ncbi_country: USA: Lubbock; TX

ncbi_isolation_source: indwelling urinary catheter

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: National Center for Biotechnology Information

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: Singapore

ncbi_genome_representation: full

ncbi_isolation_source: stool

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: National University of Singapore and Genome Institute of Singapore


ncbi_assembly_level: Contig

ncbi_isolation_source: screen

ncbi_submitter: Wellcome Sanger Institute


gtdb_representative: t

ncbi_country: USA: West Haven; CT

ncbi_isolation_source: gut

ncbi_organism_name: Bartonella apis

ncbi_refseq_category: reference genome

ncbi_submitter: University of Lausanne

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: Knoxville; TN

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Acutalibacter sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Australia: New South Wales

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_organism_name: Microbacterium kyungheense

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Beijing

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium HUM_10


ncbi_country: Norway: Bergen

ncbi_isolation_source: Sewage

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Marine Research


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Salmonella sp. SAL04193

ncbi_submitter: Zhejiang university


ncbi_assembly_level: Chromosome

ncbi_organism_name: Ornithobacterium rhinotracheale

ncbi_submitter: Purdue University


ncbi_organism_name: Microbacterium ureisolvens

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bradyrhizobium sp.


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yangzhou University


ncbi_organism_name: Ancylobacter vacuolatus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Methylococcales bacterium


ncbi_organism_name: Caulobacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centre Hospitalier National et Universitaire de Fann


ncbi_assembly_name: Rumen uncultured genome RUG10253

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Atlantic Ocean

ncbi_isolation_source: deep sea sediments associated with petroleum seepage

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Calgary


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Raoultella terrigena

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Ginsengibacter sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces rimosus


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Brazil: Braganca

ncbi_submitter: LNCC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_assembly_name: uncultured Cand. Thioglobaceae EG15H_Bin1

ncbi_isolation_source: Octocoral

ncbi_submitter: iBB-IST


ncbi_isolation_source: stool

ncbi_organism_name: Morganella morganii

ncbi_submitter: SC


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Brazil: Belem


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: University of Chicago


ncbi_organism_name: Desulfobulbales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_submitter: Yangzhou University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Holosporaceae bacterium

ncbi_submitter: addis ababa university


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Alberta

ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture & Agri-Food Canada


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Yantai University


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Psychrobacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_assembly_name: Rumen uncultured genome RUG10135

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: University of Utah


ncbi_isolation_source: vaginal sample

ncbi_organism_name: Peptoniphilus genitalis

ncbi_submitter: IHU - Mediterranee Infection


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Portugal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: USA: International Space Station

ncbi_isolation_source: ISS environmental surface

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: RMIT University


ncbi_country: USA: New York; Ithaca

ncbi_isolation_source: leaf samples

ncbi_organism_name: Bacillus sp. PsM16

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. PsM16


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Henan

ncbi_isolation_source: feces

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Institute of Disease Control and Prevention, Academy of Military Medical Sciences


ncbi_country: Pakistan

ncbi_isolation_source: nursing call button in hospital intensive care unit

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Wound

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eggerthella sp.


ncbi_country: Chile: Libertador Bernando O Higgins

ncbi_submitter: Ponitificia Universidad Catolica de Chile

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


gtdb_type_species_of_genus: t

ncbi_country: South Korea:Jeju;Chuja islands

ncbi_organism_name: Jejubacter calystegiae

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_organism_name: Salinisphaera shabanensis T35B1

