ncbi_organism_name: Salinisphaera sp. SPP-AMP-43

ncbi_submitter: CSIR-IMTECH


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Contig

ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: The University of Queensland


gtdb_representative: t

ncbi_assembly_level: Complete Genome

ncbi_isolation_source: Water

ncbi_organism_name: Vibrio gazogenes

ncbi_submitter: University of South carolina


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: Finland: Helsinki

ncbi_isolation_source: Marinated pork

ncbi_organism_name: Leuconostoc gasicomitatum

ncbi_submitter: University of Helsinki


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: forestomach

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: University of Alberta


ncbi_country: Russia: Rostov-na-Donu

ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium amycolatum

ncbi_submitter: SRCAMB


ncbi_organism_name: Pseudomonas sp. Z13

ncbi_submitter: University of Warsaw, Faculty of Biology, Institute of Microbiology


ncbi_country: Kazakhstan: Karaganda

ncbi_isolation_source: suspension

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: National Center for Biotechnology


ncbi_country: Antarctica: Mackay Glacier regions; Mount George Murray

ncbi_isolation_source: mineral soil

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: Monash University


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Rutgers University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Tsinghua University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Segatella copri

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Institut Pasteur of Madagascar


ncbi_organism_name: Lactobacillus iners

ncbi_submitter: MIT


ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"


ncbi_organism_name: Usitatibacteraceae bacterium


ncbi_organism_name: Dyella lipolytica

ncbi_submitter: SUN YAT-SEN UNIVERSITY

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: uncultured Francisella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangnan University


ncbi_organism_name: Haemophilus sp.


ncbi_organism_name: Aeromicrobium sp. LTX1

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Georgia Tech


ncbi_organism_name: Pandoraea pneumonica

ncbi_submitter: Hainan General Hospital


ncbi_organism_name: Streptomyces griseus

ncbi_submitter: Instituto Politecnico Nacional


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium


ncbi_country: China: Yinshan Lead-Zinc Mine; Jiangxi Province

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Brazil: Belem


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Acidobacteria bacterium UBA2990

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__unclassified Acidobacteriota;s__Acidobacteria bacterium UBA2990


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: sea water

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: China: Chifeng

ncbi_organism_name: Vibrio metschnikovii

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Staphylococcus aureus A5948

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacteroides fragilis


ncbi_country: USA

ncbi_isolation_source: surface swab

ncbi_organism_name: Stenotrophomonas sp. GD04054

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Durham; NC

ncbi_isolation_source: catheterized bladder urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Alabama in Huntsville


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Fusobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China

ncbi_isolation_source: Qinghai Lake sediment

ncbi_organism_name: Sphingomonas sp. LaA6.9

ncbi_submitter: Zhejiang University


ncbi_organism_name: Planctomycetota bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: Lane County; Oregon

ncbi_organism_name: Rathayibacter rathayi

ncbi_submitter: Oregon State University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0035


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: South China Agricultural University


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ammonia-oxidizing enrichment culture

ncbi_organism_name: bacterium HR16

ncbi_submitter: Japan Agency for Marine-Earth Science and Technology


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Izemoplasma sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;f__Candidatus Izemoplasmataceae;g__Candidatus Izemoplasma;x__unclassified Candidatus Izemoplasma;s__Candidatus Izemoplasma sp.


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: United Kingdom: London

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Imperial College London


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_assembly_name: freshwater MAG --- KTt_bin-1219

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: uncultured Bacilli bacterium


ncbi_country: USA: NY

ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus DAR1938

ncbi_submitter: Broad Institute


ncbi_organism_name: Staphylococcus aureus M0353


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Corynebacterium kroppenstedtii

ncbi_submitter: US Food and Drug Administration


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: Wound Secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_isolation_source: pig farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_assembly_level: Chromosome

ncbi_country: Thailand: Nakhon Ratchasima

ncbi_isolation_source: Rectal Swab

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: Campylobacter molothri

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Lithuanian University of Health Sciences


ncbi_submitter: University of Texas at Austin


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Mageeibacillus sp. UBA5436

ncbi_submitter: University of Queensland


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: Streptococcus salivarius


ncbi_country: China: Guizhou; Longli

ncbi_organism_name: Acidiferrobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Human gut stool

ncbi_organism_name: Clostridiales bacterium


ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_assembly_name: Rumen uncultured genome RUG11864

