Osaka University Graduate School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_submitter: University of Wisconsin - Madison


ncbi_country: India

ncbi_isolation_source: Biological

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CSIR-IMTECH


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Flammeovirgaceae bacterium UBA7355

ncbi_submitter: University of Queensland


ncbi_country: USA: Iowa

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Institute of Microbiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli BIDMC 19C

ncbi_strain_identifiers: BIDMC 19C

ncbi_submitter: Broad Institute


ncbi_organism_name: Alteriqipengyuania sp.

ncbi_submitter: Tang lab


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_submitter: Quadram Institutte


ncbi_country: USA: NY

ncbi_isolation_source: water

ncbi_organism_name: Escherichia sp. MOD1-EC5438

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_organism_name: Oceanobacillus sp. FSL W7-1281

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Oceanobacillus;x__unclassified Oceanobacillus;s__Oceanobacillus sp. FSL W7-1281


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: USA: New York City

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Clostridiales bacterium UBA7739


ncbi_country: United Kingdom

ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Bifidobacterium dentium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__environmental samples;s__uncultured Candidatus Sumerlaeota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chongqing Medical University


ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Belgium

ncbi_isolation_source: Vitamin B2 feed additive

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Sciensano


ncbi_organism_name: Klebsiella variicola


ncbi_country: USA: Shark River Island; NJ

ncbi_isolation_source: gill tissue

ncbi_organism_name: Solemya velum gill symbiont

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;s__Solemya velum gill symbiont


ncbi_country: France

ncbi_isolation_source: crop

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus pasteurii;x__Lactobacillus pasteurii DSM 23907 = CRBIP 24.76


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Germany

ncbi_isolation_source: military dog fecal sample

ncbi_submitter: Northern Arizona University


ncbi_country: Hong Kong

ncbi_isolation_source: Blood culture

ncbi_organism_name: Helicobacter cinaedi

ncbi_submitter: Hong Kong Sanatorium & Hospital


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater inflow

ncbi_submitter: BIOTEC


ncbi_country: Japan: Awa; Chiba

ncbi_isolation_source: intestinal tract of fish

ncbi_organism_name: Arsenicicoccus piscis

ncbi_submitter: Chung-Ang university


ncbi_country: Netherlands

ncbi_isolation_source: grass rhizosphere soil

ncbi_submitter: Wageningen University & Research


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: tissue

ncbi_organism_name: Phocoenobacter skyensis

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Czech Republic

ncbi_isolation_source: CSF

ncbi_submitter: SC


ncbi_submitter: University of Arizona

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. LT2;x__Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Brigham Young University


ncbi_country: Australia: Newcastle

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Guatemala

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Rhizobium sp. BK418

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: uncultured Bacteroidaceae bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fluviicola sp.

ncbi_submitter: EMG


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: CDPHE SARS-CoV-2 submissions


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Rothia nasimurium

ncbi_submitter: Shihezi University


ncbi_isolation_source: CF patient

ncbi_organism_name: Burkholderia aenigmatica

ncbi_submitter: LM-UGent


ncbi_country: Mexico: El Varal

ncbi_organism_name: Streptomyces sp. VMFN-G11Ma


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: Chile: Yumgy; Atacama

ncbi_isolation_source: desert soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The Atacama Project


ncbi_organism_name: uncultured Rhodospirillales bacterium


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Oceanospirillales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Algibacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Australia: Tasmania; Dairy Farm

ncbi_isolation_source: Hand Milked dairy Milk

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: University of Tasmania


ncbi_organism_name: Novosphingobium sp. YAF33

ncbi_submitter: CCRP


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: midwestern

ncbi_isolation_source: Water from tanks in pens

ncbi_submitter: University of Nebraska-Lincoln

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_country: Australia

ncbi_strain_identifiers: ATCC BAA-688

ncbi_submitter: ATCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant pinnipedii


ncbi_country: India

ncbi_isolation_source: Mastitis Milk

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: IVRI Kol CP4

ncbi_submitter: NDRRI


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Acetobacter sp.


