ncbi_country: India: Burabazar; Shillong; Meghalaya

ncbi_isolation_source: beef

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICAR Research Complex for NEH Region


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: China: Guizhou; Jiuan

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: France

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: University of Basel


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Oregon State University


ncbi_country: Kenya

ncbi_isolation_source: feces


ncbi_country: Saint Kitts and Nevis: Saint Kitts; Basseterre

ncbi_isolation_source: skin lesion from farm animal

ncbi_organism_name: Dermatophilus congolensis

ncbi_submitter: Ross University School of Veterinary Medicine


ncbi_organism_name: Streptomyces sp. NPDC003280

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Mycoplasmopsis synoviae

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_organism_name: Bacteroides acidifaciens


ncbi_country: USA: Minnesota

ncbi_submitter: Kansas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Japan: Kanto

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Netherlands

ncbi_organism_name: Bacillus wiedmannii

ncbi_strain_identifiers: RIMV BC 126

ncbi_submitter: TU Muenchen


ncbi_isolation_source: human gut

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: EMG


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Mycolicibacterium fortuitum

ncbi_submitter: Ondokuz Mayis University, Faculty of Veterinary Medicine


ncbi_organism_name: Brachybacterium sacelli

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_assembly_level: Chromosome

ncbi_assembly_name: IMG-taxon 2634166335 annotated assembly

ncbi_organism_name: Arcanobacterium phocae

ncbi_refseq_category: reference genome

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Complete Genome

ncbi_country: South Korea

ncbi_isolation_source: liver

ncbi_organism_name: Escherichia coli O78:H4

ncbi_strain_identifiers: APEC E19057

ncbi_submitter: Seoul National University


ncbi_country: Iraq: Ibn Sina

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii IS-143

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Klebsiella pneumoniae Strain NB60 whole-genome sequencing

ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae NB60

ncbi_submitter: Ningbo First Hospital


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Weeksellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Paramuribaculum sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yangzhou University


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Russia: Sakhalin; Daginskiye Thermal Springs

ncbi_isolation_source: enrichment culture from terrestrial mud volcano

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_organism_name: Fusobacterium necrophorum subsp. funduliforme

ncbi_submitter: University Hospital Center and University of Lausanne


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Navamindradhiraj University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Xanthomonas citri pv. mangiferaeindicae

ncbi_submitter: NSW Department of Primary Industries

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. mangiferaeindicae


ncbi_organism_name: Exiguobacterium profundum

ncbi_submitter: Liverpool School of Tropical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium profundum


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: Candidatus Izemoplasmatales bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__unclassified Candidatus Izemoplasmatales;s__Candidatus Izemoplasmatales bacterium


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Environmental Microbiology OMICS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Zhejiang University


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_submitter: University of Wuerzburg


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Terriglobales bacterium


ncbi_organism_name: Blastocatellia bacterium


ncbi_country: Denmark: Damhusaen

ncbi_isolation_source: activated sludge from Damh_18-Q3-R51-60

ncbi_submitter: Aalborg University


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: Pacific Ocean

ncbi_isolation_source: North Pacific Ocean

ncbi_organism_name: Methylobacterium sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: Morganella morganii

ncbi_submitter: National Chung Cheng University


ncbi_organism_name: Burkholderia ambifaria AMMD

ncbi_strain_identifiers: AMMD

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Utah

ncbi_isolation_source: blood stream

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Intermountain Healthcare


ncbi_country: Germany

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD9144

ncbi_submitter: Chinese University of Hong Kong


ncbi_isolation_source: walls of a distilled-spirit-fermenting cellar

ncbi_organism_name: Pediococcus ethanolidurans

ncbi_submitter: Shanghai Majorbio


ncbi_country: Canada: Inwood; Manitoba

ncbi_isolation_source: feeder

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: USDA/ARS/National Animal Disease Center


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Phyllobacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA


ncbi_country: Mexico: Guadalajara

ncbi_isolation_source: Secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_submitter: Monash University


ncbi_country: Serbia: Vojvodina Province

ncbi_isolation_source: leaves

ncbi_organism_name: Pseudomonas syringae pv. aptata

ncbi_submitter: Faculty of Biology, University of Belgrade

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. aptata


ncbi_organism_name: Allosphingosinicella sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Verona, Italy


