ncbi_organism_name: uncultured Alistipes sp.


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_assembly_level: Contig

ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


gtdb_representative: t

ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: China: Shenzhen Children s Hospital

ncbi_isolation_source: stool

ncbi_submitter: ShenZhen Children's Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Stanley


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Streptomyces stelliscabiei

ncbi_submitter: Oregon State University


ncbi_country: USA

ncbi_isolation_source: hide

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kansas State University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Escherichia coli O103:H11 str. 04-3023

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O103:H11;x__Escherichia coli O103:H11 str. 04-3023


ncbi_isolation_source: uncut heroin sample

ncbi_organism_name: Bacillus sp. 7504-2

ncbi_submitter: Bielefeld University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 7504-2


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Salinispora arenicola CNT799

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Ralstonia syzygii

ncbi_strain_identifiers: NCPPB 3445

ncbi_submitter: Wageningen Plant Research


ncbi_country: China: Central China Fuwai Hospital of Zhengzhou University

ncbi_isolation_source: Blood from patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: YangZhou university


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1442 from squamous cell carcinomas patient MST008

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Queensland


gtdb_type_species_of_genus: t

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_strain_identifiers: NCTC 8375

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: USA: New York City

ncbi_isolation_source: rectal swab

ncbi_submitter: Columbia University Medical Center


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Mexico

ncbi_isolation_source: river water

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_assembly_level: Complete Genome

ncbi_country: Tanzania: Mvomero

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Institut de Recherche pour le Developpement


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Merdibacter merdigallinarum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Trento


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: Undibacterium sp. SXout11W

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_submitter: National Centre for Infectious Diseases


ncbi_assembly_level: Chromosome

ncbi_organism_name: Brevundimonas sp. 3P08AB

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Vibrio cyclitrophicus

ncbi_submitter: Ocean University of China


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Christian Medical College


ncbi_submitter: robert koch institut


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: bglFP 6814

ncbi_submitter: University of Amsterdam


ncbi_organism_name: uncultured Thiopseudomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Quebec

ncbi_isolation_source: human

ncbi_submitter: Laboratoire de sante publique du Quebec

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: USA: Ohio

ncbi_isolation_source: hospital shower hose biofilm

ncbi_organism_name: Bradyrhizobium sp. CCH10-C7

ncbi_submitter: U.S. Environmental Protection Agency


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Colwellia sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: PulseNet USA


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus pasteuri SP1

ncbi_submitter: BGI


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Pseudomonas sp. ISL-88

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_isolate: SPRUCE 305

ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 305

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus xerothermodurans

ncbi_refseq_category: reference genome

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Oklahoma


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: China-Japan Friendship Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: KAUST


ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Blautia sp.


ncbi_organism_name: Bermanella sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Serratia bockelmannii


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured beta proteobacterium


ncbi_isolate: AOP42_C1_surf _bin _28

ncbi_organism_name: Staphylococcus equorum

ncbi_strain_identifiers: AOP42_C1_surf _bin _28

ncbi_submitter: Genoscope


ncbi_organism_name: Candidatus Desantisbacteria bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Desantisiibacteriota;x__unclassified Candidatus Desantisbacteria;s__Candidatus Desantisbacteria bacterium


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: 57357 Hospital


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidad Complutense de Madrid


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: University of British Columbia


ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Chile: Region del Maule; Estero Los Robles

ncbi_isolation_source: termite gut

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: California Institute of Technology


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Opitutales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Anaeroplasmataceae bacterium


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_isolation_source: mouse gut metagenome


ncbi_country: Brazil: Fortaleza


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UNIVERSITY MEDICAL CENTER UTRECHT


ncbi_country: USA: IN

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Variovorax sp. V15

ncbi_submitter: Kyoto University


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Fermentibacterota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;x__unclassified Candidatus Fermentibacterota;s__Candidatus Fermentibacterota bacterium


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: McGill University


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_organism_name: Lactobacillales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: EMG


ncbi_country: Indian Ocean

ncbi_isolation_source: deep-sea hydrothermal sulfide

ncbi_organism_name: Marinobacter sp. SS5-14b

ncbi_submitter: National Oceanic Administration of China


ncbi_country: France

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: ANSES


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: North West University


ncbi_organism_name: Enterovibrio nigricans

ncbi_strain_identifiers: CAIM 661

ncbi_submitter: CIAD, A.C.


ncbi_isolation_source: porcine tonsil microbiota

ncbi_organism_name: Rothia nasimurium

ncbi_submitter: Wageningen University and Research


ncbi_strain_identifiers: Sponselee

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira borgpetersenii;x__Leptospira borgpetersenii serovar Hardjo-bovis;x__Leptospira borgpetersenii serovar Hardjo-bovis str. Sponselee


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Odense University Hospital


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: EPFL


ncbi_country: Japan: Takasaki

ncbi_isolation_source: brewery sewage

ncbi_organism_name: Cellulosimicrobium cellulans

ncbi_submitter: Peking University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: MI

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Germany

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: JLU


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: Maribacter luteus

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_strain_identifiers: FDAARGOS 1453

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: Newcastle

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: University of Queensland


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: SC


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: India


ncbi_country: Bangladesh

ncbi_organism_name: Escherichia coli P0304816.14

ncbi_submitter: IGS


ncbi_assembly_name: Rumen uncultured genome RUG11557

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Lancefieldella rimae


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: Vibrio metschnikovii

ncbi_submitter: China CDC


ncbi_country: Sweden: Gothenborg

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_organism_name: Exiguobacterium profundum

ncbi_strain_identifiers: ATCC BAA-333

ncbi_submitter: Cultivarium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium profundum


ncbi_organism_name: Providencia manganoxydans

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter bizzozeronii

ncbi_submitter: University of Antwerp, Belgium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: United Kingdom

ncbi_isolation_source: fecal sample

ncbi_organism_name: Weissella paramesenteroides

ncbi_submitter: University of Surrey


ncbi_country: Pakistan

ncbi_isolation_source: diseased leaf veins

ncbi_organism_name: Bacillus safensis

ncbi_strain_identifiers: sami

ncbi_submitter: Hope Genomics


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Alteromonadaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: University of Oxford


ncbi_country: Russia: Novosibirsk region

ncbi_isolation_source: oil-polluted soil

ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: National Research Center "Kurchatov Institute"


ncbi_country: South Korea

ncbi_organism_name: Escherichia coli NCCP15658

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Spain

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: HOSPITAL UNIVERSITARIO REINA SOFIA DE CORDOBA


ncbi_country: China: East China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_isolation_source: terrestrial

ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Madurai Kamaraj University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cepheid


ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Panama: Bocas del Toro; Punta Caracol

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: Stony Brook University


ncbi_country: USA: Geneva; Illinois

ncbi_isolation_source: water statue

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: Stenotrophomonas sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: New York City

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus azizii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: Lincoln; Arkansas

ncbi_isolation_source: proximal left tibia

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UNIVERSITY OF ARKANSAS


ncbi_assembly_name: Salmonella enterica CVM N47718 v1.0

ncbi_country: USA: NM

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: Brazil

ncbi_isolation_source: Cloacal Swab

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: USA: WA

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: faecal


ncbi_organism_name: Microbacterium paraoxydans

ncbi_submitter: University of Dhaka


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus W45747

ncbi_submitter: Broad Institute


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: South Korea: shellfish-growing area in Gangjin Bay

ncbi_isolation_source: seawater

ncbi_organism_name: Polaribacter gangjinensis

ncbi_submitter: GEOMAR Helmholtz Center for Ocean Research Kiel


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Elioraea sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: Lactobacillus johnsonii


ncbi_assembly_name: Vibrio cholerae G_298 Guinea

ncbi_strain_identifiers: G_298 Guinea

ncbi_submitter: URMITE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor;x__Vibrio cholerae O1 biovar El Tor str. N16961


ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Streptococcus peroris

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Russia: Kazan

ncbi_isolation_source: feces from HP_003

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: Rumen uncultured genome RUG335

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Shanghai

ncbi_isolation_source: Cooling tower water

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_organism_name: Pseudomonas syringae group sp. J254-4

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__unclassified Pseudomonas syringae group;s__Pseudomonas syringae group sp. J254-4


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Agroscope


ncbi_country: China: Hangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_organism_name: Nitrosomonas nitrosa

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Butyricimonas faecihominis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Escherichia coli

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Butyricicoccaceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Japan

ncbi_isolation_source: excrement

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Rakuno Gakuen University


ncbi_organism_name: Nocardioides zeae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Kunshan

ncbi_isolation_source: activated sludge

ncbi_organism_name: Paragemmobacter kunshanensis

ncbi_submitter: Rhodobacter translucens HX-7-19


ncbi_isolate: Acetobacterium bakii genome

ncbi_organism_name: Acetobacterium bakii

ncbi_strain_identifiers: Acetobacterium bakii genome

ncbi_submitter: Korea Advanced Institute of Science and technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_country: South Africa

ncbi_isolation_source: gecko droppings

ncbi_submitter: UKZN


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Zhejiang

ncbi_isolation_source: caecum

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Streptomyces violaceus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_country: Viet Nam: Nam Dinh

ncbi_isolation_source: Environment

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Escherichia coli


ncbi_country: Russia: Irkutsk

ncbi_isolation_source: cervical

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Federal Medical and Biological Agency SRI of Physical-Chemical Medicine


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Akkermansiaceae bacterium UBA1009

ncbi_submitter: University of Queensland


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Vibrio coralliirubri

ncbi_submitter: STATION BIOLOGIQUE DE ROSCOFF


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Victivallis sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: gut

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_submitter: Institute of Experimental Medicine


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_organism_name: Desulfobacteraceae bacterium UBA2174


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: urban industrial factory reactor residue

ncbi_organism_name: Pseudidiomarina indica

ncbi_submitter: Fudan University


ncbi_organism_name: Gemmatimonadales bacterium UBA1125


ncbi_isolation_source: unknown

ncbi_organism_name: Paramuribaculum intestinale


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Zhengzhou

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Henan University of Animal Husbandry and Economy


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Pennsylvania State University


ncbi_isolation_source: lake water

ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_country: Australia: Victoria

ncbi_isolation_source: Bile of chicken infected with Spotty Liver Disease

ncbi_organism_name: Campylobacter hepaticus

ncbi_submitter: RMIT University


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 207

ncbi_organism_name: Staphylococcus cohnii

ncbi_strain_identifiers: SNUC 1036

ncbi_submitter: University of Calgary


ncbi_country: Turkey: Mugla

ncbi_isolation_source: kidney

ncbi_organism_name: Chryseobacterium sp. C-204

ncbi_submitter: Erciyes University


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sciensano


ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Phage Research Center, Liaocheng University


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: USA: Pensacola; Florida

ncbi_isolation_source: sandy soil contaminated with coal tar creosote

ncbi_organism_name: Sphingomonas paucimobilis

ncbi_submitter: Monash University Malaysia


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: USA: Florida; Ramrod Key

ncbi_organism_name: Solwaraspora sp. WMMD792

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Portugal: Ria de Aveiro; Aveiro

ncbi_organism_name: Salinicola lusitanus

ncbi_submitter: Universidade de Aveiro


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii 11126

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China: Zhejiang

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_country: Spain: Barcelona

ncbi_isolation_source: water sample

ncbi_organism_name: Mycolicibacterium brumae

ncbi_submitter: Uppsala University


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: SponGES


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Candidatus Arcticimaribacter sp.

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Candidatus Arcticimaribacter;x__unclassified Candidatus Arcticimaribacter;s__Candidatus Arcticimaribacter sp.


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_organism_name: Arthrobacter rhombi

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Aeromonas schubertii

ncbi_submitter: Chulalongkorn University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Phototrophicaceae bacterium


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yantai University


ncbi_submitter: Zhejiang University


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Verrucomicrobia bacterium UBA3624

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium UBA3624


ncbi_isolation_source: water

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Streptomyces sp. NPDC050523

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Ruthenibacterium lactatiformans


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Coprobacillus sp. AM29-13

ncbi_submitter: BGI


ncbi_country: Italy: PA Bolzano

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Azienda Sanitaria dell'Alto Adige


ncbi_country: USA: Massachusetts

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: China: Shandong

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. MB04B

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: WA

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Washington


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Trichococcus flocculiformis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Atlantic Ocean

ncbi_isolation_source: A demosponge isolated at 971 m depth

ncbi_organism_name: Micromonospora tulbaghiae

ncbi_submitter: University of Bristol


ncbi_country: Portugal: Azores Island; Espalamaca (Faial)

ncbi_isolation_source: shallow hydrothermal vent

ncbi_organism_name: Alcanivorax sp. VBW004

ncbi_submitter: Palkalaiperur


ncbi_organism_name: Chlamydia trachomatis RC-J/971

ncbi_submitter: Oregon State University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Gemella haemolysans

ncbi_submitter: EMG


ncbi_country: Spain: Asturias

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: Germany: Freising

ncbi_organism_name: Anaerosalibacter bizertensis

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_country: USA: MS

ncbi_isolation_source: Finger wound

ncbi_organism_name: Staphylococcus aureus DAR3870


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: North-West University


ncbi_country: China: Anhui

ncbi_isolation_source: chicken meat products

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Kentucky

ncbi_submitter: Yangzhou University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Micrococcaceae bacterium Sec5.8

ncbi_submitter: Universidad Autonoma de Chile


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Blautia obeum


ncbi_organism_name: Neisseria leonii

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Georg-August-University Goettingen


ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: University of Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Opitutus sp. GAS368

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: USA: Pennsylvania; Centralia

ncbi_organism_name: Chlamydiia bacterium

ncbi_submitter: Michigan State University


ncbi_isolation_source: Small intestine

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Washington


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA

ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: environmental surface

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: Urinary Tract

ncbi_organism_name: Klebsiella sp. HMSC16A12

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Spain

ncbi_isolation_source: Hospital Universitario Gregorio Maranon (Madrid)

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: CNAG-CRG


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Virginia

ncbi_isolation_source: JAMMSM wastewater treatment plant

ncbi_organism_name: Candidatus Brocadia sp.

ncbi_submitter: Northeastern University

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;x__unclassified Candidatus Brocadia;s__Candidatus Brocadia sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal do Rio Grande do Sul


ncbi_country: Brazil: Iranduba

ncbi_isolation_source: leaf litter

ncbi_organism_name: Luteibacter sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Victivallis vadensis

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_genome_category: derived from environmental sample

ncbi_isolation_source: population genome bin extracted from metagenomes of a methanogenic wastewater treatment sludge

ncbi_organism_name: Candidatus Moduliflexus flocculans

ncbi_submitter: National Institute of Advanced Industrial Science and Technology (AIST)

ncbi_taxonomy: d__Bacteria;p__Candidatus Moduliflexota;c__Candidatus Moduliflexia;o__Candidatus Moduliflexales;f__Candidatus Moduliflexaceae;g__Candidatus Moduliflexus;s__Candidatus Moduliflexus flocculans


ncbi_organism_name: Gallionellaceae bacterium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Japan

ncbi_isolation_source: animal

ncbi_organism_name: Klebsiella pneumoniae subsp. ozaenae

ncbi_submitter: Toho University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. ozaenae


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Pseudorhodoplanes sp.

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Alberta

ncbi_isolation_source: cattle

ncbi_submitter: University of Idaho


ncbi_country: China: Yunnan; Jizi village

ncbi_organism_name: Yersinia pestis

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing , China


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the seqafrica consortium


ncbi_country: Spain: Santander

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: ITACYL


ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S019

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S019


ncbi_organism_name: Brachybacterium conglomeratum

ncbi_strain_identifiers: VKM Ac-1975

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Streptomyces sp. NRRL F-4711

ncbi_strain_identifiers: NRRL F-4711

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Shewanella sp. 5S214

ncbi_submitter: University of Vienna


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Greenland: Baffin Bay

ncbi_isolation_source: marine sediment

ncbi_organism_name: Desulfobacterales bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 5-63 micron fraction

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Kenya

ncbi_isolation_source: Slaughterhouse equipment

ncbi_organism_name: Enterococcus mundtii

ncbi_submitter: University of Zurich, Vetsuisse Faculty


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_organism_name: Asaccharospora irregularis DSM 2635


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Bowdeniella nasicola

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Korea Research Institue of Bioscience a


ncbi_country: New Zealand

ncbi_isolation_source: Diphtheritic lesion

ncbi_organism_name: Corynebacterium sp. 20A

ncbi_submitter: Northumbria University


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Chile: Santiago

ncbi_submitter: University of Maryland, Baltimore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Cyanobium sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Morganella sp. (in: enterobacteria)

ncbi_submitter: China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Morganella;x__unclassified Morganella (in: enterobacteria);s__Morganella sp. (in: enterobacteria)


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China: Xiaoping Island; Dalian; Liaoning

ncbi_organism_name: Streptomyces sp. S063

ncbi_submitter: Dalian University of Technology


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Methylotenera sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: EMG


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Streptomyces sp. NBC_00203

ncbi_submitter: Technical University of Denmark


ncbi_country: Romania: Movile Cave

ncbi_isolation_source: Lower gallery with a lake; inside a wall diverticulum; 1 m above the cave floor

ncbi_organism_name: Sporichthyaceae bacterium

ncbi_submitter: Faculty of Biology and Geology, Babes-Bolyai University of Cluj-Napoca


ncbi_country: Canada: Manitoba

ncbi_organism_name: Actinobacillus suis

ncbi_submitter: Western College of veterinary Medicine, University of Saskatchewan


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Russia: near Moscow

ncbi_organism_name: Acetobacterium fimetarium

ncbi_submitter: National Energy Technology Laboratory | Leidos


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D10_bin-0682

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;x__environmental samples;s__uncultured Candidatus Berkelbacteria bacterium


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: India: Maharashtra; Pune

ncbi_isolation_source: Pus

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Dr. D. Y. Patil Medical College and Hospital, Pimpri, Pune

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Acidithiobacillus sp. CV18-2

ncbi_submitter: Fundacion Ciencia y Vida


ncbi_country: Arctic Ocean

ncbi_isolation_source: Chukchi Sea

ncbi_organism_name: Pseudoalteromonas aliena

ncbi_submitter: Yonsei University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: cattle feces

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Undibacterium curvum

ncbi_submitter: Iowa State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Malawi

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Canada: Lacombe

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Rhizobiaceae bacterium UBA3138

ncbi_submitter: University of Queensland


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Los Alamos National Lab


ncbi_organism_name: Photorhabdus khanii

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: EMG


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: University of Chicago


ncbi_country: China: Wuliangshan; Yunnnan Province

ncbi_organism_name: Streptomyces sp. CB02009

ncbi_submitter: The Scripps Research Institute


ncbi_country: China

ncbi_isolation_source: Urology Surgery

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Guangzhou Medical University


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Fujian Inspection and Research Institute for Product Quality, China


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA:Highgate Springs; VT

ncbi_isolation_source: freshwater

ncbi_organism_name: Acidimicrobiaceae bacterium UBA2093


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_country: Nigeria

ncbi_isolation_source: Clinical wounds

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Igbinedion University Okada


ncbi_country: Thailand: Trang

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Clostridium butyricum

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_strain_identifiers: STEC 3055

