ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Photobacterium damselae subsp. piscicida

ncbi_submitter: University of Miyazaki Faculty of Agriculture


ncbi_country: China: Xizang

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: fresh feces of yak

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_assembly_level: Scaffold

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Manhattan; KS

ncbi_isolation_source: Probiotic

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Kansas State University


gtdb_representative: t

ncbi_country: South Korea

ncbi_isolation_source: Plant

ncbi_organism_name: Quadrisphaera setariae

ncbi_refseq_category: reference genome

ncbi_submitter: Dongguk university

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Antarctica

ncbi_isolation_source: Antarctic lake sediment

ncbi_organism_name: bacterium

ncbi_submitter: Universidad de la Republica


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Paenarthrobacter sp. YAF11_1

ncbi_submitter: CCRP


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Ruthenibacterium lactatiformans


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bordetella bronchiseptica

ncbi_submitter: USDA-ARS


ncbi_organism_name: uncultured Coxiellaceae bacterium


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_assembly_level: Complete Genome

ncbi_submitter: USDA ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Opitutales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_organism_name: Streptomyces sp. NPDC007172

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bradyrhizobium oligotrophicum

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: EPFL


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Acidobacteriota bacterium


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Thiotrichales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_submitter: The University of Melbourne


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Faecousia sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Syntrophorhabdus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: DS-I Africa


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Bartonella sp. OC68QHHN

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Brucella abortus

ncbi_submitter: Faculty of Health Sciences


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4571_4 depth 0-3 cm

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_country: Italy: Milano

ncbi_isolation_source: Respiratory sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Genoa


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: traditional Thai fermented pork sausage

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Faculty of Science, Prince of Songkla University


ncbi_assembly_level: Chromosome

ncbi_country: France: paris

ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Institut Pasteur


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: addis ababa university


ncbi_country: Panama: Boquisco

ncbi_isolation_source: termite gut

ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: Friedrich Schiller University Jena


ncbi_country: Pacific Ocean

ncbi_isolation_source: oceanic bathypelagic zone

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: Imported pork meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Desulfotignum sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Democratic Republic of the Congo

ncbi_isolation_source: fecal sample

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Universite catholique de Louvain


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cepheid


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.


ncbi_country: India

ncbi_isolation_source: Fermented Fish

ncbi_submitter: Department of Biotechnology, India


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: deep-sea hydrothermal vent chimney at a depth of 2630 meters on the East-Pacific Rise

ncbi_organism_name: Marinitoga piezophila KA3

ncbi_submitter: JGI


ncbi_assembly_name: freshwater MAG --- Umea2p1_bin-0912

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: sand

ncbi_organism_name: Candidatus Thiosymbion oneisti

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Rhodoglobus sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: San Diego

ncbi_isolation_source: sputum sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: San Diego State University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: National Centre for Infectious Diseases


ncbi_submitter: Singapore General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. dysgalactiae


ncbi_organism_name: Vibrio atlanticus


gtdb_type_species_of_genus: t

ncbi_organism_name: Neoasaia chiangmaiensis

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: Northeast Forestry University


ncbi_submitter: University of Oxford


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Butyricimonas virosa

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Dorea sp.


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: China Center of Industrial Culture Collection

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_organism_name: Corynebacterium amycolatum

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences


ncbi_isolate: Fecal samples

ncbi_isolation_source: LBC

ncbi_strain_identifiers: Fecal samples


ncbi_country: Germany

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SurvCARE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Paenibacillus larvae

ncbi_submitter: Charles University


ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Shigella boydii Sb227

ncbi_submitter: Microbial Genome Center of ChMPH


ncbi_country: China

ncbi_organism_name: Salmonella enterica

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Lunds Universitet


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_country: France: Paris

ncbi_isolation_source: Rectal swab

ncbi_submitter: Saint-Louis Hospital


ncbi_assembly_name: freshwater MAG --- YR_bin-0336

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_country: Kenya

ncbi_organism_name: Bacteroidales bacterium UBA1630

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1630


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: University Medical Center Groningen