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Australia: Melbourne

ncbi_isolation_source: seeds

ncbi_organism_name: Sphingomonas sp. GC_Shp_2

ncbi_submitter: Agriculture Victoria


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Leyella stercorea

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Connecticut; Hamden

ncbi_isolation_source: flower stigma

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Connecticut Agricultural Experiment Station


ncbi_organism_name: Legionella lansingensis

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou university


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: North Dakota

ncbi_organism_name: Xanthomonas translucens

ncbi_submitter: Kansas State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


gtdb_type_species_of_genus: t

ncbi_organism_name: Echinicola pacifica

ncbi_refseq_category: reference genome

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Fictibacillus sp. KU28468

ncbi_submitter: Korea University


ncbi_country: Norway

ncbi_isolation_source: arctic soil

ncbi_organism_name: Flavisphingopyxis soli

ncbi_submitter: Guangdong Academy of Sciences


ncbi_submitter: Swiss Institute of Bioinformatics - Vital-IT group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus ST228


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Mobiluncus mulieris

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: USA

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mutans B082SM-A

ncbi_submitter: New York University College of Dentistry


ncbi_country: USA: Sedona; AZ; Red Rock State Park

ncbi_isolation_source: Clay Soil

ncbi_organism_name: Bacillus sp. AZ43

ncbi_submitter: University of New Hampshire

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AZ43


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Ghana

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Luebeck


ncbi_country: USA: IA

ncbi_organism_name: Bacillus sp. AFS018417

ncbi_submitter: UNC Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AFS018417


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: Netherlands: Leiden

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Leiden University


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Labilithrix sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zhejiang Provincial People's Hospital, People's Hospital of Hangzhou Medical College


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: Centre International de Recherche en Infectiologie


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: USA: New York City

ncbi_isolation_source: skin

ncbi_organism_name: Corynebacterium bovis

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: Brazil

ncbi_organism_name: Escherichia coli RN587/1

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Lachnoanaerobaculum sp.

ncbi_submitter: EMG


ncbi_country: Colombia: Antioquia; Bello

ncbi_isolation_source: Secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Antioquia


ncbi_organism_name: Terriglobus sp. TAA 43

ncbi_strain_identifiers: TAA 43

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_isolation_source: Urinary Tract

ncbi_organism_name: Corynebacterium sp. HMSC29G08

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: New Zealand: Te Puke; Bay of Plenty

ncbi_submitter: The New Zealand Institute for Plant & Food Research Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae;x__Pseudomonas syringae pv. actinidiae ICMP 19095


ncbi_isolation_source: blood and spinal fluid

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Chiba University


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: Chesapeake Bay

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Clemson University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Lysinibacillus pakistanensis

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_isolation_source: Wastewater influent sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The REHAB Consortium


ncbi_country: Egypt

ncbi_isolation_source: carcass

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human gut

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: USA: Auburn; Alabama

ncbi_isolation_source: skin biopsy

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Auburn University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Beijing; Haidian

ncbi_isolation_source: wastewater day 144 in APNA reactor

ncbi_organism_name: Thauera sp.

ncbi_submitter: Peking University


ncbi_country: China: Sichuan

ncbi_submitter: China Aricultural University


ncbi_country: Russia: Altay Territory

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_submitter: Irkutsk Antiplague Research Institute of Rospotrebnadzor

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: Pondicherry University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Norddeutsches Zentrum für Mikrobielle Genomforschung


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: United Kingdom Health Security Agency


ncbi_country: Australia: Coast of Sydney

ncbi_isolation_source: sea water

ncbi_organism_name: Alteromonas sp. BL110

ncbi_submitter: University of New South Wales


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Stahliibacteriota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Stahliibacteriota;x__unclassified Candidatus Stahliibacteriota;s__Candidatus Stahliibacteriota bacterium


ncbi_isolation_source: not known

ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: rhizosphere

ncbi_organism_name: Heyndrickxia coagulans

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Vibrio splendidus

ncbi_submitter: University of Vienna


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; solid retention time of 6 days

ncbi_organism_name: Acetobacter fabarum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: Soil

ncbi_organism_name: Streptomyces sp. CCM_MD2014

ncbi_submitter: Auburn University


ncbi_country: China: Hangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: Sierra Leone: Tacugama Chimpanzee Sanctuary