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_country: USA: AZ

ncbi_organism_name: Bordetella holmesii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus


ncbi_country: China

ncbi_isolation_source: baijiu mash

ncbi_organism_name: Agrococcus beijingensis

ncbi_submitter: Beijing Technology and Business University


ncbi_country: Japan: Gifu

ncbi_isolation_source: mesenteric lymph node

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Aichi Prefectural Chuo Livestock Hygiene Service Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_submitter: Oregon State University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: Italy: Verona; Parco Natura Viva

ncbi_isolation_source: fresh feces of black lemurs housed under semi-natural conditions

ncbi_organism_name: Bifidobacterium eulemuris

ncbi_submitter: Korea University


ncbi_country: China: Jiangsu;Nanjing

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-3040

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Caulobacteraceae bacterium

ncbi_submitter: BILS


ncbi_country: Canada: British Columbia

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: United Kingdom

ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Pseudomonas sp. 21615526

ncbi_submitter: Wageningen University & Research


ncbi_country: Brazil: Cotia

ncbi_submitter: USP


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Pseudoalteromonas sp. UBA6508

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Beijing

ncbi_submitter: Beijing Ditan Hospital, Capital Medical University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Mesoaciditogaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: HeNan

ncbi_isolation_source: bronchoalveolar lavage fluid

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: Oita; Japan

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_country: China: Xiaochaidan Lake

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: France

ncbi_isolation_source: feces

ncbi_submitter: Anses


ncbi_organism_name: Pantoea septica


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: The University of Auckland


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: Japan

ncbi_isolation_source: honey

ncbi_organism_name: Bacillus sp. J14TS2

ncbi_submitter: National Agriculture and Food Research Organization

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. J14TS2


ncbi_organism_name: Streptomyces sp. NBC_00444

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Changchun; Jilin

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine


ncbi_organism_name: Thalassospira xiamenensis


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China: Taizhou

ncbi_isolation_source: contaminated soil

ncbi_organism_name: Polluticoccus soli

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Streptococcus suis YS98

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_organism_name: Lysinibacillus sphaericus C3-41

ncbi_submitter: Wuhan Institute of Virology, Chinese Academy of Sciences


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Aquisalimonadaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Mogibacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli p0305293.6

ncbi_submitter: IGS


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: Lanzhou Veterinary Research Institute


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: uncultured Atopobium sp.


ncbi_isolate: MYVALT

ncbi_organism_name: Candidatus Vallotiella hemipterorum

ncbi_strain_identifiers: MYVALT

ncbi_submitter: University of Vienna,Centre for Microbiology and Environmental Systems Science, Division of Microbial Ecology


ncbi_country: Argentina: Ledesma; Jujuy

ncbi_isolation_source: root nodules

ncbi_organism_name: Sinorhizobium sp. 7-81

ncbi_submitter: Institute of Biotechnology and Molecular Biology. FCE - UNLP


ncbi_assembly_name: GEN_BGC Atlantic-Pacific 2011 bin.217 MAG

ncbi_isolate: bin.217 MAG

ncbi_isolation_source: North Pacific

ncbi_organism_name: Formosa sp. Hel3_A1_48

ncbi_strain_identifiers: bin.217 MAG

ncbi_submitter: IDAEA-CSIC


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Brazil: Sao Paulo

ncbi_organism_name: Streptomyces sp. RTd22

ncbi_submitter: Faculdade de Ciencias Farmaceuticas de Ribeirao Preto - University of Sao Paulo


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV009

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Pontimonas sp.

ncbi_submitter: German Federation for Biological Data


ncbi_country: USA: Texas

ncbi_organism_name: Escherichia coli

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_organism_name: uncultured Aggregatibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Nibrella saemangeumensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Butyrivibrio sp. MB2005

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Germany: Magdeburg

ncbi_isolation_source: gastric antrum Patient479

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Max von Pettenkofer-Institut


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: Paramuribaculum intestinale


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_assembly_name: Rumen uncultured genome RUG12568

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: diarrhoeal stool

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodobiaceae bacterium


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Clostridium beijerinckii


ncbi_country: Singapore

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Singapore Streptococcus agalactiae working group


ncbi_isolation_source: Beer

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Microbiology and Fermentation


ncbi_country: Costa Rica

ncbi_organism_name: Spiroplasma kunkelii CR2-3x

ncbi_submitter: Beltsville Agricultural Research Center


ncbi_country: USA: MN

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Duncaniella freteri


ncbi_organism_name: Petrimonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Sputum of Homo sapiens