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: sewage

ncbi_organism_name: Klebsiella huaxiensis

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: USA: MN

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: South Korea: Jinju

ncbi_isolation_source: blood

ncbi_submitter: Korea Centers for Disease Control and Prevention


ncbi_assembly_name: Vibrio harveyi E385 Genome sequencing

ncbi_isolation_source: cage-cultured

ncbi_organism_name: Vibrio harveyi E385

ncbi_submitter: Third Institute of Oceanography, State Oceanic Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio harveyi;x__Vibrio harveyi E385


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: EMG


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Greece: Epirus

ncbi_isolation_source: cheese whey

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: Costa Rica

ncbi_organism_name: Leptospira santarosai

ncbi_submitter: INRS-Centre Armand-Frappier Sante Biotechnologie


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Pittsburgh


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Clemson University


ncbi_country: Brazil: Anavilhanas; AM

ncbi_isolation_source: Apterostigma fungus garden

ncbi_organism_name: Enterobacter sp. Ap-1006

ncbi_submitter: UW-Madison


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Candidatus Nanosynbacter sp.

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;g__Candidatus Nanosynbacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;g__Candidatus Nanosynbacter;x__unclassified Candidatus Nanosynbacter;s__Candidatus Nanosynbacter sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Foggia


ncbi_country: Poland: Pisz

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institiute


ncbi_isolation_source: empyema

ncbi_organism_name: Porphyromonas asaccharolytica DSM 20707

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas asaccharolytica;x__Porphyromonas asaccharolytica DSM 20707


ncbi_assembly_name: IMG-taxon 2622736525 annotated assembly

ncbi_organism_name: Kriegella aquimaris

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Texas

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South American MRSA Consortium


ncbi_organism_name: Megasphaera elsdenii T81

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptomyces atratus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: freshwater MAG --- Loclat_bin-13807

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_assembly_name: uncultured UBA10364 Flavobacteriales SW04_Bin10

ncbi_isolation_source: seawater

ncbi_submitter: iBB-IST


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Icahn School of Medicine


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Czech Republic

ncbi_isolation_source: cultured in Erlenmeyer flask

ncbi_organism_name: Caldimonas thermodepolymerans

ncbi_submitter: Brno University of Technology

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Candidatus Tisiphia;x__unclassified Candidatus Tisiphia;s__Candidatus Tisiphia endosymbiont of Ptychoptera albimana


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: USA

ncbi_organism_name: Escherichia coli EC1845

ncbi_submitter: Institute for Genome Sciences


ncbi_submitter: Institute for Clinical Pathology and Medical Research


ncbi_assembly_name: Salmonella enterica CVM N48677 v1.0

ncbi_country: USA: CT

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: EMG


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Brasilia


ncbi_country: Israel

ncbi_isolation_source: stool

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter sp. UBA3407

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Alabama

ncbi_isolation_source: rhizosphere of the salt marsh grasses

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Parabacteroides distasonis


ncbi_country: Poland: Bialowieza National Park

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: University of Bialystok


ncbi_country: China: Yushu Prefecture; Qinghai Province

ncbi_isolation_source: the intestinal contents

ncbi_organism_name: Aeromicrobium duanguangcaii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Italy: Bay of Fetovaia; Elba

ncbi_isolation_source: gill tissue of clam

ncbi_organism_name: Candidatus Thiodiazotropha endoloripes

ncbi_submitter: University of Vienna


ncbi_country: Viet Nam

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Frisingicoccus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Canada

ncbi_isolation_source: stool sample

ncbi_organism_name: Clostridioides difficile CD26A54_R

ncbi_submitter: Public Health Agency of Canada


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: BGI-Shenzhen


ncbi_country: Israel: Tel Aviv

ncbi_isolation_source: skin

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alistipes sp. UBA6068


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Veillonellaceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG239

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Salt Lake City

ncbi_organism_name: Corallococcus sp.

ncbi_submitter: Cleveland Clinic


ncbi_organism_name: Enterococcus sp. MSG3330

ncbi_submitter: Broad Institute


ncbi_country: Canada: Britsh Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: Czech Republic

ncbi_organism_name: Legionella moravica DSM 19234

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: retail deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Christian Medical College


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of Utah


ncbi_country: Thailand: Ubon; Pibul

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Cupriavidus oxalaticus

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Rhizobium tropici

ncbi_strain_identifiers: SEMIA 4079


ncbi_country: Singapore

ncbi_isolation_source: 30 sequencing batch reactor activited sludge day 294

ncbi_organism_name: Defluviicoccus sp.