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: Conjunctivae

ncbi_organism_name: Staphylococcus aureus M1057

ncbi_submitter: Hvidovre Hospital - University of Copenhagen


ncbi_country: Canada: Quebec

ncbi_isolation_source: swab

ncbi_submitter: Government of Canada


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: NE

ncbi_isolation_source: Steers

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: CVM N59745F

ncbi_submitter: FDA


ncbi_country: India: Haryana; Gurugram Civil Hospital

ncbi_isolation_source: high vaginal swab

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Interdisciplinary Group for Advanced Research on Birth Outcomes – A DBT India Initiative (GARBH-Ini)


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Michigan


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Cleveland Clinic


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: France: APHM

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: IHU AIX MARSEILLE UNIVERSITY


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_country: Denmark

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: Grønt Udviklings- og Demonstrationsprogram (GUDP)


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: fecal sample

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Altererythrobacter sp.


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Microcoleus sp. S36a_D3

ncbi_submitter: Palacky University Olomouc


ncbi_country: China

ncbi_isolation_source: Pus

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University,Shanghai, China


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Ireland: Cork

ncbi_isolation_source: milk

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University College Cork


ncbi_assembly_name: Rumen uncultured genome RUG10356

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Flexilinea sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: JCVI


ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: Spain:Coast of Alicante; Western Mediterranean Sea; close to the coast of Guardamar del Segura

ncbi_isolation_source: seawater from mariculture cage of adult gilthead seabream (Sparus aurata)

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: University of Wisconsin Hospital

ncbi_organism_name: Enterococcus faecalis EnGen0404

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli O26

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Candidatus Blautia stercorigallinarum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: United Kingdom

ncbi_isolation_source: Bulk milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Antarctica

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudoalteromonas sp. Z9A4

ncbi_submitter: Shandong University


ncbi_organism_name: Raineya sp.

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Germany

ncbi_isolation_source: Food production environment

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: China: The East China Sea

ncbi_isolation_source: surface seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Ocean University of China


ncbi_country: Brazil

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_country: Switzerland

ncbi_isolation_source: Swiss semi-hard red-smear cheese

ncbi_organism_name: Clostridium tyrobutyricum

ncbi_submitter: Agroscope


ncbi_assembly_name: Rumen uncultured genome RUG10753

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Greece

ncbi_isolation_source: bulk-tank raw milk of sheep farms

ncbi_organism_name: Listeria ivanovii

ncbi_submitter: University Hospital of Larissa


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Bifidobacterium catenulatum


ncbi_organism_name: Flammeovirgaceae bacterium SG7u.111

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_organism_name: Pseudolysinimonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG11

ncbi_submitter: Environmental Microbiology Lab


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Acetomicrobium flavidum

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huzhou CDC


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Sulfurimonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: UANTW


ncbi_country: Canada: Guelph

ncbi_isolation_source: soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_organism_name: Waltera sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Spain: Palencia

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Swedish Defence Research Agency (FOI)


ncbi_country: USA:Alaska; North Slope; Kuparuk formation

ncbi_isolation_source: oil reservoir sample K2

ncbi_organism_name: Pseudothermotoga lettingae

ncbi_submitter: Lawrence Berkeley National Lab


ncbi_organism_name: Pseudarthrobacter sulfonivorans

ncbi_submitter: Chinese Academy of Sciences


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Nitrosospira sp.

ncbi_submitter: Department of Life Science & Medical Bioscience, School of Advanced Science and Engineering, Waseda University


ncbi_organism_name: Staphylococcus nepalensis

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Helicobacter pylori GAM83Bi

ncbi_submitter: Washington University


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: EPFL


ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: MS

ncbi_isolation_source: clinical

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. 90-0318


ncbi_organism_name: Parvularculales bacterium

ncbi_submitter: Universidad de Alicante


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_organism_name: Ekhidna sp. To15

ncbi_submitter: University of Washington


ncbi_country: Italy

ncbi_isolation_source: feces

ncbi_organism_name: Jeotgalicoccus aerolatus

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Cellulosimicrobium cellulans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudoalteromonas nigrifaciens