ncbi_isolation_source: brain

ncbi_organism_name: Candidatus Sarcina troglodytae

ncbi_submitter: Leidos


ncbi_isolation_source: not provided

ncbi_organism_name: Rothia dentocariosa


ncbi_isolation_source: lake water

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: University of Zurich


ncbi_organism_name: Bacteroides sp. CAG:770


ncbi_country: Lithuania

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: USA: CA

ncbi_isolation_source: human sample

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: EPFL/Melanie Blokesch


ncbi_country: Kenya: Kajiado County

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridium saudiense

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Terrabacter lapilli

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: Faeces


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Butyricicoccus sp. OF27-2pH9A

ncbi_submitter: BGI-Shenzhen


ncbi_country: China

ncbi_isolation_source: glacier ice

ncbi_organism_name: Cryobacterium melibiosiphilum

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Deinococcus radiomollis

ncbi_submitter: University of Waikato


ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: Nanjing University


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of Pharmacy Mahidol University


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_country: Antarctica: Ardley Cove; Maxwell Bay; Fildes Peninsula

ncbi_isolation_source: ocular surface sample

ncbi_organism_name: Corynebacterium sp. TAE3-ERU2

ncbi_submitter: Erciyes University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Thailand

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Australia: south australia

ncbi_isolation_source: desert

ncbi_organism_name: Izhakiella australiensis

ncbi_submitter: the University of NSW


ncbi_country: China: Hubei province

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: the Colloge Of Fishers


ncbi_organism_name: Janthinobacterium sp. P210006

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_assembly_name: IMG-taxon 2663763599 annotated assembly

ncbi_organism_name: Halopseudomonas pachastrellae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Australia: Five Islands

ncbi_organism_name: Escherichia coli

ncbi_submitter: OUTBREAK


ncbi_organism_name: Rhodocyclaceae bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: France: Nantes

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: The University Hong Kong


ncbi_submitter: Zhejiang university


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: USA

ncbi_isolation_source: Respiratory

ncbi_strain_identifiers: MSSA


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Roseburia faecis


ncbi_organism_name: Eikenella halliae


ncbi_organism_name: Nitrobacter sp.

ncbi_submitter: the University of Queensland


ncbi_organism_name: Alistipes finegoldii


ncbi_isolate: AOP5_LA_FY1 _bin _1

ncbi_organism_name: Cellulosimicrobium funkei

ncbi_strain_identifiers: AOP5_LA_FY1 _bin _1

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Niastella sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mariprofundaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Forsyth Institute


ncbi_organism_name: Nocardiopsis sp. NPDC006938

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp. WSLK1-5

ncbi_submitter: Kasetsart University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Geminicoccaceae bacterium


ncbi_organism_name: Gemmiger qucibialis


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Corynebacterium variabile

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: University of Zurich


ncbi_isolate: SPRUCE 489

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_strain_identifiers: SPRUCE 489

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Paraburkholderia graminis

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Alteromonadaceae bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatus Muproteobacteria;s__Candidatus Muproteobacteria bacterium RIFCSPLOWO2_01_FULL_60_18


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: CEBITEC


ncbi_organism_name: Streptococcus pneumoniae G54

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: uncultured Anaerobiospirillum sp.


ncbi_country: Chile

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: Faeces


ncbi_country: USA: International Space Station

ncbi_isolation_source: Aluminum 2

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Western University


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_isolation_source: sediment

ncbi_organism_name: Ktedonobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Fuzhou center for disease control and prevention


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: bay water summer D sample 29 PSU in greater than .8 micron size fraction

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Clemson University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: University of Calgary


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: University of Alberta


ncbi_organism_name: Streptococcus alactolyticus

ncbi_submitter: University of Manitoba


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: USA: MD

ncbi_isolation_source: feces

ncbi_organism_name: Shigella boydii

ncbi_strain_identifiers: DMB SH20248

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: diffuse vent DFF1

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_country: China: Tengchong

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Collinsella bouchesdurhonensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: East China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Capnocytophaga sputigena

ncbi_submitter: EMG


ncbi_country: Cameroon

ncbi_isolation_source: rice

ncbi_organism_name: Pseudomonas palleroniana

ncbi_submitter: University of Gothenburg - CCUG


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: FIOCRUZ


ncbi_country: USA: MI

ncbi_organism_name: Escherichia coli HM46

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: FL

ncbi_isolation_source: calf feces

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: University of Florida


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Henan Agricultural University


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_country: USA: Lechuguilla Cave; New Mexico

ncbi_isolation_source: cave surface layer

ncbi_organism_name: Massilia sp. LC238

ncbi_submitter: Monash University Malaysia


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Sapienza University of Rome


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Sandia National Laboratories


ncbi_country: China: Jiangsu

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: India: Assam; Guwahati

ncbi_isolation_source: nasal swab

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Guangdong provincial center for disease control and prevention


ncbi_country: Canada: Alberta

ncbi_submitter: Agriculture & Agri-Food Canada


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Leisingera daeponensis

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: IMG-taxon 2593339138 annotated assembly

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_submitter: Aga Khan University, Nairobi


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Veillonella sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Phormidesmidales cyanobacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Halobacteriovoraceae bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Solirubrobacteraceae bacterium


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG007

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Durham; NC

ncbi_isolation_source: Lt groin wound

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Alabama in Huntsville


ncbi_organism_name: uncultured Caulobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Coprococcus eutactus


ncbi_country: USA: Pacific Coast

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Eubacteriaceae bacterium


ncbi_country: USA: BIFSCo Region 7

ncbi_isolation_source: stool

ncbi_submitter: USDA-ARS-USMARC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo;x__Salmonella enterica subsp. enterica serovar Montevideo str. CDC 2011K-1674


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_isolation_source: cold seep

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: Sour milk

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_strain_identifiers: KCTC 3034

ncbi_submitter: Korea University


ncbi_isolation_source: Ocean cavity beneath Ross Ice Shelf

ncbi_organism_name: uncultured Candidatus Thioglobus sp.

ncbi_submitter: UNIVERSITY OF VIENNA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__environmental samples;s__uncultured Candidatus Thioglobus sp.


ncbi_organism_name: Thermohalobaculum sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_organism_name: uncultured bacterium


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli 7-233-03_S3_C2

ncbi_submitter: IGS


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Spain

ncbi_isolation_source: gut

ncbi_organism_name: Klebsiella quasivariicola

ncbi_submitter: Hospital Ramon y Cajal


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Poultry Farm

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_country: Ukraine: eastern Crimea

ncbi_isolation_source: bubbling pool in the central crater-like structure of an active mud volcano

ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Salinibacter ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Clostridium sp. CM74B_53

ncbi_submitter: University of Trento


ncbi_country: Colombia: Medellin

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_country: Sweden

ncbi_organism_name: Escherichia coli

ncbi_submitter: Uppsala University


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Singapore


ncbi_isolation_source: hyacinth bulb; scale leaves

ncbi_organism_name: Serratia rubidaea

ncbi_submitter: University of Gdansk, Intercollegiate Faculty of Biotechnology


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_country: Brazil: Sao Paulo; Ribeirao Preto

ncbi_isolation_source: Tracheal Secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ribeirao Preto Medical School - USP


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B402;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Denmark: Ribe

ncbi_isolation_source: activated sludge from Ribe_18-Q3-R11-54

ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: Australia: Victoria

ncbi_isolation_source: dairy farm

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Northumbria University


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Acidimicrobiales bacterium


ncbi_organism_name: Klebsiella sp. CN_Kp091

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Eubacterium faecigallinarum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_isolation_source: Environment

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell' Abruzzo e del Molise


ncbi_submitter: The Italian National Institute of Health


ncbi_organism_name: Segatella copri

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: NHGRI/NIH


ncbi_country: USA: Oklahoma

ncbi_isolation_source: produced fluids from hydraulically fractured shales

ncbi_organism_name: Fusobacteriales bacterium

ncbi_submitter: The Ohio State University


ncbi_country: China: Chifeng

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_organism_name: Thiolinea sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Weissella koreensis

ncbi_submitter: Dongduk Women's University


ncbi_organism_name: Defluviitoga tunisiensis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad de Chile


ncbi_organism_name: Providencia stuartii

ncbi_submitter: University of Georgia


ncbi_organism_name: Parasutterella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Israel: Negev Desert

ncbi_isolate: NEG bin11

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: NEG bin11

ncbi_submitter: Monash University


ncbi_country: China

ncbi_isolation_source: rectal swab

ncbi_organism_name: Acinetobacter pseudolwoffii

ncbi_submitter: City University of Hong Kong


ncbi_country: Germany

ncbi_isolation_source: Mussels

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 6 / F; 5m depth; 0.2 filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division CPR3;s__candidate division CPR3 bacterium GWF2_35_18


ncbi_country: Argentina

ncbi_isolation_source: Screening

ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: UTHealth School of Public Health


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Medicines Directorate


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Blastococcus sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Helicobacter canadensis

ncbi_submitter: University of Antwerp, Belgium


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Porphyromonas crevioricanis

ncbi_submitter: UC Davis


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacial surface ice

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Aarhus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 211

ncbi_organism_name: Staphylococcus gallinarum

ncbi_strain_identifiers: SNUC 1046

ncbi_submitter: University of Calgary


ncbi_country: Russia: Shulgan-Tash cave; Bashkiria

ncbi_isolation_source: cave ground

ncbi_organism_name: Polaromonas sp. P1(28)-13

ncbi_submitter: ARRIAM


ncbi_assembly_name: Rumen uncultured genome RUG063

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Denmark: Aalborg E

ncbi_isolation_source: activated sludge from AalE_18-Q3-R2-46

ncbi_organism_name: Draconibacterium sp.

ncbi_submitter: Aalborg University


ncbi_organism_name: Moraxellaceae bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: Streptomyces sp. TP-A0874

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_country: China: Shenzhen

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital of Southern University of Science and Technology


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Altererythrobacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Slovenia

ncbi_isolation_source: blood

ncbi_organism_name: Bacillus cereus

ncbi_submitter: DGA CBRN Defence Center


ncbi_country: France

ncbi_isolation_source: cheese rind

ncbi_organism_name: Brachybacterium sp. FME24

ncbi_submitter: INRA


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium


ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Rhodoglobus sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: South Africa

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: Institute of Environmental Science and Research (ESR)


ncbi_organism_name: Butyricicoccaceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: China: Zhejiang

ncbi_isolation_source: sputum

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: Norway

ncbi_isolation_source: Laboratory

ncbi_submitter: UiT The Arctic University of Norway


ncbi_submitter: City University of Hong Kong


ncbi_country: Belgium: Walenbos forest; Tielt-Winge

ncbi_isolation_source: Offspring from female W744 and male W776

ncbi_organism_name: Candidatus Rhabdochlamydia oedothoracis

ncbi_submitter: Centre for Microbiology and Environmental Systems Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Parachlamydiales;f__Candidatus Rhabdochlamydiaceae;g__Candidatus Rhabdochlamydia;s__Candidatus Rhabdochlamydia oedothoracis


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: USA: Damariscotta River in front of the Bigelow Laboratory for Ocean Sciences

ncbi_isolation_source: four week timepoint of microcosm treated with crude oil after inoculation with natural surface seawater; biological replicate 1

ncbi_organism_name: Litorivicinaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus sp. HMSC035D11

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Firmicutes bacterium UBA3926

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA3926


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: Chung-Ang university


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Levilactobacillus brevis

ncbi_strain_identifiers: CRAI

ncbi_submitter: university of bologna


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Bielefeld University


ncbi_organism_name: Peribacillus castrilensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Blastomonas aquatica

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Halarcobacter sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Helicobacteraceae bacterium

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Parasutterella excrementihominis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_assembly_name: freshwater MAG --- Umea3p4_bin-0738

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Denmark: Ejby Molle

ncbi_isolation_source: activated sludge from Ejby_18-Q3-R6-50

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Aalborg University


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC087212

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Bradyrhizobium sp. GCM10027635

ncbi_strain_identifiers: WYCCWR 13022


ncbi_organism_name: uncultured Thermoleophilaceae bacterium


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Lund University


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: Food

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. SA20093538


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Stanford University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Kenya

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Bangladesh: Dhaka

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_country: Spain: Madrid

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_isolation_source: Faeces

ncbi_organism_name: Escherichia coli


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China: Sichuan

ncbi_submitter: China Agricultural University


ncbi_submitter: Penn State


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Chicago


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: New York state

ncbi_isolation_source: stool/fecal sample

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Panama: Bocas del Toro; STRI Point

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Stony Brook University


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Sakhalin; Daginskiye Thermal Springs

ncbi_isolation_source: enrichment culture from terrestrial mud volcano

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; >63 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Mexico

ncbi_isolation_source: Seawater

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: CIAD-Mazatlan


ncbi_country: USA: Louisiana

ncbi_isolation_source: Sugarcane mill mud

ncbi_submitter: Wells College


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_submitter: University of Calgary


ncbi_country: Switzerland

ncbi_isolation_source: lamb

ncbi_organism_name: Clostridium gasigenes

ncbi_submitter: University of Zurich


ncbi_country: Peru

ncbi_isolation_source: Clinic

ncbi_submitter: Instituto Nacional de Salud - Lima

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Ghent University


ncbi_organism_name: Negativicoccus succinicivorans

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Rice field soil

ncbi_organism_name: Burkholderia thailandensis

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_isolation_source: lake water

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Streptococcus gallolyticus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: South Korea:Changwon

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_country: USA: IA

ncbi_isolation_source: root

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: bronchial lavage sample

ncbi_organism_name: Mycolicibacterium monacense DSM 44395

ncbi_submitter: Uppasala Univeristy & Jawaharlal Nehru University


ncbi_country: China: Guizhou

ncbi_isolation_source: karst cave soil

ncbi_organism_name: Nocardia aurea

ncbi_strain_identifiers: SYSU K10002

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Chlamydiales bacterium

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Australia: Coral Sea

ncbi_isolation_source: mussel

ncbi_organism_name: Vibrio galatheae

ncbi_submitter: Technical University of Denmark


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater under a natural surface slick

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malaysia

ncbi_isolation_source: closed biodigester

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;s__Candidatus Shapirobacteria bacterium UBA1420


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Australia

ncbi_isolation_source: Environmental dairy

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: CSIRO


ncbi_organism_name: Phytobacter ursingii

ncbi_submitter: Unidad de Genomica y Bioinformatica


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_submitter: Quadram Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides choladohippi


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Germany: Freising

ncbi_isolation_source: feces

ncbi_organism_name: Tissierella pigra

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_country: Poland: Gorsk

ncbi_isolation_source: rape rhizosphere

ncbi_organism_name: Microbacterium sp. B19(2022)

ncbi_submitter: Nicolaus Copernicus University in Torun


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Brachybacterium sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Prescottella equi

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Stool

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Chitinophagia bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Caecum


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Australia: Bendigo; Victoria

ncbi_isolation_source: activated sludge plant

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter tandoii;x__Acinetobacter tandoii DSM 14970 = CIP 107469


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: Universidad Nacional de La Plata


ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Haiti

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae HC-41A1

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: soil

ncbi_organism_name: Caballeronia terrestris

ncbi_submitter: LM-UGent


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: Cornell University


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institut Pasteur


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDB20D107P

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: metagenome

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: addis ababa university


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_organism_name: Otoolea sp.

ncbi_submitter: Wilmar International Limited


ncbi_country: Russia: Karabetova Gora near the city of Taman

ncbi_isolation_source: sediment and water from a salsa lake of a terrestrial mud volcano

ncbi_organism_name: Candidatus Brevefilum sp.

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Anaerolineaceae;g__Candidatus Brevifilum;x__unclassified Candidatus Brevefilum;s__Candidatus Brevefilum sp.


ncbi_country: India:Cochin; Cheroy Beach Market

ncbi_isolation_source: shrimp

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolate: metabat2_XCR1_HOM_7853_bwa.138 MAG

ncbi_organism_name: Candidatus Ruminococcus avistercoris

ncbi_strain_identifiers: metabat2_XCR1_HOM_7853_bwa.138 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Clostridium peptidivorans

ncbi_submitter: TEAGASC


ncbi_country: USA: California; Los Angeles County

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Nitrobacter sp.

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago


ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: China: Inner Mongolia

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Department of Laboratory Medicine


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroides acidifaciens


ncbi_country: USA: Hawaii; Kaneohe Bay

ncbi_organism_name: Pseudoalteromonas piscicida

ncbi_submitter: Southern Oregon University


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Aquabacterium sp.

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__unclassified Aquabacterium;s__Aquabacterium sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Ileo-caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Chelsea; ME

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Broad Institute


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: burned soil

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-4728

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;x__environmental samples;s__uncultured candidate division WWE3 bacterium


ncbi_country: China

ncbi_isolation_source: catheter

ncbi_organism_name: Klebsiella michiganensis

ncbi_strain_identifiers: fxq

ncbi_submitter: Henan Cancer Hospital


ncbi_country: South Korea: Suwon region

ncbi_organism_name: Roseomonas aerilata DSM 19363

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Beijing

ncbi_isolation_source: animal manure

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Chinese Academy of Science


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: Rumen uncultured genome RUG11046

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Candidatus Avelusimicrobium intestinale

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Helmholtz Centre for Infection Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_country: China: Anhui

ncbi_isolation_source: meat

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_submitter: Shandong University


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: Other

ncbi_strain_identifiers: MRSA


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Acetobacter oeni

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_isolation_source: host s whole body

ncbi_organism_name: Wolbachia endosymbiont of Cardiocondyla obscurior

ncbi_submitter: Centre de Biologie pour la Gestion des Populations (CBGP - UMR1062)


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Desulfopila aestuarii DSM 18488

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Xenococcaceae cyanobacterium MO_234.B1

ncbi_submitter: Scripps Institution of Oceanography


ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Antarctica: Horseshoe Island

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces antarcticus

ncbi_submitter: Ondokuz Mayis University


ncbi_assembly_name: freshwater MAG --- KTt_bin-1539

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Enterococcus avium

ncbi_submitter: University of Parma


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Chromatiaceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Ontario Veterinary College, University of Guelph


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli

ncbi_submitter: Loyola University Chicago


ncbi_submitter: Universidade de Sao Paulo


ncbi_isolation_source: Chicken Wing

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Infantis

ncbi_submitter: University of California at Davis


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Konkuk University


ncbi_country: Canada: British Columbia

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Slackia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Citrobacter cronae

ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas monteilii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Ammonium sulfate bioreactor

ncbi_organism_name: Spirosoma sp. 48-14

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Longimicrobiaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: EMG


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: Clemson University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


ncbi_organism_name: Mycoplasma sp. Z331B

ncbi_submitter: Institute of Microbiology


ncbi_isolation_source: lake water

ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Ruminococcus sp. UBA7477

ncbi_submitter: University of Queensland


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Sweden: Orebro

ncbi_isolation_source: periprosthetic tissue

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_organism_name: uncultured Spirochaeta sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Sutterellaceae bacterium


ncbi_organism_name: Bacteroides sp.


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Firmicutes bacterium CAG:124

ncbi_submitter: DTU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:124


ncbi_organism_name: uncultured Phycisphaerales bacterium


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_submitter: Universite Laval


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Somov Institute of Epidemiology and Microbiology


ncbi_organism_name: Caulobacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: China CDC


ncbi_organism_name: Salmonella sp. C3191

ncbi_submitter: Sichuan University


ncbi_organism_name: Capnocytophaga cynodegmi

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: doe


ncbi_organism_name: Acetatifactor sp.


ncbi_organism_name: Salmonella sp. C3260


ncbi_organism_name: Streptomyces prunicolor

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Chifeng Center for Disease Control and Prevention


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sheffield


ncbi_organism_name: Streptomyces cinereoruber

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: freshwater MAG --- MJ120924A_bin-212

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: bacterium

ncbi_submitter: California Institute of Technology


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Pacific Ocean: South China Sea

ncbi_isolation_source: deap sea cold seep sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CHINESE ACADEMY OF SCIENCES


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_assembly_name: freshwater MAG --- AlinenSedimentsCore2_bin-2051

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured Lentisphaerota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__environmental samples;s__uncultured Lentisphaerota bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Semmelweis University


ncbi_organism_name: Synechocystis sp. PCC 6803

ncbi_submitter: HBNU


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Atlantic Ocean: Sargasso Sea; BATS

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; marine water

ncbi_organism_name: SAR86 cluster bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium


ncbi_country: Greece

ncbi_organism_name: Sinorhizobium meliloti WSM1022

ncbi_submitter: JGI


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: SD

ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Ireland: Johnstown Castle; Wexford

ncbi_isolation_source: Grass with Chicken Manure

ncbi_strain_identifiers: GP T1 SC CEF 3

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Penn State


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Faecalicoccus pleomorphus

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_organism_name: Sporofaciens sp. JLR.KK001

ncbi_submitter: University of Utah


ncbi_country: Turkey

ncbi_isolation_source: throat swab

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Zhejiang; Hangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_country: China

ncbi_organism_name: Sphingomonas sp. BHC-A

ncbi_strain_identifiers: BHC-A

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sobrinus TCI-396

ncbi_submitter: JCVI


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: natural casing frankfurters

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA

ncbi_submitter: Cepheid


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO