ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: Xiamen University


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Aeromonas hydrophila ML09-119

ncbi_submitter: Mississippi State University


ncbi_country: China: Zhejiang

ncbi_isolation_source: gastroscopic antral biopsy specimen

ncbi_organism_name: Helicobacter pylori wls-5-17

ncbi_submitter: Academy of Military Medical Sciences


gtdb_representative: t

ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_level: Scaffold

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leicester


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Spain: Galicia

ncbi_organism_name: Kiloniella majae

ncbi_refseq_category: reference genome

ncbi_submitter: Universidad de Santiago de Compostela

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Lachnospiraceae bacterium 3-1


ncbi_isolation_source: Blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Erasmus University Medical Center


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Citrobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_assembly_name: gdodcwi08 v01

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_isolation_source: sugarcane dry straw soil

ncbi_organism_name: Variovorax sp.

ncbi_submitter: UNESP-FCAV


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ausgem


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Woeseia sp.

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Enterococcus faecalis EnGen0364

ncbi_submitter: Broad Institute


ncbi_country: Germany

ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Munster


ncbi_country: China: South Sea

ncbi_isolation_source: sediment

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Third Institute of Oceanography, Ministry of natural resources


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: Leclercia adecarboxylata


ncbi_organism_name: Prevotellamassilia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: China

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Rhodobacteraceae bacterium LNNU 3342

ncbi_strain_identifiers: LNNU 3342

ncbi_submitter: Liaoning Normal University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Sandaracinaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Streptococcus sp. HCA-5024

ncbi_submitter: Seoul National University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Terryibacteriota;s__Candidatus Terrybacteria bacterium RIFCSPLOWO2_01_FULL_40_23


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 6491

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Thailand

ncbi_submitter: SC


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Luminiphilus sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: uncultured Coprococcus sp.


ncbi_organism_name: Actinomycetales bacterium JB111

ncbi_submitter: MICALIS


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Brazil

ncbi_isolation_source: carcass

ncbi_organism_name: Metapseudomonas otitidis

ncbi_submitter: Federal University of Rio Grande do Sul


ncbi_country: Portugal

ncbi_isolation_source: Bird of prey

ncbi_organism_name: Escherichia coli

ncbi_submitter: CHU Clermont-ferrand


ncbi_country: Kyrgyzstan

ncbi_organism_name: Yersinia pestis

ncbi_submitter: SRCAMB


ncbi_organism_name: Xenorhabdus innexi

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Toho university


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Planctomycetaceae bacterium UBA2972

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Atlanta

ncbi_isolation_source: nasopharyngeal swab of healthy child between ages five months and five years old

ncbi_organism_name: Streptococcus pneumoniae NP127

ncbi_submitter: Institute for Genome Sciences


ncbi_assembly_level: Chromosome

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Indian Institute of Technology Delhi


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Massilia timonae


ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Weizhou Island

ncbi_organism_name: Bacillus pinisoli

ncbi_submitter: Guangxi University For Nationalities


gtdb_type_species_of_genus: t

ncbi_country: China: Beijing

ncbi_organism_name: Yeguia hominis

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_country: China: Guangxi

ncbi_isolation_source: gut

ncbi_strain_identifiers: BAMA 0315

ncbi_submitter: Harbin Medical University


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: University of Washington


ncbi_country: USA: PA

ncbi_isolation_source: spleen mouse

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: China: Guangdong

ncbi_isolation_source: cloacal swab

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bacillus sp. EU63

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. EU63


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: New York

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Pneumonia Response and Surveillance Laboratory (CDC)


ncbi_country: China: Hangzhou

ncbi_isolation_source: manure

ncbi_organism_name: bacterium

ncbi_submitter: zhejiang university


ncbi_organism_name: bacterium 1xD42-87

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG11217

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: cold seep

ncbi_organism_name: Sedimentibacter sp. zth1

ncbi_submitter: CHINESE ACADEMY OF SCIENCES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp. zth1


ncbi_organism_name: Streptomyces rubiginosohelvolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China

ncbi_isolation_source: food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_country: USA: California; Pasadena; JPL; Building 179

ncbi_isolation_source: cleanroom floor

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: lake water

ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Paramicrobacterium fandaimingii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: China: Shenzhen; Nanshan

ncbi_isolation_source: stool

ncbi_organism_name: Aeromonas veronii


ncbi_country: Poland: Gdansk

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institiute


ncbi_country: France: Bordeaux

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Parachlamydiales bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: bacterial symbionts of Trichonympha collairs in the termite gut

ncbi_organism_name: Candidatus Desulfovibrio kirbyi

ncbi_submitter: Tokyo Institute of Technology


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: human gut

ncbi_organism_name: Neglectibacter timonensis

ncbi_submitter: EMG


ncbi_isolation_source: perithecium

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Zhejiang University


ncbi_country: China: Tongling Copper Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_submitter: University of Thessaly


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Imperial College London


ncbi_organism_name: Candidatus Onthoplasma faecigallinarum

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Giesbergeria sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Methylococcus capsulatus str. Bath

ncbi_strain_identifiers: Bath

ncbi_submitter: TIGR


ncbi_country: USA: FL

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Curtissiibacteriota;s__Candidatus Curtissbacteria bacterium GW2011_GWD1_40_8


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Chamaesiphon sp.

ncbi_submitter: Rutgers University


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Chicago


ncbi_organism_name: Blautia obeum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Escherichia coli CE418

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Japan: Saitama; Kawagoe

ncbi_isolation_source: human metabolite

ncbi_organism_name: Pseudomonas juntendi

ncbi_submitter: Department of Microbiology, Juntendo University School of Medicine


ncbi_organism_name: Streptomyces sp. CNH099

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Kitasatosporales;f__Streptomycetaceae;x__Streptomycetaceae incertae sedis;x__MAR4 Clade;s__Streptomyces sp. CNH099


ncbi_country: Italy: Berchidda

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Monash University


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Egypt

ncbi_submitter: USUHS


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Francisella philomiragia

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Gaiellaceae bacterium


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho university


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Netherlands

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: University College Cork


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas mediterranea

ncbi_submitter: Tobacco Research Institute of Chinese Academy of Agricultural Sciences


ncbi_organism_name: Streptococcus pasteurianus

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Zambryskiibacteriota;s__Candidatus Zambryskibacteria bacterium RIFCSPLOWO2_12_FULL_39_23


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Candidatus Gottesmanbacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;x__unclassified Candidatus Gottesmanbacteria;s__Candidatus Gottesmanbacteria bacterium


ncbi_isolation_source: lake water column

ncbi_organism_name: Rhodocyclales bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: France: Paris

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Burkholderia sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Turkey

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_country: Panama: Bocas del Toro; STRI Point

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Stony Brook University


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Soochow University


ncbi_country: Puerto Rico: SALINAS

ncbi_organism_name: Burkholderia sp. Bp9011

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain: Asturias

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Salmonella enterica CVM N41747-SQ v1.0

ncbi_country: USA: NY

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 15m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Third Affiliated Hospital of Guangzhou Medical University


ncbi_organism_name: Bartonella sp. OC73QHHN

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Streptomyces coelicoflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Chthoniobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Shanghai Fisheries Research Institute


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: University Hospital Regensburg


ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_organism_name: Microbacterium sp. F2

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium


ncbi_isolate: AOP33_2_surf _bin _15

ncbi_organism_name: Glutamicibacter ardleyensis

ncbi_strain_identifiers: AOP33_2_surf _bin _15

ncbi_submitter: Genoscope


ncbi_organism_name: Lactococcus formosensis

ncbi_submitter: Universitas Gadjah Mada


ncbi_submitter: Escuela Nacional de Ciencias Biologicas, IPN


ncbi_organism_name: Bulleidia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Acidobacteriota bacterium


ncbi_isolation_source: produced fluids from hydraulically fractured shales DJB-3 day 1472

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The Ohio State University


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_country: China: Jiaxing; Zhejiang

ncbi_isolation_source: porcine heart

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_submitter: The Italian National Institute of Health


ncbi_organism_name: Ascidiaceihabitans sp.

ncbi_submitter: University of Southern California


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Bacteroides uniformis CL03T00C23

ncbi_submitter: Broad Institute


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_assembly_name: Rumen uncultured genome RUG12383

