ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Germany: Freising

ncbi_genome_representation: full

ncbi_isolation_source: Ileal content

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: RWTH Aachen University Hospital


gtdb_representative: t

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Kryptoniota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Kryptoniota;x__unclassified Candidatus Kryptoniota;s__Candidatus Kryptoniota bacterium


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: farmed partridge

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Jagiellonian University


ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Escherichia coli ER2796

ncbi_submitter: New England Biolabs

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli K-12;x__Escherichia coli ER2796


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_assembly_level: Scaffold

ncbi_country: USA: Georgia

ncbi_isolation_source: Chicken processing plant

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Texas Tech University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia obeum

ncbi_submitter: University of Chicago


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Russia: Moscow

ncbi_isolation_source: nasal swab

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Medical Research Center for Children's Health


ncbi_country: China: Sichuan Province;Guangyuan

ncbi_isolation_source: soybean root

ncbi_organism_name: Ciceribacter sp. S95

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_isolation_source: cloacal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_country: USA: Florida

ncbi_isolation_source: insect gut; insect collected from Cucurbit plant

ncbi_organism_name: Caballeronia sp. ATUFL_F2_KS42

ncbi_submitter: Emory University


ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: Nanyang Technological University


ncbi_submitter: University of Oviedo


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: INRAE


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F64894

ncbi_submitter: Broad Institute


ncbi_organism_name: Segatella copri

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: Left guttural pouch

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Acetobacter fabarum

ncbi_submitter: Cornell University


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Candidatus Pelethomonas sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Pelethomonas;x__unclassified Candidatus Pelethomonas;s__Candidatus Pelethomonas sp.


ncbi_organism_name: Streptococcus rubneri

ncbi_submitter: Icahn School of Medicine at Mount Sinai


gtdb_type_species_of_genus: t

ncbi_country: Russia: Siberia

ncbi_isolation_source: Sediment surface and water

ncbi_organism_name: Thioalkalivibrio versutus

ncbi_strain_identifiers: AL 2

ncbi_submitter: University of Amsterdam

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Columbia University Medical Center


ncbi_isolation_source: Abdominal surgical drain fluid

ncbi_organism_name: Enterobacter sp. MGH 33

ncbi_strain_identifiers: MGH 33

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter sp. MGH 33


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: USDA-ARS-USNPRC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter japonicus

ncbi_submitter: EMG


ncbi_country: Spain: Madrid

ncbi_isolation_source: blood

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Spanish National Centre for Biotechnology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Marinoscillum sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_organism_name: Bacillus sp. FSL W8-0672

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL W8-0672


ncbi_assembly_level: Chromosome

ncbi_country: Malawi

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WTSI


ncbi_country: China: Jiangsu

ncbi_isolation_source: environmental

ncbi_organism_name: Salmonella enterica


ncbi_country: Australia: Western Australia

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Queensland


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Saudi Arabia: Jizan

ncbi_isolation_source: plant

ncbi_organism_name: Microbacterium sp. JZ31

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: Psychrobacillus sp. FSL K6-4046


ncbi_organism_name: Pseudomonas sp. NBRC 111131

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: USA: New York; Conesus Lake

ncbi_isolation_source: lake water

ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: University of Montana


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Dyella sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wuhan University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: China: Pearl River estuary

ncbi_isolation_source: surface sediment from the estuary of Pearl river treated with pyrene for 30 days

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Shantou University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: Switzerland

ncbi_isolation_source: Poultry meat

ncbi_submitter: CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: Greenland: Baffin Bay

ncbi_isolation_source: marine sediment

ncbi_organism_name: Candidatus Methylomirabilis sp.

ncbi_submitter: University of Vienna

ncbi_taxonomy: d__Bacteria;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__Candidatus Methylomirabilaceae;g__Candidatus Methylomirabilis;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__Candidatus Methylomirabilaceae;g__Candidatus Methylomirabilis;x__unclassified Candidatus Methylomirabilis;s__Candidatus Methylomirabilis sp.


ncbi_country: Finland: Lake Mekkojarvi

ncbi_isolation_source: freshwater

ncbi_organism_name: Polynucleobacter finlandensis

ncbi_refseq_category: reference genome

ncbi_submitter: University of Innsbruck


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Atlantic Ocean: Norwegian Sea; Faavne vent field Eastern mound

ncbi_isolation_source: biosyringe of iron oxide deposits at the base of small chimneys (approx. 20 cm)

ncbi_organism_name: Mariprofundales bacterium

ncbi_submitter: University of Bergen


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Oxford


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Colorado State University


ncbi_assembly_name: Rumen uncultured genome RUG14020

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Stecheria intestinalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Micavibrio sp.


ncbi_organism_name: Christensenella sp.

ncbi_submitter: China Agricultural University


ncbi_country: Brazil: Parana

ncbi_isolation_source: blood

ncbi_organism_name: Leptospira interrogans serovar Copenhageni

ncbi_submitter: Oswaldo Cruz Foundation


ncbi_country: United Kingdom


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: Dd1 Dg nod

ncbi_isolate: Dd1 Dg nod

ncbi_isolation_source: nodule

ncbi_organism_name: Candidatus Protofrankia californiensis

ncbi_strain_identifiers: Dd1 Dg nod

ncbi_submitter: CEBITEC


ncbi_country: China: Jiangsu Province; Yancheng City

ncbi_isolation_source: seawater

ncbi_organism_name: Thalassospira aquimaris

ncbi_submitter: Hohai University


ncbi_country: USA: South Carolina

ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: Broad Institute


ncbi_country: Thailand: Nong Khai

ncbi_isolation_source: food

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; Guaymas Basin; Black smoker hydrothermal vent

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG13

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_submitter: INSTITUTE OF MEDICAL SCIENCES, BANARAS HINDU UNIVERSITY, VARANASI, INDIA


ncbi_organism_name: Streptomyces sp. LaPpAH-95

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Thermoleophilia bacterium


ncbi_country: Canada: Ontario

ncbi_isolation_source: stem

ncbi_organism_name: Pseudomonas syringae pv. tomato

ncbi_strain_identifiers: Pst DC 92-3

ncbi_submitter: Ottawa Research and Development Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. tomato


ncbi_country: New Zealand: Dunedin

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Otago


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chthoniobacter flavus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA

ncbi_organism_name: Blautia obeum

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with hylon

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-145


ncbi_organism_name: Collinsella sp. CLA-JM-H32B

ncbi_submitter: RWTH Aachen University Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: fermentation

ncbi_organism_name: Porphyromonadaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Acinetobacter nosocomialis


ncbi_country: USA: NY; New York City

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_country: Italy

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Escherichia coli

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: South Africa: Schoenmakerskop

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Microscillaceae bacterium

ncbi_submitter: University of Wisconsin, Madison


ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Dongguan

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella sp. L-S1477

ncbi_submitter: South China Agricultural University


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli KTE136

ncbi_submitter: Broad Institute


ncbi_country: China: Hohhot

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: USA: DC

ncbi_isolation_source: Urine clean catch

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: USA: WA

ncbi_submitter: US Food and Drug Administration


ncbi_country: Mexico

ncbi_isolation_source: feces (Mus musculus)

ncbi_submitter: FDA/CFSAN


ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0864


ncbi_country: United Kingdom: University of Surrey; Guildford

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides excrementipullorum


ncbi_country: USA: Madison; WI

ncbi_isolation_source: Conversion residue fermenting bioreactor

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Germany: Hamburg-Reitbrook

ncbi_isolation_source: water

ncbi_organism_name: Gemmatimonas sp. UBA7669

ncbi_submitter: University of Queensland


ncbi_country: China: Jiangsu

ncbi_isolation_source: fecal sample

ncbi_submitter: Yangzhou University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Propionibacterium sp.

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Xylanibacter rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Wolfebacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wolfeibacteriota;x__unclassified Candidatus Wolfebacteria;s__Candidatus Wolfebacteria bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_country: South Africa: Masimong mine in Welkom district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Candidatus Caldatribacterium sp.

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Atribacterota;c__Atribacteria;o__Atribacterales;f__Candidatus Caldatribacteriaceae;g__Candidatus Caldatribacterium;x__unclassified Candidatus Caldatribacterium;s__Candidatus Caldatribacterium sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Nonomuraea fuscirosea

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Mobilibacterium timonense


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Texas; Anna

ncbi_isolation_source: abscessed lymph node

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Texas A&M University


ncbi_country: South Korea

ncbi_isolation_source: plant root

ncbi_organism_name: Paenibacillus oenotherae

ncbi_submitter: Northwest Institute of Eco-Environmental and Resources, Chinese Academy of Sciences, Lanzhou, China


ncbi_organism_name: Psychrobacter pasteurii


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: human

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: Escherichia coli B86

ncbi_submitter: IGS


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Belarus: Minsk

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: Northumbria University


ncbi_organism_name: Streptomyces sp. NPDC005534


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_country: United Kingdom

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: Ab Crete

ncbi_submitter: University of aberdeen


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_country: China: Sichuan

ncbi_isolation_source: cattle farm

ncbi_submitter: sichuan university


ncbi_organism_name: Herbinix sp.

ncbi_submitter: University of Utah


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Jeonbuk National University


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Netherlands

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio jasicida

ncbi_strain_identifiers: MWB 30

ncbi_submitter: Academia Sinica


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Collinsella tanakaei

ncbi_submitter: EMG


ncbi_assembly_name: IMG-taxon 2599185301 annotated assembly

ncbi_organism_name: Mesorhizobium sp. NFR06

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD9027

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: Canada: near Kenora; Ontario; Lake 227; IISD-Experimental Lakes Area

ncbi_isolation_source: Ca. Chloroheliales L227-5C initial enrichment culture; a non-axenic enrichment culture of water from the upper anoxic zone (5 m depth) of a Boreal Shield lake

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate

ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Philippines: Cabalyorisa Cave; Mabini; Pangasinan

ncbi_isolation_source: guano

ncbi_organism_name: Streptomyces sp. AC1-42T

ncbi_submitter: University of Alberta


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: China: in coastal area of Qingdao

ncbi_isolation_source: red seaweed

ncbi_organism_name: Marinomonas sp. FW-1

ncbi_submitter: Ocean University of China


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Portland State University


ncbi_country: Greece: Athens

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Karolinska Institutet


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Acidimicrobiales bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Edinburgh


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: India

ncbi_organism_name: Rothia kristinae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: Vibrio chagasii

ncbi_submitter: Tel Aviv University


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_2 depth 0-3 cm

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: MD

ncbi_isolation_source: Baby Wipes

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_isolation_source: human gut

ncbi_organism_name: Candidatus Blastococcus massiliensis

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Mesorhizobium sp. M0767

ncbi_submitter: Washington State University


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; solid retention time of 6 days

ncbi_organism_name: Ancrocorticia sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Aliarcobacter lanthieri

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_organism_name: Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: uncultured Eggerthella sp.


ncbi_organism_name: Caldimicrobium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces sp. NPDC127105

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Parabacteroides merdae


ncbi_organism_name: Oscillospiraceae bacterium LCP21S3_A1

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: University of Fribourg


ncbi_organism_name: Ruminococcus callidus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bosea thiooxidans

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Croceibacterium xixiisoli

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Phormidium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Evtepia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Evtepia;x__unclassified Evtepia;s__Evtepia sp.


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: uncultured bacterium

ncbi_submitter: Lund University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: shandong university


ncbi_organism_name: Priestia megaterium

ncbi_submitter: faculty of agriculture, university of belgrade


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Arenicellales bacterium Ianthella basta O2

ncbi_isolate: Arenicellales bacterium IbO2

ncbi_organism_name: Arenicellales bacterium IbO2

ncbi_strain_identifiers: Arenicellales bacterium IbO2

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Verrucomicrobiales bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Achromobacter spanius


ncbi_country: Mali

ncbi_isolation_source: fermented cow milk

ncbi_organism_name: Weissella confusa

ncbi_submitter: Brigham Young University


ncbi_organism_name: Salmonella sp. M292

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Proteus cibi

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Candidatus Kaftiobacterium secundum

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Kaftiobacteriaceae;g__Candidatus Kaftiobacterium;s__Candidatus Kaftiobacterium secundum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Kaftiobacteriaceae;g__Candidatus Kaftiobacterium;s__Candidatus Kaftiobacterium secundum


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: sediment

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Salem Microbes Private Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: China: Hubei; Jinshan

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE12

ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: IL

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Serratia marcescens

ncbi_submitter: ONEOMICS PRIVATE LIMITED


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Prevotella nigrescens

ncbi_submitter: EMG


ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Thermotogaceae bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: Human saliva

ncbi_organism_name: Actinomyces sp. ICM47


ncbi_country: Brazil

ncbi_isolation_source: shoe cover farm worker

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Czech Republic

ncbi_organism_name: Escherichia coli

ncbi_submitter: CEITEC VFU


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: France: Barry-le-Cas

ncbi_organism_name: Pseudomonas moraviensis

ncbi_submitter: INRAE


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Chicago


ncbi_country: USA: University of California at Los Angeles

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ares Genetics GmbH


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Zhejiang

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_isolation_source: Freshwater lake

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Dongiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_country: USA: Florida; Summerland Key

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: Stony Brook University


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: China: Nanjing

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: China

ncbi_isolation_source: cow

ncbi_organism_name: Acinetobacter sp. A1

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Switzerland

ncbi_isolation_source: dryed meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: School of Allied Health Sciences


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_country: Australia: Davies Reef; Great Barrier Reef

ncbi_isolation_source: sponge tissue; low temperature; high CO2

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Australian Institute of Marine Science


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol


ncbi_country: China: Tibet

ncbi_isolation_source: Tibet kefir

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Beijing Technology and Business University


ncbi_country: Turkey

ncbi_organism_name: Pseudoclavibacter sp. RFBI5

ncbi_submitter: Oregon State University


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: EMG


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: unknown


ncbi_isolate: coral tank

ncbi_organism_name: Rubellicoccus peritrichatus

ncbi_strain_identifiers: coral tank;CR14

ncbi_submitter: Guangxi University


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Aequorivita sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Anaerolineales bacterium


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester - waste activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Shandong University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Norway

ncbi_isolation_source: environmental

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_country: USA: Los Angeles; California

ncbi_isolation_source: Human; fecal

ncbi_organism_name: Campylobacter upsaliensis RM3940

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: jejunum

ncbi_organism_name: Tidjanibacter sp.

ncbi_submitter: Quadram Institutte


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: University of Queensland


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: China: Jilin

ncbi_isolation_source: Rice flour product

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Desulfovibrio piger

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Aneurinibacillus thermoaerophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Gluconobacter oxydans DSM 3504

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Australia: Western Australia

ncbi_isolation_source: blood

ncbi_submitter: The University of Queensland


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-4704

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_isolation_source: marine

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: China: Beijing

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: China Agricultural University


ncbi_country: China: Xinjiang

ncbi_isolation_source: Gurbantunggut Desert

ncbi_organism_name: Mycobacterium deserti

ncbi_submitter: Institute of Medicinal Biotechnology Chinese Academy of Medical Sciences


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Monash University


ncbi_isolate: HCA1 bin26

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_strain_identifiers: HCA1 bin26


ncbi_country: China: Hangzhou

ncbi_isolation_source: activated sludge

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Zhejiang University of Technology


ncbi_country: Brazil: Sao Paulo

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Sao Paulo


ncbi_country: USA: Dallas; TX

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Broad Institute


ncbi_assembly_name: freshwater MAG --- Day6-4_bin-623

ncbi_organism_name: uncultured Methylococcaceae bacterium


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UNIVASF


ncbi_organism_name: Candidatus Poriferisodalaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_country: Chile: Santiago

ncbi_isolation_source: Tejido ingle

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_country: Belgium

ncbi_isolation_source: Environmental

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Schaedlerella sp.


ncbi_country: USA: Maunalua Bay; Oahu; Hawaii

ncbi_isolation_source: sand flats

ncbi_organism_name: Pseudoalteromonas sp. JC28

ncbi_submitter: University of Connecticut


ncbi_submitter: LHUB-ULB


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Gammaproteobacteria bacterium UBA7451

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Italian National Institute of Health


ncbi_country: USA: WA

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Aquimarina sp. EL_35

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: EMG


ncbi_organism_name: uncultured Candidatus Kuenenia sp.

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;x__environmental samples;s__uncultured Candidatus Kuenenia sp.


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_country: Greece: Ionian Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Alteromonas mediterranea

ncbi_submitter: University Miguel Hernandez


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D5_bin-0016

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Notoacmeibacter sp.

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Iowa State University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: School of Medicine


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Canada: Lake Hazen

ncbi_isolation_source: sediment

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Ottawa


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: Quadram Institutte


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: University of Turin


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus warneri

ncbi_strain_identifiers: acrmw

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Peribacillus castrilensis


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Shigella flexneri 2850-71

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Turicimonas muris

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Actinomyces graevenitzii

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eggerthella sp.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_submitter: BGI


ncbi_country: India: Near North Bay Island; Andaman Sea

ncbi_isolation_source: mucus

ncbi_organism_name: Salinicola acroporae

ncbi_submitter: Institute of Life Sciences


ncbi_organism_name: Bacillus sp. FSL L8-0637

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL L8-0637


ncbi_country: Canada: Waterloo

ncbi_isolation_source: water from a groundwater well adjacent to an active municipal landfill in Southern Ontario

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: Enterobacter cloacae complex sp. XAL002

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. XAL002


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Monash University


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Chaska; MN

ncbi_isolation_source: cucumber fermentation brine

ncbi_organism_name: Pediococcus ethanolidurans

ncbi_submitter: USDA-ARS


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: FDA


ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: The First Hospital of Jilin University


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate

ncbi_organism_name: Nitrobacter sp.

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Curitiba

ncbi_isolation_source: child feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia coli

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Vellozia epidendroides specimens

ncbi_organism_name: Silvibacterium sp.

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_assembly_name: IMG-taxon 2582580726 annotated assembly

ncbi_organism_name: Butyrivibrio hungatei DSM 14810

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: South Korea: Goesan

ncbi_isolation_source: leaf tissue

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: POSTECH


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Lactobacillus helveticus

ncbi_strain_identifiers: VHProbi Y21

ncbi_submitter: Nutrition &Health Technology Center


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: South China Sea

ncbi_isolation_source: Deep Seawater

ncbi_organism_name: Devosia marina

ncbi_submitter: Guangdong Academy of Sciences


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: India: Assam

ncbi_isolation_source: soil

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: CSIR-North East Institute of Science and Technology


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: University of Calgary


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Black Sea sulfidic water cellulose enrichment

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Royal Netherlands Institute for Sea Research


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Valencia


ncbi_country: China: Shandong

ncbi_isolation_source: intestine

ncbi_organism_name: Neiella marina

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Blautia faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: skin swab cheek

ncbi_organism_name: Corynebacterium bovis

ncbi_submitter: Aarhus University


ncbi_country: Kenya: Nairobi

ncbi_isolation_source: Enviromental

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_submitter: Food and Water Safety Consortium


ncbi_submitter: The First Affiliated Hospital of Shandong First Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Phascolarctobacterium faecium


ncbi_country: Netherlands

ncbi_strain_identifiers: STEC 627

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: Brazil

ncbi_strain_identifiers: IBSBF 2667

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas phaseoli;x__Xanthomonas phaseoli pv. manihotis;x__Xanthomonas phaseoli pv. manihotis str. IBSBF 2667


ncbi_country: USA: Octopus Spring; Yellowstone National Park; Wyoming

ncbi_isolation_source: alkaline siliceous hot spring microbial mat

ncbi_organism_name: Chloracidobacterium thermophilum

ncbi_strain_identifiers: B

ncbi_submitter: Tokyo Metropolitan University


ncbi_country: China:Huizhou City; Guangdong Province

ncbi_organism_name: Acinetobacter schindleri

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Tateyamaria sp. 1078


ncbi_country: Germany: Schilksee; Kiel Fjord; Baltic Sea; Latitude: 54.42470; Longitude: 10.17513

ncbi_isolation_source: Schilksee (Kiel Fjord / Baltic Sea)

ncbi_organism_name: Maribacter halichondriae

ncbi_submitter: GEOMAR Helmholtz Center for Ocean Research Kiel


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: BGI-Shenzhen


ncbi_country: Italy

ncbi_isolation_source: Roman amphora

ncbi_organism_name: Peribacillus sp. Aquil_B1

ncbi_submitter: University of Udine


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Ruthenibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acinetobacter haemolyticus

ncbi_submitter: Xiamen University


ncbi_organism_name: Streptomyces sp. NPDC092295

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Arsenophonus nasoniae

ncbi_submitter: University of Liverpool


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institut de Physique du Globe de Paris

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Salmonella sp. CQ22WZ0208SAL

ncbi_submitter: Wanzhou CDC


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Streptomyces sp. NPDC053495


ncbi_organism_name: uncultured Terriglobus sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: uncultured Prolixibacteraceae bacterium


ncbi_country: Atlantic Ocean: Bermuda Atlantic Time Series BATS

ncbi_isolation_source: seawater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Exeter


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Bacillus cereus

ncbi_submitter: South China Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG084

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_organism_name: Streptomyces cyaneofuscatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: GNS Science


ncbi_isolation_source: Proximal colon


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: California; Eel River; Elder Creek

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Romaine Lettuce

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: bacterium 210820-DFI.6.38

ncbi_submitter: University of Chicago


ncbi_country: USA:New York City

ncbi_isolation_source: culture


ncbi_country: New Zealand: Khandallah Park; Wellington

ncbi_isolation_source: lichen

ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: Victoria University of Wellington


ncbi_country: Bolivia: Cochabamba

ncbi_isolation_source: Catheter

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of the Basque Country UPV/EHU


ncbi_country: China: Taizhou

ncbi_isolation_source: wastewater

ncbi_organism_name: Acinetobacter bereziniae

ncbi_strain_identifiers: H

ncbi_submitter: Taizhou University


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacier surface soil

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Aarhus University


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: Biological soil crust from Avdat LTER; Negev Desert; Israel

ncbi_organism_name: uncultured Rubellimicrobium sp.

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides faecis

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Tangfeifania diversioriginum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: University of Georgia in Athens; GA

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; hindgut

ncbi_submitter: University of Georgia


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: HUN-REN Bilogical Research Centre


ncbi_country: France: Paris

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSERM


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Psychrobacter sp.

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Czech Republic: M. Boleslav

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii NIPH 1734

ncbi_strain_identifiers: NIPH 1734

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter baumannii;x__Acinetobacter baumannii NIPH 1734


ncbi_country: Namibia

ncbi_isolation_source: Namibian saline spring

ncbi_organism_name: Salinivibrio sp. SS3

ncbi_submitter: University of the Western Cape


ncbi_country: United Kingdom

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Atlantic Ocean

ncbi_isolation_source: water

ncbi_organism_name: Pseudoalteromonas sp. CST3

ncbi_submitter: Michigan Technological University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_assembly_name: Salmonella enterica CVM N47727 v1.0

ncbi_country: USA: NY

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: Tanzania

ncbi_submitter: IRHS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. phaseoli var. fuscans


ncbi_assembly_name: freshwater MAG --- KT3_bin-195

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Fujian Agriculture and Forestry Universit


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: USA: MN

ncbi_isolation_source: root

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Bangladesh

ncbi_organism_name: Escherichia coli P0304816.8

ncbi_submitter: IGS


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Lithuania

ncbi_isolation_source: chicken meat

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Lithuanian University of Health Sciences


ncbi_country: Canada: Roseau; MB

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Public Health Agency of Canada


ncbi_country: USA: PA

ncbi_isolation_source: ovine intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China

ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: China Agricultural University


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: Italy

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_isolation_source: soil

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;x__unclassified Candidatus Fermentibacterota;s__candidate division Hyd24-12 bacterium UBA7474


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Pseudomonas sp.


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Amaricoccus sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA

ncbi_organism_name: Francisella philomiragia

ncbi_submitter: Northern Arizona University


ncbi_country: China: Nanjing

ncbi_isolation_source: urethral discharge

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Institute of Dermatology, Chinese Academy of Medical Sciences and Peking Union Medical College


ncbi_country: USA: San Francisco Bay

ncbi_isolation_source: Perchlorate-reducing enrichment

ncbi_organism_name: Denitromonas halophila

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Slackia sp.

ncbi_submitter: EMG


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Pseudosulfitobacter pseudonitzschiae

ncbi_submitter: Shantou University


ncbi_country: China: Beijing

ncbi_isolation_source: patient

ncbi_submitter: Peking University Third Hospital


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Patient 04;Isolate 01

ncbi_submitter: University of Pittsburgh


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: sea water

ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Ghana

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Copenhagen


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Pedobacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: Chlamydia psittaci UGA

ncbi_strain_identifiers: UGA

ncbi_submitter: cdc

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;x__Chlamydia/Chlamydophila group;g__Chlamydia;s__Chlamydia psittaci;x__Chlamydia psittaci UGA


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Coprococcus comes

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: United Kingdom: South East

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: UK Health Security Agency


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: China Agricultural University


ncbi_country: Thailand: Lamphun

ncbi_isolation_source: Rectal swab

ncbi_submitter: JCVI


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Draconibacterium sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_organism_name: Helicobacter pylori 8A3

ncbi_submitter: MHH Hannover Medical School


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Streptomyces chartreusis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Russia: Moscow

ncbi_isolation_source: soil

ncbi_organism_name: Gordonia sp. 135

ncbi_submitter: IBPM RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. 135


ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: uncultured Balneola sp.

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;g__Balneola;x__environmental samples;s__uncultured Balneola sp.


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDX8P69P

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: Kutzneria albida DSM 43870

ncbi_submitter: Helmholtz Institute for Pharmaceutical Research Saarland, Helmholtz Centre for Infection Research


ncbi_assembly_name: Escherichia coli CVM N33574PS v1.0

ncbi_isolation_source: Farm

ncbi_strain_identifiers: CVM N33574PS

ncbi_submitter: FDA


ncbi_organism_name: Thauera sp.

ncbi_submitter: Technische Universiteit Delft


ncbi_organism_name: Bradyrhizobium sp. SZCCHNF30212

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: Stellenbosch University


ncbi_organism_name: uncultured Vampirovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Serratia bockelmannii


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Lactobacillus crispatus


ncbi_country: China: GuangZhou

ncbi_isolation_source: sputum

ncbi_organism_name: Proteus mirabilis


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1274

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Ares Genetics


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: India: Vellore

ncbi_organism_name: Vibrio cholerae O139

ncbi_submitter: Christian Medical College


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: China:Xi an

ncbi_isolation_source: Meridian Valley soil sampled at Qinling Mountains; an area in Shaanxi Province located in PR China.

ncbi_organism_name: Streptomyces changanensis

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Streptomyces sp. NBC_00691

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Post Graduate Institute of Medical Education and Research, Chandigarh


ncbi_country: Australia: Australian Institute of Marine Science

ncbi_isolation_source: seawater

ncbi_organism_name: Ahrensia sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: Italy: Florence

ncbi_isolation_source: pharyngeal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_country: Brazil:Rio Grande do Sul

ncbi_organism_name: Brucella abortus

ncbi_submitter: Universidade Federal de Lavras


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Utah

ncbi_isolation_source: Great Salt Lake

ncbi_organism_name: Halomonas sp. SL1

ncbi_submitter: University of Massachusetts Dartmouth


ncbi_country: USA: Minnesota

ncbi_isolation_source: RML bronchus

ncbi_organism_name: Haemophilus paraphrohaemolyticus

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Luteimonas sp. TWI1437

ncbi_submitter: University of Technology Sydney


ncbi_country: Ireland

ncbi_isolation_source: cheese

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University College Cork


ncbi_submitter: University hospital Lubeck


ncbi_country: United Kingdom: London

ncbi_isolation_source: Screening

ncbi_organism_name: Escherichia coli

ncbi_submitter: UK Health Security Agency


ncbi_country: China: Zhejiang

ncbi_isolation_source: caecum

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: China: Weihai

ncbi_isolation_source: sediments from coastal area

ncbi_organism_name: Mariniphaga sediminis

ncbi_submitter: shandong university


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Japan

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Uliginosibacterium flavum

ncbi_submitter: Seoul Womens' University


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Halomonas denitrificans

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_organism_name: Acinetobacter baumannii TG27387

ncbi_submitter: Translational Genomics Research Institute


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA

ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Methylobacter sp.

ncbi_submitter: University of Waterloo


ncbi_assembly_name: Rumen uncultured genome RUG13253

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_assembly_name: IMG-taxon 2585428192 annotated assembly

ncbi_organism_name: Hymenobacter psychrotolerans DSM 18569

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter;s__Hymenobacter psychrotolerans;x__Hymenobacter psychrotolerans DSM 18569


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: EMG


ncbi_country: Qatar: Doha

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sidra Medicine


ncbi_country: China: Yangpu Bay; Hainan

ncbi_organism_name: Altericroceibacterium spongiae

ncbi_submitter: Xiamen Medical College


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_organism_name: Streptomyces sp. NPDC048623

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_submitter: NARO Institute of Fruit Tree Science (NIFTS), National Agriculture and Food Research Organization (NARO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas arboricola;x__Xanthomonas arboricola pv. pruni;x__Xanthomonas arboricola pv. pruni str. MAFF 311562


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy

ncbi_isolation_source: salami

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_submitter: King Abdulaziz University


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_isolate: Alteromonas macleodii EZ55

ncbi_organism_name: Alteromonas macleodii

ncbi_strain_identifiers: Alteromonas macleodii EZ55

ncbi_submitter: Institute for Chemistry and Biology of the Marine Environment


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_country: Canada

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: South Korea

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: Lentilactobacillus hilgardii

ncbi_submitter: Consiglio per la ricerca in agricoltura e l'analisi dell'economia agraria (CREA)


ncbi_organism_name: Streptomyces platensis


ncbi_country: Belgium: Aarsele

ncbi_isolation_source: plant

ncbi_organism_name: Pseudomonas coronafaciens pv. porri

ncbi_submitter: Institute for Agricultural and Fisheries Research (ILVO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. porri


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: EMG


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0852

ncbi_submitter: Broad Institute


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: India: Bengal

ncbi_isolation_source: Diarrhea

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: uncultured Ardenticatenaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Rhizobacter sp.

ncbi_submitter: Spribille Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__environmental samples;s__uncultured Rhizobacter sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Ningxia University


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: uncultured Opitutaceae bacterium


ncbi_organism_name: uncultured Solibacteraceae bacterium


ncbi_organism_name: Brevundimonas sp. NPDC028983

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Alistipes senegalensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Ehrlichia muris subsp. eauclairensis

ncbi_strain_identifiers: Wisconsin

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;g__Ehrlichia;x__canis group;s__Ehrlichia muris;sb__Ehrlichia muris subsp. eauclairensis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for Clinical Pathology and Medical Research


ncbi_organism_name: uncultured Ruminiclostridium sp.


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Elusimicrobiaceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institute of Chemistry, National Autonomous University of Mexico (UNAM)


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: University of Veterinary Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Roseburia faecis

ncbi_submitter: UIUC


ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_submitter: ICDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Mississippi State University; College of Veterinary Medicine


ncbi_organism_name: Psychroserpens sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Utah


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: Nanjing Agricultural University


ncbi_country: India: Gulf of Kutch

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Candidatus Avigastranaerophilus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;g__Candidatus Avigastranaerophilus;x__unclassified Candidatus Avigastranaerophilus;s__Candidatus Avigastranaerophilus sp.


ncbi_submitter: Faculty of Veterinary Medicine, Ankara University (FVMAU)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: Canada: Lacombe

ncbi_organism_name: Mollicutes bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Southern Federal University


ncbi_organism_name: Enterobacter sp. SAT-E-asb

ncbi_strain_identifiers: SAT-E-asb

ncbi_submitter: aphp


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington State University


ncbi_organism_name: uncultured Paenibacillaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Mesorhizobium australicum


ncbi_country: Indonesia: West Timor

ncbi_isolation_source: soil under mahogany trees

ncbi_organism_name: Dietzia timorensis

ncbi_submitter: Peking University


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Environmental Microbiology OMICS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: Japan: Kanita-machi; Aomori Pref.

ncbi_organism_name: Pseudomonas coronafaciens pv. oryzae

ncbi_strain_identifiers: ICMP 9093

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. oryzae


ncbi_isolation_source: Food production environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University College Cork


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Enterobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Ginsengibacter sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Cleaned poultry house

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Vermont

ncbi_isolation_source: Cheese rind

ncbi_organism_name: Glutamicibacter arilaitensis

ncbi_submitter: Dutton Lab, UCSD


ncbi_country: Honduras

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: France

ncbi_organism_name: Coxiella burnetii

ncbi_submitter: IHU mediterranee infection


ncbi_organism_name: Campylobacter sp. 1569

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01039

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01039


ncbi_country: USA: North Carolina

ncbi_isolation_source: urine

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: biogas slurry

ncbi_organism_name: Advenella alkanexedens

ncbi_submitter: YUNNAN UNIVERSITY


ncbi_organism_name: Campylobacter fetus subsp. testudinum

ncbi_submitter: Guangzhou University of Chinese Medicine


ncbi_country: Australia: Queensland

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Menzies School of Health Research


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Germany

ncbi_isolation_source: flour/flour products

ncbi_organism_name: Escherichia coli


ncbi_country: Malawi: Lilongwe

ncbi_submitter: NORHED grant


ncbi_organism_name: Kitasatospora aureofaciens

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Jefferson

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: NCTR/FDA


ncbi_country: Brazil

ncbi_isolation_source: biological fluid or tissue

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: USA: California; UC Berkeley Botanical Gardens

ncbi_isolation_source: UC Berkeley Botanical Gardens

ncbi_organism_name: Pseudomonas poae

ncbi_submitter: UC Berkeley