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_country: Switzerland: Kanton Zug

ncbi_isolation_source: environmental: river near WWTP effluent

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_country: China: Shenzhen

ncbi_organism_name: Ruminococcus sp. AF17-6

ncbi_submitter: BGI


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_country: USA: Michigan

ncbi_isolation_source: Patient with bloody diarrhea

ncbi_submitter: U.S. Food and Drug Administration


ncbi_country: China: Shanghai

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Streptomyces sp. NBC_00208

ncbi_submitter: Technical University of Denmark


ncbi_country: Mexico: Cuernavaca Morelos

ncbi_organism_name: Rhizobium leguminosarum bv. trifolii

ncbi_submitter: Centro de Ciencias Genomicas, UNAM


ncbi_assembly_name: freshwater MAG --- LaPlata-1m-b_bin-052

ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_country: Viet Nam:Hanoi

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_country: France

ncbi_isolation_source: wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Institut des Sciences de la Vigne et du Vin


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Portugal

ncbi_isolation_source: Environment

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO, Faculty of Pharmacy, University of Porto


ncbi_country: China: Hangzhou

ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella sp. S048_01045

ncbi_submitter: Zhejiang University


ncbi_country: USA: Goucher College; Baltimore; Maryland

ncbi_isolation_source: skin mucus

ncbi_organism_name: Delftia tsuruhatensis

ncbi_submitter: Goucher College


ncbi_organism_name: Escherichia coli M20

ncbi_submitter: Department of Pediatrics, Washington University School of Medicine


ncbi_country: Antarctica: Maitri station

ncbi_organism_name: Marisediminicola senii

ncbi_submitter: National Centre for Cell Science


ncbi_isolation_source: Fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Parma


ncbi_organism_name: Parasynechococcus sp.

ncbi_submitter: HKUST


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: bacterium

ncbi_submitter: Northwestern University


ncbi_assembly_name: IMG-taxon 2634166344 annotated assembly

ncbi_organism_name: Corynebacterium mycetoides

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Burkholderiales bacterium


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Lunds Universitet


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Plantibacter sp. Leaf314

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: USA: WA

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Washington


ncbi_country: South Korea

ncbi_organism_name: Pseudonocardia spinosispora DSM 44797

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Colon

ncbi_organism_name: Dubosiella newyorkensis


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Tift Co. GA

ncbi_isolation_source: peanut blossom

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: freshwater

ncbi_organism_name: Limnohabitans sp. 103DPR2

ncbi_submitter: Chungnam National University


ncbi_country: Tunisia

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-before chlorination

ncbi_organism_name: Methylomonas sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Germany: Bremerhaven

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O104:H4;x__Escherichia coli O104:H4 str. 11-02033-1


ncbi_organism_name: Aerococcus tenax

ncbi_submitter: STATENS SERUM INSTITUT


ncbi_organism_name: Paucisalibacillus sp. EB02

ncbi_submitter: ebi


ncbi_organism_name: Paenibacillus timonensis

ncbi_submitter: Tarim University


ncbi_organism_name: Fructobacillus pseudoficulneus

ncbi_submitter: Faculty of Bioindustry, Tokyo University of Agriculture


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: Wheatland; New York

ncbi_organism_name: Pseudomonas alabamensis

ncbi_strain_identifiers: RIT-PI-AB

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: Bacillus cereus VD118

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus VD118


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: UC San Diego


ncbi_country: Chile

ncbi_isolation_source: kelp gull (Larus dominicanus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Burkholderia mallei

ncbi_strain_identifiers: Mukteswar

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: Brazil

ncbi_isolation_source: contaminated culture of Mycobacterium chubuense ATCC27278

ncbi_organism_name: Alcaligenes faecalis subsp. faecalis

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_isolation_source: cold seep

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_country: India

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Christian Medical College


ncbi_organism_name: bacterium


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_submitter: University of Montreal


ncbi_organism_name: uncultured Elusimicrobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chulalongkorn University


ncbi_assembly_name: Pseudomonas aeruginosa strain PE151

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Benemerita Universidad Autonoma de Puebla


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Dokdonia sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolate: AOP1_A1_surf _bin _3

ncbi_organism_name: Corynebacterium casei

ncbi_strain_identifiers: AOP1_A1_surf _bin _3

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Steroidobacterales bacterium

ncbi_submitter: University of Galway


ncbi_organism_name: Treponema socranskii

ncbi_strain_identifiers: OMZ 825A1

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Evtepia gabavorous

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Puyang Oil Field General Hospital


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Lund University


ncbi_country: Canada: North Alberta

ncbi_isolation_source: Suncor tailing pond sample

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium UBA4776


ncbi_organism_name: Vampirovibrionales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: EPFL


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay water

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Clemson University


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: State University of Londrina


ncbi_organism_name: Pseudonocardia sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhongnan Hospital of Wuhan University


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Italy: Trento

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Rhizobiales bacterium X1A

ncbi_submitter: University of Trento


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Mediterraneibacter glycyrrhizinilyticus JCM 13369

ncbi_submitter: The University of Tokyo


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Veillonella sp.

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Russia: Rostov-na-Donu

ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium pseudodiphtheriticum

ncbi_submitter: SRCAMB


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay site A

ncbi_isolation_source: Beach sand

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Monash University


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: Planktotalea sp.

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: AAFC


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Dehalococcoides mccartyi

ncbi_submitter: University of Iowa


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: USDA 5

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Stanford University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: Kyungpook National University


ncbi_country: Ukraine: eastern Crimea

ncbi_isolation_source: bubbling pool in the central crater-like structure of an active mud volcano

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: University of Washington


ncbi_organism_name: Streptomyces sp. NBC_00841

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: Taiwan

ncbi_isolation_source: water

ncbi_organism_name: Aquabacterium lacunae

ncbi_submitter: National Kaohsiung University of Science and Technology


ncbi_organism_name: Brucella abortus

ncbi_submitter: Universidade Federal de Lavras


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Salmonella sp. B8

ncbi_submitter: Shandong Second Medical University


ncbi_country: USA: Georgia

ncbi_isolation_source: week A5 calf 102 isolate 3

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Food Animal Health and Mangement Program, University of Georgia


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_submitter: Universite de Montreal


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Qipengyuania flava

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Sphingobacterium cellulitidis

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: University of Chicago


ncbi_country: USA

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Wuzhishan Nature Reserve; Hainan

ncbi_isolation_source: root

ncbi_organism_name: Streptomyces kronopolitis

ncbi_submitter: Chinese Academy of Tropical Agricultural Sciences


ncbi_country: China: Xinjiang Province

ncbi_organism_name: Klebsiella sp. LTGPAF-6F

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Streptococcus sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Escherichia coli

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_organism_name: Shigella sonnei

ncbi_submitter: Christian Medical College


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Limnohabitans sp. Rim8

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Rhodococcus sp. 06-462-5

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. 06-462-5


ncbi_country: China: Guangzhou; Guangdong

ncbi_isolation_source: food fermentation

ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: The Fifth Affiliated Hospital of Guangzhou Medical University


ncbi_country: China: Yunnan

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yunnan Provincial Centre for Disease Control and Prevention


ncbi_organism_name: Citrobacter werkmanii


ncbi_country: USA: Seattle; WA

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Washington


ncbi_country: Iran

ncbi_isolation_source: blood culture

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: IHU Mediteranee Infection


ncbi_country: Uganda: Bombo Military Hospital

ncbi_isolation_source: PUS

ncbi_submitter: Makerere University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: seawater

ncbi_organism_name: uncultured Planktomarina sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: Biology Centre CAS


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Case Western Reserve University


ncbi_organism_name: Pseudomonas sp.


ncbi_assembly_name: freshwater MAG --- AM-2014-D8_bin-0159

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho university


ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 210

ncbi_organism_name: Staphylococcus arlettae

ncbi_strain_identifiers: SNUC 3029

ncbi_submitter: University of Calgary


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Missouri Soil

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Ohio State university


ncbi_country: Latvia

ncbi_organism_name: Pectobacterium versatile

ncbi_submitter: Institute of Bioorganic Chemistry


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institut Pasteur


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: [Eubacterium] infirmum

ncbi_submitter: EMG


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: Germany

ncbi_isolation_source: UHT-milk

ncbi_organism_name: Heyndrickxia sporothermodurans

ncbi_submitter: Max Rubner-Institut


ncbi_country: South Korea: Jeju

ncbi_isolation_source: soil inside a cave

ncbi_organism_name: Antrihabitans cavernicola

ncbi_submitter: BioPS Co., Ltd.


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolate: Luteimonas sp. 9C

ncbi_organism_name: Luteimonas sp. 9C

ncbi_strain_identifiers: Luteimonas sp. 9C

ncbi_submitter: Elham Karimi


ncbi_country: China

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Jiangnan University


ncbi_assembly_name: Olsenella massiliensis

ncbi_organism_name: Olsenella massiliensis

ncbi_submitter: URMITE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: fermentation

ncbi_organism_name: Syntrophomonas sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Nostoc sp. DedQUE03

ncbi_submitter: LANGEBIO


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Agathobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_assembly_name: Rumen uncultured genome RUG12678

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: FL

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: JCVI


ncbi_isolation_source: soil

ncbi_organism_name: Caenibius sp. WL

ncbi_strain_identifiers: WL

ncbi_submitter: Shanghai Jiaotong University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: INRA-MIG


ncbi_country: Nepal: Himalayas; soil from near a hot spring

ncbi_isolation_source: alpine soil [ENVO:00005741]

ncbi_organism_name: Streptomyces sp. MBT70

ncbi_submitter: Institute of Biology, Leiden University


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: United Kingdom: London

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_organism_name: Pseudolactococcus chungangensis

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_isolate: MAG 573

ncbi_organism_name: Xylella fastidiosa subsp. fastidiosa

ncbi_strain_identifiers: MAG 573

ncbi_submitter: Virginia Tech


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: Altavista; VA

ncbi_isolation_source: PCB contaminated wastewater treatment lagoon sediment microcosms

ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: University of Iowa


ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolate: Escherichia coli str. 3426

ncbi_strain_identifiers: Escherichia coli str. 3426

ncbi_submitter: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikro


gtdb_type_species_of_genus: t

ncbi_organism_name: Marinilabilia salmonicolor JCM 21150

ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Marinilabiliales;f__Marinilabiliaceae;g__Marinilabilia;s__Marinilabilia salmonicolor;x__Marinilabilia salmonicolor JCM 21150


ncbi_country: Switzerland

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: China: Ningxia

ncbi_isolation_source: chicken cloacal swab

ncbi_submitter: China Agricultural University


ncbi_country: USA: NH

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Dartmouth College


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Iowa State University


ncbi_country: China: Shangdong

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_organism_name: Veillonella parvula

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: USA

ncbi_isolation_source: Wound

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: JAMSTEC


ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Staphylococcus capitis


ncbi_country: Peru

ncbi_organism_name: Staphylococcus aureus DAR5883

ncbi_submitter: Broad Institute


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: China: Henan

ncbi_isolation_source: xylem sap

ncbi_organism_name: Pantoea eucrina

ncbi_strain_identifiers: YYCK 506

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_organism_name: Streptomyces sp. NPDC007110

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Malaysia

ncbi_organism_name: Mycobacterium sp. UM_Kg17

ncbi_submitter: Universiti Malaya


ncbi_country: USA: St. Louis; Missouri

ncbi_isolation_source: soil

ncbi_organism_name: Rhodobacter capsulatus

ncbi_strain_identifiers: SL

ncbi_submitter: Bellevue University


ncbi_assembly_name: Rumen uncultured genome RUG12068

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: Germany

ncbi_isolation_source: milk powder

ncbi_organism_name: Anoxybacillus flavithermus

ncbi_submitter: Technical University Munich


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Caecum

ncbi_organism_name: Eubacterium plexicaudatum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Technical University of Munich


ncbi_country: Spain

ncbi_organism_name: Xanthomonas nasturtii

ncbi_submitter: University of Exeter


ncbi_isolation_source: dairy farm

ncbi_organism_name: Mammaliicoccus sp. I-M36

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Magnetovibrio sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_assembly_name: freshwater MAG --- A14_bin-2522

ncbi_isolation_source: pond

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0603

ncbi_submitter: Broad Institute


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Greece

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: bioMerieux


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: human gut

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: cerebrospinal fluid from infant

ncbi_organism_name: Cellulomonas hominis

ncbi_submitter: Unite de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE) CNRS, Faculte de Medecine, Universite de la Mediterranee, Marseille, France


ncbi_isolation_source: pig gut metagenome


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: Rectal swab

ncbi_submitter: Univeristy of Pretoria and National Health Laboratory Services


ncbi_organism_name: uncultured Porphyromonas sp.


ncbi_organism_name: Aerococcus sanguinicola


ncbi_country: France: Frejus

ncbi_isolation_source: Redon

ncbi_organism_name: Acinetobacter sp. CIP 102082


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_country: Brazil: Florianopolis

ncbi_isolation_source: Sesbania spp. root nodule

ncbi_organism_name: Pantoea cypripedii

ncbi_submitter: UFSC


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_submitter: University of Otago


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: water column

ncbi_organism_name: Vibrio sp. V39_P1S14PM300

ncbi_submitter: Instituto de ecologia


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_country: Denmark: Kalundborg

ncbi_isolation_source: activated sludge from Kalu_18-Q3-R12-55

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_organism_name: Rothia terrae

ncbi_submitter: Zhejiang University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China

ncbi_isolation_source: soil from chicken farm

ncbi_submitter: Sichuan University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Taiwan

ncbi_isolation_source: Taiwan

ncbi_strain_identifiers: Minun

ncbi_submitter: National Chung Cheng University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: milk powder

ncbi_organism_name: Anoxybacillus flavithermus

ncbi_submitter: Technical University Munich


ncbi_organism_name: Clavibacter nebraskensis

ncbi_submitter: Penn State University


ncbi_organism_name: Verrucomicrobiales bacterium


ncbi_country: China: Longli Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_submitter: Linnaeus University


ncbi_assembly_name: freshwater MAG --- KTt_bin-0053

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D10_bin-0933


ncbi_isolation_source: human gut

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Acinetobacter gyllenbergii

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institute of Chemistry, National Autonomous University of Mexico (UNAM)


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: [Clostridium] leptum


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: China: Zhijin Polymetallic Mine; Guizhou Province

ncbi_organism_name: Actinomycetes bacterium


ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolate: SPRUCE 189

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_strain_identifiers: SPRUCE 189

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteriovoracia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Ghent University


ncbi_country: USA: IN

ncbi_isolation_source: soil

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Rhodobacter capsulatus

ncbi_submitter: University of British Columbia


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Washington

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Aerococcus sp.

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_country: Thailand

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: jiangnan


ncbi_organism_name: Olsenella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: United Kingdom

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Leicester


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_country: USA: Georgia

ncbi_isolation_source: retail store

ncbi_organism_name: Providencia rustigianii

ncbi_submitter: University of Georgia


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: Salmonella enterica CVM N51302 v1.0

ncbi_country: USA: NY

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NBC_00659

ncbi_submitter: Technical University of Denmark


ncbi_country: Russia: Pushchino

ncbi_isolation_source: forest soil

ncbi_organism_name: Rhodococcus opacus

ncbi_submitter: IBPM RAS


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_submitter: Peking University People's Hospital


ncbi_country: China: Xiamen

ncbi_isolation_source: sand

ncbi_organism_name: Roseovarius amoyensis

ncbi_submitter: Third Institute of Oceanography


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: wheat grass

ncbi_organism_name: Bacillus cereus

ncbi_submitter: AARHUS UNIVERSITY, DEPARTMENT OF FOOD SCIENCE


ncbi_country: Mexico: Rio Frio de Juarez

ncbi_isolation_source: biological sample of female sheep

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_organism_name: Thalassospira sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptomyces sp. SID8385

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 3201 hospital, Hanzhong


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_country: Denmark

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Valencia


ncbi_isolation_source: Human

ncbi_organism_name: Achromobacter insolitus

ncbi_submitter: GHENT UNIVERSITY


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Nonlabens tegetincola

ncbi_submitter: EMG


ncbi_country: USA: NC

ncbi_isolation_source: Irrigation water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Turkey: Samsun

ncbi_isolation_source: plant tissue

ncbi_organism_name: Micromonospora sp. CPM1

ncbi_submitter: Ondokuz Mayis University


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: Lake Lanier

ncbi_organism_name: Chloroflexi bacterium UBA2235

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__unclassified Chloroflexota;s__Chloroflexi bacterium UBA2235


ncbi_country: USA: Hawaii

ncbi_isolation_source: Pacific oyster seed

ncbi_organism_name: Vibrio sp. RE88

ncbi_submitter: Oregon State University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: [Clostridium] nexile

ncbi_submitter: University of Chicago


ncbi_country: USA: Seattle

ncbi_isolation_source: Airway secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SCH


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Belarus: Gomel

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Northumbria University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: United Kingdom: Great Yarmouth

ncbi_isolation_source: surface coastal seawater

ncbi_organism_name: Glaciecola sp.

ncbi_submitter: Ocean university of China


ncbi_organism_name: uncultured Puniceicoccaceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: BGI-Shenzhen


ncbi_country: Spain

ncbi_submitter: Universidad Complutense de Madrid


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Brevundimonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_isolation_source: soil

