ncbi_isolation_source: stool

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo;x__Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


gtdb_representative: f

ncbi_assembly_level: Scaffold

ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Jena

ncbi_isolation_source: rectal swab neonate

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Jena University Hospital


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri 2a

ncbi_submitter: Academy of Military Medical Sciences


ncbi_assembly_name: Rumen uncultured genome RUG14496

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Butyricicoccus sp.


gtdb_type_species_of_genus: t

ncbi_organism_name: Petrotoga miotherma DSM 10691

ncbi_refseq_category: reference genome

ncbi_submitter: University of Alberta

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;o__Petrotogales;f__Petrotogaceae;g__Petrotoga;s__Petrotoga miotherma;x__Petrotoga miotherma DSM 10691

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Escherichia coli

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Netherlands

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_organism_name: Peptoniphilus duerdenii


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Henan

ncbi_isolation_source: liver

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces murinus

ncbi_submitter: University of Melbourne


ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: University of Liege


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Ruzzini Lab


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZLSLER


ncbi_organism_name: Anaplasmataceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Moskow Lomosonov State University


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Desulfonatronospira sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_country: Malaysia

ncbi_isolation_source: bile

ncbi_organism_name: Aeromonas hydrophila 116

ncbi_submitter: University of Malaya


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured Paludibacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Klebsiella variicola


ncbi_country: Spain: Loriguilla Reservoir; Valencia

ncbi_isolation_source: freshwater biome

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_country: Tanzania: Dar es Salaam

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bergen


ncbi_organism_name: Bacillus sp. NRRL B-14911

ncbi_submitter: The Gordon and Betty Moore Foundation Marine Microbiology Initiative

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. NRRL B-14911


ncbi_isolation_source: respiratory

ncbi_organism_name: Klebsiella pneumoniae MGH 29

ncbi_strain_identifiers: MGH 29

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae MGH 29


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_strain_identifiers: LT2 KO STM1558

ncbi_submitter: University of California at Davis


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_isolation_source: dried distillers grain

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA-CVM


ncbi_organism_name: Pseudoxanthomonas mexicana


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Novimethylophilus sp.

ncbi_submitter: Zhejiang University


ncbi_country: Argentina

ncbi_isolation_source: urine

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Paraburkholderia bannensis

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Desulfomonilia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Brazil:Padre Bernardo; GO

ncbi_isolation_source: clay soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Embrapa Genetic Resources and Biotechnology


ncbi_country: Lebanon

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Lebanese American University


ncbi_organism_name: Micromonospora sp. NPDC049836

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_organism_name: Caldicellulosiruptor obsidiansis OB47

ncbi_submitter: US DOE Joint Genome Institute


ncbi_organism_name: Streptomyces sp. NBC_00645

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Greece

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Mailhella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Spain: El Arraiche field; Gulf of Cadiz

ncbi_isolate: Se-Cadez

ncbi_isolation_source: gill tissue

ncbi_organism_name: Solemya elarraichensis gill symbiont

ncbi_strain_identifiers: Se-Cadez

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;s__Solemya elarraichensis gill symbiont


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudoalteromonas sp.

ncbi_submitter: EMG


ncbi_organism_name: [Kitasatospora] papulosa


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Universita' degli Studi di Milano


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Burkholderia sp. RS01

ncbi_submitter: Rutgers University


ncbi_country: China: Jiangsu

ncbi_isolation_source: Intestinal tract

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou university


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Heilongjiang province

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Parapedobacter sp. SGR-10

ncbi_submitter: Beijing Academy of Agriculture and Forestry Science


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Paraburkholderia sp. SIMBA_054

ncbi_submitter: SIMBA


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediments

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Ocean University of China - Yushan Campus


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces sp. NPDC096351

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: uncultured Beijerinckiaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_isolate: AOP35_03H_surf _bin _24

ncbi_organism_name: Sphingobacterium sp.

ncbi_strain_identifiers: AOP35_03H_surf _bin _24

ncbi_submitter: Genoscope


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Acetobacteroides sp.

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: Pseudomonas sp. D1-1

ncbi_submitter: KAUST


ncbi_organism_name: Anaerobutyricum hallii


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of the Punjab


ncbi_submitter: University of Minnesota


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Environmental Science and Research


ncbi_organism_name: uncultured Verrucomicrobiales bacterium


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Novosphingobium gossypii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: International Space Station

ncbi_isolation_source: PROTECT experiment; Tray 1; Comp 2; UV layer

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coriobacteriia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Ornithinimicrobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Shallow soil patches nearby Vellozia epidendroides specimens

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Marinilabiliales;f__Marinilabiliaceae;g__Saccharicrinis;s__Saccharicrinis fermentans;x__Saccharicrinis fermentans DSM 9555 = JCM 21142


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: France: Languedoc-Roussilon

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Erwinia sp. MYb416

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Martelella sp. UBA3392

ncbi_submitter: University of Queensland


ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_country: South Korea: Geojedo

ncbi_isolation_source: seawater

ncbi_organism_name: Kangiella geojedonensis

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea: Jinju

ncbi_isolation_source: throat swab

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Biomin Research Center


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen


ncbi_country: Hong Kong

ncbi_isolation_source: Shek Wu Hui WWTPs_116 WWTPs influent

ncbi_organism_name: Shigella flexneri

ncbi_submitter: The University of Hong Kong


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: soil from Brazilian tropical mangrove

ncbi_organism_name: Blastopirellula marina

ncbi_strain_identifiers: Hex-1 MGV

ncbi_submitter: University of Sao Paulo


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Atopobiaceae bacterium


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Saprospirales bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Veillonellaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Sichuan

ncbi_isolation_source: swine farm

ncbi_organism_name: Providencia vermicola

ncbi_submitter: sichuan university


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Porphyromonas sp. COT-290 OH860

ncbi_submitter: UC Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;x__unclassified Porphyromonas;s__Porphyromonas sp. COT-290 OH860


ncbi_organism_name: uncultured Mycoplasmatales bacterium


ncbi_country: USA: MO

ncbi_isolation_source: urine

ncbi_submitter: Broad Institute


ncbi_organism_name: Vibrio tubiashii

ncbi_submitter: University of Connecticut


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: screen

ncbi_submitter: Wellcome Sanger Institute


ncbi_submitter: National Medicines Institute


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Polynucleobacter sp.


ncbi_country: USA

ncbi_isolation_source: plant environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Texas Tech University


ncbi_country: Mexico: California Gulf

ncbi_isolation_source: sea sediment

ncbi_organism_name: Plantactinospora sp. BC1

ncbi_submitter: Escuela Nacional de Ciencias Biologicas, Instituto Politecnico Nacional


ncbi_organism_name: Stenotrophomonas sp.


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Geodermatophilaceae bacterium

ncbi_submitter: Monash University


ncbi_country: USA: Arizona

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Streptomyces griseus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: Gloeotrichia echinulata CP02

ncbi_organism_name: Gloeotrichia echinulata CP02

ncbi_submitter: Oregon State University


ncbi_organism_name: Bordetella parapertussis


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Kofleriaceae bacterium

ncbi_submitter: EPFL


ncbi_country: USA: MN

ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: human gut

ncbi_organism_name: Dialister invisus

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M005S1

ncbi_submitter: Universite de Montreal


ncbi_country: China

ncbi_isolation_source: conjugation assay

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ruijin hosipital


ncbi_assembly_level: Chromosome

ncbi_organism_name: Alistipes shahii WAL 8301

ncbi_submitter: metaHIT

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes shahii;x__Alistipes shahii WAL 8301


ncbi_submitter: National Livestock&Fisheries Development Program

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Wuzhishan Nature Reserve; Hainan

ncbi_isolation_source: root

ncbi_organism_name: Streptomyces ardesiacus

ncbi_submitter: Chinese Academy of Tropical Agricultural Sciences


ncbi_country: Ethiopia: Amhara; North Gondar

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: EMG


ncbi_country: Switzerland: Basel

ncbi_isolation_source: clinical sample

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Limosilactobacillus oris

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Weissella confusa


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: French Guiana: Petit Saut

ncbi_isolation_source: termite gut

ncbi_organism_name: Candidatus Fibrimonadaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;c__Fibrobacteria;o__Candidatus Fibrimonadales;f__Candidatus Fibrimonadaceae;s__Candidatus Fibrimonadaceae bacterium


ncbi_organism_name: Streptococcus sp.


ncbi_country: Finland

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: University of Helsinki


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: Zhejiang

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_strain_identifiers: NNAb 2480

ncbi_submitter: NNIIEM name acad.I.N. Blokhina


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Burkholderiales bacterium UBA954

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Staphylococcus epidermidis VCU125

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Mesorhizobium sp. M0159

ncbi_submitter: Washington State University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Patient 11;Isolate 03

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Hoeflea sp.

ncbi_submitter: Ocean University of China


ncbi_country: China: Beijing

ncbi_isolation_source: ceacal content

ncbi_organism_name: Pseudoflavonifractor sp. 524-17

ncbi_submitter: Chinese Academy of Science


ncbi_country: Japan: Tokachi area; Obihiro

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: Laboratory of Food microbiology and Immunology


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: EMG


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California

ncbi_isolation_source: leaf litter

ncbi_organism_name: Curtobacterium sp. MCSS17_016

ncbi_submitter: University of California, Irvine


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: France: Rennes

ncbi_submitter: University of Rennes 1


ncbi_isolation_source: Hospital

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0178R

ncbi_submitter: Broad Institute


ncbi_country: Suriname: Nickerie

ncbi_isolation_source: Perineum

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: uncultured Glaciecola sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Plastorhodobacter daqingensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Segatella salivae

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Streptomyces sp. NPDC058427

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yangzhou University


ncbi_country: United Kingdom: England

ncbi_isolation_source: Tissue left fore d5

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liverpool


ncbi_isolation_source: Urinary Tract

ncbi_organism_name: Aerococcus sp. HMSC10H05

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: uncultured Cardiobacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: Subgingival dental plaque

ncbi_organism_name: Fusobacterium vincentii

ncbi_strain_identifiers: KCOM 2880

ncbi_submitter: Korean Collection for Oral Microbiology


ncbi_country: Canada: Crofton

ncbi_isolation_source: Woody debris ( hog fuel )

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of British Columbia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Jinhua Hospital of Zhejiang University


ncbi_organism_name: Streptomyces atacamensis


ncbi_organism_name: Chryseobacterium sp. SIMBA_029

ncbi_submitter: SIMBA


ncbi_country: Germany

ncbi_isolation_source: military dog fecal sample

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: EMG


ncbi_organism_name: Bacillus sp. JJ864

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. JJ864


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Poland: Katowice

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_organism_name: uncultured Adlercreutzia sp.


ncbi_country: China: Jiangsu

ncbi_isolation_source: rectum

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_country: Canada: British Columbia

ncbi_isolation_source: food processing environment

ncbi_organism_name: Listeria monocytogenes


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levybacteria bacterium RIFCSPHIGHO2_02_FULL_37_18


ncbi_assembly_name: IMG-taxon 2623620552 annotated assembly

ncbi_organism_name: Prevotella sp. tc2-28

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Alistipes communis


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Granulicella sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Dorea formicigenerans


ncbi_country: France

ncbi_isolation_source: curd (from farmer goat cheese)

ncbi_organism_name: Leuconostoc citreum

ncbi_strain_identifiers: CIRM-BIA 2095

ncbi_submitter: Brigham Young University


ncbi_organism_name: Nitrobacter sp.

ncbi_submitter: Nanyang Technological University


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Yanofskybacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yanofskyibacteriota;x__unclassified Candidatus Yanofskybacteria;s__Candidatus Yanofskybacteria bacterium


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Escherichia coli KTE14

ncbi_submitter: Broad Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Zhejiang

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter piscicola

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_submitter: European Institute of the Sea (IUEM) - France

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;x__environmental samples;s__uncultured Parcubacteria group bacterium


ncbi_country: Switzerland

ncbi_isolation_source: poultry

ncbi_submitter: University of Leicester


ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Stockholm University


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_assembly_name: Salmonella enterica CVM N51982 v1.0

ncbi_country: USA: LA

ncbi_isolation_source: Chicken Wings

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Staphylococcus pseudoxylosus

ncbi_submitter: Chung-Ang university


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: alpha proteobacterium HIMB114

ncbi_submitter: Universidad Miguel Hernandez

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__unclassified Pelagibacteraceae;s__alpha proteobacterium HIMB114


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Scalindua sp.

ncbi_submitter: The University of Melbourne

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__Candidatus Scalindua;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__Candidatus Scalindua;x__unclassified Candidatus Scalindua;s__Candidatus Scalindua sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human stool

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: USA: Lake Washington; Washington

ncbi_organism_name: Bosea sp. 117

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. 117


ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Nonlabens sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Finland

ncbi_organism_name: Staphylococcus aureus DAR126

ncbi_submitter: Broad Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China

ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Shewanella sp.

ncbi_submitter: University of Montana


ncbi_organism_name: Limnobacter sp.

ncbi_submitter: Tang lab


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecalis WKS-26-18-2

ncbi_submitter: The Genome Institute


ncbi_organism_name: Chlorobiota bacterium

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__unclassified Chlorobiota;s__Chlorobiota bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Leuconostoc lactis

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Sphingorhabdus sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Australia

ncbi_isolation_source: saliva

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of New South Wales


ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: Thailand: Lamphun

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Snodgrassella alvi


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Schaedlerella sp.


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Belarus: Minsk

ncbi_isolation_source: tomato

ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: Institute of Microbiology, National Academy of Sciences of Belarus


ncbi_organism_name: Bifidobacteriaceae bacterium MCC01984

ncbi_submitter: Moringa milk industry co., ltd.


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Fifth Affiliated Hospital of Southern Medical University


ncbi_country: China: Guangdong

ncbi_isolation_source: environment

ncbi_organism_name: Staphylococcus sp. GDQ8D216P

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium MD308


ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Russia: Yessentuki mineral water deposit

ncbi_isolation_source: groundwater

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_country: USA: Cambridge; MA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MIT


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: sputum

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Yangzhou University


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Bacteroidales bacterium UBA5281

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA5281


ncbi_organism_name: Staphylococcus sp. GDY8P31P


ncbi_country: USA: Cincinnati; Ohio

ncbi_isolation_source: drinking water

ncbi_organism_name: Sphingopyxis sp. H081

ncbi_submitter: US EPA


ncbi_assembly_name: Rumen uncultured genome RUG14314

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: SC


ncbi_organism_name: Metabacillus endolithicus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Pseudobacteriovorax sp.

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus sp. 27098_8_66

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_country: USA

ncbi_isolation_source: Surfaces of lower molars of Sprague Dawley rat

ncbi_organism_name: Streptococcus orisratti DSM 15617

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Xanthomonas campestris pv. centellae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy: d__Bacteria;p__Candidatus Deferrimicrobiota;c__Candidatus Deferrimicrobia;o__Candidatus Deferrimicrobiales;f__Candidatus Deferrimicrobiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Deferrimicrobiota;c__Candidatus Deferrimicrobia;o__Candidatus Deferrimicrobiales;f__Candidatus Deferrimicrobiaceae;x__unclassified Candidatus Deferrimicrobiaceae;s__Candidatus Deferrimicrobiaceae bacterium


ncbi_organism_name: Burkholderiales bacterium


ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Manilae;x__Leptospira interrogans serovar Manilae str. M874_LA0615_mutant


ncbi_country: China: Longshenao Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: USA: California

ncbi_isolation_source: well water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Bacteroides caccae


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Schleiferiaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Chifeng Center for Disease Control and Prevention


ncbi_organism_name: Sphingomonas paucimobilis

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Barnesiella sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Trinickia soli


ncbi_organism_name: Paenochrobactrum sp. BZR 588

ncbi_strain_identifiers: BZR 588

ncbi_submitter: Institute Cytology and Genetics SB RAS


ncbi_organism_name: Xanthomonas euroxanthea

ncbi_submitter: Centre for Functional Ecology - Science for People & the Planet


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_country: China

ncbi_isolation_source: desert regolith

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_isolation_source: groundwater

ncbi_organism_name: candidate division WWE3 bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium


ncbi_country: South Korea

ncbi_isolation_source: pig slaughterhouse chilling room wall

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: freshwater MAG --- Erken-D4_bin-1415

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: Argentina: Vila; Santa Fe

ncbi_isolation_source: first pond of the AUR serial dairy industry stabilization pond system

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: INTA


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Cupriavidus oxalaticus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_isolation_source: soil

ncbi_organism_name: Patescibacteria group bacterium UBA6033

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA6033


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_submitter: University of Tehran


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Denmark: Jytland

ncbi_isolation_source: Rectum

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Aarhus University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Paenarthrobacter aurescens

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Rothia sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Florida


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Seoul

ncbi_organism_name: Streptococcus canis

ncbi_submitter: Hallym University College of Medicine, Kangdong Sacred Heart Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: NSW

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology


ncbi_isolation_source: feces dairy cow (Bos taurus)

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Cerro;x__Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001680


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Thailand: Yasothon

ncbi_submitter: Ministry of Public Health-Thailand

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Bifidobacterium adolescentis ATCC 15703

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: France

ncbi_submitter: CHU de Bicetre


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter coli

ncbi_submitter: SC


ncbi_isolation_source: saliva

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: JCVI


ncbi_country: Spain: Madrid

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_country: Atlantic Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: Technical University of Denmark


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Brazil: MG; Sete Lagoas

ncbi_isolation_source: ear

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Embrapa Maize and Sorghum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Comenius University Science Park


ncbi_country: Netherlands

ncbi_organism_name: Neisseria meningitidis


ncbi_country: China: Jiangsu

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Yangzhou University


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Calgary


ncbi_country: China: Sichuan

ncbi_isolation_source: swine farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: sichuan university


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Haemophilus sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: EMG


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Luminiphilus sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Enterococcus faecalis VC1B-1

ncbi_submitter: The Genome Institute


ncbi_country: Australia: Sydney

ncbi_isolation_source: Influent wastewater

ncbi_submitter: University of New South Wales


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Parasporobacterium sp.

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: PREPARE (Platform foR European Preparedness Against (Re-)Emerging Epidemics, EU-FP7, # 602525


ncbi_organism_name: Negativicoccus succinicivorans

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: Rumen uncultured genome RUG501

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Comamonas sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Ares Genetics GmbH


ncbi_country: New Zealand

ncbi_isolation_source: low density polyethylene (LPDE) from waste management plant

ncbi_organism_name: Shewanella sp. SM102

ncbi_submitter: AgResearch


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D1_bin-1196

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-0303

ncbi_organism_name: uncultured Chitinophagaceae bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Aeromonas piscicola

ncbi_submitter: UCONNMISEQ


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: South Africa: KwaZulu-Natal region

ncbi_organism_name: Mycobacterium tuberculosis KZN V2475

ncbi_strain_identifiers: KZN V2475

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis KZN V2475


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F80354

ncbi_submitter: Broad Institute


ncbi_country: USA: Lake Ontario

ncbi_isolation_source: freshwater lake Midhypolimnion

ncbi_organism_name: Nitrosospira sp.

ncbi_submitter: University of Chicago


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_assembly_name: freshwater MAG --- Loclat_bin-01141

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Russia

ncbi_isolation_source: municipal sewage sludge

ncbi_organism_name: Stenotrophomonas chelatiphaga

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Malaysia

ncbi_isolation_source: sputum

ncbi_submitter: NATIONAL INSTITUTES OF HEALTH


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG738

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Fujian

ncbi_organism_name: Shewanella sp. FJAT-52076

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: USA: western arm Lake Superior

ncbi_isolation_source: freshwater cyanobacterial bloom

ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: University of Minnesota Duluth


ncbi_country: Australia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sydney


ncbi_organism_name: Mycoplasmopsis synoviae

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Costa Rica: La Selva Biological Station

ncbi_isolation_source: Sericomyrmex fungus garden

ncbi_organism_name: Paraburkholderia sp. Se-20369

ncbi_submitter: UW-Madison


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China

ncbi_isolation_source: seawater

ncbi_organism_name: Candidatus Pelagibacter sp. FZCC0015

ncbi_submitter: Fujian Agriculture and Forestry University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp. FZCC0015


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Erythrobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Germany

ncbi_isolation_source: Type II sourdough

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Alberta


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Nottingham Trent University


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Pseudonocardia sp.

ncbi_submitter: NIH/NHGRI


ncbi_submitter: National Centre for Cell Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum;sb__Candidatus Phytoplasma australasiaticum subsp. australasiaticum


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UNIVERSITY OF KWAZULU-NATAL


ncbi_organism_name: Neomoorella thermoacetica

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_country: USA: Ohio

ncbi_isolation_source: hospital shower hose biofilm

ncbi_organism_name: Dermacoccus sp. CCH2-D9

ncbi_submitter: U.S. Environmental Protection Agency


ncbi_country: French Guiana

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolate: VTEC

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: ISTITUTO SUPERIORE DI SANITA


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Alloscardovia omnicolens

ncbi_submitter: Loyola University Chicago


ncbi_country: Canada: Vancouver

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Lombardia e del Emilia Romagna (IZSLER)


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Synergistaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroides sp.


ncbi_country: United Kingdom: Aberystwyth

ncbi_isolation_source: throat

ncbi_organism_name: Fusobacterium necrophorum

ncbi_submitter: Cardiff Metropolitan University


ncbi_country: Australia: Brisbane

ncbi_organism_name: Prevotella sp.

ncbi_submitter: The University of Queensland


ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_organism_name: uncultured Oribacterium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Sphaerotilaceae;g__Roseateles;s__Roseateles chitosanitabidus;x__Mitsuaria chitosanitabida ATCC BAA-476 = NBRC 102408


ncbi_country: United Kingdom

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Candidatus Egerieousia sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Egerieousia;x__unclassified Candidatus Egerieousia;s__Candidatus Egerieousia sp.


ncbi_organism_name: Atlantibacter hermannii

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_organism_name: Anaerococcus vaginalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Mexico

ncbi_isolation_source: Nodule

ncbi_organism_name: Labrys sp. LIt4

ncbi_submitter: Instituto Politecnico Nacional

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Xanthobacteraceae;g__Labrys;x__unclassified Labrys (in: a-proteobacteria);s__Labrys sp. LIt4


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Desulfofustis sp.

ncbi_submitter: Monash University


ncbi_country: China: Beijing

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Beijing Ditan Hospital, Capital Medical University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Candidatus Limivicinus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limivicinus;x__unclassified Candidatus Limivicinus;s__Candidatus Limivicinus sp.


ncbi_organism_name: Methylobacterium oryzisoli

ncbi_submitter: Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation


ncbi_organism_name: uncultured Desulfobacterales bacterium


ncbi_organism_name: uncultured Spirochaetia bacterium


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: uncultured Prevotella sp.


ncbi_assembly_name: Rumen uncultured genome RUG14012

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: uncultured Phocaeicola sp.


ncbi_organism_name: Pseudomonas fragi

ncbi_submitter: South China Agricultural University


ncbi_country: Czech Republic: Pardubice region

ncbi_isolation_source: aborted fetus

ncbi_organism_name: Taylorella equigenitalis

ncbi_submitter: State Veterinary Institute Prague


ncbi_country: China: Shandong

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_isolation_source: Soft-skin infection or carrier

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Geogentics


ncbi_assembly_name: De novo assembly of KCRI isolate R0009_576

ncbi_isolation_source: wound swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0195R

ncbi_submitter: Broad Institute


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Cytobacillus horneckiae

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Rhizobium mongolense

ncbi_strain_identifiers: SEMIA 402

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Azospirillum sp.

ncbi_submitter: EBI


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: wound secretion

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: USA: New York; NY

ncbi_isolate: isolate

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Hydrogenovibrio thermophilus

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Chemisches und Veterinaeruntersuchungsamt Stuttgart


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: poultry meat product

ncbi_submitter: Bacteriology, Microbiology, Osaka Institute of Public Health


ncbi_country: South Korea: Anseong

ncbi_isolation_source: soil

ncbi_organism_name: Sphingobium agri

ncbi_submitter: Chung-Ang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Yunnan

ncbi_isolation_source: swine farm

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: sichuan university


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Switzerland: Lausanne

ncbi_isolation_source: gut tissue

ncbi_organism_name: Bombilactobacillus mellis

ncbi_submitter: University of Lausanne


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: South Korea: Jeju

ncbi_isolation_source: feces

ncbi_organism_name: Staphylococcus sp. B2-b

ncbi_submitter: Jeju National University


ncbi_organism_name: uncultured Blautia sp.


ncbi_country: Pacific Ocean: USA; Santa Monica Basin

ncbi_isolation_source: seep sediment enrichment culture

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: California Institute of Technology


ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Gemmobacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: uncultured Ramlibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NBC_00859

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_organism_name: Wolbachia endosymbiont of Drosophila barbarae

ncbi_submitter: University of Montana


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Antwerp


ncbi_organism_name: Bifidobacterium longum


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Klebsiella sp. WOUb02

ncbi_submitter: University of Oklahoma


ncbi_organism_name: Helcococcus ovis

ncbi_submitter: University of Florida


ncbi_organism_name: Prevotellaceae bacterium


ncbi_organism_name: Siphonobacter sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Lactobacillus delbrueckii subsp. allosunkii


ncbi_organism_name: Holophagaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Enterobacteriaceae bacterium


ncbi_organism_name: Burkholderiaceae bacterium


ncbi_organism_name: Dorea sp.


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: MSA University


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Alberta


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: groundwater

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_organism_name: Firmicutes bacterium AM41-5BH

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium AM41-5BH


ncbi_organism_name: Salmonella sp. NW42

ncbi_submitter: Sichuan University


ncbi_organism_name: Candidatus Fimisoma sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Fimisoma;x__unclassified Candidatus Fimisoma;s__Candidatus Fimisoma sp.


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Aeromonas allosaccharophila

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_assembly_name: Salmonella enterica CVM N51242 v1.0

ncbi_country: USA: CA

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_country: USA: MO

ncbi_isolation_source: yolk

ncbi_submitter: University of Missouri

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Helicobacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Germany: Jena

ncbi_isolation_source: Incubator

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Jena University Hospital


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Hemoculture

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto de Quimica


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_country: Switzerland

ncbi_isolation_source: soil

ncbi_organism_name: Xenorhabdus sp. IM139775

ncbi_submitter: University of Neuchatel


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Burkholderiaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: sputum

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: uncultured Enterococcus sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Curtissiibacteriota;s__Candidatus Curtissbacteria bacterium GW2011_GWA1_40_9


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: Venous Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: University of Exeter


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Demequina sp.

ncbi_submitter: Handley Lab, University of Auckland


ncbi_isolation_source: oral cavity; subgingival dental plaque

ncbi_submitter: Washington University Genome Center


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Paenibacillus polymyxa TD94

ncbi_submitter: China Agricultural University


ncbi_assembly_name: IMG-taxon 2615840540 annotated assembly

ncbi_organism_name: Streptomyces sp. ok210

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Candidatus Gemmiger stercorigallinarum

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;s__Candidatus Gemmiger stercorigallinarum


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_submitter: Alkek Center for Metagenomics and Microbiome Research, Baylor College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus gallolyticus;sb__Streptococcus gallolyticus subsp. gallolyticus;x__Streptococcus gallolyticus subsp. gallolyticus TX20005


ncbi_country: Argentina: Copahue volcano; Neuquen

ncbi_isolation_source: acidic geothermal sediment

ncbi_organism_name: Desulfotomaculum copahuensis

ncbi_submitter: CINDEFI


ncbi_organism_name: Serratia ficaria

ncbi_submitter: National Research Centre "Kurchatov Institute"


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: South Korea: Bigeum Island

ncbi_organism_name: Terrimesophilobacter mesophilus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Robert Koch Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: USA: WA

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Washington


ncbi_organism_name: Pedobacter duraquae


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_isolation_source: Mariane macroalgea Saccharina sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Zimbabwe

ncbi_isolation_source: Mahweu

ncbi_organism_name: Weissella cibaria

ncbi_submitter: University of Alberta


ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Anderseniibacteriota;x__unclassified Candidatus Anderseniibacteriota;s__Candidatus Andersenbacteria bacterium RIFCSPHIGHO2_12_FULL_45_11


ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Ares Genetics


ncbi_country: Sweden

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis


ncbi_country: Chile: Los Lagos

ncbi_organism_name: Tenacibaculum piscium

ncbi_submitter: Universidad Bernardo O`Higgigins


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: American Type Culture Collection (ATCC)


ncbi_organism_name: Alteromonas sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Rhizobium sp. BK650


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Kenya

ncbi_organism_name: Prevotella sp. UBA7592

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Listeria monocytogenes


ncbi_country: Pakistan

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Thermaerobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Thermaerobacter;x__unclassified Thermaerobacter;s__Thermaerobacter sp.


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_country: China: Haishan peninsula; Hepu Town; Guangxi

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Laboratory of Fish Disease


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Nitrosospira sp.

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA: Minnesota

ncbi_isolation_source: Rectal swab

ncbi_submitter: University of Minnesota


ncbi_organism_name: Serratia marcescens

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: Japan: Osaka

ncbi_organism_name: Segatella copri

ncbi_submitter: Research Institute for Microbial Diseases, Osaka University


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Kingella oralis


ncbi_country: Dominican Republic: Santo Domingo

ncbi_isolation_source: Ozama River

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Tecnologico de Santo Dominigo (INTEC)


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli KTE91

ncbi_submitter: Broad Institute


ncbi_country: Poland

ncbi_isolation_source: pellet

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_submitter: Sichuan University


ncbi_country: USA: Alaska; Fairbanks

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. TH08

ncbi_submitter: University of Alaska Fairbanks


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Canada

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus hirae 88-15-E09

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Jejubacter sp. L23

ncbi_submitter: Beijing institute of technology


ncbi_organism_name: Mixta sp. BE291

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Micrococcales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the Affiliated Hospital of Southwest Medical University


ncbi_country: China: Shanghai

ncbi_organism_name: Escherichia coli

ncbi_submitter: Shanghai Municipal Center for Disease Control & Prevention


ncbi_country: Laos

ncbi_isolation_source: rectal swab

ncbi_submitter: University of Bern


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: DOE JGI


ncbi_country: Japan

ncbi_organism_name: Mycobacterium paraintracellulare

ncbi_submitter: Niigata University School of Medicine


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-1289

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Immundisolibacter sp.

ncbi_submitter: National Research Council Canada


ncbi_organism_name: uncultured Geomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA

ncbi_strain_identifiers: Dcm;Dam

ncbi_submitter: New England Biolabs


ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: SIP-labeled bacteria involved in mucosal sugar uptake in the mouse colon

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Vienna


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_country: Switzerland


ncbi_organism_name: Bacillus paralicheniformis

ncbi_strain_identifiers: PBl 36

ncbi_submitter: ICAR-Central Agroforestry Research Institute


ncbi_isolation_source: terrestrial

ncbi_organism_name: Chryseobacterium sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: Bile

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: Japan: Hokkaido

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_organism_name: Flammeovirgaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Methylotenera sp.

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_organism_name: Bacillus cytotoxicus

ncbi_strain_identifiers: CVUAS 644

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Thailand

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptomyces sp. NPDC126933

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Complutense de Madrid


ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: PA

ncbi_isolation_source: intestine (Sus scrofa)

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Clearwater Reef; FL

ncbi_organism_name: Verrucosispora sioxanthis

ncbi_submitter: University of South Florida


ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: OHSU


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Paenimyroides viscosum

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: unknown

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Dialister invisus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Niabella yanshanensis

ncbi_submitter: University of Turku


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Washington


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Italy: Sardinia

ncbi_isolation_source: milk from clinical mastitis-infected mammaries

ncbi_organism_name: Streptococcus ruminantium

ncbi_submitter: Monash University


ncbi_submitter: University of Bergen


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Shahid Beheshti University


ncbi_country: USA: Yamhill County; Oregon

ncbi_organism_name: Rathayibacter sp. AY2B3

ncbi_submitter: Oregon State University


ncbi_country: Australia: Adelaide Hills; SA

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: California

ncbi_isolation_source: preputial swab

ncbi_organism_name: Mycoplasma zalophidermidis

ncbi_submitter: US FDA


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Clostridium thermopalmarium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_assembly_name: Rumen uncultured genome RUG12196

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: [Kitasatospora] papulosa

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2622736524 annotated assembly

ncbi_organism_name: Pedobacter suwonensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Psychrobacter sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Phyllobacterium ifriqiyense

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Mbandaka

ncbi_submitter: Sao Paulo State University-FCAVUnesp


ncbi_organism_name: uncultured Desulfobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany

ncbi_isolation_source: Intra-abdominale

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: SurvCARE


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_organism_name: Flavobacteriaceae bacterium UBA5968

ncbi_submitter: University of Queensland


ncbi_country: China: Zhoushan islands; East China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudalgibacter alginicilyticus


ncbi_country: USA: TX

ncbi_isolation_source: estuarine water

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_assembly_name: Rumen uncultured genome RUG10555

ncbi_organism_name: uncultured Succiniclasticum sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled pig faecal samples collected from floor of farm

ncbi_submitter: The REHAB Consortium


ncbi_assembly_name: IMG-taxon 2599185267 annotated assembly

ncbi_organism_name: Pseudoalteromonas denitrificans DSM 6059


ncbi_organism_name: Candidatus Pelagadaptatus aseana

ncbi_submitter: National University of Singapore


ncbi_country: Switzerland

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Proteus mirabilis


ncbi_organism_name: Streptomyces sp. E11-3

ncbi_submitter: Chongqing three gordes medical college


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidocella sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Nitrosopumilus sp.

ncbi_submitter: Tang lab


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC