ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Amesiibacteriota;s__Candidatus Amesbacteria bacterium RIFCSPHIGHO2_12_FULL_48_14


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_organism_name: Pleomorphochaeta sp. DL1XJH-081

ncbi_submitter: Shanghai JiaoTong University


gtdb_representative: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: CSIR- National Environmental Engineering Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Belgium

ncbi_organism_name: Brevibacterium paucivorans

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Escherichia coli

ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_organism_name: Morganella morganii

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Eubacterium ramulus


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: Ireland: Johnstown Castle; Wexford

ncbi_isolation_source: Grass with Chicken Manure

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: GP T1 EMB CEF 2

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Escherichia sp. WS522

ncbi_submitter: Center for Disease Control and Prevention


ncbi_country: USA: MA; Boston

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: Nepal

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium sp. NLR11b

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_isolation_source: healthy adult 3C

ncbi_organism_name: Clostridium sp. 27_14


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: the seqafrica consortium


ncbi_country: China: Shandong

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China agricultural university


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Oxford


ncbi_country: Japan

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_country: USA: Seattle

ncbi_isolation_source: sputum of cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Kenya: Laikipia

ncbi_isolation_source: Camel

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Australia: Gold Coast

ncbi_isolation_source: freshwater

ncbi_organism_name: Microcystis aeruginosa CS-1036

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_country: China: Shenzhen

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: BGI


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Ammonium sulfate bioreactor

ncbi_organism_name: Pseudonocardia sp. 73-21

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: blood

ncbi_submitter: OHSU


ncbi_country: USA: Athens; GA

ncbi_isolation_source: cecum

ncbi_submitter: Colorado State University


ncbi_organism_name: Actinomycetospora atypica

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: United Kingdom:England

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Microbacterium thalassium

ncbi_strain_identifiers: VKM Ac-2084

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Simonsiella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA

ncbi_organism_name: Pseudomonas amygdali pv. morsprunorum

ncbi_strain_identifiers: ICMP 568

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. morsprunorum


ncbi_organism_name: Glaesserella parasuis

ncbi_strain_identifiers: N

ncbi_submitter: Rosselkhoznadzor The Russian State Center for Animal Feed and Drug Standardization and Quality


ncbi_isolation_source: lake water

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: India: Assam; Guwahati

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Staphylococcus nepalensis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: China: Jiangxi

ncbi_isolation_source: soil

ncbi_organism_name: Myxococcus stipitatus

ncbi_submitter: Jiangxi Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Toronto

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_organism_name: Cronobacter dublinensis subsp. dublinensis

ncbi_submitter: University of Wyoming


ncbi_country: Portugal

ncbi_isolation_source: mining residue

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: University of Coimbra


ncbi_organism_name: Azonexus sp.

ncbi_submitter: Xiamen University


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Rhizobiaceae group bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;x__environmental samples;s__uncultured Rhizobiaceae group bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: BGI-Shenzhen


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Agharkar Research Institute


ncbi_organism_name: Staphylococcus simulans

ncbi_submitter: Mahidol University


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Medicines Directorate


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: uncultured Pelagibacterales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: the seqafrica consortium


ncbi_country: Germany: Koln

ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_assembly_name: Rumen uncultured genome RUG535

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Polyangia bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_level: Chromosome

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Cornell University


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: Sorangium sp. So ce590

ncbi_strain_identifiers: So ce590

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce590


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Faecalimonas sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: DS-I Africa


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Waltera sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Pelagibacteraceae bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__unclassified Candidatus Pelagibacteraceae;s__Candidatus Pelagibacteraceae bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Slackia isoflavoniconvertens


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: McMaster University


ncbi_organism_name: Bacillus cereus group sp. BCN160

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BCN160


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_isolation_source: groundwater

ncbi_organism_name: Cyanobacteria bacterium UBA9971

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium UBA9971


ncbi_isolation_source: human gut

ncbi_organism_name: Bacillota bacterium


ncbi_country: Denmark: South Greenland; Kap Hegh

ncbi_isolate: KAP bin19

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: KAP bin19

ncbi_submitter: Monash University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Collinsella sp.


ncbi_organism_name: Herbaspirillum huttiense

ncbi_submitter: Shenzhen Second People's Hospital


ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter;x__Citrobacter freundii complex;x__unclassified Citrobacter freundii complex;s__Citrobacter freundii complex sp. 2024EL-00225


ncbi_isolate: Bacillus pumilus NRS576

ncbi_organism_name: Bacillus safensis

ncbi_strain_identifiers: Bacillus pumilus NRS576

ncbi_submitter: CBM


ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;x__environmental samples;s__uncultured candidatus Brocadiaceae bacterium


ncbi_isolate: SPRUCE 437

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_strain_identifiers: SPRUCE 437

ncbi_submitter: Georgia Institute of Technology


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Polyangia bacterium

ncbi_submitter: Inha University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_01_FULL_39_8


ncbi_assembly_name: GEN_BGC Atlantic-Pacific 2011 bin.40 MAG

ncbi_isolate: bin.40 MAG

ncbi_isolation_source: North Pacific

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_strain_identifiers: bin.40 MAG

ncbi_submitter: IDAEA-CSIC


ncbi_country: Australia: Victoria

ncbi_isolation_source: dairy farm

ncbi_organism_name: Listeria innocua

ncbi_submitter: CSIRO


ncbi_isolation_source: Faeces

ncbi_organism_name: Enterocloster aldenensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: acinetobacter baumannii isolate  strainF

ncbi_isolation_source: tracheostoma

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: F

ncbi_submitter: UNIVERSITY OF WARWICK


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Spain: Madrid

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_country: China: Heihe; Heilongjiang

ncbi_isolation_source: soil

ncbi_organism_name: Bradyrhizobium sp. U87765 SZCCT0048

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Crew Resupply Vehicle

ncbi_isolation_source: CRV environmental surface

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: marine

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_submitter: Tarim University


ncbi_country: Brazil

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: China: Ningxia

ncbi_isolation_source: chicken cloacal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Arthrobacter sp. WCS2018Hpa-5b

ncbi_submitter: Utrecht University


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Michigan


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Shanxi

ncbi_isolation_source: Daqu

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Alberta

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Argentina: Tucuman

ncbi_isolation_source: Argentinean dry fermented sausages

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: CRL 681

ncbi_submitter: CERELA


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Pollutiaquabacter sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Candidatus Pollutiaquabacterales;f__Candidatus Pollutiaquabacteraceae;g__Candidatus Pollutiaquabacter;x__unclassified Candidatus Pollutiaquabacter;s__Candidatus Pollutiaquabacter sp.


ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia sp. BIOML-A20


ncbi_country: Canada: Gatineau; Quebec

ncbi_organism_name: Bradyrhizobium barranii subsp. barranii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolate: QRPPW

ncbi_isolation_source: nasopharynx


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Thermoguttaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter japonicus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Mucispirillum schaedleri


ncbi_country: China: Zhangpu; Fujian

ncbi_isolation_source: shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Dalian Ocean University


ncbi_country: Denmark: Copenhagen

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Region Zealand


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: surface water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: College of Basic Medical Science


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Kenya: Nairobi

ncbi_isolation_source: Vaginal discharge

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Indo-Africa dengue sequencing, vaccine development and capacity building


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: United Kingdom: Scotland; Aberdeen; Scottish Rural College (SRUC) Craibstone

ncbi_isolation_source: agricultural soil; 12C-CH4 incubated pH 4.5 or pH 7.5; selected DNA (low %GC) through ClCs fractionation

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Ecole Centrale de Lyon


ncbi_submitter: Baskent University Medical Faculty


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: Japan

ncbi_isolation_source: Orchardgrass silage

ncbi_organism_name: Loigolactobacillus iwatensis

ncbi_submitter: Northeast Agricultural University


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Gillisia sp.

ncbi_submitter: McGill University


ncbi_country: China: Beijing

ncbi_isolation_source: sheep meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: Spine pressure sore

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan Hospital of Fudan University


ncbi_country: Pakistan

ncbi_isolation_source: bedside rail in hospital intensive care unit

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China: Mianyang

ncbi_isolation_source: mud

ncbi_organism_name: Bacteroidales bacterium UBA5487

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA5487


ncbi_country: USA: California; Alameda County

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Phocaeicola sartorii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: Deciduous woodland; University campus

ncbi_organism_name: Pedobacter sp.

ncbi_submitter: University of East Anglia


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: University of Calgary


ncbi_country: Bangladesh: Comilla district

ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: University of California Davis


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: Blood

ncbi_organism_name: Enterococcus faecalis EnGen0068

ncbi_submitter: Broad Institute


ncbi_organism_name: Dialister invisus

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_country: Hong Kong

ncbi_isolation_source: Stanley WWTPs_13 WWTPs influent

ncbi_organism_name: Escherichia coli


ncbi_country: Thailand

ncbi_isolation_source: Poultry Meat

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Mahidol University


ncbi_organism_name: uncultured Sphingopyxis sp.

ncbi_submitter: EMG


ncbi_organism_name: Mucilaginibacter sp. 5C4

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_organism_name: Yersinia pestis CMCC11001

ncbi_submitter: Beijing Genomics Institute


ncbi_country: Japan: Chubu

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_isolation_source: tonsil swab

ncbi_submitter: Huazhong Agricultural University


ncbi_country: India

ncbi_isolation_source: blood

ncbi_submitter: JSS Academy of Higher Education & Research


ncbi_organism_name: Streptomyces malaysiensis

ncbi_submitter: nanjing university


ncbi_country: USA: Illinois

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium celatum

ncbi_submitter: University of Trento


ncbi_organism_name: Paraconexibacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Florida

ncbi_isolation_source: freshwater

ncbi_organism_name: Enterococcus faecalis FL2

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp. AM34-11AC

ncbi_submitter: BGI


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Paenibacillus jamilae

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Paenibacillus sp. FSL P4-0184

ncbi_submitter: Penn State


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Firestoneibacteriota;x__unclassified Candidatus Firestoneibacteriota;s__Candidatus Firestoneibacteriota bacterium


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1425

ncbi_submitter: Broad Institute


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Nacional Mayor de San Marcos


ncbi_isolation_source: Swine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_isolation_source: seawater

ncbi_organism_name: Photobacterium angustum

ncbi_submitter: FDA/CFSAN


ncbi_country: India: Thamaraikulam; Kanyakumari

ncbi_isolation_source: solar saltern

ncbi_organism_name: Bacillus sp. SA1-12

ncbi_submitter: Institute of Microbial Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. SA1-12


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Fimbriimonadales bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: Monash University


ncbi_country: USA: Maryland; Bethesda

ncbi_isolation_source: leg

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Ginsengibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolate: metabat2_coassembly_bwa.459 MAG

ncbi_organism_name: Candidatus Choladousia intestinavium

ncbi_strain_identifiers: metabat2_coassembly_bwa.459 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Choladousia;s__Candidatus Choladousia intestinavium


ncbi_country: USA: Mount Olive; NC

ncbi_isolation_source: cucumber fermentation brine

ncbi_organism_name: Pediococcus ethanolidurans

ncbi_submitter: USDA-ARS


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0018


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: wastewater plant

ncbi_organism_name: Chryseobacterium bernardetii

ncbi_submitter: Korea university


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Kitasatosporales;f__Streptomycetaceae;g__Streptomyces;s__Streptomyces avermitilis;x__Streptomyces avermitilis MA-4680 = NBRC 14893


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: University of Maryland Baltimore


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: UNICAMP


ncbi_isolation_source: wound exudate of bone fracture from a Chinese 76-year-old male

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Majorbio Bio-pharm Technology Co.,Ltd.


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Kennedy Institute of Rheumatology, University of Oxford


ncbi_country: China: YunNan

ncbi_isolation_source: plant

ncbi_organism_name: Conexibacter sp. CPCC 205762

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Wyoming

ncbi_isolation_source: Aquatic Environment

ncbi_submitter: University of Wyoming


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Finniella inopinata

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Yellow Sea

ncbi_isolation_source: marine sediment sample taken at a water depth of 50 meters

ncbi_organism_name: Streptomyces sp. AA0539

ncbi_submitter: Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Ruthenibacterium sp.

ncbi_submitter: China Agricultural University


ncbi_country: Switzerland: St.Gallen

ncbi_isolation_source: skin

ncbi_submitter: Center for Laboratory Medicine


ncbi_submitter: The University of Texas at San Antonio


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_organism_name: Dialister sp.

ncbi_submitter: UIUC


ncbi_country: Russia: Sakhalin; Daginskiye Thermal Springs

ncbi_isolation_source: enrichment culture from terrestrial mud volcano

ncbi_organism_name: Candidatus Saccharicenans sp.

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;x__unclassified Candidatus Saccharicenans;s__Candidatus Saccharicenans sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Candidatus Coprenecus avistercoris

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;x__Rikenellaceae incertae sedis;g__Candidatus Coprenecus;s__Candidatus Coprenecus avistercoris


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Tidjanibacter faecipullorum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Henan Agricultural University


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Amycolatopsis sp. NPDC088138

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Japan: Tokyo

ncbi_isolation_source: soil

ncbi_organism_name: Azospirillum sp. TSH64

ncbi_submitter: University of Minnesota


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Mycobacterium marinum MB2

ncbi_submitter: Gyeongsang National University


ncbi_organism_name: Thermodesulfovibrionales bacterium


ncbi_assembly_name: Rumen uncultured genome RUG13050

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Eubacterium callanderi

ncbi_submitter: University of Chicago


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Pakistan: Balochistan

ncbi_isolation_source: infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_country: USA: CO

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: addis ababa university


ncbi_isolation_source: upper respiratory tract

ncbi_organism_name: Actinobacillus indolicus

ncbi_submitter: WTSI


ncbi_country: Italy

ncbi_isolation_source: Stool 2

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_organism_name: Schaalia georgiae DSM 6843

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Candidatus Onthomorpha sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Onthomorpha;x__unclassified Candidatus Onthomorpha;s__Candidatus Onthomorpha sp.


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Streptomyces avermitilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Comamonadaceae bacterium UBA7039

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Ocean

ncbi_organism_name: Prochlorococcus marinus str. MIT 9311

ncbi_submitter: MIT

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Synechococcales;f__Prochlorococcaceae;g__Prochlorococcus;s__Prochlorococcus marinus;x__Prochlorococcus marinus str. MIT 9311


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sedimenticola sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Penn State


ncbi_country: China: Nanning

ncbi_isolation_source: Sputum; Late isolate from VAP patient 3

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Nanyang Technological University


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Gemmiger formicilis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Australia: Magnetic Island; QLD


ncbi_country: China

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Nostoc sp. DcaGUA01

ncbi_submitter: LANGEBIO


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Pleurocapsa sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_submitter: UNIVERSITY HOSPITAL TUEBINGEN


ncbi_assembly_name: IMG-taxon 2675902963 annotated assembly

ncbi_organism_name: Sediminibacillus albus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Germany: Berlin

ncbi_isolation_source: mold-colonized wall of an indoor environment

ncbi_organism_name: Prauserella muralis

ncbi_submitter: Bielefeld University


ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Toho University


ncbi_isolation_source: burned soil

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Germany

ncbi_organism_name: Borreliella bavariensis

ncbi_strain_identifiers: PZwi

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_country: USA

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Chile: Santiago

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad de Chile


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Allosphingosinicella sp.

ncbi_submitter: Zhejiang University


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: Dahi fermented milk product

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Quaid-I-Azam University


ncbi_organism_name: Paenibacillus thiaminolyticus


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-0042

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Mariprofundaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: uncultured Rickettsia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Thalassospira lucentensis

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Clostridium thailandense

ncbi_submitter: The University of Queensland


ncbi_organism_name: uncultured Nocardioidaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_strain_identifiers: CGMCC 31459

ncbi_submitter: Qilu University of Technology, Shandong Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: uncultured Calditrichaceae bacterium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Ornithinimicrobium sp. W1665

ncbi_submitter: Shanxi Medical University


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: University of Amsterdam


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: University of Parma


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Thermoleophilaceae bacterium


ncbi_organism_name: Methylomonas sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Paeniglutamicibacter sp. R2-26

ncbi_submitter: china agricultural university


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: [Lactobacillus] rogosae


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bradyrhizobium sp. BR 1432

ncbi_submitter: Embrapa


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Frankiales bacterium

ncbi_submitter: Colorado State University


ncbi_country: Norway

ncbi_isolation_source: environmental

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Hydrogenovibrio sp.


ncbi_organism_name: Paratractidigestivibacter faecalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Pseudolabrys sp.


ncbi_organism_name: Tenacibaculum sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI


ncbi_assembly_name: freshwater MAG --- LaPlata-1m-a_bin-308

ncbi_submitter: BILS


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-5555


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: Anaerotignum faecicola


ncbi_isolation_source: metagenome

ncbi_organism_name: Candidatus Howiella intestinavium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Howiella;s__Candidatus Howiella intestinavium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Howiella;s__Candidatus Howiella intestinavium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: bacterium 1xD42-87

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chile: Tarapaca Salar de Huasco

ncbi_isolation_source: shallow sediments of the Salar de Huasco lagoon

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Universidad Andres Bello

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Madison; WI

ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus sp. E194

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: Argentina

ncbi_isolation_source: intestinal tract

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: UNESP-FCAV


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Seawater

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Microbacterium sp. Leaf179

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Mucispirillum schaedleri


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R300;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Brazil: Belo Horizonte;Pampulha lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M34BS1

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Paraglaciecola sp. Hal342

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Muriicola sp. SD30

ncbi_submitter: zhejiang sci-tech university


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- Loclat_bin-03441

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_organism_name: Micromonospora chalcea

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Tanzania

ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_isolation_source: human gut

ncbi_organism_name: Phocaeicola coprophilus

ncbi_submitter: EMG


ncbi_country: China: Yan an

ncbi_organism_name: Pseudomonas sp. BT-42-2

ncbi_submitter: Yan'an University


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Melbourne


ncbi_organism_name: Mesotoga prima

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: blood

ncbi_submitter: The Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin;x__Salmonella enterica subsp. enterica serovar Dublin str. DG22


ncbi_country: China: Guizhou; Longli

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Texas

ncbi_organism_name: Pseudomonas rhodesiae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Zhejiang; Hangzhou


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_submitter: Kiel University


ncbi_country: USA: Houston

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_organism_name: uncultured Enorma sp.


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Gothenburg


ncbi_assembly_name: Rumen uncultured genome RUG660

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Streptomyces sp. NPDC005236

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: freshwater

ncbi_organism_name: Shigella sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_country: Pakistan

ncbi_isolation_source: gut

ncbi_organism_name: Leuconostoc fallax

ncbi_submitter: NIBGE


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: porcine tonsil microbiota

ncbi_organism_name: Rothia nasisuis

ncbi_submitter: Wageningen University and Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: no molasses with increasing thiocyanate

ncbi_organism_name: Micrococcales bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_country: Chile: Valparaiso

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: P Universidad Catolica de Valparaiso


ncbi_country: India: Vellore

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: Mauritius: Palmar

ncbi_isolation_source: gills

ncbi_organism_name: Candidatus Thiodiazotropha taylori

ncbi_submitter: University of California, Davis


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Anaerotruncus rubiinfantis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Phocaeicola massiliensis


ncbi_organism_name: Tardiphaga sp.

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: Wound

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_country: USA: Glendale; AZ

ncbi_isolation_source: fruit fly in a laboratory

ncbi_organism_name: Acetobacter sicerae

ncbi_submitter: Brigham Young University


ncbi_country: USA:New York;Manhattan

ncbi_isolation_source: Xenic protist cell culture

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: American Museum of Natural History


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Key laboratory of dairy biotechnology and engineering


ncbi_isolation_source: placenta

ncbi_organism_name: Brucella abortus 104M

ncbi_submitter: Beijing Institute of Biotechnology


ncbi_organism_name: Aquimarina sp. 2-A2

ncbi_submitter: Shandong University


ncbi_isolation_source: Swine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: Brazil:Sao Paulo; Santos

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Zurich


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: USA: Hopland; California

ncbi_isolation_source: 0.2 micron size-filtered soil effluent from rhizosphere-associated grassland soil

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: EMG


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Altavista; VA

ncbi_isolation_source: PCB contaminated wastewater treatment lagoon sediment microcosms

ncbi_organism_name: bacterium

ncbi_submitter: University of Iowa


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: Clostridium fessum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Candidatus Avimuribaculum pullicola

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Avimuribaculum;s__Candidatus Avimuribaculum pullicola


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG204

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: India: Sub Hialayan Terai region

ncbi_isolation_source: Gut content

ncbi_organism_name: Mycobacterium sp. EPG1

ncbi_submitter: University of North Bengal


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang university


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Corynebacterium amycolatum

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Japan: Okami (NIHJ)

ncbi_organism_name: Streptomyces sp. NRRL B-1677

ncbi_strain_identifiers: NRRL B-1677

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Mexico

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of California at Davis


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Streptococcus sp. UBA4235


ncbi_organism_name: Pseudomonas sp. URMO17WK12:I2

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: TX

ncbi_isolation_source: feces (Sus scrofa)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Puniceicoccaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Dialister invisus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Turicibacter sanguinis


ncbi_isolation_source: marine water

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: Nashville; Tennessee

ncbi_isolation_source: Healthy infant urine

ncbi_organism_name: Actinotignum sanguinis

ncbi_submitter: Vanderbilt University Medical Center


ncbi_country: United Kingdom

ncbi_isolation_source: Submandibular lymph node abscess

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: United Kingdom: Sussex

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: Enterobacter roggenkampii


ncbi_country: USA: CA

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Blood culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Ruijin Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_country: Germany

ncbi_isolation_source: milk

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: RNA Bioinformatics and High-Throughput Analysis Friedrich Schiller University Jena


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: India

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 8303

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: Christensenellales bacterium


ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_country: Hong Kong: Telegraph Bay

ncbi_isolation_source: Stormwater drain

ncbi_organism_name: Pseudomonas sp. PSKL.D1

ncbi_submitter: The Independent Schools Foundation Academy


gtdb_type_species_of_genus: t

ncbi_organism_name: Hydrocarboniphaga effusa AP103

ncbi_submitter: Biology Centre CAS


ncbi_strain_identifiers: 459;Klebsiella pneumoniae 459

ncbi_submitter: Beijing Institute of Genomics, Chinese Academy of Sciences


ncbi_country: Sweden: Malmo

ncbi_isolation_source: Dental biofilm

ncbi_organism_name: Streptococcus gordonii

ncbi_strain_identifiers: CW

ncbi_submitter: Malmo University


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA: IA

ncbi_isolation_source: root

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_country: Iceland

ncbi_isolation_source: Cave wall

ncbi_organism_name: Pseudomonas proteolytica

ncbi_submitter: University of Akureyri


ncbi_country: Norway

ncbi_isolation_source: Blood

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_country: Australia: near Lamington National Park; Queensland

ncbi_isolation_source: termite gut

ncbi_organism_name: Tannerella sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: India: Srinagar; Jammu Kashmir

ncbi_isolation_source: India

ncbi_organism_name: Pseudomonas sp. CK-NBRI-02

ncbi_submitter: Jawaharlal Nehru University


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands: Utrecht

ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Utrecht University


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F88387

ncbi_submitter: Broad Institute


ncbi_organism_name: Acidovorax sp. JHL-9

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Fujian

ncbi_isolation_source: wound

ncbi_organism_name: Nocardia terpenica

ncbi_submitter: Chinese PLA Center for Disease Control and Prevention


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Brachybacterium halotolerans subsp. kimchii

ncbi_submitter: World Institute of Kimchi


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thiomicrorhabdus sp.

ncbi_submitter: Portland State University


ncbi_assembly_name: freshwater MAG --- MJ130820A_bin-250

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: USA: MD

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: DMB SH20031

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Denmark: South Greenland; Kap Hegh

ncbi_isolate: KAP bin117

ncbi_isolation_source: soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_strain_identifiers: KAP bin117

ncbi_submitter: Monash University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Psychrobacter raelei

ncbi_submitter: Collage of Public Health, Imam Abdulrahman Bin Faisal University (IAU University)


ncbi_organism_name: Methylophaga thiooxydans


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptomyces sp. NPDC059445

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Micromonospora chalcea


ncbi_organism_name: Amycolatopsis sp. cmx-5-3

ncbi_submitter: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Lichenihabitans sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human gut

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Iowa State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Hawaii Graf Lab


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Providencia sp. PROV200

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Alloprevotella sp.


ncbi_organism_name: Nonomuraea sp. NPDC050394


ncbi_organism_name: Candidatus Rhabdochlamydia sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Parachlamydiales;f__Candidatus Rhabdochlamydiaceae;g__Candidatus Rhabdochlamydia;x__unclassified Candidatus Rhabdochlamydia;s__Candidatus Rhabdochlamydia sp.


ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: Washington State University


ncbi_organism_name: Candidatus Egerieisoma sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;x__Clostridiaceae incertae sedis;g__Candidatus Egerieisoma;x__unclassified Candidatus Egerieisoma;s__Candidatus Egerieisoma sp.


ncbi_organism_name: Stenotrophomonas muris

ncbi_submitter: Bielefeld University


ncbi_organism_name: Hominenteromicrobium sp.


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: China: Inner Mongolia Autonomous Region

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Oceanobacillus bengalensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Streptomyces anthocyanicus


ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Shewanella mangrovisoli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 6 / F; 5m depth; 0.2 filter

ncbi_organism_name: Planctomycetes bacterium GWF2_42_9

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__unclassified Planctomycetota;s__Planctomycetes bacterium GWF2_42_9


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_country: Italy

ncbi_organism_name: Bifidobacterium samirii

ncbi_submitter: University of Parma


ncbi_country: China: Sichuan

ncbi_isolation_source: feces from chicken farm

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sichuan University


ncbi_country: USA: DC

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: US Food and Drug Administration


ncbi_country: Chile: De Los Lagos Region

ncbi_isolation_source: Isolated from blood of a 79 years old male

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Roseburia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Pittsburgh

ncbi_submitter: University of Pittsburgh


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Viet Nam: Ho Chi Minh City

ncbi_isolation_source: urethral exudate

ncbi_strain_identifiers: PIHCM 20149

ncbi_submitter: Pasteur Institute of Ho Chi Minh City


ncbi_country: China: Beijing

ncbi_submitter: General Hospital


ncbi_country: Australia

ncbi_isolation_source: beef

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_country: Brazil: Recife

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Aggeu Magalhaes - FIOCRUZ - Brazil


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: Japan: Tokyo

ncbi_isolation_source: blood

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: China

ncbi_organism_name: Corynebacterium afermentans subsp. lipophilum

ncbi_submitter: China CDC


ncbi_submitter: Chinese PLA General Hospital


ncbi_assembly_name: MMC-GTS-glpFKO

ncbi_isolate: synthetic

ncbi_organism_name: Mycoplasma mycoides subsp. capri

ncbi_submitter: SIB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma mycoides;sb__Mycoplasma mycoides subsp. capri


ncbi_country: Canada: Ontario

ncbi_isolation_source: dairy milk

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: McGill University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_country: China: The East China Sea

ncbi_isolation_source: Natural near bottom seawater

ncbi_organism_name: Halomonas litopenaei

ncbi_submitter: Ocean University of China


ncbi_country: India

ncbi_isolation_source: soil

ncbi_organism_name: Achromobacter insolitus

ncbi_submitter: Jaypee Institute of Information Technology


ncbi_country: Russia: Kazan

ncbi_isolation_source: feces

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Kazan Federal University


ncbi_country: USA

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Norway

ncbi_isolation_source: teat

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SC


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: Shewanella frigidimarina

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: France

ncbi_isolation_source: Minced meat

ncbi_submitter: Anses


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: fetus

ncbi_organism_name: Helicobacter bilis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Microbacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Streptococcus suis

ncbi_strain_identifiers: Transconjugant cDY107

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Pennsylvania State University


ncbi_country: Hong Kong

ncbi_isolation_source: Shek Wu Hui WWTPs_110 WWTPs influent

ncbi_organism_name: Shigella flexneri

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Portugal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Acutalibacter muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: metabat2_coassembly_bwa.743 MAG

ncbi_organism_name: Coprobacter fastidiosus

ncbi_strain_identifiers: metabat2_coassembly_bwa.743 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Xanthobacteraceae bacterium


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S26

ncbi_submitter: University of Calgary


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pretoria


ncbi_country: Poland

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: China: Fujian; Longyan; Zijin gold and copper mine

ncbi_organism_name: Stenotrophomonas acidaminiphila

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Utah


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_country: Russia:Cape Chukochii; East Siberian Sea

ncbi_isolation_source: permafrost sediment

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: Princeton University


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Tissierellia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__environmental samples;s__uncultured Tissierellia bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Trinity College Dublin


ncbi_isolation_source: well water

ncbi_organism_name: Clostridium botulinum CFSAN001628

ncbi_submitter: FDA


ncbi_organism_name: Cyanobacteria bacterium P01_F01_bin.143

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium P01_F01_bin.143


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: India: Gullenahalli; Hassan district; Karnataka

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_isolation_source: wastewater

ncbi_organism_name: Mitsuokella multacida

ncbi_submitter: University of Queensland


ncbi_country: USA: Plum Island; MA

ncbi_isolation_source: Filtered seawater (5uM filter)

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_country: Mexico: Navolato; Sinaloa

ncbi_isolation_source: Culiacan River; Iraguato

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pomona


ncbi_organism_name: uncultured bacterium


ncbi_country: Ghana: Accra

ncbi_isolation_source: Livestock farm

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: North Carolina

ncbi_isolation_source: clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Inha University


ncbi_country: Canada: Toronto

ncbi_organism_name: Dehalococcoides mccartyi

ncbi_submitter: University of Toronto


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: School of Allied Health Sciences


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Staskawiczbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Staskawicziibacteriota;x__unclassified Candidatus Staskawiczbacteria;s__Candidatus Staskawiczbacteria bacterium


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: hospital

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: uncultured Neisseria sp.


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Salinimicrobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: Washington University in Saint Louis


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Laboratory

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Shanghai

ncbi_isolation_source: gut

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Pelagicoccus sp.

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: Single cell amplified by MDA; raw seawater

ncbi_organism_name: Prochlorococcus sp. HOT208_60m_813O14

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_submitter: Universidad Nacional Mayor de San Marcos


ncbi_country: USA: New York State

ncbi_organism_name: Dickeya dianthicola

ncbi_submitter: Cornell University


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Prevotellaceae bacterium UBA4301

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Nottingham


ncbi_country: USA: FL; Apalachicola Bay

ncbi_isolation_source: water column

ncbi_organism_name: Pseudomonas aeruginosa WC55

ncbi_submitter: University of Illinois at Chicago


ncbi_country: South Korea:East Sea

ncbi_organism_name: Marinobacterium profundum

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SRCAMB


ncbi_country: USA: Danvile; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_assembly_name: Peptoclostridium difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Mexico: Cuatro Cienegas

ncbi_organism_name: Bacillus sp. m3-13

ncbi_submitter: Cinvestav del IPN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. m3-13


ncbi_country: USA: Saint Louis; MO

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St. Louis


ncbi_isolation_source: environmental swab

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 639672-50


ncbi_country: Mali

ncbi_organism_name: Xanthomonas oryzae pv. oryzicola

ncbi_submitter: Bogdanove Lab, Plant Pathology and Plant-Microbe Biology, Cornell University


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_country: USA: Tennessee

ncbi_isolation_source: blood

ncbi_organism_name: Haematospirillum jordaniae

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: wound infection

ncbi_submitter: University of Zurich


ncbi_organism_name: Prochlorococcus marinus str. MIT 9301

ncbi_submitter: Gordon and Betty Moore Foundation Marine Microbiology Initiative

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Synechococcales;f__Prochlorococcaceae;g__Prochlorococcus;s__Prochlorococcus marinus;x__Prochlorococcus marinus str. MIT 9301


ncbi_country: Brazil

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Australia: Melbourne

ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: Monash University


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; Guaymas Basin; Black smoker hydrothermal vent

ncbi_isolation_source: marine hydrothermal chimney wall TVG10

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_country: Austria

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: University of Tartu


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: WTSI


ncbi_country: USA: Tucson; AZ

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Arizona


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Enterococcus sp. AZ142

ncbi_submitter: Broad Institute