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: USA: TX

ncbi_isolation_source: soil

ncbi_organism_name: Listeria farberi

ncbi_submitter: Cornell University


ncbi_organism_name: Spongiibacter sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Aarhus University


ncbi_country: USA: Georgia

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: University of Oklahoma Health Sciences Center


ncbi_country: USA

ncbi_isolation_source: human skin

ncbi_organism_name: Hoylesella nanceiensis

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: Spain: Madrid

ncbi_isolation_source: itra-abdominal tract infection

ncbi_submitter: AstraZeneca


ncbi_organism_name: Alistipes putredinis DSM 17216

ncbi_submitter: Washington University Genome Sequencing Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes putredinis;x__Alistipes putredinis DSM 17216


ncbi_country: Switzerland: Perrefitte

ncbi_isolation_source: choana

ncbi_organism_name: Candidatus Chlamydia corallus

ncbi_submitter: University of the Sunshine Coast


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: Skive

ncbi_isolation_source: activated sludge from Skiv_18-Q3-R9-52

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Aalborg University


ncbi_country: Bangladesh: Mirzapur

ncbi_isolation_source: feces

ncbi_submitter: University of Maryland School of Medicine


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_country: Malaysia

ncbi_isolation_source: Gastric tissue

ncbi_organism_name: Helicobacter pylori UM065

ncbi_submitter: UM-UNSW-MGRC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_isolation_source: Hospital Universitario Central de Asturias (Oviedo)

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CNAG-CRG


ncbi_country: Russia

ncbi_isolation_source: urethal swab

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences,


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: strain P-8 in MRS medium

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Key Laboratory of Dairy Biotechnology and Engineering, Ministry of Education


ncbi_country: USA: LA

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: MD

ncbi_isolation_source: Baby Wipes

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_country: Kenya

ncbi_organism_name: Megasphaera sp. UBA5897

ncbi_submitter: University of Queensland


ncbi_organism_name: Deinococcus rufus

ncbi_strain_identifiers: CCTCC AB 2017081

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_assembly_name: Rumen uncultured genome RUG10887

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Serratia marcescens

ncbi_strain_identifiers: SampleO

ncbi_submitter: California Department of Public Health


ncbi_country: China: Shandong

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Afipia carboxidovorans OM4

ncbi_submitter: Georg-August-University Goettingen


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Granulicella sp.

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: United Kingdom: London

ncbi_isolation_source: blood

ncbi_organism_name: Corynebacterium jeikeium

ncbi_submitter: SC


ncbi_country: Thailand: Chiang Mai province

ncbi_isolation_source: Human feces

ncbi_submitter: Faculty of Veterinary science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Anaerostipes sp.

ncbi_submitter: EMG


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: PulseNet USA

ncbi_type_material_designation: assembly designated as clade exemplar


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Flavobacterium lindanitolerans

ncbi_submitter: Chung ang university


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_country: China: Xuzhou

ncbi_isolation_source: milking environment

ncbi_organism_name: Shewanella sp. JNE3-1


ncbi_country: USA: Florida Reef Tract near Ft Lauderdale

ncbi_isolation_source: coral surface mucus layer from newly infected colony B

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: University of Florida


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Vampirovibrio sp.


ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Virgibacillus tibetensis

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Microcoleus sp. A6-D4

ncbi_submitter: Palacky University Olomouc


ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: China

ncbi_isolation_source: Blood culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Ruijin Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: NHS Scotland

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_country: China: Zhejiang

ncbi_isolation_source: draining liquid of kidney transplantation recipient

ncbi_submitter: The First Affiliated Hospital,College of Medicine,Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Enterocloster aldenensis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guangdong

ncbi_isolation_source: farm worker

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Germany

ncbi_isolation_source: raw milk

ncbi_organism_name: Pseudomonas sp. WS 5086

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 171

ncbi_submitter: Oregon State University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_assembly_name: freshwater MAG --- Loc080925-7m_bin-0383

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: BILS


ncbi_country: USA

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Thermocrinis sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Tibet

ncbi_organism_name: Yersinia pestis

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: Bacteroides uniformis


ncbi_country: China: Guangzhou

ncbi_isolation_source: food

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Sink Drain

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: China: Hangzhou

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Tissierellales bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: EMG


ncbi_country: Canada: Near Fort McMurray in northeastern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Firmicutes bacterium UBA6185