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Pictou County; NS

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Public Health Agency of Canada


ncbi_country: Lebanon

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Raoultibacter sp.

ncbi_submitter: China Agricultural University


ncbi_country: USA

ncbi_isolation_source: feces from veal calf

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_country: Brazil

ncbi_isolation_source: kidney

ncbi_organism_name: Francisella orientalis

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_organism_name: Bacteroides uniformis dnLKV2

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: EMG


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Sedimentibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Giovannoniibacteriota;s__Candidatus Giovannonibacteria bacterium RIFCSPHIGHO2_01_FULL_45_23


ncbi_submitter: Makerere University


ncbi_country: USA: VA

ncbi_isolation_source: creek water

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: uncultured Parasutterella sp.


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: EPFL


ncbi_country: China: Yangzhou

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_isolation_source: seawater

ncbi_organism_name: Hyunsoonleella pacifica

ncbi_submitter: Shandong University


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: France

ncbi_organism_name: Pseudomonas savastanoi pv. glycinea

ncbi_strain_identifiers: ICMP 5027

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. glycinea


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: USA: Olean; NY

ncbi_isolation_source: soil

ncbi_organism_name: Micromonospora carbonacea subsp. aurantiaca

ncbi_strain_identifiers: aurantiaca

ncbi_submitter: Vanderbilt University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Bronch

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Pittsburgh


ncbi_country: USA: Sand Key; Florida

ncbi_isolation_source: marine

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_organism_name: uncultured Candidatus Planktophila sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__environmental samples;s__uncultured Candidatus Planktophila sp.


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_country: South Africa: Inanda CHC

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0002

ncbi_submitter: Broad Institute


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_organism_name: Psychrobacter sp. Arc29

ncbi_submitter: Linnaeus University


ncbi_country: China: Beijing

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_organism_name: bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Streptomyces sp. NPDC048241

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: National Research Council Canada


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Rhodoluna sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Bacillus cereus group sp. BceL115

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL115


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Streptomyces sp. NPDC057908


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Yersinia sp. 2542 StPb PI

ncbi_strain_identifiers: 2542 StPb PI

ncbi_submitter: Saint-Petersburg Pasteur Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__unclassified Yersinia (in: enterobacteria);s__Yersinia sp. 2542 StPb PI


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: University of Parma


ncbi_organism_name: Xanthomonas oryzae

ncbi_submitter: Cornell University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Abuja


ncbi_assembly_name: freshwater MAG --- Ja_bin-4026

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: uncultured Staphylococcaceae bacterium


ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Oceanimonas smirnovii

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Chroococcidiopsis sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Lachnospira pectinoschiza

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Maricaulis sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_submitter: EMG


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine metagenome


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: USA:Wyoming; Yellowstone National Park; Stumped Spring OF2 hot spring

ncbi_isolation_source: alkaline hot spring microbial mat

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Minnesota


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Faecalibacillus intestinalis


ncbi_isolate: AOP33_2_surf _bin _5

ncbi_organism_name: Lactococcus lactis

ncbi_strain_identifiers: AOP33_2_surf _bin _5

ncbi_submitter: Genoscope


ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: Japan Agency for Marine-Earth Science and technology (JAMSTEC)


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: Jatrophihabitantaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bartonella henselae

ncbi_submitter: Unite de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE) CNRS, Faculte de Medecine, Universite de la Mediterranee, Marseille, France


ncbi_assembly_name: Rumen uncultured genome RUG14646

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: Germany

ncbi_isolation_source: Kiel Fjord

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_organism_name: Capnocytophaga gingivalis


ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Colombia: Magdalena

ncbi_isolation_source: Untreated water

ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: Center for Bioinformatics and Computational Biology of Colombia BIOS


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Anaerospora hongkongensis


ncbi_country: China

ncbi_isolation_source: food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_isolate: Clostridium neonatale E41

ncbi_organism_name: Clostridium neonatale

ncbi_strain_identifiers: Clostridium neonatale E41

ncbi_submitter: universite paris cite


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Third People's Hospital of Shenzhen


ncbi_country: Nigeria: Lagos

ncbi_isolation_source: Palm wine

ncbi_organism_name: Acetobacter senegalensis

ncbi_submitter: North West University


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Moscow

ncbi_isolation_source: Intestine of patients with Crohn s disease

ncbi_organism_name: Escherichia coli

ncbi_submitter: RIPCM


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Lentibacillus kapialis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Eubacterium sp. UBA3658

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. UBA3658


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: China: Ningxia

ncbi_isolation_source: anal swab

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Caldimonas sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Calditrichota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Zhejiang

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_country: France

ncbi_organism_name: Staphylococcus pettenkoferi

ncbi_submitter: INSERM U1047


ncbi_country: Czech Republic: Ortvinovice

ncbi_isolation_source: mud of a pond bottom

ncbi_organism_name: Acinetobacter sp. ANC 4633

ncbi_submitter: National Institute of Public Health


ncbi_country: India: Iewduh; Shillong

ncbi_isolation_source: Retail pork

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: Japan: Ehime Prefecture

ncbi_isolation_source: Soil

ncbi_organism_name: Burkholderia sp. HB1

ncbi_submitter: Tohoku university


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: USA: Maryland

ncbi_isolation_source: Ground Meat

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: U.S. Food and Drug Administration


ncbi_organism_name: Vibrio mimicus

ncbi_submitter: Nanjing Agriculture University


ncbi_assembly_name: Rumen uncultured genome RUG12620

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Israel

ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: Agricultural Research Organization - Volcani Institute


ncbi_country: China: Beijing

ncbi_organism_name: Nocardia sputi

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA: North Carolina

ncbi_isolation_source: agricultural field

ncbi_organism_name: Ralstonia solanacearum K60

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia;x__Ralstonia solanacearum species complex;s__Ralstonia solanacearum;x__Ralstonia solanacearum K60


ncbi_isolation_source: human gut

ncbi_organism_name: Pantoea septica

ncbi_submitter: EMG


ncbi_submitter: Massachusetts Institute of Technology


ncbi_assembly_name: freshwater MAG --- MJ-2014-D3_bin-542

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Japan

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Prochlorococcus sp.

ncbi_submitter: Dekas Lab, Stanford University


ncbi_country: Brazil

ncbi_isolation_source: soybean

ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_strain_identifiers: SEMIA 5080

ncbi_submitter: UFRGS


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Colon

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Listeria monocytogenes FSL J1-175

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes;x__Listeria monocytogenes FSL J1-175


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Research and Production Center for Microbiology and Virology


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Ukraine: Mariupol

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Russia Research Anti-Plague Institute "Microbe"


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Mid-Cayman Rise Vent Fluids

ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter sp. 10FS3-1

ncbi_submitter: South China Agricultural University


ncbi_country: China: Yancheng City; Jiangsu Province

ncbi_isolation_source: farm sewage

ncbi_organism_name: Escherichia coli

ncbi_submitter: SCAU


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: Citrobacter sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Moellerella wisconsensis

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: South China Normal University


ncbi_country: China: Xinjiang

ncbi_isolation_source: milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: Taiwan

ncbi_isolation_source: clinical sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: kaohsiung medical university


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: tissue

ncbi_organism_name: Citrobacter sedlakii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Permianibacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Verrucomicrobiia bacterium


ncbi_organism_name: Bacillus tropicus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: IA

ncbi_isolation_source: liver

ncbi_submitter: University of Missouri

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Brevibacillus laterosporus


ncbi_assembly_name: freshwater MAG --- Ja_bin-1769

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Cryomorphaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces graminearus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Providencia stuartii

ncbi_submitter: ncipd


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Porphyromonas sp. COT-108 OH2963

ncbi_submitter: UC Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;x__unclassified Porphyromonas;s__Porphyromonas sp. COT-108 OH2963