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA5152


ncbi_isolation_source: freshwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Belgium

ncbi_isolation_source: Vitamin B2 feed additive

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Sciensano


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Microbacteriaceae bacterium UBA1487


ncbi_organism_name: Paraburkholderia sp. BR14427

ncbi_submitter: The James Hutton Institute


ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France

ncbi_isolation_source: meat

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: University of Surrey


ncbi_organism_name: Finegoldia magna

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Enterobacter quasihormaechei

ncbi_strain_identifiers: Hakim RU_CBWE

ncbi_submitter: University of Rajshahi


ncbi_country: China: Guangzhou

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. TH228LC

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. TH228LC


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella sp. S049_01139

ncbi_submitter: Zhejiang University


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Belarus: Minsk Region

ncbi_isolation_source: grapevine phylloplane

ncbi_organism_name: Bacillus altitudinis

ncbi_strain_identifiers: BIM B-263

ncbi_submitter: Institute of Microbiology, National Academy of Sciences of Belarus


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Rhodococcus sp. Leaf225

ncbi_submitter: Max Planck Institute for Plant Breeding Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. Leaf225


ncbi_country: USA

ncbi_submitter: Icahn School of Medicine


ncbi_country: Mali

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: Xanthomonas phaseoli pv. phaseoli

ncbi_submitter: IRHS


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: USDA-ARS


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: USA: Marcell Experimental Forest

ncbi_organism_name: Syntrophaceae bacterium UBA1163

ncbi_submitter: University of Queensland


ncbi_country: Australia: Shark Bay; Heron Island

ncbi_isolation_source: marine

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: The University of Queensland


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Gramella sp. Hel_I_59

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: Rumen uncultured genome RUG11151

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Gordonia hydrophobica NBRC 16057

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Egypt: Ismailia

ncbi_isolation_source: root nodules

ncbi_organism_name: Frankia sp. CgMI4

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_country: Switzerland

ncbi_isolation_source: skin

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Lausanne University Hospital


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_assembly_name: Rumen uncultured genome RUG472

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Texas A&M University


ncbi_isolation_source: urine sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The British University in Egypt


ncbi_country: Netherlands

ncbi_isolation_source: Mushroom soup

ncbi_organism_name: Geobacillus sp. B4113_201601

ncbi_submitter: University of Groningen


ncbi_organism_name: bacterium

ncbi_submitter: University of Utah


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Wuerzburg


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: China: Shenzhen

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: BGI


ncbi_assembly_name: CMBFB

ncbi_organism_name: Streptomyces coriariae

ncbi_strain_identifiers: CMB-FB

ncbi_submitter: Center for Biotechnology, Bielefeld University


ncbi_isolate: CP PB-1

ncbi_isolation_source: Food

ncbi_organism_name: Clostridium perfringens

ncbi_strain_identifiers: CP PB-1

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_submitter: First Affiliated Hospital of Nanchang University, Nanchang University, Nanchang


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Pseudomonas syringae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: Kenya

ncbi_organism_name: Opitutia bacterium UBA6410

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__unclassified Opitutia;s__Opitutia bacterium UBA6410


ncbi_country: USA: NY

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Newport

ncbi_submitter: New York State Dept. of Health - Wadsworth Center


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Candidatus Sabulitectum sp.

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;g__Candidatus Sabulitectum;x__unclassified Candidatus Sabulitectum;s__Candidatus Sabulitectum sp.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: compliance

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Candidatus Sedimenticola sp. 6PFRAG7

ncbi_submitter: University of Vienna


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Litorivivens lipolytica

ncbi_strain_identifiers: CECT 8654


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_country: China

ncbi_organism_name: Prauserella halophila


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Australia: Newcastle

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: China: Zhejiang; Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Zhejiang university


ncbi_country: Australia: QLD

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_isolation_source: Semen

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: URMITE


ncbi_organism_name: Segatella maculosa


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Lacombe

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Taiwan

ncbi_organism_name: Citrobacter freundii


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: Universite Laval


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Washington University School of Medicine


ncbi_country: France

ncbi_isolation_source: wild boar

ncbi_organism_name: Escherichia coli O139:H1

ncbi_submitter: INSERM IRSD U1220


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Halieaceae bacterium UBA4469

ncbi_submitter: University of Queensland


ncbi_organism_name: Oliverpabstia sp.


ncbi_organism_name: Tritonibacter scottomollicae


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Jiliang University


ncbi_country: China: Shandong

ncbi_isolation_source: nodule

ncbi_organism_name: Bradyrhizobium sp. CCBAU 25338

ncbi_strain_identifiers: CCBAU 25338

ncbi_submitter: China Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: South China Agricultural University


ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: China Medical University


ncbi_organism_name: Streptomyces zaomyceticus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: University of California San Diego


ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Streptomyces sp. NPDC050433

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella sp. ZJHZ21_0202

ncbi_submitter: Zhejiang university


ncbi_organism_name: Kitasatospora sp. NPDC092286


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Fervidobacterium gondwanense

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-306

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Chlorobiota bacterium

ncbi_strain_identifiers: new MAG-306

ncbi_submitter: Micoorganism

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__unclassified Chlorobiota;s__Chlorobiota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JiLin Agricultural Science and Technology University


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen people's hospital


ncbi_organism_name: Enterococcus sp. DIV1368b

ncbi_submitter: Broad Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_country: Czech Republic: Czech Forest mountains

ncbi_isolation_source: water with sediment from a forest pond

ncbi_organism_name: Acinetobacter sp. ANC 3813

ncbi_submitter: National Institute of Public Health


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_isolation_source: Taichung Veterans General Hospital

ncbi_submitter: National Chung Cheng University


ncbi_country: Bulgaria

ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Puia sp.

ncbi_submitter: Zhejiang University


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Acidovorax sp. Root217

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: China: Beijing

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: Psychrobacter sp. JCM 18903

ncbi_submitter: The University of Tokyo


ncbi_country: USA: Illinois

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_assembly_name: R-12632 assembly

ncbi_organism_name: Burkholderia sola

ncbi_submitter: LM-UGent


ncbi_organism_name: Robertmurraya dakarensis

ncbi_submitter: URMITE


ncbi_country: China: Hangzhou

ncbi_isolation_source: bloodstream


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA:TX; Galveston; East Beach

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. SWI36

ncbi_submitter: Willamette University


ncbi_country: United Kingdom

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Helicobacter pylori HP250BFiii

ncbi_submitter: Washington University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_isolation_source: clinical

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Tunturiibacter gelidiferens

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptomyces ipomoeae

ncbi_submitter: Oregon State University


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


ncbi_organism_name: Faecalicoccus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Zhejiang

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Serratia marcescens

ncbi_submitter: the First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_submitter: Sheba Medical Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Spain: Santa pola

ncbi_isolation_source: banquettes

ncbi_organism_name: Leptolyngbyaceae cyanobacterium MAG.088

ncbi_submitter: University of Alicante


ncbi_country: Antarctica: Eastern Antarctica; Mount Seuss

ncbi_isolate: MSU bin54

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: MSU bin54

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China

ncbi_isolation_source: maybe soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Australia: Brisbane

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: The University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Tang lab


ncbi_country: Indian Ocean

ncbi_isolation_source: Deep-sea sediments

ncbi_organism_name: Qipengyuania citrea

ncbi_submitter: Third Institute of Oceanography,National Oceanic Adminisstration


ncbi_assembly_name: freshwater MAG --- LJ-7-9m_bin-0376

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: vagina

ncbi_organism_name: Lancefieldella parvula DNF00906

ncbi_submitter: JCVI


ncbi_country: Denmark

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: Grønt Udviklings- og Demonstrationsprogram (GUDP)


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: USA: Detroit; MI

ncbi_isolation_source: vaginal swab

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: University of Maine


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0467

ncbi_submitter: Broad Institute


ncbi_country: USA: WA

ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: University of Washington


ncbi_assembly_name: Rumen uncultured genome RUG10520

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Victivallis lenta

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Germany: Bonn

ncbi_isolation_source: organic material

ncbi_organism_name: Serratia plymuthica

ncbi_submitter: Graz University of Technology


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcaceae bacterium AM104-55

ncbi_submitter: BGI-Shenzhen


ncbi_country: Egypt: Mansoura

ncbi_isolation_source: Urinary catheter

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Sinimarinibacterium flocculans

ncbi_submitter: Xiamen University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Jiangsu

ncbi_isolation_source: pigeon

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_organism_name: Shewanella sp. D64

ncbi_submitter: Shanghai Ocean University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: In-house environment

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Switzerland

ncbi_isolation_source: stool

ncbi_submitter: University of Bern


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Ireland: Dublin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Dublin Dental University Hospital


ncbi_organism_name: uncultured Micrococcales bacterium

ncbi_submitter: EMG


ncbi_country: Venezuela

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolate: metabat2_XCR1_HET_6741_bwa.41 MAG

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_strain_identifiers: metabat2_XCR1_HET_6741_bwa.41 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Canterbury Health Laboratories


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Genskey