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA6185


ncbi_organism_name: Escherichia coli

ncbi_submitter: Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Center for Bioinformatics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: Federation University


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Yakult Central Institute


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_country: Netherlands

ncbi_isolation_source: plant tissue

ncbi_organism_name: Dickeya dianthicola

ncbi_submitter: Sorbonne University


ncbi_isolation_source: bile

ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: Georgia Tech


ncbi_country: Thailand

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Gaiella sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Japan

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Nagoya University


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0996

ncbi_submitter: Broad Institute


ncbi_country: Bangladesh

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: North South university


ncbi_country: USA

ncbi_organism_name: Curtobacterium flaccumfaciens pv. flaccumfaciens

ncbi_submitter: Institute for Agricultural, Fisheries and Food Research (ILVO)


ncbi_country: Ireland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_country: China: AnHui

ncbi_isolation_source: Liquor pit mud

ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Sichuan University of Science and Engineering


ncbi_country: South Africa: University of Cape Town; Rondebosch

ncbi_isolation_source: Cyanide and thiocyanate bioreactor

ncbi_organism_name: Lysobacteraceae bacterium SCN 69-320

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Germany: near Reyershausen

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Thiocystis minor

ncbi_strain_identifiers: DSM 178

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_organism_name: uncultured Microthrixaceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- MJ2_bin-180

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Sterolibacterium sp.

ncbi_submitter: BILS


ncbi_organism_name: Nocardia africana

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Burkholderia sp. BCCCDS19

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanxi Eye Hospital


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Dexing Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Spirosomataceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: CHU Bicetre


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: University of Chicago


ncbi_country: Israel: Rishon Le-Zion

ncbi_isolation_source: wheat roots in anaerobic condition with nitrous oxide addition

ncbi_organism_name: Rhizobium sp. AU243

ncbi_submitter: ARO-Agricultural Research Organization, Volcani Center


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: China

ncbi_isolation_source: marine sediments

ncbi_organism_name: Pseudohalioglobus sediminis

ncbi_submitter: Shandong University at Weihai


ncbi_country: USA: Florida; Summerland Key

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Stony Brook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Agathobacter sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acidimicrobiia bacterium


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Enterococcus innesii

ncbi_submitter: University of Fribourg


ncbi_organism_name: Prevotella jejuni

ncbi_submitter: EMG


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: Pseudonocardia xinjiangensis


ncbi_assembly_name: Rumen uncultured genome RUG12257

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: soil

ncbi_organism_name: Paenarthrobacter nitroguajacolicus


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Regensburg


ncbi_country: China: Guiyu

ncbi_isolation_source: river sediment

ncbi_organism_name: Dehalococcoides mccartyi

ncbi_submitter: National University of Singapore


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_organism_name: Mycolicibacterium farcinogenes

ncbi_submitter: URMITE


ncbi_organism_name: Treponema maltophilum


ncbi_country: Germany

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Heidelberg University Hospital


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Canada: Labrador Sea

ncbi_isolation_source: Microcosm inoculated with Labrador Shelf sediment and amended with petroleum hydrocarbons

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp3 AA111

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp3 AA111

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Slovenia

ncbi_isolation_source: Wound smear

ncbi_organism_name: Bacillus cereus

ncbi_submitter: DGA CBRN Defence Center


ncbi_country: South Korea

ncbi_organism_name: Dokdonella koreensis DS-123

ncbi_submitter: Yonsei University


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Spain

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universite Laval


ncbi_organism_name: Arcobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Paracoccus sediminilitoris

ncbi_submitter: Xiamen University


ncbi_submitter: Genomics Research Center of Harbin Medical

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi C;x__Salmonella enterica subsp. enterica serovar Paratyphi C str. RKS4594


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_submitter: Swansea University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia obeum

ncbi_submitter: University of Chicago


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Microbacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides merdipullorum


ncbi_country: Switzerland

ncbi_isolation_source: rabbit carcass

ncbi_organism_name: Pseudomonas carnis

ncbi_submitter: University of Zurich


ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Metabacillus sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingobacteriaceae bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_country: Russia: Yessentuki mineral water deposit

ncbi_isolation_source: groundwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universiti Putra Malaysia


ncbi_submitter: Kyoto University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Serratia sp. CY40824

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY40824


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Streptomyces sp. P9-2

ncbi_submitter: Shanxi Agricultural University


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Rakuno Gakuen University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Universidad del Pais Vaso/Euskal Herriko Unibertsitatea (UPV/EHU)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The British University in Egypt


ncbi_organism_name: Candidatus Limivicinus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limivicinus;x__unclassified Candidatus Limivicinus;s__Candidatus Limivicinus sp.


ncbi_organism_name: uncultured Rhodoferax sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Clavibacter nebraskensis

ncbi_submitter: Penn State University


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Firmicutes bacterium CAG:884

ncbi_submitter: DTU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:884


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: USA: Gulf of Mexico

ncbi_isolate: MOX C

ncbi_isolation_source: methanogen symbiont from mussel gill epithellium

ncbi_strain_identifiers: MOX C

ncbi_submitter: CRC 1182 Origin and Function of Metaorganisms

ncbi_taxonomy_unfiltered: d__Bacteria;x__unclassified Bacteria;s__Bathymodiolus brooksi methanotrophic gill symbiont


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ASCENSION


ncbi_organism_name: Streptomyces xanthochromogenes

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Sulfurovum sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leicester


ncbi_organism_name: uncultured Senegalimassilia sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: Brazil: Salvador

ncbi_strain_identifiers: Fiocruz LV2811

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. Fiocruz LV2811


ncbi_country: Saudi Arabia: Makkah

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Umm Al-Qura University


ncbi_country: Canada: Alberta

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_submitter: China CDC


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: South Korea: Chilgok-gun; Gyeongsangbuk-do

ncbi_isolation_source: Hyporheic Zone

ncbi_organism_name: Nibricoccus aquaticus

ncbi_submitter: Nakdonggang National Institute of Biological Resources


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Faecalibacterium sp. OM04-11BH

ncbi_submitter: BGI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: Milk powder plant

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: University of Zurich


ncbi_organism_name: Campylobacter vicugnae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA: Illinois

ncbi_isolation_source: soil

ncbi_organism_name: Nannocystis sp. ILAH1

ncbi_submitter: University of Mississippi


ncbi_organism_name: Bacteroides uniformis


ncbi_isolation_source: aspirate

ncbi_submitter: SRCAMB


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: KYUNG HEE UNIVERSITY


ncbi_country: Canada: Lacombe

ncbi_organism_name: Alistipes sp.

ncbi_submitter: AAFC


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia sp. MSMB1552

ncbi_submitter: Northern Arizona University


ncbi_country: United Kingdom

ncbi_isolation_source: Human stool

ncbi_organism_name: Campylobacter coli BIGS0019

ncbi_submitter: Swansea University


ncbi_country: Canada: Toronto

ncbi_isolation_source: Processing enviroment

ncbi_submitter: Public Health Agency of Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes;x__Listeria monocytogenes serotype 1/2a;x__Listeria monocytogenes serotype 1/2a str. 08-7364


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Thermoflexus hugenholtzii JAD2

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Spain

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Valencia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolation_source: human gut

ncbi_organism_name: Eubacterium ventriosum

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Bacillus sp. SG20001

ncbi_submitter: Korea University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. SG20001


ncbi_organism_name: Adlercreutzia caecimuris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Comamonas sp. KCTC 72670

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_strain_identifiers: LSD


ncbi_country: USA: Memphis

ncbi_organism_name: Bacillus cereus

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_country: Japan

ncbi_organism_name: Desulfovirgula thermocuniculi DSM 16036

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: MIT

ncbi_organism_name: Helicobacter saguini

ncbi_submitter: MIT


ncbi_country: USA

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: vaginal

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_country: United Kingdom:Papworth

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- Ja2-D4_bin-1024

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: Ethiopia: Amhara; West Gojam

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: National Institute of Animal Health


ncbi_country: Thailand

ncbi_isolation_source: EMS/AHPND-diseased hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: National Cheng Kung University


ncbi_country: Colombia: Valle

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Rhodobacterales bacterium 34-62-10


ncbi_isolation_source: chicken meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universite Laval


ncbi_organism_name: Prevotella nigrescens

ncbi_submitter: EMG


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Roseburia sp.


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: University of Chicago


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Henan Agricultural University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: the hong kong university of science and technology


ncbi_assembly_name: IMG-taxon 2706795032 annotated assembly

ncbi_organism_name: Novosphingobium mathurense

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University hospital Lubeck


ncbi_country: China: Zhejiang

ncbi_organism_name: Acinetobacter sp. YH01026

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1816S

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillus sp. FSL R5-0576

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL R5-0576


ncbi_organism_name: Streptomyces globisporus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Saccharofermentanales bacterium

ncbi_submitter: East China Normal University


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Parvibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: University of Michigan Medical School


ncbi_country: Brazil

ncbi_isolation_source: chicken carcass

ncbi_submitter: Universidade de Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Sweden

ncbi_organism_name: Mycobacterium tuberculosis BTB03-142


ncbi_submitter: University of Florida


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Campylobacter jejuni


ncbi_country: Israel

ncbi_isolation_source: Har Michya

ncbi_organism_name: Trichocoleus desertorum NBK24

ncbi_submitter: Ben Gurion University


ncbi_country: China: Shenzhen

ncbi_organism_name: Sellimonas intestinalis

ncbi_submitter: BGI


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_country: China: Jiangsu

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Spain

ncbi_isolation_source: Medical

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto de Investigacion Sanitaria y Biomedica de Alicante


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Salmonella sp. 741265144_CST

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: uncultured Lachnoclostridium sp.


ncbi_country: Switzerland: Bern

ncbi_isolation_source: Driveline

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Inselspital, Bern University Hospital


ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Oscillospiraceae bacterium HCN-4035

ncbi_submitter: Seoul National University


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Australia

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Microbiological Diagnostic Unit


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Bifidobacterium sp.


ncbi_country: Chile: Santiago

ncbi_isolation_source: feces

ncbi_submitter: Universidad de Chile


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium MD308

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: Human blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: TAILORED-Treatment project


ncbi_country: Taiwan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Taiwan University Hospital


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: China: Beijing

ncbi_isolation_source: wound secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese PLA General Hospital


ncbi_organism_name: Paenibacillus larvae

ncbi_submitter: Charles University


ncbi_organism_name: Pusillimonas noertemannii

ncbi_submitter: Max Planck Institute for Biology


ncbi_country: Netherlands: Utrecht

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: TU Delft


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_assembly_name: freshwater MAG --- MJ120716A_bin-0303

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: China: Zhejiang; Hangzhou

ncbi_submitter: Zhejiang University


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Ruminococcaceae bacterium UBA1039

ncbi_submitter: University of Queensland


ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Terriglobales bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_isolation_source: Shunt fluid

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Shenzhen People's Hospital


ncbi_country: China: Chengdu

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Paenibacillus melissococcoides

ncbi_submitter: National Institute of Animal Health, National Agriculture and Food Research Organization


ncbi_country: South Korea: Gapcheon

ncbi_isolation_source: Enveronmental soil

ncbi_organism_name: Limnovirga soli

ncbi_submitter: Nakdonggang National Institute of Biological Resources


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Vibrio atlanticus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Schaedlerella sp.


ncbi_country: Italy: Apulia

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Metapseudomonas otitidis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Colombia: Medellin

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Alianza científico - tecnológica Nucleosensor-TB


ncbi_country: Canada: Ontario

ncbi_isolation_source: sternal wound

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Public Health Ontario


ncbi_isolation_source: liver

ncbi_organism_name: Pasteurella multocida subsp. multocida

ncbi_submitter: Zeta Biosciences


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0745

ncbi_submitter: Broad Institute


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: termite gut

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Maribacter dokdonensis

ncbi_submitter: University of Southern California


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: Chile:near Tacora Volcano

ncbi_isolation_source: Lluta River sediment

ncbi_organism_name: Ancylobacter sp. TS-1

ncbi_submitter: Pontificia Universidad Catolica de Chile


ncbi_country: United Kingdom: Norwich

ncbi_organism_name: Streptomyces venezuelae

ncbi_submitter: John Innes Centre


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Ethiopia: Oromia; East Shewa

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Mycolicibacterium sp. BK556

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Candidatus Pelagibacter sp. TMED166

ncbi_submitter: Tara Oceans Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp. TMED166


ncbi_organism_name: Escherichia coli

ncbi_submitter: INSTITUT PASTEUR


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Filifactor alocis

ncbi_submitter: EMG


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_assembly_name: IMG-taxon 2738541339 annotated assembly

ncbi_organism_name: Fibrobacter sp. UWT3

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_assembly_name: BEB

ncbi_country: Australia: Townsville; Queensland

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia pseudomallei

ncbi_strain_identifiers: BEB

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: South Korea: Seoul

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Yonsei university college of medicine


ncbi_submitter: Jeonbuk National University


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: BGI


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Cetobacterium sp.

ncbi_submitter: China Agricultural University


ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_country: China: Tibet

ncbi_organism_name: Yersinia pestis

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_submitter: University of Sheffield


ncbi_country: Australia: U-Vet Werribee Animal Hospital

ncbi_isolation_source: Guttural pouch biopsy

ncbi_organism_name: Serratia marcescens

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: healthy adult 3C

ncbi_organism_name: Clostridium sp. CAG:354_28_25


ncbi_isolation_source: marine water sample

ncbi_organism_name: Sutterellaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_organism_name: Oricola sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolate: Sphingobium sp. strain S8

ncbi_isolation_source: Soil

ncbi_organism_name: Sphingobium sp. S8

ncbi_strain_identifiers: Sphingobium sp. strain S8

ncbi_submitter: University of Nairobi


ncbi_country: USA: California

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_country: Japan: Chubu

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: lake water

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Central Florida


ncbi_submitter: Institute of Biochemistry and Biophysics of the Polish Academy of Sciences


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Faculty of Veterinary Medicine, Chiang Mai University


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Streptomyces sioyaensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Baskent University Medical Faculty


ncbi_organism_name: Christiangramia sp. ASW11-125

ncbi_submitter: Shanxi Agricultural University


ncbi_organism_name: Sphingomonas tabacisoli

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Halanaerobiales bacterium


ncbi_organism_name: Staphylococcus capitis


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Roseiflexaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Escherichia coli O111:H11

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Bifidobacterium longum


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Paenibacillus lactis


ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Capital Institute of Pediatrics


ncbi_organism_name: Lactococcus formosensis subsp. formosensis

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hormaechei


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Uruguay

ncbi_isolation_source: methanogenic reactor granules

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Biological Research Institute "Clemente Estable"


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Tsinghua University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Affiliated Jinhua Hospital


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Komagataeibacter intermedius

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_organism_name: Oceanobacillus sp. M65

ncbi_submitter: Ondokuz Mayis University


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: USA

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: China: Jiuan Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: human gut

ncbi_organism_name: Enterococcus avium


ncbi_country: Chile

ncbi_isolation_source: salmon

ncbi_submitter: Shanghai Customs


ncbi_country: Australia: Great Barrier Reef

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Guangdong

ncbi_isolation_source: stool

ncbi_submitter: China CDC


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Mitsuokella multacida

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: EMG


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Eubacteriaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus australis ATCC 700641

ncbi_submitter: Baylor College of Medicine


ncbi_country: Canada

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_organism_name: Mariprofundaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospira sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Solirubrobacterales bacterium


ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Department of Laboratory Medicine


ncbi_organism_name: uncultured Mesorhizobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Sichuan

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile


ncbi_country: Japan

ncbi_organism_name: Mycobacterium paraintracellulare

ncbi_submitter: Niigata University School of Medicine


ncbi_assembly_name: IMG-taxon 2724679791 annotated assembly

ncbi_organism_name: Quadrisphaera granulorum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Bengbu

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_country: Cuba: Parque Nacional Topes de Collantes; Sierra del Escambray

ncbi_isolation_source: termite gut

ncbi_organism_name: Holosporaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: USA: Chicago; IL

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: China: Ningxia

ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Bacteroides graminisolvens

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Canada: Eureka; Ellsmere Island

ncbi_isolation_source: permafrost active-layer soil from the Canadian High Arctic

ncbi_organism_name: Planococcus halocryophilus Or1

ncbi_submitter: McGill University


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Clostridium phoceensis

ncbi_submitter: EMG


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: rectal swab

ncbi_organism_name: Chlamydia suis

ncbi_submitter: University of Zurich


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Netherlands

ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Pseudomonas sp. D8002

ncbi_submitter: Wageningen University & Research


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Acetobacter sp.

ncbi_submitter: Cleveland Clinic


ncbi_country: China: Shanghai

ncbi_isolation_source: bronchoalveolar lavage fluid

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Monash Unversity


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: lake water

ncbi_organism_name: Acidimicrobiaceae bacterium


ncbi_country: USA: Aurora; CO

ncbi_submitter: University of Colorado - Boulder


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Egypt: Alexandria

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Faculty of Pharmacy, Alexandria University


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: University of Exeter


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: USA: Iowa

ncbi_isolate: Large Clone

ncbi_isolation_source: n

ncbi_organism_name: Rickettsia rickettsii

ncbi_strain_identifiers: Iowa;Large Clone

ncbi_submitter: NIAID


ncbi_country: South Africa

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Kunming

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Streptomyces piniterrae

ncbi_submitter: School of life science


ncbi_country: Egypt

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_assembly_name: Gammaproteobacteria bacterium Ga0074134

ncbi_country: USA: Ann Arbor

ncbi_isolation_source: dual media filters at the Ann Arbor; Michigan drinking water treatment plant

ncbi_organism_name: Gammaproteobacteria bacterium Ga0074134

ncbi_submitter: University of Glasgow


ncbi_country: Colombia

ncbi_isolation_source: fecal sample

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Grupo de Investigaciones Microbiologicas - UR (GIMUR)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: EMG


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_isolation_source: sea water

ncbi_organism_name: gamma proteobacterium HTCC2207

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_submitter: Fraunhofer Chile Research Center for Systems Biotechnology Bio-Computing Division

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Piscirickettsiaceae;g__Piscirickettsia;s__Piscirickettsia salmonis;x__Piscirickettsia salmonis LF-89 = ATCC VR-1361


ncbi_country: USA:San Diego

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG12279

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Roseburia sp.


ncbi_country: USA: MO

ncbi_isolation_source: Heifers

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: CVM N59542F

ncbi_submitter: FDA


ncbi_assembly_name: Micromonospora sp. nov

ncbi_organism_name: Micromonospora sp. DPT

ncbi_strain_identifiers: DPT

ncbi_submitter: CSIR-IIIM


ncbi_submitter: Geneva University Hospitals


ncbi_country: USA: Massachusetts

ncbi_isolation_source: tongue scraping

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Marine Biological Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang University


ncbi_organism_name: Morganella morganii

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Argentina

ncbi_isolation_source: Osteomyelitis

ncbi_organism_name: Staphylococcus aureus DAR3175

ncbi_submitter: Broad Institute


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Roseomonas sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Italy: Panarea

ncbi_isolation_source: seawater from hydrothermal area 26

ncbi_organism_name: Rubinisphaera italica

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_organism_name: Conexibacter sp.


ncbi_country: Antarctica: Lake Abraxis; Long Peninsula; Vestfold Hills

ncbi_isolation_source: Saline Meromictic Lake

ncbi_organism_name: Synechococcus sp. CS-603

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_country: Australia: Sydney

ncbi_isolation_source: Oral cavity

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Sydney


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Glaciecola sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: United Kingdom

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, Zhejiang University school of Medicine


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Chlamydia psittaci

ncbi_submitter: Tokyo University of Agriculture and Technology


ncbi_organism_name: Christensenella sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Italy

ncbi_isolation_source: Skin Swab

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella sp. 116378

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_organism_name: Alistipes ihumii

ncbi_submitter: Washington University in Saint Louis


ncbi_assembly_name: freshwater MAG --- Umea_bin-02968

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: gut

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Roseivirgaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Hoylesella shahii

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: China

ncbi_organism_name: Proteus terrae subsp. cibarius

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Gaiellaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_country: New Zealand

ncbi_isolation_source: routine screen

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Flavonifractor plautii