ncbi_submitter: Activated sludge


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_assembly_name: IMG-taxon 2667527451 annotated assembly

ncbi_organism_name: Paenibacillus typhae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Democratic Republic of the Congo: Kinshasa

ncbi_organism_name: Providencia vermicola

ncbi_submitter: MEPHI, IRD, APHM, IHU-Mediterranee Infection, Marseille, France


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Mesorhizobium sp. M0189

ncbi_submitter: Washington State University


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Denmark: Slagelse

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Region Zealand


ncbi_country: China: Jiangxi Nanchang

ncbi_organism_name: Corynebacterium anserum

ncbi_submitter: China CDC


ncbi_submitter: Zhejiang University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: University of Chicago


ncbi_country: China: Hunan

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Flavobacterium sp. Sd200

ncbi_submitter: Beijing Academy of Agriculture and Forestry Science


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Brown University


ncbi_country: Germany

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: University Hospital Dresden


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_organism_name: Microbispora rosea

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Mozambique

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: FIOCRUZ


ncbi_country: USA: Green Canyon; Gulf of Mexico

ncbi_isolation_source: 10 Gulf of Mexico water column samples before the DWH oil spill

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: National Oceanic & Atmospheric Administration


ncbi_country: China: Zhejiang

ncbi_isolation_source: farm environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_submitter: McGill University


ncbi_isolation_source: Ground Turkey

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: Australia: Melbourne

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Biomedicine Discovery Institute


ncbi_organism_name: Helcococcus ovis

ncbi_submitter: University of Florida


ncbi_country: China: Henan

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University hospital Lubeck


ncbi_country: China

ncbi_organism_name: Bacillus cereus

ncbi_submitter: China Agricultural University


ncbi_organism_name: Buchananella hordeovulneris

ncbi_submitter: China CDC


ncbi_isolation_source: gastric lavage

ncbi_organism_name: Mycobacterium gordonae

ncbi_submitter: Uppsala University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: PA

ncbi_isolation_source: Milk filter (dairy cow farm)

ncbi_submitter: USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Mixta calida


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: France: Paris

ncbi_isolation_source: skin

ncbi_submitter: INSERM


ncbi_country: Viet Nam: Hanoi

ncbi_submitter: University of Oxford


ncbi_country: Canada: Douglas Channel

ncbi_isolation_source: dilbit-coated clay beads in seawater

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: National Research Council Canada


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_submitter: SC


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Chile: Santiago

ncbi_isolation_source: drain fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_country: Switzerland: Bern

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bern


ncbi_country: China: Xuzhou

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_country: Austria: Kremesberg 11

ncbi_isolation_source: rumen epithelial tissue

ncbi_organism_name: Campylobacter sp. CN_EL1

ncbi_strain_identifiers: Cn EL1

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_country: Denmark

ncbi_isolation_source: Milk

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Chr. Hansen


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Taiwan

ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Vibrio sp. Vb2908

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Bacillus bombysepticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre pasteur du Cameroun


ncbi_country: USA: San Diego; Sunset Cliffs

ncbi_isolation_source: Sea snail

ncbi_organism_name: Pseudoalteromonas sp. MMG010

ncbi_submitter: San Diego State University


ncbi_country: Canada

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: SiChuan

ncbi_isolation_source: pig farm

ncbi_organism_name: Streptococcus suis

ncbi_submitter: China Agriculture University


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: blood


ncbi_country: Peru: Iquitos

ncbi_organism_name: Leptospira licerasiae str. MMD4847

ncbi_submitter: J. Craig Venter Institute


ncbi_country: USA: Vershire; Ely Copper Mine

ncbi_isolation_source: sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Institute for Clinical Pathology and Medical Research


ncbi_submitter: University of Oxford


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolate: AOP31_B2_surf _bin _11

ncbi_organism_name: Halomonas sp.

ncbi_strain_identifiers: AOP31_B2_surf _bin _11

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Chlamydiales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;x__environmental samples;s__uncultured Chlamydiales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculty of Pharmacy, Cairo University


ncbi_organism_name: Symbiopectobacterium sp.

ncbi_submitter: Faculty of Science, University of South Bohemia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Symbiopectobacterium;x__unclassified Symbiopectobacterium;s__Symbiopectobacterium sp.


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_organism_name: Anaerostipes sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Thiothrix sp.


ncbi_organism_name: Mycoplasma sp. VS299A

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Nonlabens sp. Asnod3-A02

ncbi_submitter: Station Biologique de Roscoff


ncbi_organism_name: uncultured Maribacter sp.


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: cold seep

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: uncultured bacterium


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert bare soil

ncbi_organism_name: Chloroflexia bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: uncultured Legionellaceae bacterium


ncbi_organism_name: Luteimicrobium sp. NPDC057192

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;x__Micrococcales incertae sedis;g__Luteimicrobium;x__unclassified Luteimicrobium;s__Luteimicrobium sp. NPDC057192


ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC058092


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: pet food (BARF)

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Zurich


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hopital Bicetre


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_isolation_source: tomato

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Zhejiang A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: South Korea: Sunchang

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Thiomicrorhabdus chilensis

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: Colombia: Santa Marta bay

ncbi_isolation_source: coral reef

ncbi_organism_name: Stappia indica

ncbi_strain_identifiers: EBBD 17.2

ncbi_submitter: National University of Colombia


ncbi_country: Austria

ncbi_isolation_source: stable grass silage

ncbi_submitter: CeBiTec

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus;s__Lentilactobacillus buchneri;sb__Lentilactobacillus buchneri subsp. silagei;x__Lentilactobacillus buchneri subsp. silagei CD034


ncbi_organism_name: Escherichia coli

ncbi_submitter: EMG


ncbi_country: Malaysia: Kuala Kangsar; Perak

ncbi_isolation_source: banana plantation infected with Banana Blood Disease

ncbi_organism_name: blood disease bacterium A2-HR MARDI

ncbi_strain_identifiers: A2-HR MARDI

ncbi_submitter: MARDI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia;x__Ralstonia solanacearum species complex;s__Ralstonia syzygii;sb__Ralstonia syzygii subsp. celebesensis;x__blood disease bacterium A2-HR MARDI


ncbi_country: China: Yunnan

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yunnan Provincial Centre for Disease Control and Prevention


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Porphyromonas sp. COT-290 OH3588

ncbi_submitter: UC Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;x__unclassified Porphyromonas;s__Porphyromonas sp. COT-290 OH3588


ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Laboratory of Applied Microbiology, Department of Food and Cosmetic Science, Faculty of Bioindustry, Tokyo University of Agriculture


ncbi_country: USA: California

ncbi_strain_identifiers: UCI 15

ncbi_submitter: USDA-ARS


ncbi_isolation_source: blood

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_isolation_source: Feral swine feces

ncbi_submitter: University of Florida


ncbi_country: USA: South Carolina

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas perforans


ncbi_organism_name: Coprococcus phoceensis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Gothenburg

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Russia:Cape Chukochii; East Siberian Sea

ncbi_isolation_source: permafrost sediment

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Princeton University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_submitter: Bioinformatics & Microbial Genomics, State Key Laboratory of Microbial Metabolism, Shanghai Jiaotong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae;x__Klebsiella pneumoniae subsp. pneumoniae HS11286


ncbi_country: Sri Lanka: Batticaloa

ncbi_isolate: Melioidosis patient

ncbi_organism_name: Burkholderia pseudomallei

ncbi_strain_identifiers: Melioidosis patient;BPs133

ncbi_submitter: General Sir John Kotelawala Defence Uinversity


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Dongiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: intestinal and liver

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Anaerobiospirillum sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Roseovarius sp. UBA7808

ncbi_submitter: University of Queensland


ncbi_assembly_name: freshwater MAG --- T7_bin-490

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Viet Nam: Nam Dinh

ncbi_isolation_source: Environment

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: China: Chifeng

ncbi_organism_name: Vibrio metschnikovii

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_assembly_name: IMG-taxon 2619618962 annotated assembly

ncbi_organism_name: Alloyangia pacifica

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Lewinellaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Rhodothermales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Rhodothermota;c__Rhodothermia;o__Rhodothermales;x__environmental samples;s__uncultured Rhodothermales bacterium


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0025

ncbi_submitter: Broad Institute


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Wildermuthbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wildermuthiibacteriota;x__unclassified Candidatus Wildermuthbacteria;s__Candidatus Wildermuthbacteria bacterium


ncbi_country: Germany

ncbi_isolation_source: wound swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: China: Guangdong

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Helmholtz Centre for Infection Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_country: South Korea

ncbi_isolation_source: food

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Muenster University Hospital


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: University of Duisburg Essen


ncbi_country: Lebanon

ncbi_strain_identifiers: VRE 25

ncbi_submitter: Lebanese American University


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Thermoflexus sp.

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Synechococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Opacimonas sp.

ncbi_submitter: German Federation for Biological Data


ncbi_country: South Korea: Jeonbuk Province

ncbi_isolation_source: Sea water

ncbi_organism_name: Comamonadaceae bacterium M7527

ncbi_submitter: Chung-Ang University


ncbi_organism_name: Ekhidna sp.

ncbi_submitter: University of Southern California


ncbi_assembly_name: freshwater MAG --- Loc090116-4m_bin-1195

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: uncultured Lachnospira sp.


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Hangzhou

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_country: USA: New York

ncbi_isolation_source: blood

ncbi_organism_name: Campylobacter ureolyticus

ncbi_submitter: University of Rochester Medical Center


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Pig feces

ncbi_organism_name: Bifidobacterium longum subsp. suis

ncbi_submitter: University of Parma


ncbi_country: USA: Dallas; Texas

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Texas at Dallas


ncbi_country: USA: Hickory Corners; MI

ncbi_isolation_source: soil

ncbi_organism_name: Micrococcus sp. KBS0714

ncbi_submitter: Indiana University


ncbi_organism_name: Streptomyces noursei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Mycobacterium tuberculosis KT-0069

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen people's hospital


ncbi_isolation_source: intestine

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Kunming University of Science and Technology


ncbi_country: China

ncbi_isolation_source: Sea-fish

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_country: Canada: Atlantic

ncbi_isolation_source: Herd 418

ncbi_organism_name: Staphylococcus cohnii

ncbi_strain_identifiers: SNUC 2486

ncbi_submitter: University of Calgary


ncbi_country: China: Yangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou University


ncbi_organism_name: Vibrio metschnikovii

ncbi_submitter: FDA-CVM


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Texas A&M University


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Australia: Victoria

ncbi_isolation_source: dairy farm

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Northumbria University


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Sichuan Normal University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Hong Kong

ncbi_isolation_source: sediment

ncbi_organism_name: Escherichia sp. E13S3

ncbi_submitter: The Hong Kong University of Science and Technology


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Bacteroidales bacterium UBA1714

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1714


ncbi_isolation_source: pre-scapular

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_country: Bangladesh

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: China: Guangdong

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: hospital

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: clinical isolate

ncbi_submitter: Shaanxi University of Chinese Medicine


ncbi_country: Lithuania

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Kenya Medical Research Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Salinisphaerales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Ruegeria profundi

ncbi_submitter: Shenzhen University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Avimuribaculum pullicola

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Avimuribaculum;s__Candidatus Avimuribaculum pullicola


ncbi_organism_name: Cutibacterium granulosum

ncbi_submitter: Tianjin Nankai Hospital


ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_country: Spain: Hospital de Sabadell; Barcelona; Catalonia

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Facultat de Farmacia i Ciencies de l'Alimentacio; Universitat de Barcelona


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Opitutia bacterium UBA4440

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__unclassified Opitutia;s__Opitutia bacterium UBA4440


ncbi_country: China: Mianyang

ncbi_isolation_source: mud

ncbi_organism_name: Ruminococcaceae bacterium UBA5498


ncbi_country: Canada: Lacombe

ncbi_organism_name: Aerococcus urinaeequi

ncbi_submitter: AAFC


ncbi_country: United Kingdom: Leicester

ncbi_isolation_source: sputum

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Leicester


ncbi_organism_name: Melioribacteraceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: marine solar saltern sediment

ncbi_organism_name: Halofilum ochraceum

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: City University of Hong Kong


ncbi_country: USA:Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: China: Xuzhou

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Lubbock; TX

ncbi_isolation_source: indwelling urinary catheter

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: South Korea

ncbi_isolation_source: Gut of an ablaone

ncbi_organism_name: Flavobacterium sp. N2155

ncbi_submitter: Jeju National University


ncbi_country: USA: Squaxin Island; Washington

ncbi_isolation_source: kelp blade surface swab

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: University of Washington-Seattle


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: University of Oxford


ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_submitter: Ruijin Hospital


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Chryseobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Institute of Microbiology


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hackensack-Meridian Health Center for Discovery and Innovation


ncbi_country: USA: CT

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_country: USA: Texas

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_country: China: Jiangxi; Yinshan

ncbi_organism_name: Sulfobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;x__unclassified Sulfobacillus;s__Sulfobacillus sp.


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Panama: Panama City

ncbi_organism_name: Candidatus Stammera capleta

ncbi_submitter: Emory University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Stammera;s__Candidatus Stammera capleta


ncbi_organism_name: Eubacterium coprostanoligenes

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Cyanobacteria bacterium UBA7733

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium UBA7733


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Brazil: Eastern Amazon

ncbi_isolation_source: pasture soil

ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: Center for Nuclear Energy in Agriculture - University of Sao Paulo


ncbi_country: Singapore: Jurong West

ncbi_isolation_source: activated sludge

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Streptomyces sp. NPDC006460

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Nocardia tengchongensis


ncbi_country: Italy: Florence

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Florence


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: hospital wastewater

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: Japan:Hiroshima; Higashi-Hiroshima

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Bioconversion Group, Research Institute for Sustainable Chemistry, Materials and Chemistry, National Institute of Advanced Industrial Science and Technology


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Argentina: San Carlos Sur

ncbi_isolation_source: first pond of the CYC serial dairy industry stabilization pond system

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: INTA


ncbi_organism_name: Mucispirillum schaedleri


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium pseudodiphtheriticum

ncbi_submitter: Duke University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_submitter: Fujian Medical University Union Hospital


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Comamonas sp.

ncbi_submitter: Colorado State University


ncbi_country: China: Shanghai

ncbi_isolation_source: chicken feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: China CDC


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: EMG


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_strain_identifiers: BCG Pasteur 1173P2

ncbi_submitter: Mycobacterium bovis sequencing teams

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis;x__Mycobacterium tuberculosis variant bovis BCG;x__Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2


ncbi_country: China: Beijing

ncbi_isolation_source: anammox reactor sludge

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Peking University


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Clostridium fessum


ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: cold seep

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: USA: Damariscotta River in front of the Bigelow Laboratory for Ocean Sciences

ncbi_isolation_source: four week timepoint of microcosm treated with photo-oxidized crude oil after inoculation with natural surface seawater; biological replicate 1

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Blautia producta

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterobacter hormaechei

ncbi_strain_identifiers: DR 2324-CEF

ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Reinekea sp.

ncbi_submitter: University of East Anglia


ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Solibacteraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Neorhizobium sp. DAR64861/K0K2

ncbi_submitter: The University of Adelaide


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Mycolicibacterium septicum

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Sphingomonas sp. DT-51

ncbi_submitter: IMEDEA


ncbi_organism_name: Micromonospora sp. NBC_00898

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Streptomyces griseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: freshwater MAG --- LaPlata-1m-b_bin-804

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_submitter: Zhejiang University


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Firmicutes bacterium AF36-3BH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium AF36-3BH


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Victoria

ncbi_isolation_source: dairy farm

ncbi_organism_name: Listeria innocua

ncbi_submitter: CSIRO


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Eisenbergiella sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Candidatus Saccharimonadia bacterium

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;x__unclassified Candidatus Saccharimonadia;s__Candidatus Saccharimonadia bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Affiliated Jinhua Hospital


ncbi_organism_name: Segatella copri

ncbi_submitter: University of Manitoba


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: Finland: Northern Finland; Hietatievat / Kalmakaltio

ncbi_isolate: HIE bin25

ncbi_isolation_source: soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: HIE bin25

ncbi_submitter: Monash University


ncbi_country: Germany: Kyffhaeuserland; Seega

ncbi_isolation_source: fecal sample

ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Friedrich-Loeffler-Institute, Federal Research Institute for Animal Health


ncbi_organism_name: Actinocrinis sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 1 / A; 5m depth; 0.2 filter

ncbi_organism_name: Chlamydiae bacterium GWA2_50_15

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiae bacterium GWA2_50_15


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan: Toyama

ncbi_isolation_source: mesenteric lymph node

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Aichi Prefectural Chuo Livestock Hygiene Service Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: aquifer sediment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium GW2011_GWD2_36_14


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Acholeplasmatales bacterium

ncbi_submitter: Biomin Research Center


ncbi_country: India: Kolkata

ncbi_isolation_source: Blood sample from neonates

ncbi_submitter: National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Bibersteinia trehalosi Y31

ncbi_submitter: Washington State University


ncbi_organism_name: Micromonospora sp. NPDC093244

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Paraburkholderia sp.


ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Poultry Farm

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: South Korea: Jinju

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_country: USA: MS

ncbi_isolation_source: Leg wound

ncbi_organism_name: Staphylococcus aureus DAR3907

ncbi_submitter: Broad Institute


ncbi_country: South Korea

ncbi_strain_identifiers: BGSC 4AL1

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar coreanensis


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: Eritrea: Red Sea coast

ncbi_isolation_source: sediment

ncbi_organism_name: Phaeocystidibacter marisrubri

ncbi_submitter: University of Tasmania


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: chicken

ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_country: Italy: Naples; Campi Flegrei; Pisciarelli hydrothermal system

ncbi_isolation_source: acidic hydrothermal system

ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Faeces


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;s__Candidatus Magasanikbacteria bacterium RIFCSPLOWO2_02_FULL_44_11


ncbi_submitter: The University of Texas Health Sciences Center


ncbi_country: Greece: Thessaloniki

ncbi_isolation_source: wound

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_organism_name: Butyricimonas paravirosa

ncbi_submitter: Universite catholique de Louvain


ncbi_country: USA: Connecticut

ncbi_isolation_source: single protist cell from termite hindgut

ncbi_organism_name: Candidatus Endomicrobiellum agilis

ncbi_submitter: University of Connecticut


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Canada: Axel Heiberg Island

ncbi_isolation_source: Ice-wedge polygon

ncbi_organism_name: Hymenobacter nivis

ncbi_submitter: Universite Laval


ncbi_country: Singapore: Jurong East

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Gottesmanbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;x__unclassified Candidatus Gottesmanbacteria;s__Candidatus Gottesmanbacteria bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Staphylococcus sp. FSL K6-0099

ncbi_submitter: Penn State


ncbi_country: Netherlands

ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: AMSTERDAM UMC


ncbi_organism_name: Streptomyces sp. NPDC029003

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Staphylococcus aureus T31892

ncbi_submitter: Broad Institute


ncbi_country: Hong Kong

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Ignavibacterium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Pseudonocardia hydrocarbonoxydans

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_organism_name: Yersinia pestis subsp. microtus

ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. microtus


ncbi_organism_name: Flavobacteriaceae bacterium


ncbi_country: Italy: San Martino Buonalbergo (VR)

ncbi_isolation_source: intestine content

ncbi_organism_name: Clostridium botulinum C/D

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_assembly_name: freshwater MAG --- Day6-2_bin-321

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Oscillibacter ruminantium


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Verrucomicrobiaceae bacterium


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli KTE87


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Neisseria sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_submitter: Hanzhong Central Hospital


ncbi_country: USA

ncbi_isolation_source: Feral swine feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: China: Sichuan; Dujiangyan; Xujia

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Novogene

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis NM606

ncbi_submitter: IGS


ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: wastewater treatment reactor

ncbi_organism_name: Thauera sp. 27

ncbi_submitter: Norwegian University of Life Sciences


ncbi_organism_name: uncultured Haliea sp.

ncbi_submitter: EMG


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Tissue

ncbi_organism_name: Acinetobacter junii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Aeromonas sp. 43P

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_country: China: Heilongjiang

ncbi_isolation_source: gut

ncbi_submitter: Harbin Medical University


ncbi_country: Senegal: Dahra

ncbi_isolation_source: Groundnut Field

ncbi_organism_name: Bradyrhizobium sp. ISRA443

ncbi_submitter: IRD


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Rhodophyticola sp.

ncbi_submitter: The University of Melbourne


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Toho University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Canada: Scotian Shelf

ncbi_isolation_source: pooled samples from sponge host and sea water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: SponGES


ncbi_organism_name: Ketobacter sp.

ncbi_submitter: Yantai University


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Tunisia

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax


ncbi_assembly_name: IMG-taxon 2597490353 annotated assembly

ncbi_organism_name: Azotobacter beijerinckii

ncbi_strain_identifiers: DSM 282

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Distal colon

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: Taiwan

ncbi_submitter: Chang Gung Memorial Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Shek Wu Hui WWTPs_97 WWTPs influent

ncbi_organism_name: Shigella flexneri

ncbi_submitter: The University of Hong Kong


ncbi_country: Germany

ncbi_organism_name: Borreliella afzelii

ncbi_strain_identifiers: PKr

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_organism_name: Morganella morganii

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Candidatus Azoamicus viridis

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__;f__Candidatus Azoamicaceae;g__Candidatus Azoamicus;s__Candidatus Azoamicus viridis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Azoamicaceae;g__Candidatus Azoamicus;s__Candidatus Azoamicus viridis


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Saprospiraceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Legionella pneumophila subsp. pneumophila

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Tang lab


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_country: USA: Cambridge; MA

ncbi_isolation_source: cephalic recording chamber

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University,Shanghai, China


ncbi_organism_name: Escherichia albertii

ncbi_strain_identifiers: NCTC 9362

ncbi_submitter: CDC


ncbi_organism_name: Roseovarius indicus


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Pasteur institute of Tunisia


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Alar crease swab

ncbi_organism_name: Dietzia cinnamea

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: UNITED STATES ARMY MEDICAL RESEARCH DIRECTORATE-KENYA


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: Synovial fluid

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: sink drain

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: NIH


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Canada: British Columbia;Richmond

ncbi_isolation_source: irrigation ditch water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: South Korea: Jinju

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Zhejiang

ncbi_isolation_source: food

ncbi_organism_name: Salmonella sp. zj-f75

ncbi_submitter: Shenzhen People's Hospital


ncbi_country: France: Paris

ncbi_isolation_source: Oropharinx

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: coastal sediment

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: Netherlands

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: spa type t13595

ncbi_submitter: University of Groningen


ncbi_country: Australia: Adelaide

ncbi_isolation_source: sinus

ncbi_submitter: Adelaide Medical School


ncbi_isolation_source: Environmental

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hackensack-Meridian Health Center for Discovery and Innovation


ncbi_organism_name: Stenotrophomonas acidaminiphila


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Treponema sp.

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: Lebanon

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Lebanese American University


ncbi_country: Germany

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Leibniz Institute DSMZ-German Collection of Microrganisms and Cell Cultures


ncbi_strain_identifiers: Bir 417

ncbi_submitter: SC


ncbi_country: USA: TX

ncbi_isolation_source: swine feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Texas Tech University


ncbi_isolate: Streptococcus mitis

ncbi_organism_name: Streptococcus mitis

ncbi_strain_identifiers: Streptococcus mitis

ncbi_submitter: UNIVERSITY COLLEGE LONDON


ncbi_country: Ukraine: Kyiv region

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas marginalis

ncbi_submitter: Zabolotny Institute of Microbiology and Virology of NAS of Ukraine


ncbi_country: Niger

ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis 2003051

ncbi_submitter: IGS


ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: University of Surrey


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Beijing

ncbi_isolation_source: patient with infection

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: District of Columbia

ncbi_isolation_source: urine

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: Methylobacillus sp.

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_country: China: Hunan

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH12087

ncbi_submitter: South China Agricultural University


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Tannerella sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Switzerland

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Agroscope, Microbial Food Safety


ncbi_country: USA: California

ncbi_strain_identifiers: UCI 32

ncbi_submitter: USDA-ARS


ncbi_organism_name: Opitutales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: France

ncbi_isolate: commensal strain from anonymous patient (individual 1)

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: INRA Toulouse


ncbi_country: Australia: WA; Canna

ncbi_organism_name: Mesorhizobium sp. CA14

ncbi_submitter: Curtin University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: brain

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: bacterium


ncbi_organism_name: Intestinimonas sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: National Institute for Public Health and the Environment


ncbi_country: USA: WA

ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Chicago


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Ruminococcoides bili

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Sphingobacterium thalpophilum


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Tidjanibacter sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University