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMBL-EBI


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Desulfatiglandaceae bacterium

ncbi_submitter: Rutgers University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Bartonella vinsonii


ncbi_strain_identifiers: Toprani

ncbi_submitter: CHRISTIAN MEDICAL COLLEGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Serratia ficaria

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Lactobacillus helveticus

ncbi_strain_identifiers: LBGT 196

ncbi_submitter: Technical University of Munich


ncbi_country: Switzerland

ncbi_isolation_source: Catheter

ncbi_organism_name: Staphylococcus haemolyticus


ncbi_country: New Zealand: Dunedin

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: Russia: Altai region; Kulunda Steppe

ncbi_isolation_source: aerobic sediments from hypersaline soda lake

ncbi_organism_name: Marinimicrobium sp. ABcell2

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: USA: California

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA/ARS/WRRC/PSM


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: stool

ncbi_submitter: Butantan Institute


ncbi_country: China: Henan

ncbi_organism_name: Aeromonas salmonicida

ncbi_strain_identifiers: ZAS

ncbi_submitter: Shenzhen Institute of Guangdong Ocean University


ncbi_organism_name: Candidatus Limiplasma merdipullorum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;s__Candidatus Limiplasma merdipullorum


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Southwest Medical University


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_country: USA: TX

ncbi_isolation_source: pork

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Oceanospirillaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Invasive

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA


ncbi_organism_name: Pseudomonas sp. EA_35y_Pfl2_R5

ncbi_submitter: groningen institute for evolutionary life sciences, university of groningen


ncbi_submitter: FDA/CDC


ncbi_isolation_source: rectal swab from healthy college student

ncbi_submitter: Santa Clara University


ncbi_country: United Arab Emirates

ncbi_isolation_source: Maggots

ncbi_organism_name: Ignatzschineria cameli


ncbi_organism_name: Flavobacteriales bacterium


ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: EMG


ncbi_country: Canada

ncbi_organism_name: Clostridioides difficile 6042

ncbi_submitter: Institute for Genome Sciences


ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 1 / A; 5m depth; 0.2 filter

ncbi_organism_name: Planctomycetes bacterium GWA2_50_13

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__unclassified Planctomycetota;s__Planctomycetes bacterium GWA2_50_13


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: USA: WV

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: NCTR


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_isolation_source: egg

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Micromonosporaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MRSN BI Team


ncbi_country: China: Qinghai

ncbi_isolation_source: river bed soil

ncbi_organism_name: Paracoccus sp. MC1862

ncbi_submitter: National Institute for Communicable Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. MC1862


ncbi_organism_name: Rhodopirellula bahusiensis

ncbi_submitter: University of Southern California


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- MJ110927A_bin-334

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_isolation_source: nasopharynx


ncbi_country: China: Shandong

ncbi_isolation_source: sanies

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA

ncbi_isolation_source: spacecraft surface

ncbi_organism_name: Cytobacillus firmus

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: Pseudomonas cichorii

ncbi_submitter: Kyushu University


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Pseudomonas yamanorum

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: freshwater MAG --- KT2_bin-903

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Paraprevotella clara


ncbi_organism_name: uncultured Lentimicrobiaceae bacterium


ncbi_organism_name: Collinsella tanakaei

ncbi_submitter: EMG


ncbi_organism_name: Psychrobacter celer

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Escherichia coli


ncbi_organism_name: uncultured Sulfurospirillum sp.


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_organism_name: Ramlibacter sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Segatella copri

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Candidatus Poriferisodalis sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Candidatus Poriferisodalaceae;g__Candidatus Poriferisodalis;x__unclassified Candidatus Poriferisodalis;s__Candidatus Poriferisodalis sp.


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Eggerthellaceae bacterium


ncbi_organism_name: Oceanobacillus kimchii

ncbi_submitter: Cold Regions Research and Engineering Laboratory


ncbi_organism_name: Coprococcus sp.


ncbi_organism_name: Streptococcus alactolyticus

ncbi_submitter: University of Minnesota


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Devosia sp.


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: Lunds Universitet


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Candidatus Aphodoplasma sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Aphodoplasma;x__unclassified Candidatus Aphodoplasma;s__Candidatus Aphodoplasma sp.


ncbi_assembly_name: freshwater MAG --- A14_bin-2372

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: BILS


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Wilmar International Limited


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS LIN-96

ncbi_isolation_source: activated sludge

ncbi_strain_identifiers: SZAS LIN-96

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: Peru

ncbi_isolation_source: Clinic

ncbi_submitter: Instituto Nacional de Salud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: China: Longshenao Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Xanthomonas sacchari

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_isolation_source: Feral swine feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Xanthomonas sp. NCPPB 1068

ncbi_strain_identifiers: NCPPB 1068

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Verrucomicrobiota bacterium


ncbi_country: Canada: Waterloo; Ontario

ncbi_isolate: BF1 Bin 89

ncbi_isolation_source: biofilm clogging methane capture system of an active municipal landfill in Southern Ontario

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_strain_identifiers: BF1 Bin 89

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_isolation_source: uncut heroin sample

ncbi_organism_name: Shouchella clausii

ncbi_submitter: Bielefeld University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Enterobacteriaceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: EMG


ncbi_country: Puerto Rico: YABUCOA

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia sp. Bp9012

ncbi_submitter: Northern Arizona University


ncbi_country: Japan

ncbi_organism_name: Alicyclobacillus pomorum DSM 14955

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Russia: Astrakhan

ncbi_isolation_source: human stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Russian Research Antiplague Institute "Microbe"


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0281

ncbi_submitter: Broad Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Balneola sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;g__Balneola;x__environmental samples;s__uncultured Balneola sp.


ncbi_isolation_source: G-tube swab

ncbi_organism_name: Raoultella planticola

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: South Korea

ncbi_isolation_source: Retail raw chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Seoul National University


ncbi_organism_name: Roseburia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: Small intestine

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: USA: Chicago

ncbi_isolation_source: resected distal colon tissue

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Chicago


ncbi_isolation_source: middle ear

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Chromatiaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_organism_name: Shewanella algae

ncbi_submitter: Soochow University


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Salmonella sp. C3302

ncbi_submitter: Sichuan University


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Infantis

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Desulfatiglandales bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Oklahoma

ncbi_isolation_source: produced fluids from hydraulically fractured shales

ncbi_organism_name: Thermotoga sp.

ncbi_submitter: The Ohio State University


ncbi_country: Mexico

ncbi_isolation_source: feces (Canis latran)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Xanthobacter autotrophicus Py2

ncbi_submitter: US DOE Joint Genome Institute


ncbi_organism_name: Mycobacterium tuberculosis KT-0106

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: Clemson University


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Nocardiopsis algeriensis

ncbi_strain_identifiers: CECT 8712

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Maribacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_submitter: BCM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus TCH130


ncbi_country: South Africa:Stellenbosch

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Portland State University


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_country: Denmark

ncbi_isolation_source: Feces

ncbi_organism_name: Bacteroidales bacterium GP3

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium GP3


ncbi_assembly_name: freshwater MAG --- Day2-3_bin-268

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Center for Genome Regulation (CRG)


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Virgibacillus sp. SK37

ncbi_submitter: BGI


ncbi_country: Peru


ncbi_country: China: Guangdong

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: urine

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: United Kingdom: London

ncbi_isolation_source: not available: to be reported later

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces


ncbi_submitter: Jiangxi Academy of Agricultural Sciences


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Australia: NSW

ncbi_submitter: Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Georgia Tech


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli P0299917.9

ncbi_submitter: IGS


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang university


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Rutgers University


ncbi_submitter: The Lu'an People's Hospital


ncbi_country: Japan

ncbi_isolation_source: hospital sewage

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Shinshu University Graduate School of Medicine, Science and Technology


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: Iran: Ghazvin

ncbi_isolation_source: olive rhizosphere from garden soil

ncbi_organism_name: Pseudomonas sp. Q11

ncbi_submitter: National Institute of Genetic Engineering and Biotechnology


ncbi_country: China: Neimenggu

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_organism_name: Pectobacterium polaris

ncbi_submitter: NIVIP


ncbi_organism_name: Paraglaciecola mesophila

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_country: USA: Philadelphia; PA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Pennsylvania


ncbi_isolation_source: isolated from soil from the Genoscope premises

ncbi_organism_name: uncultured Sporomusa sp.

ncbi_submitter: Genoscope CEA


ncbi_country: Czech Republic: near Dobris

ncbi_isolation_source: freshwater cyanobacterial bloom; eutrophic fishpond Papez

ncbi_organism_name: Cuspidothrix issatschenkoi CHARLIE-1

ncbi_submitter: The Czech Academy of Sciences, Biology Centre


ncbi_country: Canada: Sherbrooke

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: China

ncbi_submitter: Yangzhou university


ncbi_country: Canada: Quebec City

ncbi_isolation_source: anal swab

ncbi_organism_name: Citrobacter farmeri

ncbi_submitter: Universite Laval


ncbi_country: Russia: Troitsa Bay; Sea of Japan

ncbi_isolation_source: gonads male

ncbi_organism_name: Vibrio sp. Sgm 5

ncbi_submitter: G.B. Elyakov Pacific Institute of Bioorganic Chemistry

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__unclassified Vibrio;s__Vibrio sp. Sgm 5


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: Israel

ncbi_isolation_source: cerebral spinal fluid

ncbi_organism_name: Cronobacter sakazakii 8399

ncbi_submitter: Nottingham Trent University, UK


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: Germany: Muelheim

ncbi_isolation_source: River/sewer


ncbi_country: Germany

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_isolation_source: blood

ncbi_organism_name: Helicobacter cinaedi

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Norwegian University of Life Sciences, Faculty of Veterinary Medicine


ncbi_organism_name: Pseudoduganella buxea

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Cupriavidus lacunae

ncbi_submitter: Chung-Ang University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Thermostichus sp. HHBFW_bins_43

ncbi_submitter: Sun Yat-sen University


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Lachnobacterium sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: kimchi

ncbi_organism_name: Weissella koreensis

ncbi_strain_identifiers: HJ

ncbi_submitter: Kyung Hee University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: feces dairy cow (Bos taurus)

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Cerro;x__Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001681


ncbi_organism_name: Janthinobacterium sp. Marseille

ncbi_strain_identifiers: Marseille

ncbi_submitter: Information Genomique et Structurale, CNRS UPR2589


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Cryptobacterium sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Nitrosomonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: South Korea: Yong-in

ncbi_isolation_source: flower

ncbi_organism_name: Fibrella forsythiae

ncbi_submitter: Hankuk University of Foreign Studies


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Bythopirellula sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: nasopharynx


ncbi_country: New Zealand

ncbi_isolation_source: abdominal wound

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Thailand

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Prince of Songkla University


ncbi_country: China: Yunnan

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Eggerthella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Bifidobacterium breve


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acidulodesulfobacterium;s__Candidatus Acidulodesulfobacterium ferriphilum


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bilifractor sp. LCP21S3_A7

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Biology Centre CAS


ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Cocleimonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: freshwater MAG --- MJ120620B_bin-346

ncbi_organism_name: uncultured Campylobacterales bacterium

ncbi_submitter: BILS


ncbi_country: Taiwan

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Zilean

ncbi_submitter: National Chung Cheng University


ncbi_isolation_source: pine grove soil

ncbi_organism_name: Streptacidiphilus pinicola

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_submitter: JUSTUS LIEBIG UNIVERSITAT


ncbi_submitter: Carleton Univeristy


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Christian Medical College


ncbi_country: Papua New Guinea

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Gluconacetobacter tumulicola

ncbi_submitter: Ghent University


ncbi_country: Canada: Scotian Shelf

ncbi_isolation_source: pooled samples from sponge host and sea water

ncbi_organism_name: Candidatus Paceibacter sp.

