ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Oceanicaulis sp.

ncbi_submitter: Tang lab


gtdb_representative: t

ncbi_organism_name: Atribacterota bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_level: Scaffold

ncbi_country: China: Tibet; Nyingchi

ncbi_isolation_source: Turnip soil

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Rainer Borriss's shared submissions


ncbi_organism_name: Streptomyces californicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Sysuimicrobium tengchongense

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Sysuimicrobium;s__Candidatus Sysuimicrobium tengchongense

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Sysuimicrobium;s__Candidatus Sysuimicrobium tengchongense


ncbi_country: Japan: Wakayama

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: National Agriculture and Food Research Organization (NARO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Veillonella sp.


ncbi_country: Mali

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: USA: SD

ncbi_isolation_source: porcine ileum

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


gtdb_type_species_of_genus: t

ncbi_country: China

ncbi_isolation_source: ocean sediment

ncbi_organism_name: Actinomarinicola tropica

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: SCSIO 58843

ncbi_submitter: south china sea institute of oceanology

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_country: China: Beijing

ncbi_isolation_source: vaginal

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Hong Kong

ncbi_organism_name: Ruegeria sp. HKCCE3926

ncbi_submitter: Chinese University of Hong Kong


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: addis ababa university


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: cold seep

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Macinerneyibacteriota;x__unclassified Candidatus Mcinerneyibacteriota;s__Candidatus Mcinerneyibacteriota bacterium


ncbi_organism_name: Hydrogenobacter sp.

ncbi_submitter: Saraswanti Genomics Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Kerfeldbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kerfeldiibacteriota;x__unclassified Candidatus Kerfeldbacteria;s__Candidatus Kerfeldbacteria bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Brown University


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: marine

ncbi_submitter: University of Queensland


ncbi_country: France

ncbi_isolation_source: stool

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: CHU de Bordeaux


ncbi_country: Canada: Lacombe

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Lebanon: Beirut

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Lebanese American University


ncbi_organism_name: Enterococcus faecalis


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Segatella salivae

ncbi_submitter: EMG


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Universidad de Sonora


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis 29755

ncbi_submitter: USDA/ARS/NADC


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 12 - depth 47m

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: uncultured Halioglobus sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: the seqafrica consortium


ncbi_country: Pacific Ocean

ncbi_organism_name: Vagococcus penaei

ncbi_submitter: Kyung Hee University


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Oxford


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_country: Canada: British Columbia

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas translucens pv. translucens

ncbi_submitter: Ottawa Research and Development Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas translucens;x__Xanthomonas translucens pv. translucens


ncbi_country: USA:Riverside; California

ncbi_organism_name: Xylella fastidiosa subsp. morus

ncbi_submitter: USDA


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Verrucomicrobiia bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: Czech Republic

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CEITEC VFU


ncbi_organism_name: Holdemanella biformis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Tunisia: Zahrouni

ncbi_isolation_source: bovine meat 1

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO/REQUIMTE. Faculdade de Farmacia. Universidade do Porto.


ncbi_isolation_source: Factory - Heating

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Surrey


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: China: Zhejiang

ncbi_isolation_source: asymptomatic patient

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Loyola University Chicago


ncbi_country: China: Anhui; Wuhu

ncbi_isolation_source: sediment

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Deinococcaceae bacterium

ncbi_submitter: University of South Africa


ncbi_organism_name: Burkholderia pseudomallei S13

ncbi_submitter: TIGR


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: INRAE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_country: Pakistan

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Romania

ncbi_organism_name: Mycobacterium tuberculosis 3067CJ

ncbi_submitter: Broad Institute


ncbi_isolation_source: Nasal swab

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine water

ncbi_organism_name: Rheinheimera sp.

ncbi_submitter: Max planck institute for marine microbiology


ncbi_assembly_level: Chromosome

ncbi_country: Somalia

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Bundeswehr, Institute of Microbiology


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Desulfobaccales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Sterolibacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus cytotoxicus

ncbi_submitter: Ghent University


ncbi_organism_name: Streptomyces sp. NPDC058293

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Rickettsia conorii subsp. raoultii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia conorii;sb__Rickettsia conorii subsp. raoultii


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Indian Institute of Technology Jodhpur


ncbi_organism_name: Nonomuraea sp. NPDC003560


ncbi_organism_name: Thalassobaculaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured Caldisericota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Caldisericota/Cryosericota group;p__Caldisericota;x__environmental samples;s__uncultured Caldisericota bacterium


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Flagellimonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Sediminispirochaeta sp.


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_organism_name: Cellvibrionaceae bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: General Hospital of Ningxia Medical University


ncbi_organism_name: uncultured Cytophagia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;x__environmental samples;s__uncultured Cytophagia bacterium


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: China Agricultural University


ncbi_assembly_name: freshwater MAG --- Umea_bin-02880

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Candidatus Azotimanducaceae bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: Russia: Moscow; Winogradsky Institute of Microbiology

ncbi_isolation_source: lab-scale EBPR bioreactor

ncbi_organism_name: Candidatus Accumulibacter phosphatis

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;s__Candidatus Accumulibacter phosphatis


ncbi_country: Romania: Movile Cave

ncbi_isolation_source: Lower gallery with a lake; water-sediments interface (waterfront)

ncbi_organism_name: Chromohalobacter sp.

ncbi_submitter: Faculty of Biology and Geology, Babes-Bolyai University of Cluj-Napoca


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: Reunion

ncbi_isolation_source: lung

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_country: Brazil: Minas Gerais; Ouro Branco

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Oswaldo Cruz Institute


ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: soil

ncbi_organism_name: Lysinibacillus sphaericus

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_country: Canada: Val-d Or

ncbi_isolation_source: surface-sterilized gnotobiotic actinorhizal nodule; gnotobiotic speckled alder inoculated with speckled alder rhizosphere soil

ncbi_organism_name: Pseudomonas sp. Pse79

ncbi_submitter: Universite de Sherbrooke


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_isolate: Fecal samples

ncbi_strain_identifiers: Fecal samples


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Swedish University of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Nonomuraea muscovyensis

ncbi_submitter: Colorado State University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: EMG


ncbi_organism_name: Desulfobacteraceae bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodococcus sp.


ncbi_country: China: Zhejiang

ncbi_strain_identifiers: Y17 ramR

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Chicago


ncbi_country: Slovenia

ncbi_isolation_source: urethral swab

ncbi_submitter: Harvard T.H. Chan School of Public Health


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus AMMC6003

ncbi_submitter: Broad Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Brevifilum fermentans

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: ETT

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institute for medical research


ncbi_country: USA: Poamoho; Hawaii

ncbi_isolation_source: biochar-amended oxisol soil plot 8

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Arizona State University


ncbi_organism_name: Peptoniphilus tyrrelliae

ncbi_submitter: Institut Pasteur


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Escherichia coli KTE226


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Japan

ncbi_isolation_source: gastric biopsies

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: Lactobacillus gasseri


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Philippines

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: St. Luke's Medical Center


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Changping; Beijing

ncbi_isolation_source: 4-6 years old child with healthy oral

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_country: USA: CO

ncbi_isolation_source: milk bovine cow

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Sweden: Stockholm

ncbi_isolation_source: colon biopsy

ncbi_organism_name: Brachyspira aalborgi

ncbi_submitter: Karolinska Institutet


ncbi_country: Switzerland

ncbi_isolation_source: infected Rhododendron sp. leaf

ncbi_organism_name: Pseudomonas viridiflava UASWS0038

ncbi_submitter: University of Applied Science of Western Switzerland//Geneva


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Helicobacter ganmani

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Small intestine

ncbi_organism_name: Lactobacillus intestinalis


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes ABC020048541

ncbi_submitter: Broad Institute


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Collierbacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Collieribacteriota;x__unclassified Candidatus Collierbacteria;s__Candidatus Collierbacteria bacterium


ncbi_isolation_source: human sputum

ncbi_submitter: Osaka University


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: soil near hot spring

ncbi_organism_name: Hydrogenobacter thermophilus TK-6

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Alicante


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_submitter: Prince of Songkla University


ncbi_country: USA: VT

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Faeces


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_isolation_source: deep subsurface microcosm

ncbi_organism_name: uncultured Brevundimonas sp.

ncbi_submitter: VTT Technical Research Centre of Finland Ltd


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Brazil:Santa Catarina; Tijucas

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Phocaeicola vulgatus


ncbi_country: Australia: Queensland dairy property

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: University of Calgary


ncbi_country: China: Henan Province

ncbi_isolation_source: rhizosphere soil from Salvia miltiorrhiza

ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: China Academy of Chinese Medical Sciences


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0418R

ncbi_submitter: Broad Institute


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: river Ryck; Greifswald

ncbi_isolation_source: mud of eutrophic river

ncbi_organism_name: Magnetospirillum gryphiswaldense MSR-1

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_country: Spain: off the coast of Alicante

ncbi_isolate: MedPE-SW

ncbi_isolation_source: Mediterranean seawater enriched with a specific particulate matter

ncbi_organism_name: Lacinutrix sp. MedPE-SW

ncbi_strain_identifiers: MedPE-SW

ncbi_submitter: University Miguel Hernandez


ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: Norwegian University of Life Sciences, Faculty of Veterinary Medicine


ncbi_country: India: West Sikkim

ncbi_isolation_source: glacial stream

ncbi_organism_name: Pseudomonas frederiksbergensis

ncbi_submitter: CSIR-Institute of Himalayan Bioresource Technology


ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Kaftiobacteriaceae;g__Candidatus Calidihabitans;s__Candidatus Calidihabitans tengchongensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Kaftiobacteriaceae;g__Candidatus Calidihabitans;s__Candidatus Calidihabitans tengchongensis


ncbi_organism_name: Pectobacterium polaris

ncbi_submitter: Beijing Academy of Agriculture and Forestry Sciences


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Anhui Medical University; Beijing Institute of Microbiology and Epidemiology


ncbi_country: Belgium: Ghent

ncbi_isolation_source: plant

ncbi_organism_name: Paenibacillus planticolens

ncbi_submitter: Ghent University


ncbi_isolation_source: CSF


ncbi_organism_name: Ructibacterium sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: nasopharynx


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni


ncbi_organism_name: Georgenia faecalis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: India

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Institute for Research In Tuberculosis


ncbi_country: United Kingdom:England

ncbi_organism_name: Serratia marcescens


ncbi_country: Spain

ncbi_isolation_source: Intestine of a cow affected with catarrhal enteritis

ncbi_organism_name: Streptococcus entericus DSM 14446

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Quebec; Quebec

ncbi_isolation_source: Root nodule from soybean plant inoculated with root zone soil from Apios americana

ncbi_organism_name: Bradyrhizobium sp. 41S5

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Czech Republic: Zofinsky prales National Nature Reserve

ncbi_isolation_source: decomposing wood from intermixed hardwood and conifers

ncbi_organism_name: Enterobacterales bacterium

ncbi_submitter: Czech Academy of Science


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus avium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Clostridiales bacterium UBA2871

ncbi_submitter: University of Queensland


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_organism_name: Turicimonas muris

ncbi_submitter: EMG


ncbi_country: USA: Harvard Forest; Massachusetts

ncbi_organism_name: Citrobacter freundii


ncbi_organism_name: Peribacillus sp. FSL P2-0133

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Peribacillus;x__unclassified Peribacillus;s__Peribacillus sp. FSL P2-0133


ncbi_submitter: Jeonbuk National University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus warneri

ncbi_strain_identifiers: acror

ncbi_submitter: NHGRI/NIH


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_02_FULL_52_10


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Dialister invisus

ncbi_submitter: University of Chicago


ncbi_organism_name: Ktedonobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Rudaea sp.


ncbi_organism_name: Christensenella minuta

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Ningxia Medical University General Hospital


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Center for Bioinformatics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Peru: Amazonian viillage of Shimaa

ncbi_isolation_source: gastric antrum of Amerindian resident

ncbi_organism_name: Helicobacter pylori Shi112

ncbi_submitter: Dept. Molec. Microbiology, Washington University Medical School in Saint Louis


ncbi_submitter: Quadram Institutte


ncbi_country: Finland

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Nocardioides sp.

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_isolation_source: lake

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Leibniz Institute DSMZ


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: WTSI


ncbi_country: Australia: NSW

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Victivallaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: TX

ncbi_isolation_source: feces klipspringer (Oreotragus oreotragus)

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Eubacterium sp. CAG:180

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. CAG:180


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Jug Handle State Natural Reserve; Mendocino county; California; about 160 miles north of San Francisco

ncbi_isolation_source: soil; mineral horizon

ncbi_organism_name: Collimonas arenae

ncbi_submitter: University of California, Davis


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: France: Centre Hospitalier de Charleville

ncbi_organism_name: Enterococcus faecalis EnGen0234

ncbi_submitter: Broad Institute


ncbi_assembly_name: IMG-taxon 2595698205 annotated assembly

ncbi_organism_name: Parapedobacter luteus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Egypt: Alexandria

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of East Anglia


ncbi_country: China: Beijing

ncbi_isolation_source: Bronchoalveolar lavage fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China CDC


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Neomegalonema sp.

ncbi_submitter: marine college, shandong university


ncbi_country: France: Paris

ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: Hopital Robert-Debre, APHP


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZLSLER


ncbi_country: USA: Maui Island

ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_strain_identifiers: MICO

ncbi_submitter: University of California Merced

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: Massachusetts; Cambridge

ncbi_isolation_source: Cephalic recording chamber

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured bacterium


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; Guaymas Basin; Black smoker hydrothermal vent

ncbi_isolation_source: marine hydrothermal chimney wall TVG10

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Psychrobacter piscatorii

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Blastocatellia bacterium


ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Stenotrophomonas sp. CASM106

ncbi_submitter: Lebanese American university


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Hafnia paralvei

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Planctomyces sp.


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Gillisia hiemivivida

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Halopseudomonas sp. Lyrl_26

ncbi_submitter: Banaras Hindu University


ncbi_organism_name: Candidatus Nanosyncoccaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;x__unclassified Candidatus Nanosyncoccaceae;s__Candidatus Nanosyncoccaceae bacterium


ncbi_organism_name: Enterocloster aldenensis

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Sulfurospirillum sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Boston College


ncbi_organism_name: Polyangiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Rhodanobacter sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Candidatus Dasytiphilus stammeri

ncbi_submitter: Max Planck Institute for Chemical Ecology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Dasytiphilus;s__Candidatus Dasytiphilus stammeri


ncbi_submitter: Shanghai Veterinary Research Institute


ncbi_organism_name: Candidatus Evtepia faecigallinarum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Evtepia;s__Candidatus Evtepia faecigallinarum


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Burkholderia plantarii

ncbi_submitter: Seoul National University


ncbi_country: USA

ncbi_isolation_source: laboratory strain

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Birmingham


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_submitter: SC


ncbi_country: France

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Inserm


ncbi_organism_name: Pseudomonas auratipiscis

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia obeum

ncbi_submitter: University of Chicago


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: California

ncbi_organism_name: Rhodococcus sp. BP-261

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BP-261


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Italy

ncbi_isolation_source: duedonoscope instrument

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Campus Bio-medico of Rome


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Germany

ncbi_isolation_source: trachea

ncbi_organism_name: Bordetella avium

ncbi_submitter: amedes GmbH


ncbi_country: Gabon: Moyen-Ogooue

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus schweitzeri

ncbi_submitter: Public Health Ontario


ncbi_country: India: West Bangal

ncbi_isolation_source: sediment; arsenic ore

ncbi_organism_name: Fictibacillus arsenicus

ncbi_strain_identifiers: Con a;3

ncbi_submitter: Centre for Cellular and Molecular Biology


ncbi_country: Italy: Molveno (TN)

ncbi_isolation_source: water

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Andrelandia

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus agnetis

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_country: Colombia: Santander de Quilichao

ncbi_isolation_source: cassava fermentation tank

ncbi_organism_name: Veillonellaceae bacterium UBA5809

ncbi_submitter: University of Queensland


ncbi_country: Norway

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Edwardsiella ictaluri 93-146

ncbi_submitter: The Laboratory for Genomics and Microbiology


ncbi_organism_name: Holophagales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_strain_identifiers: KQ-FLOR

ncbi_submitter: University of Sao Paulo


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: sputum

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Brevibacterium sp.

ncbi_submitter: EMG


ncbi_country: USA: New York

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: University of Chicago


ncbi_organism_name: Micromonospora sp. CPCC 205371

ncbi_submitter: Institute of Medicinal Biotechnology Chinese Academy of Medical Sciences


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Australia: Tasmania

ncbi_isolation_source: Fish hatchery

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: The University of Queensland


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolate: feces

ncbi_submitter: INNER MONGOLIA MINZU UNIVERSITY


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Proximal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: middle ear

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI


ncbi_country: Netherlands

ncbi_isolation_source: bioreactor under electrogenic and nitrate-reducing conditions

ncbi_organism_name: Aggregatilineales bacterium

ncbi_submitter: Radboud University


ncbi_country: Japan:Hokkaido; Chitose; Lake Okotanpe

ncbi_isolation_source: Thioploca sample

ncbi_organism_name: Sulfuriferula multivorans

ncbi_strain_identifiers: TTN

ncbi_submitter: The Institute of Low Temperature Science, Hokkaido University


ncbi_isolation_source: human gut

ncbi_organism_name: Ruminococcus callidus


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus E1410


ncbi_isolation_source: environmental waters

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Photorhabdus sp. RM323S

ncbi_submitter: University of Neuchatel


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Waltera sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Spain

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_isolation_source: Faeces


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: RWTH Aachen University Hospital


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: EMG


ncbi_country: Pakistan

ncbi_organism_name: Brucella melitensis BG2 (S27)


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Universidad Andres Bello


ncbi_country: China

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine, Zhejiang University


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Algae

ncbi_organism_name: Hoyosella sp. YIM 151337

ncbi_submitter: Yunnan University


ncbi_country: United Kingdom: University of Surrey; Guildford

ncbi_organism_name: Candidatus Scatousia excrementipullorum

ncbi_submitter: Quadram Institutte

ncbi_taxonomy: d__Bacteria;p__;c__;o__;f__;g__Candidatus Scatousia;s__Candidatus Scatousia excrementipullorum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;g__Candidatus Scatousia;s__Candidatus Scatousia excrementipullorum


ncbi_isolation_source: Egg house

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Argentina

ncbi_isolation_source: abdomen

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Novato city on Marin county

ncbi_isolation_source: Abscesses in liver; lung; colon

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Flavobacteriaceae bacterium UBA7413

ncbi_submitter: University of Queensland


ncbi_country: China: Kunming

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Laboratory Department of Affiliated Hospital of Yunnan University


ncbi_country: USA: DC

ncbi_isolation_source: Stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Ethiopia: Amhara

ncbi_isolation_source: Health Facility

ncbi_organism_name: Mycolicibacterium fortuitum

ncbi_submitter: Bahir Dar University


ncbi_assembly_name: Rumen uncultured genome RUG11157

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Murmansk

ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_submitter: RARI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_assembly_name: freshwater MAG --- MJ120730A_bin-184

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Defluviitaleaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolate: AOP18_A1_surf _bin _24

ncbi_organism_name: Glutamicibacter arilaitensis

ncbi_strain_identifiers: AOP18_A1_surf _bin _24

ncbi_submitter: Genoscope


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Anqing First People's Hospital of Anhui Medical University


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Paenarthrobacter nicotinovorans

ncbi_submitter: Zhejiang university


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_assembly_name: Rumen uncultured genome RUG10157


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Streptomyces populi

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces of yak

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Mycolicibacterium sp. BK634

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Washington State

ncbi_isolation_source: soda lake

ncbi_organism_name: Alkalitalea saponilacus

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_isolate: Bacteroides uniformis CECT 77711

ncbi_organism_name: Bacteroides uniformis

ncbi_strain_identifiers: Bacteroides uniformis CECT 77711

ncbi_submitter: Nutrition & Health


ncbi_organism_name: Thioalkalivibrio sp. ALE20


ncbi_isolation_source: tundra soil

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: University of Helsinki

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 133

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Enterococcus faecalis EnGen0336

ncbi_submitter: Broad Institute


ncbi_country: Colombia: Ovejas

ncbi_isolation_source: anthropogenic environmental material [ENVO:0010001]

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: Universidad Nacional de Colombia


ncbi_organism_name: Sandaracinaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Portugal: Lisbon area

ncbi_isolation_source: Conjunctiva

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: ATCC


ncbi_organism_name: Flavobacterium beibuense

ncbi_submitter: Ocean University of China


ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_submitter: University of California, Berkeley


ncbi_country: Canada

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Public Health Agency of Canada


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: China: Nanjing

ncbi_submitter: college of plant protection,Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pectobacteriaceae;g__Pectobacterium;s__Pectobacterium carotovorum;sb__Pectobacterium carotovorum subsp. carotovorum;x__Pectobacterium carotovorum subsp. carotovorum PCCS1


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Universiti Teknologi Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Helicobacter sp. UBA3407


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Actinomyces culturomici

ncbi_submitter: EMG


ncbi_submitter: University of Alabama Birmingham


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: Urine (FREE)

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liverpool


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Erysipelothrix enhydrae


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: CA

ncbi_isolation_source: Raw cream

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: soil

ncbi_organism_name: Spartobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: California

ncbi_isolation_source: leaf litter

ncbi_organism_name: Curtobacterium sp. MCLR17_054

ncbi_submitter: University of California, Irvine


ncbi_country: Atlantic Ocean: Bermuda Atlantic Time Series BATS

ncbi_isolation_source: seawater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Exeter


ncbi_organism_name: uncultured Niastella sp.


ncbi_country: Italy

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: South Africa: Cape Recife

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of Wisconsin, Madison


ncbi_country: Canada: New Brunswick

ncbi_isolation_source: Imported/domestic retail Oyster

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: American Type Culture Collection (ATCC)


ncbi_country: China: Yunnan

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand

ncbi_isolation_source: Assam tea or Miang leaf

ncbi_organism_name: Floricoccus penangensis

ncbi_submitter: Chiang Mai University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Megasphaera elsdenii

ncbi_submitter: AAFC


ncbi_organism_name: Acutalibacter caecimuris

ncbi_submitter: shandong university


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Rhodospirillales bacterium


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Portugal: Guimaraes; Aldao

ncbi_isolation_source: forest soil

ncbi_organism_name: Pseudomonas sp. UMA643

ncbi_submitter: Universidade do Minho


ncbi_organism_name: bacterium

ncbi_submitter: Zhejiang University


ncbi_country: South Africa: University of Cape Town; Rondebosch

ncbi_isolation_source: Cyanide and thiocyanate bioreactor

ncbi_organism_name: Phenylobacterium sp. SCN 70-31

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_organism_name: Pedobacter sp. BAL39

ncbi_submitter: Moore Foundation


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: India: Chandigarh

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Guinea-Bissau

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_country: China: Shenzhen

ncbi_organism_name: Ruminococcus sp. AF18-22

ncbi_submitter: BGI


ncbi_organism_name: Bacillus cereus VD154

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus VD154


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical College


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWA2_45_14


ncbi_country: China: Chengdu

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Methylobacterium soli

ncbi_submitter: Yunnan University


ncbi_isolation_source: Sediment of an oilfield

ncbi_organism_name: Wenxinia marina DSM 24838

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Ningxia; Yinchuan

ncbi_isolation_source: Skin/soft tissue

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: Germany

ncbi_organism_name: Caedibacter taeniospiralis

ncbi_submitter: Saarland University


ncbi_submitter: IRCCS Fondazione Policlinico San Matteo


ncbi_isolation_source: infant food

ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: MHI 86

ncbi_submitter: TU Muenchen


ncbi_country: Tunisia

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax


ncbi_country: Mexico

ncbi_isolation_source: Heads

ncbi_organism_name: Leuconostoc sp. S50

ncbi_submitter: USDA-ARS-Beltsville Sustainable Perennial Crops Laboratory


ncbi_country: Tunisia: Mateur

ncbi_isolation_source: Chicken feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Faculdade de Farmacia, Universidad do Porto


ncbi_organism_name: Sanguibacter antarcticus


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA

ncbi_isolation_source: surface swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: Water column in the Pearl River Estuary

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Micrococcales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Norway

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SC


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: China: Guangzhou

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: Pakistan: Rawalpindi

ncbi_isolation_source: Soft tissues

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: university of cambridge


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: India: Kolkata

ncbi_isolation_source: Human gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Enterococcaceae bacterium UBA5115

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Chryseobacterium sp. SW-1

ncbi_submitter: Kangwon National University


ncbi_country: China: Tibet

ncbi_organism_name: Yersinia pestis

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Uganda


ncbi_organism_name: Raoultibacter sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: uncultured Geitlerinema sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Aliivibrio kagoshimensis

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Salmonella sp. s58079

ncbi_submitter: Zhejiang university


ncbi_organism_name: Sellimonas intestinalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptococcus thermophilus


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Waltera sp.


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_isolation_source: Sponge: Agelas oroides

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acinetobacter sp. UBA2531

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudooceanicola nitratireducens

ncbi_submitter: Tang lab


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R838;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Streptococcus agalactiae LMG 15085

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: India: Telangana; Patancheru

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: Denmark: South Greenland; Kap Hegh

ncbi_isolate: KAP bin82

ncbi_isolation_source: soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_strain_identifiers: KAP bin82

ncbi_submitter: Monash University


ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of the Witwatersrand


ncbi_country: China: Sichuan

ncbi_isolation_source: feces from chicken farm

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sichuan University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: China

ncbi_isolation_source: stool sample

ncbi_organism_name: Shigella flexneri Shi06GS37

ncbi_submitter: Chinese Center for Disease Control and Prevention (China CDC)


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EMG


ncbi_country: Canada: Lacombe

ncbi_organism_name: Prevotella sp.

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Papua New Guinea: D Entrecasteaux Islands

ncbi_isolation_source: PNG CO2 seep-control site

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Institute of Marine Science


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-224

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Burkholderiales bacterium

ncbi_strain_identifiers: new MAG-224

ncbi_submitter: Micoorganism


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG13521

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: Shenzhen people's hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Campylobacter concisus


ncbi_organism_name: Pseudomonas syringae pv. berberidis

ncbi_strain_identifiers: ICMP 8899

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. berberidis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University


ncbi_country: Brazil: Natal

ncbi_isolation_source: foot secretion

ncbi_submitter: Universidade de Sao Paulo


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: freshwater MAG --- YR_bin-0900

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_organism_name: Serratia marcescens

ncbi_submitter: McMaster University


ncbi_country: France: Besancon

ncbi_submitter: University Hospital of Besancon


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Punjab; Jalandhar

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: All India Institute Of Medical Science


ncbi_submitter: California Department of Public Health


ncbi_country: China: Yangzhou

ncbi_isolation_source: chicken meat

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_organism_name: Legionella pneumophila subsp. fraseri

ncbi_strain_identifiers: Lansing 3

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Coprococcus comes

ncbi_submitter: EMG


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rickettsiales bacterium


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Netherlands

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: Robert Koch Institute


ncbi_country: China: Fujian

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Chongqing Medical and Pharmaceutical College


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: Oil Springs; Ontario

ncbi_isolation_source: oil field site

ncbi_organism_name: Microbacterium foliorum

ncbi_submitter: University of Toronto-Scarborough


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Anaerolineaceae bacterium UBA4081

ncbi_submitter: University of Queensland


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: Enterococcus sp.

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China


ncbi_country: South Korea: Jeju; Mara Island

ncbi_organism_name: Actinomadura rupiterrae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_isolate: Hafnia alvei CIRM-BIA2828

ncbi_organism_name: Hafnia alvei

ncbi_strain_identifiers: Hafnia alvei CIRM-BIA2828

ncbi_submitter: INRAE


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: environmental

ncbi_organism_name: Microbacterium radiodurans

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_country: Finland: Kivijaervi

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute for Health and Welfare


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_isolation_source: Colon

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: AMSTERDAM UMC


ncbi_country: Australia: SA

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_country: Norway

ncbi_isolation_source: salmon processing facility

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_country: Mexico: Mexico City

ncbi_isolation_source: Gastric tissue

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Escuela Nacional de Ciencias Biologicas, Instituto Politecnico Nacional


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_country: Pakistan: Hattar Industrial Area; Haripur

ncbi_isolation_source: composite effluents

ncbi_organism_name: Staphylococcus sp. MB371

ncbi_submitter: Fatima Jinnah Women University


ncbi_organism_name: uncultured Acholeplasmataceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Treponema sp.


ncbi_country: China

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: USA: New York

ncbi_isolation_source: stool from individual AK

ncbi_organism_name: Segatella copri

ncbi_submitter: New York University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Lishizhenia tianjinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: France

ncbi_isolate: commensal strain from anonymous patient (individual 4)

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: UNIVERSITY OF OXFORD


ncbi_submitter: Jinhua Hospital of Zhejiang University


ncbi_country: South Korea: Seoul

ncbi_organism_name: Cellulosimicrobium sp. E22-2

ncbi_submitter: Korea University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Selenomonas sp.

ncbi_submitter: EMG


ncbi_country: USA: MS

ncbi_isolation_source: Urine

ncbi_organism_name: Staphylococcus aureus DAR3885

ncbi_submitter: Broad Institute


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: EPFL


ncbi_country: USA: Seattle

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4571_4 depth 0-3 cm

ncbi_organism_name: Thermotoga sp.

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_country: USA: New Hampshire

ncbi_isolation_source: descending colon brush

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of New Hampshire


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with avicel

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Zurich


ncbi_country: Brazil: Botucatu

ncbi_isolation_source: blood

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Klebsiella pneumoniae complex sp. WS992

ncbi_submitter: Center for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;x__unclassified Klebsiella pneumoniae complex;s__Klebsiella pneumoniae complex sp. WS992


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY HOHENHEIM


ncbi_assembly_name: freshwater MAG --- E-1_bin-192

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Salmonella sp. SKLX077943

ncbi_submitter: Zhejiang university


ncbi_country: Colombia: Antioquia

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Brevundimonas naejangsanensis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmatimonadales bacterium UBA6960

ncbi_submitter: concordia university


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Ilumatobacteraceae bacterium


ncbi_country: Tanzania

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Gungdong

ncbi_isolation_source: Wound secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Boston; MA

ncbi_isolation_source: tip

ncbi_organism_name: Staphylococcus aureus M0188

ncbi_submitter: Broad Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: Salmonella enterica

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Norway

ncbi_isolation_source: raw chicken

ncbi_organism_name: Pseudomonas sp. MF6755


ncbi_country: China: Guangxi

ncbi_isolation_source: plant

ncbi_organism_name: Jiella mangrovi

ncbi_submitter: Life sciences Institute


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Synechococcus sp. SB0676_bin_10

ncbi_submitter: University of Queensland


ncbi_country: Portugal: Grandola; Herdade da Barroca da Serra

ncbi_isolation_source: forest soil

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Universidade do Minho


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Acidisphaera sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0368R


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Yersinia frederiksenii Y225

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Streptomyces koyangensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: cold seep

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_assembly_name: freshwater MAG --- KR4_bin-0028

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Thailand: Thung Chang

ncbi_isolation_source: termite gut

ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Porphyromonas loveana


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_organism_name: Clostridium sp.


ncbi_organism_name: Staphylococcus aureus M0306

ncbi_submitter: Broad Institute


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Coriobacteriia bacterium


ncbi_country: Estonia: Tartu

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: Chile

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter sp. CFSAN093247

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Oribacterium asaccharolyticum

ncbi_submitter: EMG


ncbi_organism_name: uncultured Chitinophaga sp.


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: California; Lower Lake

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Germany: Brandenburg; Erpe River

ncbi_isolation_source: urban river

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Italy: Sardinia

ncbi_isolation_source: water

ncbi_organism_name: Leptospira sp. 96542

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Sardegna


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Colorado

ncbi_isolation_source: fecal swab female ferret; 4 months old

ncbi_organism_name: Clostridiales bacterium


ncbi_country: China: Tengchong county; Yunnan; BF2

ncbi_isolation_source: Hot spring sediment

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: Other (pancreas secretion)

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Morganella morganii

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Rhizobium laguerreae

ncbi_strain_identifiers: CECT 8280

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Catheter

ncbi_organism_name: Staphylococcus aureus


ncbi_country: USA: Hawaii

ncbi_isolation_source: laboratory contaminant from a culture of Gloeobacter violaceus

ncbi_organism_name: Pseudonocardia alni

ncbi_submitter: University of Hawaii at Manoa


ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: metabat2_XCR1_HET_7840_bwa.102 MAG

ncbi_strain_identifiers: metabat2_XCR1_HET_7840_bwa.102 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas hortorum;x__Xanthomonas hortorum pv. carotae;x__Xanthomonas hortorum pv. carotae str. M081


ncbi_country: Hong Kong

ncbi_isolation_source: Shatin WWTPs_24 WWTPs effluent

ncbi_organism_name: Shigella flexneri

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Rhodoplanes sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Flavobacteriales bacterium


ncbi_country: Brazil: Eastern Amazon

ncbi_isolation_source: pasture soil

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Center for Nuclear Energy in Agriculture - University of Sao Paulo


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Israel

ncbi_isolation_source: mastitis

ncbi_organism_name: Escherichia coli

ncbi_submitter: Heriot-Watt University