ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus asini

ncbi_submitter: BGI-Shenzhen


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Acholeplasmatales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


gtdb_representative: f

ncbi_assembly_level: Scaffold

ncbi_organism_name: Salmonella enterica

ncbi_strain_identifiers: 13;HUMV 1

ncbi_submitter: University of Oviedo


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Acinetobacter junii

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: lake water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Prevotella sp.

ncbi_submitter: AAFC


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: New Hampshire

ncbi_isolation_source: descending colon aspirate

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: University of New Hampshire


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: EMG


ncbi_assembly_level: Complete Genome

ncbi_country: South Korea

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Calidifontibacillus erzurumensis

ncbi_submitter: University of Calgary


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Atlantic Ocean: Walvis Ridge Sector

ncbi_isolation_source: deep-sea sediment

ncbi_organism_name: Psychrobacter nivimaris

ncbi_strain_identifiers: LAMA 639

ncbi_submitter: Universidade do Vale do Itajai (UNIVALI)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_assembly_name: LM07425 assembly

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Klebsiella sp. 123336

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Malawi

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Australia

ncbi_isolation_source: 3 replicate cellulose-degrading anaerobic digesters sampled at day 96 and day 362

ncbi_organism_name: Phycisphaerales bacterium Planc_01

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Butyricicoccus sp.


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Acinetobacter baumannii TG27307

ncbi_submitter: Translational Genomics Research Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Dehalococcoidales bacterium


ncbi_assembly_name: Rumen uncultured genome RUG12026

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMBL-EBI


ncbi_country: Thailand:Nong Jum Rung

ncbi_isolation_source: Peat swamp forest soil

ncbi_organism_name: Streptomyces rugosispiralis

ncbi_refseq_category: reference genome

ncbi_submitter: Chulalongkorn university

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Florida


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_organism_name: Shewanella sp. AC91-MNA-CIBAN-0169

ncbi_submitter: University of Florence


ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_isolation_source: Caecum

ncbi_organism_name: Turicimonas muris


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Paraclostridium sordellii

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: University of Wisconsin-Madison


ncbi_submitter: University of North Carolina at Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. aesculi;x__Pseudomonas amygdali pv. aesculi str. 0893_23


ncbi_isolation_source: Sputum

ncbi_organism_name: Streptococcus sp. FDAARGOS_520

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: EBI


ncbi_country: Japan: Hokkaido

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Clostridium celatum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: Japan

ncbi_isolation_source: fecal material [ENVO:00002006]

ncbi_organism_name: Bifidobacterium catenulatum subsp. kashiwanohense

ncbi_submitter: Yakult Central Institute


ncbi_organism_name: Limosilactobacillus pontis

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: China: Zhejiang

ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: The First Affiliated Hospital of Medical College, Zhejiang University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Uganda: Bombo Military Hospital

ncbi_isolation_source: PUS

ncbi_submitter: Makerere University


ncbi_country: China: Changsha

ncbi_isolation_source: liver abscess

ncbi_submitter: Beijing genomics institute


ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Center for Genome Regulation (CRG)


ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Wroclaw University of Environmental and Life Sciences


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: Qingdao Agricultural University


ncbi_organism_name: uncultured Stakelama sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Pseudomonas sp. Ld6

ncbi_submitter: Station Biologique de Roscoff


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Landesbetrieb Hessisches Landeslabor (LHL)


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Chinese Academy of Fishery Sciences


ncbi_organism_name: Pyrinomonadaceae bacterium


ncbi_organism_name: uncultured Chitinophagales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;x__environmental samples;s__uncultured Chitinophagales bacterium


ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: University of Tennessee


ncbi_country: China: Anhui; Wuhu

ncbi_isolation_source: sediment

ncbi_organism_name: Bacillales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Hong Kong: Telegraph Bay

ncbi_isolation_source: soil

ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. 84-1004


ncbi_assembly_level: Chromosome

ncbi_country: Thailand

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Australia: Queensland

ncbi_organism_name: Campylobacter fetus subsp. venerealis

ncbi_submitter: QAAFI


ncbi_country: Pacific Ocean: South China Sea

ncbi_isolation_source: gut of hagfish from deep-sea

ncbi_organism_name: Ureaplasma sp. Hg2

ncbi_submitter: Chinese Academy of Sciences


ncbi_isolation_source: long-term freshwater anammox column reactor

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Environmental Preservation Engineering, Civil and Environmental Engineering, Hiroshima University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Canada: Calgary

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Massachusetts; Southampton

ncbi_organism_name: Erwinia amylovora

ncbi_strain_identifiers: MASHBO

ncbi_submitter: Michigan State University


ncbi_organism_name: Bacteroides hominis

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Klebsiella sp. GG_Kp140

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Universiteit Antwerpen


gtdb_type_species_of_genus: t

ncbi_organism_name: Fluviicoccus keumensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_submitter: Colorado State University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas mediterranea

ncbi_strain_identifiers: EDOX

ncbi_submitter: University of Groningen


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Kilo Moana Hydrothermal plume 60m

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Brevundimonas vancanneytii

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: WWTP Brno

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Washington University in Saint Louis


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_submitter: SC


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Stenotrophomonas pavanii


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Pipizella viduata


ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: University of Utah


ncbi_country: Ireland

ncbi_isolation_source: Sheep/Soil

ncbi_submitter: University College Dublin


ncbi_organism_name: Staphylococcus aureus M0986

ncbi_submitter: Broad Institute


ncbi_submitter: Stanford University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CHRU Besancon


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Neisseria sp.


ncbi_organism_name: Pseudomonas aeruginosa PA103

ncbi_submitter: University of Iowa


ncbi_country: Chile

ncbi_isolation_source: activated sludge of kraft-pulp mill effluents

ncbi_organism_name: Stenotrophomonas sp.

ncbi_submitter: Universidad Tecnologica Metropolitana (UTEM)


ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: China: Anhui; Wuhu

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Portugal

ncbi_isolation_source: Penile

ncbi_organism_name: Treponema pallidum subsp. pallidum

ncbi_submitter: National Institute of Health, Portugal


ncbi_isolation_source: Cystic Fibrosis Patients

ncbi_organism_name: Pandoraea pnomenusa

ncbi_submitter: University of Malaya


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Candidatus Woodwardiibium gallinarum

ncbi_submitter: EMG

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Woodwardiibium;s__Candidatus Woodwardiibium gallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Woodwardiibium;s__Candidatus Woodwardiibium gallinarum


ncbi_country: Malaysia

ncbi_isolation_source: Gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Malaya-University of Western Australia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Dyella sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_isolation_source: houseflies

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Thailand: Roi-Et

ncbi_isolation_source: meat

ncbi_submitter: Faculty of Public Health


ncbi_isolation_source: frozen fish

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000201


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcaceae bacterium AM07-15

ncbi_submitter: BGI


ncbi_country: Australia

ncbi_isolation_source: urine

ncbi_organism_name: Staphylococcus felis

ncbi_submitter: University of Melbourne


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: China Agricultural University


ncbi_country: Canada: Toronto

ncbi_isolation_source: gut

ncbi_organism_name: Hominisplanchenecus murintestinalis

ncbi_submitter: University of Toronto


ncbi_country: USA: South Carolina

ncbi_isolation_source: pharyngeal mucosa

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Nitratireductor sp.


ncbi_assembly_name: Rumen uncultured genome RUG11690

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: China: Beijing

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Streptomyces sp. ISL-63

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep marine sediment

ncbi_organism_name: Alteromonas gracilis

ncbi_submitter: Second Institute of Oceanography, State Oceanic Administration


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_assembly_name: IMG-taxon 2595698211 annotated assembly

ncbi_organism_name: Alkalitalea saponilacus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Eubacterium ventriosum

ncbi_submitter: EMG


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Netherlands

ncbi_isolation_source: NPS

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: Karolinska Institutet


ncbi_assembly_name: Rumen uncultured genome RUG13582

ncbi_organism_name: uncultured Spirochaetaceae bacterium


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Tang lab


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_country: USA: Louisiana

ncbi_isolation_source: Moore swab

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Ontario

ncbi_isolation_source: Blood culture

ncbi_organism_name: Aureimonas altamirensis

ncbi_submitter: Public Health Ontario


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Pgalathea

ncbi_country: Chile: Canal Concepcion

ncbi_isolation_source: deep-sea polychaete

ncbi_organism_name: Pseudoalteromonas sp. S3431

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA

ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium


ncbi_country: Southern Ocean: Indian Sector

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: The University of Burdwan


ncbi_country: South Korea: Bundang

ncbi_isolation_source: adult feces

ncbi_organism_name: Paenibacillus odorifer

ncbi_submitter: Korea Food Research Institute


ncbi_country: USA: Lincoln County; Oregon

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: Chthoniobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Adlercreutzia sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyushu University Graduate school of medical sciences, department of Bacteriology


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Flavobacteriales bacterium UBA1995

ncbi_submitter: University of Queensland


ncbi_country: Indian Ocean: Northwest Indian Ocean

ncbi_organism_name: Gimesia maris

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: Kenya

ncbi_organism_name: Treponema sp. UBA6852


ncbi_country: South Korea

ncbi_isolation_source: Doenjang; fermented soybean paste

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Kangwon National University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Italy

ncbi_isolation_source: Blood Culture

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_country: Thailand

ncbi_isolation_source: stool


ncbi_isolation_source: metagenome

ncbi_organism_name: Candidatus Arthromitus sp. SFB-turkey

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Candidatus Neoarthromitus;x__unclassified Candidatus Neoarthromitus;s__Candidatus Arthromitus sp. SFB-turkey


ncbi_country: Malawi: Blantyre

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Portland State University


ncbi_country: China

ncbi_isolation_source: coal mine

ncbi_organism_name: Thermomonas carbonis

ncbi_submitter: Kyung Hee University


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: University of Bern


ncbi_organism_name: Borreliella bavariensis

ncbi_submitter: LMU Munich


ncbi_isolation_source: anal swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: USA: Missouri; St. Louis

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium avium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Clostridium sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Enterococcus sp. DIV1937

ncbi_submitter: Broad Institute


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Runella sp. CRIBMP

ncbi_strain_identifiers: CRIBMP

ncbi_submitter: University of Toledo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Spirosomataceae;g__Runella;x__unclassified Runella;s__Runella sp. CRIBMP


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Fibrobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Tibet Agricultural & Animal Husbandry University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Univeristy of South Australia


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Litoreibacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Netherlands: Mokbaai

ncbi_isolation_source: marine sediment

ncbi_organism_name: Candidatus Electrothrix gigas

ncbi_submitter: Aarhus University


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Alar crease Swab

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: USA:Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: 1-5 micron

ncbi_organism_name: Vibrio sp. F13

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Dysosmobacter welbionis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Clostridium saccharobutylicum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Helicobacteraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolate: Streptococcus mitis

ncbi_organism_name: Streptococcus mitis

ncbi_strain_identifiers: Streptococcus mitis

ncbi_submitter: UNIVERSITY COLLEGE LONDON


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Corynebacterium stationis

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Javiana


ncbi_organism_name: Shinella sp. M31

ncbi_submitter: University of British Columbia


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Paenibacillus sp. V4I7

ncbi_strain_identifiers: K16b V4I7


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Veillonellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_submitter: Zymo Research Corporation

ncbi_type_material_designation: assembly designated as neotype


ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: Auburn University


ncbi_organism_name: Dietzia maris

ncbi_submitter: Monash University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Ruminiclostridium sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA52

ncbi_submitter: Broad Institute


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0278


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_organism_name: Shigella flexneri

ncbi_submitter: Department of Bacteriology I, National Institute of Infectious Diseases


ncbi_country: China: Zhejiang

ncbi_isolation_source: caecum

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: Tissue SUPERFICIAL HUMERAL MEMBRANE AND SUTURE

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_country: Mongolia

ncbi_isolation_source: not applicable

ncbi_organism_name: Borrelia miyamotoi

ncbi_submitter: Joint Faculty of Veterinary Medicine, Yamaguchi University


ncbi_country: South Korea

ncbi_isolation_source: surface area of a building with less than 200 occupants

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Institut Pasteur Korea


ncbi_country: China: Jiangsu Province

ncbi_isolation_source: Coastal sediments

ncbi_organism_name: Hyphomonas sediminis

ncbi_submitter: Hohai Univercity


ncbi_assembly_name: R-75594 assembly

ncbi_organism_name: Burkholderia sola

ncbi_submitter: LM-UGent


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Guangdong; Qingyuan

ncbi_isolation_source: water

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: Pakistan

ncbi_isolation_source: alcohol foam dispenser in hospital intensive care unit

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: BGI-Shenzhen


ncbi_country: Antarctica: Prydz Bay

ncbi_isolation_source: Marine mud

ncbi_organism_name: Janibacter limosus

ncbi_submitter: Polar Research Institute of China


ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Methylobacterium sp. NPDC097043

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor silvarum


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Blautia faecicola


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: uncultured Acidiluteibacter sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_organism_name: Streptomyces goshikiensis


ncbi_organism_name: Capnocytophaga canimorsus

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Pseudoxanthomonas japonensis

ncbi_submitter: Xi'an University of Architecture and Technology


ncbi_organism_name: Butyricicoccus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolate: AOP42_C1_surf _bin _14

ncbi_organism_name: Canibacter sp.

ncbi_strain_identifiers: AOP42_C1_surf _bin _14

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Syntrophus sp.


ncbi_submitter: Xiamen University


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: USA: California; Calistoga

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Mollicutes bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Gordonibacter pamelaeae


ncbi_organism_name: Hamadaea flava

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Synechococcus sp.


ncbi_organism_name: Microcystis aeruginosa FACHB-524

ncbi_submitter: Institute of Hydrobiology


ncbi_organism_name: Gallibacterium anatis

ncbi_strain_identifiers: SCPM-O-B-13148 (Sever)

ncbi_submitter: SRCAMB


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: USA: California; Modesto

ncbi_organism_name: Deltaproteobacteria bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: PVC group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;x__unclassified PVC group;s__PVC group bacterium


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Wilmar International Limited


ncbi_country: Japan

ncbi_isolation_source: Soil from factory (dye work)

ncbi_organism_name: Paenarthrobacter ureafaciens

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Ligilactobacillus murinus


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: marine

ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: University of Queensland


ncbi_assembly_name: Salmonella enterica CVM 43809 v1.0

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_country: Germany: Mellum island

ncbi_isolation_source: marine microbial mat

ncbi_organism_name: Thiorhodovibrio winogradskyi

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Ruminiclostridium sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: USA: Dallas; Texas

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Texas at Dallas


ncbi_country: USA: Rifle; Colorado

ncbi_isolation_source: sediment at 5m depth

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;x__unclassified Sysuimicrobiota;s__Candidatus Sysuimicrobiota bacterium CSP1-3


ncbi_assembly_name: Rumen uncultured genome RUG14386

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Sarcina sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Environmental; soil

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Paramuribaculum intestinale


ncbi_isolate: AOP42_C1_surf _bin _3

ncbi_organism_name: Ruoffia tabacinasalis

ncbi_strain_identifiers: AOP42_C1_surf _bin _3

ncbi_submitter: Genoscope


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: bay water spring sample 30 PSU in less than .8 micron size fraction

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Clemson University


ncbi_isolation_source: root nodules

ncbi_organism_name: Rhizobium pisi

ncbi_submitter: North West Agriculture and Forestry University


ncbi_country: Brazil: Paraiba

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: LAPOA-Federal University of Paraiba (UFPB)


ncbi_organism_name: Stutzerimonas xanthomarina

ncbi_submitter: Ocean University of China


ncbi_organism_name: Balneola sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Mycolicibacterium helvum

ncbi_submitter: Department of Infection Metagenomics, Osaka University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain: Asturias

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_country: Chile

ncbi_isolation_source: egg poultry

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Chicago; Illinois

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Brazil: Braganca

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Cupriavidus sp. OTU4054

ncbi_submitter: The University of Chicago


ncbi_organism_name: Halobacillus sp. SY10

ncbi_submitter: Jiangxi Agricultural University


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Frankia sp. Cj3

ncbi_submitter: Center for Biotechnology, Bielefeld University


ncbi_country: Greece

ncbi_submitter: bioMerieux


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Chicago


ncbi_organism_name: Ezakiella sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Ezakiella;x__unclassified Ezakiella;s__Ezakiella sp.


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Mycobacteriaceae bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: Finland

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_country: USA: Chicago

ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_organism_name: Paenibacillus sp. Marseille-P2973

ncbi_submitter: IHU Genomes


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Sphingomonas sp. PvP015

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: organic material

ncbi_organism_name: Turicimonas muris

ncbi_submitter: Max von Pettenkofer-Institut


ncbi_country: USA: Massachusetts Department of Public Health

ncbi_isolation_source: Dessicated Chinese egg powder

ncbi_submitter: USDA-ARS-USMARC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Acetobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Shenzhen

ncbi_organism_name: Coprobacillus cateniformis

ncbi_submitter: BGI


ncbi_organism_name: Alloalcanivorax venustensis

ncbi_submitter: Tang lab


ncbi_country: Finland: near Lake Tiilikka

ncbi_isolation_source: freshwater; small river

ncbi_organism_name: Polynucleobacter sp. UB-Tiil-W10

ncbi_submitter: University of Innsbruck


ncbi_country: Panama: Bocas del Toro; STRI Point

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stony Brook University


ncbi_country: India

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_submitter: Translational Health Science and Technology Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA: Evanston

ncbi_isolation_source: biomass from a lab-scale sequencing batch reactor

ncbi_organism_name: Candidatus Accumulibacter phosphatis

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;s__Candidatus Accumulibacter phosphatis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hopital Bicetre


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oslo


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: diffuse vent DFF1

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. B2-9-1

ncbi_submitter: Curtin University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_country: France: Aquitaine

ncbi_isolation_source: Pork

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Derby

ncbi_submitter: ANSES


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: Gill chamber Rimicaris exoculata metagenome

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_isolation_source: CF patient

ncbi_organism_name: Cupriavidus sp. AU9028

ncbi_submitter: University of Michigan


ncbi_country: Canada: Toronto

ncbi_isolation_source: gut

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: University of Toronto


ncbi_country: USA: West Haven; CT

ncbi_isolation_source: gut tissue

ncbi_organism_name: Snodgrassella communis

ncbi_submitter: Yale University


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_organism_name: Helicobacter cinaedi

ncbi_submitter: Bacteriology, Basic Medicine, Kyushu University Faculty of Medical Sciences


ncbi_country: Australia: Adelaide Hills; SA

ncbi_isolation_source: feces

ncbi_organism_name: Prevotellaceae bacterium


ncbi_organism_name: uncultured Algoriphagus sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Brevibacillus choshinensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: China: Wuhan Medical Treatment Center; Hubei

ncbi_organism_name: Mycobacterium hubeiense

ncbi_submitter: Wuhan Polytechnic University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Brazil

ncbi_isolation_source: Raw Chicken

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Streptomyces sedi

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: OK

ncbi_isolation_source: antelope feces (Antilocapra americana)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China

ncbi_isolation_source: urine

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_country: China: Tataling River

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Aquabacterium sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__unclassified Aquabacterium;s__Aquabacterium sp.


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: CA

ncbi_isolation_source: environment


ncbi_organism_name: Pararcticibacter sp.


ncbi_organism_name: Lachnospirales bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Malaysia

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter soli

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Xylanibacter rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Viet Nam

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_organism_name: Mesorhizobium sp. Cs1299R1N3

ncbi_submitter: University of Pretoria


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Lithuanian University of Health Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaerotignum sp.


ncbi_country: USA: Alaska; Fairbanks

ncbi_organism_name: Peribacillus sp. TH24

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Bangladesh: Mymensingh

ncbi_isolation_source: Mud

ncbi_organism_name: Chromobacterium amazonense

ncbi_submitter: University of Dhaka


ncbi_organism_name: Cypionkella sp.


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_submitter: Universidad Nacional Mayor de San Marcos


ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: Nankai University


ncbi_isolation_source: sea water

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;x__environmental samples;s__uncultured Burkholderiales Genera incertae sedis bacterium


ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_organism_name: Bacillus sp. X1(2014)

ncbi_submitter: New England Biolabs

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. X1(2014)


ncbi_organism_name: Staphylococcus pseudoxylosus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Butyricimonas faecihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Denmark

ncbi_isolation_source: oral cavity of healthy male bear

ncbi_organism_name: Ursidibacter arcticus

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Mariane macroalgea Saccharina sp.

ncbi_organism_name: uncultured Granulosicoccus sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Hymenobacter frigidus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Liaoning

ncbi_isolation_source: shrimp paste

ncbi_organism_name: Lentibacillus panjinensis

ncbi_submitter: Dalian polytechnic University


ncbi_country: South Korea

ncbi_isolation_source: tidal flat

ncbi_organism_name: Pontibacterium granulatum

ncbi_submitter: Shandong University


ncbi_country: China: Luzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Affiliated Hospital of Southwest Medical University


ncbi_organism_name: Escherichia albertii

ncbi_submitter: Kurume University School of Medicine


ncbi_country: Germany: Hesse

ncbi_isolation_source: urine; catheter urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Justus-Liebig-University Giessen


ncbi_country: USA: WA

ncbi_organism_name: Neisseria lactamica

ncbi_submitter: University of Washington


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Xenorhabdus stockiae

ncbi_submitter: Nanjing Agriculture University


ncbi_country: China: Guangdong Province

ncbi_isolation_source: water from subtropical river stream

ncbi_organism_name: Undibacterium sp. LX40W

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Seoul National University College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacteroides;s__Mycobacteroides abscessus;sb__Mycobacteroides abscessus subsp. bolletii;x__Mycobacteroides abscessus subsp. bolletii 50594


ncbi_country: Belgium

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Parma


ncbi_country: China: Huizhou

ncbi_isolation_source: Tidal flat sediment

ncbi_organism_name: Qipengyuania pacifica

ncbi_submitter: Guangdong Academy of Sciences

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_assembly_name: freshwater MAG --- MJ130729A_bin-108

ncbi_organism_name: uncultured Geobacteraceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: University of Montreal


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Weissella viridescens

ncbi_submitter: European Bioinformatics Institute


ncbi_isolate: Listeria monocytogenes strain MB5

ncbi_organism_name: Listeria monocytogenes

ncbi_strain_identifiers: Listeria monocytogenes strain MB5

ncbi_submitter: Institute of Biotechnology, University of Helsinki


ncbi_organism_name: Arthrobacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Thiodiazotropha taylori

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Minnesota Department of Health Infectious Disease Laboratory Submission Group


ncbi_organism_name: Ideonella margarita

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejianglab


ncbi_country: Japan: Okinawa; Japan

ncbi_organism_name: Altererythrobacter ishigakiensis

ncbi_strain_identifiers: ATCC BAA-2084

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Subdoligranulum sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium GW2011_GWF2_39_17


ncbi_organism_name: Pseudooceanicola nitratireducens

ncbi_submitter: Xiamen University


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Oxford


ncbi_submitter: Life and Earth Sciences Institute (Including Health and Agriculture), PAULESI


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Jinhua Central Hospital


ncbi_country: Italy: Apulia; Bari

ncbi_isolation_source: blood

ncbi_submitter: University of Bari "Aldo Moro", Bari, Italy


ncbi_isolation_source: Human fecal samples

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: microbial pathogenic ecology group


ncbi_country: Spain

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Complutense de Madrid


ncbi_isolation_source: Hospital Universitario Central de Asturias (Oviedo)

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CNAG-CRG


ncbi_isolation_source: taro

ncbi_organism_name: Cronobacter dublinensis

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: freshwater MAG --- MJ3_bin-255

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Mesotoga prima

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Cellulosimicrobium sp. SJTW-1

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: Tidjanibacter sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Planktothrix sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_submitter: Univerza v Ljubljani, Biotehniska fakulteta


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Melbourne


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: USA

ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Atribacterota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, Jiangxi Medical College, Nanchang University


ncbi_organism_name: Spirochaetota bacterium


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Tongji University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University


ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Daping Hospital, The Army Medical University


ncbi_organism_name: Arsenophonus endosymbiont of Dermacentor nuttalli

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Colorado State University


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bacillales bacterium UBA1070

ncbi_submitter: University of Queensland


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Sponge: Agelas oroides

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bifidobacterium pullorum subsp. saeculare

ncbi_submitter: Veterinary Research Institute


ncbi_country: China: Zhejiang

ncbi_isolation_source: farm environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Xiamen University


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer

ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_country: China: Shenzhen

ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: BGI


ncbi_country: Belize: Mesoamerican Barrier Reef; Carrie Bow Cay

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Brazil

ncbi_isolation_source: Tracheal secretion

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: sea water

ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: BAL

ncbi_organism_name: Pseudomonas aeruginosa BWHPSA037

ncbi_submitter: Broad Institute


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Harvard University


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Chlorobiota bacterium

ncbi_submitter: Lab of Microbial Oceanography

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__unclassified Chlorobiota;s__Chlorobiota bacterium


ncbi_country: Portugal: Porto

ncbi_isolation_source: urine

ncbi_organism_name: Corynebacterium lehmanniae

ncbi_submitter: UCIBIO/REQUIMTE, Faculty of Pharmacy, University of Porto


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: wound on the leg

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Christensenellales bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10872

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Helicobacter japonicus


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Ulvibacter sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: to be completed

ncbi_organism_name: uncultured Mycobacterium sp.

ncbi_submitter: Genoscope CEA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella pneumoniae 280_1220

ncbi_submitter: JCVI


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: France

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minnesota


ncbi_assembly_name: freshwater MAG --- LaPlata-b_bin-0123

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Dorea longicatena

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: CA

ncbi_isolation_source: feces of cat named Danny from private home

ncbi_organism_name: Peptacetobacter sp.

ncbi_submitter: AnimalBiome


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Saprospiraceae bacterium


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_strain_identifiers: ATCC 9261

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Urbana;x__Salmonella enterica subsp. enterica serovar Urbana str. ATCC 9261


ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: University of Applied Sciences and Arts Western Switzerland


ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas sp. GD04019

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: sludge from a mesophilic anaerobic wastewater digester enriched on phosphite and carbon dioxide

ncbi_organism_name: Thermotogales bacterium EBM-19

ncbi_submitter: UC Berkeley


ncbi_country: Norway: Svalbard

ncbi_isolation_source: soil

ncbi_organism_name: Telluria aromaticivorans

ncbi_submitter: Seoul National University


ncbi_isolation_source: sputum

ncbi_organism_name: Achromobacter ruhlandii

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_isolation_source: feline cat lung

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Cecum

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: Church and Dwight


ncbi_organism_name: Campylobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Psychroserpens sp. Hel_I_66

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Providencia alcalifaciens

ncbi_submitter: Nanjing Agriculture University


ncbi_country: USA:Nine Springs Wastewater Treatment Plant; Madison Metropolitan Sewerage District; Dane County; Madison; WI

ncbi_isolation_source: laboratory-scale deammonification bioreactor inoculated with effluent from wastewater treatment plant

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: Woodland soil

ncbi_organism_name: Asanoa ferruginea

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: Japan:Ibaraki; Tsukuba city

ncbi_isolation_source: rumen

ncbi_organism_name: Prevotella lacticifex

ncbi_submitter: Advanced Analysis Center, National Agriculture and Food Research Organization


ncbi_country: Germany

ncbi_isolation_source: groin

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Enterococcus sp. C51

ncbi_submitter: Northwest A & F University


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Heidelberg University Hospital


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_strain_identifiers: LSK

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mexico

ncbi_submitter: CIAD-Mazatlan


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Brevibacterium sp.

ncbi_submitter: NIH/NHGRI


ncbi_country: Denmark

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA

ncbi_isolation_source: meat

ncbi_organism_name: Listeria innocua

ncbi_submitter: PulseNet USA


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Tang lab


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: NGH Pa1195

ncbi_submitter: King Abdullah University Science and Technology


ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Arenicellaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EMG


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus SCLE6035

ncbi_submitter: Broad Institute


ncbi_submitter: Center for Microbial Communities


ncbi_country: Brazil: Belo Horizonte;Pampulha lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M51BS1

ncbi_submitter: Universite de Montreal


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: UIUC


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacillus pacificus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Anaerotignum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces sp. NRRL WC-3604

ncbi_strain_identifiers: NRRL WC-3604

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Enterobacter kobei


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: South Korea: Nonsan

ncbi_isolation_source: Livestock Wastewater

ncbi_organism_name: Aquamicrobium sp. NLF2-7

ncbi_submitter: Nakdonggang National Institute of Biological Resources (NNIBR)


ncbi_organism_name: Bilophila wadsworthia


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: uncultured Agathobacter sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chinese People's Liberation Army General Hospital


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Center for Bioinformatics


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Brevibacillus panacihumi

ncbi_submitter: NCAUR-ARS-USDA


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: INSTITUT PASTEUR


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D3_bin-0734

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: China: Beijing

ncbi_isolation_source: meropenem treated soil

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Beijing Union University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: shantou university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA: WA

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University of Washington


ncbi_country: Germany: Hirschhagen near Lichtenau

ncbi_isolation_source: freshwater pond

ncbi_organism_name: Chromatium weissei

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: Kennedy Institute of Rheumatology, University of Oxford


ncbi_organism_name: Shigella dysenteriae

ncbi_submitter: CDC


ncbi_isolation_source: chlorinated drinking water; site 5

ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: University of Glasgow


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Blackburniibacteriota;s__Candidatus Blackburnbacteria bacterium RIFCSPHIGHO2_02_FULL_39_13


ncbi_isolation_source: groin

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Escherichia coli 95.0941

ncbi_submitter: E. coli Reference Center


ncbi_country: USA: New York

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: fecal grab

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_assembly_name: CLC Genomic Workbench

ncbi_country: USA: GA

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis;x__Salmonella enterica subsp. enterica serovar Infantis str. CVM N31594


ncbi_organism_name: Parasutterella sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Germany

ncbi_isolation_source: sewage digester

ncbi_organism_name: Desulfococcus multivorans DSM 2059

ncbi_submitter: Oak Ridge National Lab


ncbi_assembly_name: Rumen uncultured genome RUG253

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Ekhidna sp.

ncbi_submitter: University of Southern California


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Surface patient room

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Lysinibacillus sp. FSL W8-0953

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Lysinibacillus;x__unclassified Lysinibacillus;s__Lysinibacillus sp. FSL W8-0953


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Brazil: Venda Nova do Imigrante

ncbi_organism_name: Proteus mirabilis

ncbi_strain_identifiers: MCS

ncbi_submitter: KU Leuven


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_country: China: Xi an

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: Australia: Brisbane

ncbi_isolation_source: River

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: Feces

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0088

ncbi_submitter: Broad Institute


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD14720


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Ares Genetics GmbH


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: University of Parma

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium animalis;sb__Bifidobacterium animalis subsp. lactis;x__Bifidobacterium animalis subsp. lactis Bl12


ncbi_country: Spain: Murcia; Abaran

ncbi_isolation_source: Canker exudate

ncbi_organism_name: Xanthomonas prunicola

ncbi_strain_identifiers: CFBP 8353

ncbi_submitter: INRA


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: National Cancer Institute - NIH


ncbi_country: USA: North Carolina

ncbi_isolation_source: Piedmont

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_isolation_source: Small intestine

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES Ploufragan


ncbi_organism_name: Microbacterium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_organism_name: Candidatus Enteromonas sp.

ncbi_submitter: McGill University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota incertae sedis;g__Candidatus Alloenteromonas;x__unclassified Candidatus Enteromonas;s__Candidatus Enteromonas sp.


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Harvard University


ncbi_country: Hungary

ncbi_isolation_source: soil

ncbi_organism_name: Novosphingobium resinovorum

ncbi_submitter: University of Szeged


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Northeastern University


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: USA: WV

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Rhodospirillum sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: USA: Omaha; Nebraska

ncbi_organism_name: Limosilactobacillus caviae

ncbi_submitter: University of Alberta


ncbi_organism_name: Propioniciclava sp.

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_country: Netherlands

ncbi_isolation_source: Burn

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Prosthecobacter debontii

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Israel

ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: Agricultural Research Organization - Volcani Institute


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_country: Chile: Bahia de Concepcion

ncbi_isolation_source: Marine sediments from a bay

ncbi_organism_name: Desulfococcaceae bacterium HSG8

ncbi_submitter: Aarhus University


ncbi_country: China

ncbi_isolate: fresh raw milk

ncbi_isolation_source: fresh raw milk

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_strain_identifiers: fresh raw milk;S0

ncbi_submitter: Institute of Microbiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: South Korea: Dongho-ri; Haeri-myeon; Gochang-gun; Jeollabuk-do

ncbi_organism_name: Fulvivirga maritima

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_isolation_source: Blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology, Beijing


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: University of Florida


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Axillary-groin Swab

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Canada: Guelph

ncbi_isolation_source: Dry seeds

ncbi_organism_name: Bacillus sp. EKM207B

ncbi_submitter: University of Guelph

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. EKM207B


ncbi_organism_name: Acinetobacter guillouiae

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence and no molasses

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Lithuanian Research Centre for Agriculture and Forestry


ncbi_organism_name: Bifidobacterium pseudolongum

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_organism_name: Streptomyces griseoincarnatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Cytobacillus sp. BC1816

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_organism_name: Jiangellales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Serratia fonticola

ncbi_submitter: University Hospital Basel