ncbi_submitter: SponGES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;o__Minisyncoccales;f__Candidatus Paceibacteraceae;g__Candidatus Paceibacter;x__unclassified Candidatus Paceibacter;s__Candidatus Paceibacter sp.


ncbi_organism_name: uncultured Cellvibrionales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_country: USA: SD

ncbi_isolation_source: ileum (Sus scrofa scrofa)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: Kvitko Lab


ncbi_organism_name: Polynucleobacter sp. JS-JIR-II-c23

ncbi_submitter: University of Innsbruck


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA:Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: Ghana

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Luebeck


ncbi_country: USA

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_organism_name: Klebsiella pneumoniae 30660/NJST258_1

ncbi_submitter: Igenbio Inc


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Megasphaera micronuciformis


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: France: Rabion; Noyant

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University of Applied Sciences and Arts Western Switzerland hepia


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: sputum of adult cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolate: Faeces

ncbi_isolation_source: ROAR

ncbi_submitter: UMR 1137 IAME


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Streptomyces sp. NPDC029704

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 407

ncbi_submitter: SC


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Waltera sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: University of Nigeria, Nsukka, Nigeria


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Leptospirales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Sulfurimonadaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Ruminiclostridium sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Eubacterium maltosivorans


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_submitter: University of California San Diego


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: daegu university


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Ilumatobacteraceae bacterium


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolate: AOP1_I1_surf _bin _9

ncbi_organism_name: Lactococcus lactis

ncbi_strain_identifiers: AOP1_I1_surf _bin _9

ncbi_submitter: Genoscope


ncbi_organism_name: Arcanobacterium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: lake water

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: freshwater MAG --- KR_bin-2956

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Enterococcus sp. Edu-1

ncbi_submitter: CHA University


ncbi_organism_name: uncultured Ktedonobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_country: Australia: Shark Bay; Hameline Pool

ncbi_isolation_source: microbial mat from hypersaline water environment

ncbi_organism_name: candidate division GN15 bacterium

ncbi_submitter: University of New South Wales

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__candidate division GN15;s__candidate division GN15 bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces chilikensis


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Wilmar International Limited


ncbi_genome_representation: partial

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Inner Mongolia Medical University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA:Minnesota; Rochester

ncbi_isolate: CIM:MAG 1422

ncbi_organism_name: Coriobacteriia bacterium

ncbi_strain_identifiers: CIM:MAG 1422

ncbi_submitter: Mayo Clinic


ncbi_country: China: Shandong

ncbi_isolation_source: commercial chicken farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Purity-IQ Inc.


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Tang lab


ncbi_country: China: Henan

ncbi_submitter: China CDC


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Secone University Hospital, Sichuan University


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Cleveland Clinic


ncbi_country: Italy

ncbi_isolation_source: salami

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: uncultured Kordiimonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rock nearby Barbacenia macrantha specimens

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Paenibacillus larvae

ncbi_submitter: USDA-ARS-NCAUR


ncbi_assembly_name: Rumen uncultured genome RUG12580

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: blood

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: freshwater MAG --- Loclat_bin-00679

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: USA: Damariscotta River in front of the Bigelow Laboratory for Ocean Sciences

ncbi_isolation_source: four week timepoint of microcosm treated with photo-oxidized crude oil after inoculation with natural surface seawater; biological replicate 1

ncbi_organism_name: Legionellaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Switzerland

ncbi_isolation_source: milk

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Bern


ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre pasteur du Cameroun


ncbi_country: Italy: Florence

ncbi_isolation_source: pharyngeal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_country: China: Hangzhou

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: wastewater

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: Taiwan

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: National Chung Hsing University


ncbi_organism_name: Gemmiger formicilis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Cameroon: Yaounde

ncbi_isolation_source: river water


ncbi_strain_identifiers: NBRC 3972

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: University of Iowa


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_submitter: Goethe University Frankfurt


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_country: Russia: Elista

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Russian Research Anti-plague Institute "Microbe"


ncbi_country: India

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India