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: Israel

ncbi_isolation_source: mastitis

ncbi_submitter: Heriot-Watt University


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile DA00211

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Japan:Wakayama; Wakagawa

ncbi_isolation_source: Activated sludge

ncbi_organism_name: Kocuria sp. NBRC 114282

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Kocuria;x__unclassified Kocuria;s__Kocuria sp. NBRC 114282


ncbi_country: USA: Wolcott; NY

ncbi_isolation_source: milk

ncbi_organism_name: Mycoplasmopsis arginini

ncbi_submitter: National Research Council (CNR)


ncbi_country: Italy

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Australia: Brisbane

ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: The University of Queensland


ncbi_organism_name: Nereida ignava

ncbi_submitter: EMG


ncbi_organism_name: Bulleidia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_country: Spain: El Castell de Guadalest (Alicante)

ncbi_isolation_source: xylem tissue branch

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: XF-ACTORS


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Methylopila sp. M107

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia

ncbi_isolation_source: 3 replicate cellulose-degrading anaerobic digesters sampled at day 96 and day 362

ncbi_organism_name: Clostridiales bacterium Firm_05

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: lesion site (lung) of a dead turkey with colibacillosis

ncbi_organism_name: Escherichia coli APEC O1

ncbi_strain_identifiers: APEC O1

ncbi_submitter: Iowa State University


ncbi_isolate: SPRUCE 477

ncbi_organism_name: Bacteroidales bacterium

ncbi_strain_identifiers: SPRUCE 477

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: CSF


ncbi_organism_name: Arthrobacter pityocampae

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Bacillus cereus

ncbi_submitter: University of Zurich


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Cupriavidus sp.

ncbi_submitter: University Bourgogne Franche-Comte, INRAE, Institut Agro Dijon


ncbi_submitter: Forman Christian College (A Chartered University)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas chlororaphis group;s__Pseudomonas chlororaphis;sb__Pseudomonas chlororaphis subsp. aurantiaca


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Roseovarius sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Thermoleophilaceae bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Barnesiella sp.


ncbi_organism_name: uncultured Thermoleophilia bacterium


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Streptomyces sp. NPDC014376

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Actinomycetota bacterium


ncbi_organism_name: Flavobacterium sp.


ncbi_organism_name: Haemophilus sp. HN_Hi17

ncbi_submitter: Hunan Children's hospital


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: UIUC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Nitrosomonas halophila

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_assembly_name: Rumen uncultured genome RUG727

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Opitutia bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Sutterella wadsworthensis


ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: Ghent University


ncbi_organism_name: Streptomyces anulatus


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: gut

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Basel


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: California; Calistoga

ncbi_organism_name: Nitrospirota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_isolation_source: Caecum

ncbi_organism_name: Lactococcus lactis


ncbi_organism_name: Staphylococcus caeli

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 14 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_country: Sweden

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: DTU


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Nostocoides sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Gemmiger qucibialis


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Comamonas sp. lk

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Spain: Alicante

ncbi_isolation_source: 0.22 micron fraction from Freshwater Reservoir Amadorio

ncbi_organism_name: Proteobacteria bacterium UBA964

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA964


ncbi_country: China: Suzhou

ncbi_organism_name: Intestinimonas butyriciproducens

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_country: Canada

ncbi_isolation_source: environmental watersal

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Gallionellaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Gansu

ncbi_isolation_source: yak milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Achromobacter sp. HNDS-1

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Bacteriovoracaceae bacterium

ncbi_submitter: EMG


ncbi_country: Thailand: Phayao

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Arkansas for Medical Sciences


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium pseudodiphtheriticum

ncbi_submitter: Duke University


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA180

ncbi_submitter: Broad Institute


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Hospital Infantil de Mexico Federico Gomez


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate ramp bioreactor

ncbi_organism_name: Alphaproteobacteria bacterium 43-37


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Taiwan

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Chthoniobacter sp.


ncbi_organism_name: Yersinia bercovieri

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Japan

ncbi_isolation_source: lung

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: University of Illinois


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Brown University


ncbi_organism_name: Vibrio sp. S234-5

ncbi_submitter: Health Canada


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China

ncbi_isolation_source: chicken

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Ryaniibacteriota;s__Candidatus Ryanbacteria bacterium RIFCSPHIGHO2_02_FULL_45_17b


ncbi_isolation_source: Faeces


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;x__unclassified Spiroplasma;s__Spiroplasma endosymbiont of Tipula paludosa


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Pakistan

ncbi_isolation_source: alcohol foam dispenser in hospital intensive care unit

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Campylobacter fetus

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: University of Texas at Austin


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_submitter: NTNU


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_country: Netherlands: Utrecht

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: Broad Institute


ncbi_assembly_name: freshwater MAG --- Loc090519-8m_bin-1917

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom: Colne estuary

ncbi_isolation_source: sediment

ncbi_organism_name: Mycobacterium sp. AT1

ncbi_submitter: University of East Anglia


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: freshwater

ncbi_organism_name: Umezakia ovalisporum TAC611

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Anaerotruncus colihominis


ncbi_assembly_name: Rumen uncultured genome RUG14491

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: The University of Melbourne


ncbi_organism_name: Candidatus Limivicinus sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limivicinus;x__unclassified Candidatus Limivicinus;s__Candidatus Limivicinus sp.


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_isolation_source: sewage

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Xanthomonas hortorum pv. hederae

ncbi_strain_identifiers: WHRI 7747

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Zambryskiibacteriota;x__unclassified Candidatus Zambryskiibacteriota;s__Candidatus Zambryskiibacteriota bacterium


ncbi_isolate: AOP28_A2_surf _bin _10

ncbi_organism_name: Moraxellaceae bacterium

ncbi_strain_identifiers: AOP28_A2_surf _bin _10

ncbi_submitter: Genoscope


ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NCTR/US FDA


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Jeongeupia naejangsanensis

ncbi_submitter: Roma Tre University


ncbi_submitter: Center for Microbial Communities


ncbi_country: Singapore

ncbi_organism_name: Acinetobacter baumannii


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Atopobium sp.


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA: Decatur; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Denmark: Bjergmarken

ncbi_isolation_source: activated sludge from Bjer_18-Q3-R1-45

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_submitter: Leibniz Institute of Photonic Technology (IPHT)


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: Psychrobacter faecalis


ncbi_country: China: Shenzhen

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Shenzhen People's Hospital


ncbi_isolation_source: water

ncbi_organism_name: Vibrio sp. 7-5(1-a)

ncbi_submitter: IMR


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EBI


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: SCOPE


ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: University of Copenhagen


ncbi_country: Russia: Biruzovoe Lake; Ukok Plateau; Altai Republic

ncbi_organism_name: Rhodoferax sp. U11-2br

ncbi_submitter: NRC "Kurchatov Institute"


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Escherichia coli O25:H16

ncbi_submitter: CDC


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: freshwater MAG --- MJ120702A_bin-375

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Corallococcus sp. AB045

ncbi_submitter: Aberystwyth University


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Eubacteriaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H47224

ncbi_submitter: Broad Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Veillonella parvula


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Kofleriaceae bacterium


ncbi_country: Russia: Chazhemto settlement; Tomsk oblast

ncbi_isolation_source: 2.8-km deep subsurface aquifer

ncbi_organism_name: Syntrophothermus sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Jiaozhou Bay

ncbi_isolation_source: rusted steel wire rope

ncbi_organism_name: Bacillus sp. H15-1

ncbi_submitter: China University of Petroleum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. H15-1


ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_organism_name: Azonexus sp.

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: infection

ncbi_submitter: Washington University


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Washington


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_submitter: ProteonPharmaceuticals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Brachyspira sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: USA: Chapel Hill; North Carolina

ncbi_organism_name: Agrobacterium sp. 33MFTa1.1

ncbi_submitter: LBNL


ncbi_country: China: Hangzhou

ncbi_isolation_source: anal swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: itra-abdominal tract infection

ncbi_submitter: AstraZeneca


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Ulvibacter sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chthoniobacter flavus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Shapirobacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;x__unclassified Candidatus Shapirobacteria;s__Candidatus Shapirobacteria bacterium


ncbi_organism_name: Streptomyces sp. PA03-2a

ncbi_submitter: Oregon State University


ncbi_country: Antarctica: Horseshoe Island

ncbi_isolation_source: rock

ncbi_organism_name: Streptomyces sp. H39-S7

ncbi_submitter: Ondokuz Mayis University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Denmark

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli C639_08

ncbi_submitter: IGS


ncbi_country: USA: Georgia

ncbi_isolation_source: Chicken processing plant

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Texas Tech University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_country: Germany

ncbi_isolation_source: trachea

ncbi_organism_name: Bordetella avium

ncbi_submitter: amedes GmbH


ncbi_country: United Kingdom: Liverpool

ncbi_isolation_source: insect hemolymph

ncbi_organism_name: Candidatus Arsenophonus triatominarum

ncbi_strain_identifiers: ATi

ncbi_submitter: University of Liverpool


ncbi_assembly_name: Rumen uncultured genome RUG13180

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: Macerated stomach and hepatopancreas samples from shrimp. Samples were grown in TCBS and colonies purified on TSA plates according to morphology. Isolate was cultured in TCBS.

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Computational Biology and Microbial Ecology


ncbi_country: USA: Michigan

ncbi_isolation_source: School cold water tap

ncbi_organism_name: Legionella taurinensis

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_organism_name: Lysobacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Melioribacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Truepera sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: New Zealand: Dunedin

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Brucella abortus

ncbi_strain_identifiers: BER

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Dysosmobacter welbionis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Italy

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Calgary


ncbi_organism_name: Enterobacter hormaechei subsp. steigerwaltii

ncbi_submitter: JCVI


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_country: Switzerland

ncbi_isolation_source: milk sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Lausanne


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_assembly_name: Rumen uncultured genome RUG714

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA

ncbi_isolation_source: pasteurized milk

ncbi_organism_name: Paenibacillus sp. FSL R5-808

ncbi_submitter: Cornell University


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Netherlands

ncbi_isolation_source: mayonnaise

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: TIFN


ncbi_organism_name: uncultured Megamonas sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Mycoplasma sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Symbiodiniaceae culture

ncbi_organism_name: Allomuricauda sp. MMSF_3501

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Agroscope


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_submitter: University of Science and Technology of China


ncbi_country: South Korea: Jeju Island

ncbi_isolation_source: soil

ncbi_organism_name: Hymenobacter sp. BRD67

ncbi_submitter: Korea Atomic Energy Research Institute


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Ekhidna sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Leptospira interrogans serovar Canicola

ncbi_submitter: Research and Production Center for Microbiology and Virology


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Microbacterium sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: China Agricultural University


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: EMG


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Muenster


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: USA: Pennsylvania; Centralia

ncbi_submitter: Michigan State University


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Panama: Bocas del Toro; STRI Point

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Stony Brook University


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces of yak

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Segatella copri

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: SRCAMB


ncbi_organism_name: Clavibacter sepedonicus

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: University of East Anglia


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_submitter: INRA


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Sweden: Gullmar Fjord

ncbi_isolation_source: hypoxic fjord sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Kiel University


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: nasal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Huangshaping Lead-Zinc Mine; Hunan Province

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Netherlands: Breda

ncbi_isolation_source: Environment

ncbi_submitter: unverisity medical center groningen


ncbi_organism_name: Mycolicibacterium nivoides

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Malaysia

ncbi_isolation_source: pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 397

ncbi_submitter: SC


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Oregon State University


ncbi_isolation_source: human gut


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Taiwan

ncbi_organism_name: Azospirillum rugosum


ncbi_organism_name: Escherichia coli

ncbi_submitter: Leiden University/Institute of Biology Leiden