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Erythrobacteraceae bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Ery_DSM 6997_v1

ncbi_country: Japan: Aburatsubo Inlet; Kanagawa

ncbi_isolation_source: seaweed

ncbi_organism_name: Erythrobacter longus

ncbi_submitter: Xiamen University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Japan: Tokyo

ncbi_isolation_source: biofilm in a cooling tower

ncbi_organism_name: Falsiroseomonas tokyonensis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: a soda lake

ncbi_organism_name: Cohaesibacter haloalkalitolerans

ncbi_submitter: Third Institute of Oceanography, State Oceanic Administration


ncbi_organism_name: Nitrobacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: Unknown Proteobacterium AM_0240

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Universidade Federal de Sao Carlos - UFSCar


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_country: USA: New York

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Rochester Institute of Technology


ncbi_country: USA: CA

ncbi_isolation_source: organic baby spinach

ncbi_organism_name: Listeria monocytogenes CFSAN002349

ncbi_submitter: FDA


ncbi_country: USA: FL

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_isolation_source: feces


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Dysosmobacter welbionis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Holosporaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: uncultured Ruminiclostridium sp.


ncbi_isolation_source: Red wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: DaLian MinZu University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Panama: Bocas del Toro

ncbi_isolation_source: gill

ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: University of California, Davis


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-141

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_strain_identifiers: new MAG-141

ncbi_submitter: Micoorganism


ncbi_country: Germany

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SC


ncbi_country: South Africa: King George V Hospital; Durban

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0004

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_country: USA

ncbi_organism_name: Bordetella pertussis CHLA-20

ncbi_submitter: JCVI


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Argentina: La Pampa

ncbi_organism_name: Pseudomonas ogarae

ncbi_submitter: National Institute of Agricultural Technology (INTA)


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Desulfobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus safensis

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Gaiellaceae bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Comenius University Science Park


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_submitter: Southern University of Science and Technology


ncbi_country: Brazil: Blumenau

ncbi_submitter: LNCC


ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Alkalispirochaeta sp.


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacteroidota bacterium


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Lactiplantibacillus plantarum ST-III

ncbi_strain_identifiers: ST-III

ncbi_submitter: Technology Center of Bright Dairy & Food Co., Ltd


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter bacterium nBUS_33


ncbi_country: Arctic Ocean

ncbi_isolation_source: sediment

ncbi_organism_name: Hymenobacter siberiensis

ncbi_submitter: Korea Polar Research Institute


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Cyanobacteria bacterium REEB417

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium REEB417


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus barcinonensis

ncbi_submitter: Shin's Lab


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Agromyces sp.


ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: Peru

ncbi_isolation_source: String method

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National Cancer Institue


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: University of Chicago


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Malacoplasma sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Zurich


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Arcticimaribacter sp.

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Candidatus Arcticimaribacter;x__unclassified Candidatus Arcticimaribacter;s__Candidatus Arcticimaribacter sp.


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Aerococcus urinae


ncbi_country: United Kingdom: Newcastle

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: bioMerieux


ncbi_country: USA: CA

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Broad Institute


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Vibrio sp. MACH09

ncbi_submitter: Plant Environmental Microbiology Group, Institute of Plant Science and Resources, Okayama University


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-402-K04

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Canada: Drayton Valley; Alberta

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_country: Canada: Vancouver

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_country: USA: New York

ncbi_isolation_source: sediment

ncbi_organism_name: Pseudomonas sp. DCB_Q

ncbi_submitter: Dominican College of Blauvelt


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_country: Kenya

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Acetobacter sp.


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: United Kingdom

ncbi_isolation_source: lung

ncbi_submitter: University of Oxford


ncbi_country: Spain

ncbi_isolation_source: cloaca from white stork nestling

ncbi_submitter: University of La Rioja


ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Ingluvial swab

ncbi_submitter: University of Sao Paulo


ncbi_country: USA: North Carolina

ncbi_isolation_source: Udder of Holstein cow

ncbi_organism_name: Macrococcus bovicus

ncbi_submitter: Teagasc Food research


ncbi_country: Greenland

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus altitudinis

ncbi_strain_identifiers: NRRL BD-188

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA

ncbi_isolation_source: bronchial fluid

ncbi_organism_name: Mycobacterium tuberculosis TRS21

ncbi_submitter: Vanderbilt University


ncbi_country: Taiwan

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Centers for Disease Control, Taiwan


ncbi_country: Denmark

ncbi_organism_name: Nocardiopsis listeri

ncbi_submitter: Quadram Institutte


ncbi_country: Venezuela

ncbi_organism_name: Shigella sonnei


ncbi_country: USA: MI

ncbi_isolation_source: ground beef

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Chromatiaceae bacterium

ncbi_submitter: University of Calgary


ncbi_country: USA: Iowa

ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: Iowa State University


ncbi_organism_name: Arthrobacter bambusae

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: marine

ncbi_organism_name: Synechococcus sp. UBA9887

ncbi_submitter: University of Queensland


ncbi_country: Australia

ncbi_isolation_source: 3 replicate cellulose-degrading anaerobic digesters sampled at day 96 and day 362

ncbi_organism_name: Spirochaetales bacterium Spiro_01


ncbi_isolate: Water

ncbi_isolation_source: phylogroupE

ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR 1137 IAME


ncbi_country: Viet Nam

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-2707

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: stool sample

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: CA

ncbi_isolation_source: canine urine


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Iowa


ncbi_isolation_source: human

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Sphingomonas echinoides

ncbi_submitter: University of East Anglia


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Parabacteroides goldsteinii


ncbi_organism_name: Chryseobacterium balustinum


ncbi_country: China: Sichuan

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: West China Hospital, Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Comamonas denitrificans

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: South Korea

ncbi_isolation_source: feces

ncbi_organism_name: Tumebacillus avium

ncbi_submitter: Kyung Hee University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Cyanobium usitatum str. Tous

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Syntrophobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Ruegeria atlantica

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces somaliensis

ncbi_submitter: Newcastle University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Cloacibacillus sp.

ncbi_submitter: EMG


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- Umea2_bin-0908

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: blood from hospitalized preterm neonate

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Washington University in St. Louis


ncbi_country: Belgium: Brussels

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cliniques Universitaires Saint-Luc


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: India: Mumbai

ncbi_isolation_source: Starvation in Luria Bertani broth

ncbi_submitter: Bhabha Atomic Research Centre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Cambodia

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Tenacibaculum sp. P3-BQ1

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Peribacillus simplex

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: Australia: south east Tasmania

ncbi_isolation_source: gastrointestinal mucosa

ncbi_organism_name: Aliivibrio sp. S4MY4

ncbi_submitter: University Of Tasmania, Tasmania Inst Agriculture


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Atopobiaceae bacterium UBA5372

ncbi_submitter: University of Queensland


ncbi_country: USA: WA

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Washington


ncbi_isolation_source: lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Oxford


ncbi_organism_name: Micromonospora chalcea

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Segatella copri

ncbi_submitter: UIUC


ncbi_organism_name: Streptomyces turgidiscabies

ncbi_submitter: Inner Mongolia Potato Engineering & Technology Research Center


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Zurich


ncbi_country: China: Shandong

ncbi_isolation_source: fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: Provincial Hospital Affiliated to Shandong First Medical University


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond H1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Montreal

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Environmental; maize

ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Shanghai Children's Hospital


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Indonesia

ncbi_isolation_source: sea water from Semarang Port; Java

ncbi_organism_name: Tropicibacter naphthalenivorans

ncbi_strain_identifiers: CECT 7648

ncbi_submitter: UVEG


ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain: Catalunya

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_organism_name: Pseudoalteromonas sp. AS84

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA

ncbi_organism_name: Burkholderia metallica

ncbi_submitter: University of Michigan


ncbi_organism_name: Heyndrickxia coagulans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: United Kingdom:Scotland

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient9 sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_country: USA: Durham; NC

ncbi_isolation_source: skin

ncbi_organism_name: Corynebacterium sp. MSK012

ncbi_submitter: Duke University


ncbi_country: Brazil

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: blood

ncbi_submitter: Adolfo Lutz Institute


ncbi_country: Brazil: Minas Gerais

ncbi_organism_name: Pseudomonas coronafaciens pv. garcae

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. garcae


ncbi_organism_name: Lichenihabitans sp. Uapishka_5

ncbi_submitter: McGill University


ncbi_country: China: inbred laboratory strains of WBPH at USTC

ncbi_strain_identifiers: cSfur

ncbi_submitter: University of Science and Technology of China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Amoebophilaceae;g__Candidatus Cardinium;x__unclassified Candidatus Cardinium;s__Cardinium endosymbiont of Sogatella furcifera


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Bigelow Laboratory For Ocean Sciences


ncbi_organism_name: uncultured Sphaerochaeta sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Helicobacter ganmani

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Canada: Albert

ncbi_isolation_source: Dinosaur fossil bone

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Princeton University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Legionella pneumophila


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: Technical University of Denmark


ncbi_country: Montenegro: Kotor

ncbi_isolation_source: gills

ncbi_organism_name: Candidatus Thiodiazotropha lotti

ncbi_submitter: University of California, Davis


ncbi_country: China: Hohhot

ncbi_isolation_source: cheese

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: university


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Deinococcus saxicola

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shanghai General Hospital


ncbi_organism_name: Oxalobacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Houston Methodist Hospital & Research Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Algeria: Gara Djebilet Mine

ncbi_isolation_source: crushed rocks in Gara Djebilet Iron Mine

ncbi_organism_name: Microbacterium oryzae

ncbi_submitter: University of New Hampshire


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Azambacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Azamiibacteriota;x__unclassified Candidatus Azambacteria;s__Candidatus Azambacteria bacterium


ncbi_isolation_source: human skin metagenome

ncbi_organism_name: uncultured Francisella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Maribacter sp.


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Universidad de las Americas


ncbi_country: USA: Metropolitan Atlanta

ncbi_organism_name: Streptococcus pneumoniae GA47778

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Vreelandella venusta

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ISU 968

ncbi_submitter: USDA-ARS


ncbi_isolation_source: caecum

ncbi_organism_name: Enterocloster aldenensis

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: bacterium

ncbi_submitter: Universite Laval


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Slackia isoflavoniconvertens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: China CDC


ncbi_isolate: SPRUCE 115

ncbi_organism_name: Candidatus Dormibacteria bacterium

ncbi_strain_identifiers: SPRUCE 115

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;x__unclassified Candidatus Dormibacteria;s__Candidatus Dormibacteria bacterium


ncbi_submitter: University of the Witwatersrand


ncbi_organism_name: Agathobaculum butyriciproducens


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of South Africa


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: DS-I Africa


ncbi_organism_name: [Clostridium] innocuum


ncbi_organism_name: Aquipseudomonas alcaligenes

ncbi_submitter: Aarhus University


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Sporosarcina soli

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Salmonella sp. C3270

ncbi_submitter: Sichuan University


ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus cereus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: marine sediment

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Institute of Deep-Sea Science and Engineering, Chinese Academy of Sciences


ncbi_country: Germany: Brandenburg; Erpe River

ncbi_isolation_source: urban river

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pirellulales bacterium


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: tropical soil

ncbi_organism_name: Priestia megaterium


ncbi_isolate: AOP30_D2_surf _bin _21

ncbi_organism_name: Pseudomonas putida

ncbi_strain_identifiers: AOP30_D2_surf _bin _21

ncbi_submitter: Genoscope


ncbi_isolation_source: human gut

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_submitter: Spribille Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;x__environmental samples;s__uncultured Cytophagales bacterium


ncbi_organism_name: Salmonella sp. CQ24WZ0464SAL

ncbi_submitter: Wanzhou CDC


ncbi_organism_name: Shewanella algae

ncbi_submitter: University of Cadiz


ncbi_organism_name: Flavobacterium sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Animal and Plant Health Agency


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_strain_identifiers: Ngtc RS 4

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: human skin

ncbi_submitter: NIH/NHGRI


ncbi_country: USA: Michigan

ncbi_isolation_source: respiratory

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI


ncbi_country: Germany

ncbi_isolation_source: stool

ncbi_submitter: 2nd Faculty of Medicine, Charles University and Motol University Hospital


ncbi_submitter: Lund University


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: USA

ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_country: USA: Georgia;Atlanta

ncbi_isolation_source: sputum

ncbi_submitter: Emory University


ncbi_country: USA: TX

ncbi_isolation_source: giraffe okapi feces

ncbi_submitter: FDA/CFSAN


ncbi_submitter: Colorado State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Shigella flexneri K-227

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: University of Wisconsin Hospital

ncbi_organism_name: Enterococcus faecalis EnGen0402

ncbi_submitter: Broad Institute


ncbi_country: France: Brest

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_submitter: Institute of Environmental Science and Research


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Thailand


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Portugal: Porto

ncbi_organism_name: Acinetobacter baumannii


ncbi_organism_name: Bacteroides ovatus CL02T12C04

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_organism_name: Bradyrhizobium sp. SZCCHNS30122

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: PA

ncbi_isolation_source: Young Turkeys

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: CVM N60200F

ncbi_submitter: FDA


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 307

ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: SNUC 5038

ncbi_submitter: University of Calgary


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Paraglaciecola sp.

ncbi_submitter: EMG


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Tissierellia bacterium

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Joint Microbiome Facility


ncbi_country: China: Guangdong Province

ncbi_isolation_source: forest soil

ncbi_organism_name: Myxococcus qinghaiensis

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Gillisia sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_assembly_name: Rumen uncultured genome RUG11254

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Mexico

ncbi_organism_name: Corynebacterium auriscanis

ncbi_submitter: UFMG


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Spongiibacter sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Italy

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bologna


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-402-C22

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Czech Republic: Kreckov

ncbi_isolation_source: water with organic detritus

ncbi_organism_name: Acinetobacter pragensis

ncbi_submitter: National Institute of Public Health


ncbi_country: United Kingdom

ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: South Korea:Cheongju

ncbi_organism_name: Leuconostoc citreum

ncbi_strain_identifiers: EFEL 2700

ncbi_submitter: Seul-Ah Kim's shared submissions


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Nanjing

ncbi_isolation_source: tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Qingdao

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Shandong University


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Vampirovibrio sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Muiribacteriota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Muiribacteriota;x__unclassified Candidatus Muiribacteriota;s__Candidatus Muiribacteriota bacterium


ncbi_country: Pakistan: Muzaffarabad Azad Kashmir

ncbi_isolation_source: wastewater

ncbi_organism_name: Acinetobacter sp. I-MWF

ncbi_strain_identifiers: I-MWF

ncbi_submitter: Lund University


ncbi_country: Sweden

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis BTB07-070

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: University of Texas at Austin


ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Guptibacillus hwajinpoensis

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Imperial College London


ncbi_assembly_name: JanthLiv

ncbi_country: Chile: Cajon del Maipo

ncbi_isolation_source: Wet soil samples (mud) from a Drimys winteri forest located in a sector from Cajon del Maipo called El canelo

ncbi_organism_name: Janthinobacterium lividum

ncbi_strain_identifiers: MTR

ncbi_submitter: Universidad de Santiago de Chile


ncbi_country: China: Anhui

ncbi_isolation_source: bile

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_country: China: Hunan

ncbi_isolation_source: bed sheets

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: China: Tianjin

ncbi_isolation_source: bean paste

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Tianjin University of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Escherichia coli

ncbi_submitter: Uppsala University


ncbi_organism_name: Parvibaculales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Campylobacter concisus


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: Tsinghua University


ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Spain: Asturias

ncbi_isolation_source: blood

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Angelakisella sp.


ncbi_country: USA:New York; Morrisania

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus


ncbi_country: China: Hangzhou

ncbi_isolation_source: Vaginal secretion

ncbi_organism_name: Mobiluncus mulieris

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Denmark: Hilleroed; Ny Hammersholt; compost 5 cm deep

ncbi_organism_name: Streptomyces griseus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Agrobacterium pusense

ncbi_strain_identifiers: AAL

ncbi_submitter: Astra Agro Lestari


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: Chesapeake Bay

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Clemson University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: South Korea

ncbi_organism_name: Alkalimarinus alittae

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_country: United Kingdom

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_country: Taiwan: Kaohsiung

ncbi_isolation_source: Tilapia; diseased

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Academia Sinica


ncbi_country: China

ncbi_isolation_source: chicken

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_organism_name: Prevotella sp. UBA7115


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: New Zealand: Aiguilles Island

ncbi_isolation_source: Kyphosus sydneyanus hindgut

ncbi_organism_name: Tannockella kyphosi

ncbi_submitter: Cornell University


ncbi_country: Bangladesh

ncbi_isolation_source: C. aurantifolia

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: CIRAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_assembly_name: Rumen uncultured genome RUG11983

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes ABC020029711

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_organism_name: Oceanivirga salmonicida

ncbi_submitter: Robert Koch Institute


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_assembly_name: Rumen uncultured genome RUG12262

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Odoribacter sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: WTSI


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_organism_name: Coriobacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen people's hospital


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp2 AA82

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp2 AA82

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Parasulfuritortus sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: aquatic

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Stellenbosch University


ncbi_country: China: Chengdu

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Nigeria

ncbi_organism_name: Brucella abortus 65/110

ncbi_submitter: Broad Institute


ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: freshwater MAG --- VK_bin-4252

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Spartobacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;x__environmental samples;s__uncultured Spartobacteria bacterium


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_organism_name: Brucella abortus 03-2770-11


ncbi_country: China: Shandong

ncbi_submitter: China Agricultural University


ncbi_country: Kenya

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: United Kingdom

ncbi_organism_name: Pseudomonas syringae pv. syringae 1212

ncbi_submitter: University of Arizona

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae;x__Pseudomonas syringae pv. syringae 1212


ncbi_organism_name: Shewanella algae

ncbi_submitter: Sanya Peoples Hospital


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Germany: Westerhoefer Bach

ncbi_isolation_source: water

ncbi_organism_name: Pedobacter steynii

ncbi_submitter: Ghent University


ncbi_submitter: Institute for Clinical Pathology and Medical Research


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Duncaniella muris


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_isolation_source: milk

ncbi_submitter: University of queensland


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Malawi

ncbi_isolation_source: Blood


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Candidatus Nanosyncoccus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;x__unclassified Candidatus Nanosyncoccus;s__Candidatus Nanosyncoccus sp.


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Latilactobacillus curvatus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Pikeienuella sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Montana State University


ncbi_organism_name: uncultured Derxia sp.


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Shenzhen

ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: BGI-Shenzhen


ncbi_country: France: Aurillac

ncbi_isolation_source: cheese

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: INRA


ncbi_isolation_source: secretions

ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: Human (feces)

ncbi_submitter: ERI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 39.O.03


ncbi_country: USA: Seattle

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Southwest Medical University


ncbi_country: USA: Vershire; Ely Copper Mine

ncbi_organism_name: Sulfuriferula sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: Universtity Hospital Cologne


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Desulfobacteraceae bacterium


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Butyricicoccaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China:Agricultural Bio-Resources Research Institute; Fujian Academy of Agricultural Sciences; Fuzhou

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_assembly_name: IMG-taxon 2681813509 annotated assembly

ncbi_organism_name: Chryseobacterium ureilyticum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: France: Paris

ncbi_isolation_source: Rectal swab

ncbi_submitter: Saint-Louis Hospital


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: ARRIAM


ncbi_country: Canada: Alberta

ncbi_isolation_source: surface water

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Lethbridge Research and Development Centre


ncbi_organism_name: Treponema sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: United States Department of Agriculture, Agricultural Research Service

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: environmental swab

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 607308-16


ncbi_country: USA: Texas

ncbi_isolation_source: Flea captured from prairie dog burrow showing signs of recent die-off

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Pacific Northwest National Laboratory


ncbi_isolate: YS river water

ncbi_strain_identifiers: YS river water

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Bacillus cereus group sp. BceL196

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL196


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Ensifer sp. Root1298

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: Hungary

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Yale School of Public Health


ncbi_isolation_source: marine metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_country: Czech Republic

ncbi_isolation_source: midguts

ncbi_organism_name: Entomospira culicis

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_organism_name: Mesorhizobium captivum

ncbi_submitter: University of Pretoria


ncbi_country: India

ncbi_isolation_source: marine sediment

ncbi_organism_name: Domibacillus enclensis

ncbi_submitter: CSIR- National Chemical Laboratory


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Xanthomonas vasicola

ncbi_strain_identifiers: IL-2(1) YDC

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: uncultured Prolixibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Anaerobutyricum soehngenii


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Thermosynechococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Desulfobacula sp.


ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Thomasclavelia spiroformis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Streptomyces sp. NPDC052092

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nottingham Trent University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Australia: Clermont; QLD

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium