ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Institut Pasteur of Madagascar


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: cold seep

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


gtdb_representative: f

ncbi_organism_name: Acinetobacter variabilis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_isolation_source: Mariane sediment

ncbi_submitter: marine college, shandong university


ncbi_assembly_level: Scaffold

ncbi_country: Australia

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SC


ncbi_country: Brazil

ncbi_isolation_source: pig liver from slaughterhouse

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Microbacterium sp. UNC423CL45Tsu

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Egypt: Alexandria

ncbi_isolation_source: Endotracheal tube

ncbi_strain_identifiers: LBMM 6384

ncbi_submitter: University of the Basque Country


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Dokdonia sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella sp. C1982

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Curtobacterium sp. CFBP9011

ncbi_submitter: INRAE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Dialister invisus

ncbi_submitter: EMG


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Nesterenkonia aurantiaca

ncbi_refseq_category: reference genome

ncbi_type_material_designation: assembly from type material


gtdb_type_species_of_genus: t

ncbi_country: Portugal: Minho estuary; Caminha

ncbi_isolation_source: mesotidal zone; benthic

ncbi_organism_name: Vasconcelosia minhoensis LEGE 07310

ncbi_submitter: CIIMAR


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Hebei Province

ncbi_isolation_source: stool

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: He Bei university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Exiguobacterium oxidotolerans

ncbi_submitter: Tang lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium oxidotolerans


ncbi_assembly_level: Complete Genome

ncbi_country: Canada: Luskville; Quebec

ncbi_organism_name: Bradyrhizobium sp. 6(2017)

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Finland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Candidatus Angelobacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;g__Candidatus Angelobacter;x__unclassified Candidatus Angelobacter;s__Candidatus Angelobacter sp.


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: aquatic

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: chicken caecal content


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: Russia: Perm region

ncbi_isolation_source: underground water; oilfield outline zone

ncbi_organism_name: Rhodococcus ruber

ncbi_strain_identifiers: IEGM 333

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sciensano


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Ilumatobacter sp.

ncbi_submitter: Zhejiang University


ncbi_assembly_name: freshwater MAG --- Ja2-D4_bin-0822

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: USA

ncbi_submitter: Broad Institute


ncbi_country: Chile: Valdivia

ncbi_isolation_source: Wild bird feces

ncbi_organism_name: Campylobacter ornithocola

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Pectobacterium parmentieri

ncbi_submitter: University of Helsinki


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Enterococcus entomosocium

ncbi_submitter: Icahn School of Medicine


ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sludge

ncbi_organism_name: Cupriavidus necator H16

ncbi_submitter: University of Nottingham


ncbi_isolation_source: Hospital surface

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_assembly_name: HelPylUM007 1.0

ncbi_country: Malaysia

ncbi_organism_name: Helicobacter pylori UM007

ncbi_submitter: University of Hyderabad


ncbi_isolation_source: Faeces


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_country: Australia

ncbi_isolation_source: feces

ncbi_submitter: Curtin University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: uncultured bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolate: Streptococcus species

ncbi_isolation_source: Human

ncbi_organism_name: bacterium

ncbi_strain_identifiers: Streptococcus species

ncbi_submitter: UNIVERSITY COLLEGE LONDON


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Thermotogae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;x__environmental samples;s__uncultured Thermotogae bacterium


ncbi_organism_name: Adlercreutzia equolifaciens


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Enterobacter quasiroggenkampii

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Nonomuraea sp. bgisy101

ncbi_submitter: BGI Research


ncbi_organism_name: Streptomyces coelicoflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella michiganensis


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Aidingimonas halophila

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Stutzerimonas chloritidismutans

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Hominicoprocola fusiformis

ncbi_submitter: Microba


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Micromonospora sp. NPDC047740


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Complutense de Madrid


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Salmonella sp. CQ22WZ0164SAL

ncbi_submitter: Wanzhou CDC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Brazil: Belem

ncbi_submitter: LNCC


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: uncultured Elstera sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Istanbul University


ncbi_organism_name: Actinomadura geliboluensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp. NPDC014728


ncbi_organism_name: Enterococcus sp. DIV0703

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillus cereus group sp. BceL077

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL077


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: BGI


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: I.N.Blokhina Research Institute of Epidemiology and Microbiology


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_isolation_source: Pooled sheep faecal samples collected from floor of farm

ncbi_organism_name: Enterobacter sp. RHB15-C17

ncbi_submitter: The REHAB Consortium


ncbi_country: Russia

ncbi_isolation_source: Tomsk

ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: Rostov-on-Don Antiplague Institute


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: Inner Mongolia Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Anhui; Maanshan

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cellvibrionales bacterium

ncbi_submitter: EMG


ncbi_country: Brazil:Sao Paulo; Santos

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Japan: Fukushima

ncbi_isolation_source: physical

ncbi_organism_name: Chromobacterium haemolyticum

ncbi_submitter: School of Pharmacy, Kitasato University


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Pseudosulfitobacter pseudonitzschiae

ncbi_submitter: Shantou University


ncbi_country: Canada: Sooke River

ncbi_isolation_source: pinacoderm; endoderm; and surrounding water

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: University of Alberta


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Axillary-groin swab

ncbi_organism_name: Kocuria rhizophila


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Brevibacterium epidermidis NBRC 14811

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Fervidobacterium sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Chthoniobacteraceae bacterium


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: University of Iowa


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Tecnologico de Monterrey


ncbi_isolation_source: tissue

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Rosselkhoznadzor The Russian State Center for Animal Feed and Drug Standardization and Quality


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Kangwon National University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Paenibacillus hunanensis

ncbi_submitter: Shandong Agricultural University


ncbi_submitter: State Key Laboratory of Microbial Metabolism, Shanghai Jiaotong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Kitasatosporales;f__Streptomycetaceae;g__Streptomyces;x__Streptomyces violaceusniger group;s__Streptomyces hygroscopicus;sb__Streptomyces hygroscopicus subsp. jinggangensis;x__Streptomyces hygroscopicus subsp. jinggangensis 5008


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas asiatica

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: USA: VA

ncbi_isolation_source: water gallon

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: France

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Malaysia: Tioman Island; Pahang

ncbi_isolation_source: marine sediment

ncbi_organism_name: Blastococcus sp. MG754426

ncbi_submitter: University of Malaya


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_country: Ghana: Korle Bu

ncbi_isolation_source: nose

ncbi_submitter: Noguchi Memorial Institute for Medical Research, University of Ghana


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Helicobacter rodentium


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Oribacterium sp.


ncbi_country: China: Qinghai

ncbi_isolation_source: intestinal contents

ncbi_organism_name: Arthrobacter sp. zg-Y1116

ncbi_submitter: Chinese Center For Disease Control And Prevention


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Seattle

ncbi_isolation_source: Tissue left glenoid

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_country: Israel

ncbi_isolation_source: water

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Broad Institute


ncbi_country: Italy: Vicenza

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium paraense

ncbi_submitter: University of Trento


ncbi_country: Czech Republic

ncbi_isolation_source: Lettuce

ncbi_organism_name: Cronobacter turicensis

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: South Carolina

ncbi_isolation_source: soil

ncbi_organism_name: Bradyrhizobium sp. SRS-191

ncbi_submitter: Florida A&M University


ncbi_country: Italy

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bologna


ncbi_country: Germany: Mannheim

ncbi_isolation_source: rectal swab

ncbi_submitter: Heidelberg University Hospital


ncbi_country: China

ncbi_isolation_source: urine

ncbi_submitter: Yangzhou University


ncbi_country: USA

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: CDC Prevention Epicenter Program


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Pseudosulfitobacter pseudonitzschiae

ncbi_submitter: Shantou University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Kansas State University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Ochrobactrum sp. UBA7634

ncbi_submitter: University of Queensland


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: uncultured Fluviicola sp.

ncbi_submitter: EMG


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Michigan

ncbi_organism_name: Enterococcus faecium EnGen0188

ncbi_submitter: Broad Institute


ncbi_country: USA: University of Alabama at Birmingham

ncbi_isolation_source: male urethra during a study of non-gonococcal urethritis

ncbi_organism_name: Ureaplasma urealyticum 2033

ncbi_submitter: The J. Craig Venter Institute


ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Streptococcus canis

ncbi_submitter: FU berlin


ncbi_country: Netherlands

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: University of Groningen


ncbi_country: China: Hunan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Blautia sp. HA2174

ncbi_submitter: Shandong University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Stenotrophomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Jena

ncbi_isolation_source: Incubator

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Jena University Hospital


ncbi_organism_name: Gluconobacter albidus NBRC 3250

ncbi_strain_identifiers: NBRC 3250

ncbi_submitter: Tokyo University of Agriculture


ncbi_organism_name: Pedosphaera sp.

ncbi_submitter: Xiamen University


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_country: Brazil: Rio de Janeiro

ncbi_submitter: Universidade do Estado do Rio de Janeiro


ncbi_organism_name: Streptomyces canus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Alberta

ncbi_isolation_source: beef carcass

ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_submitter: SCOPE


ncbi_assembly_level: Chromosome

ncbi_country: Canada: Edmonton

ncbi_isolation_source: rectum

ncbi_organism_name: Ligilactobacillus agilis

ncbi_submitter: University of Alberta


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Streptococcus suis YS7

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Parma


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_organism_name: Sneathiella sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Bacillus paranthracis

ncbi_strain_identifiers: TIAC 181

ncbi_submitter: Ghent University


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Australia

ncbi_isolation_source: abdomen

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium


ncbi_isolation_source: metal/plastic

ncbi_organism_name: bacterium UBA4392

ncbi_submitter: University of Queensland


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Bacteroidales bacterium UBA1745

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1745


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Pennsylvania State University


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Imperial College London


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: National Cancer Institute - NIH


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-8470

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: soft tissue

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: university of cambridge


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides clarus

ncbi_submitter: BGI


ncbi_country: Denmark

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Aerococcus christensenii

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Escherichia coli

ncbi_submitter: APC Microbiome Ireland


ncbi_isolation_source: human stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Japan:Kanagawa; Shonan Coast

ncbi_isolation_source: seawater

ncbi_organism_name: Hydrogenovibrio marinus

ncbi_submitter: Laboratory of Applied Microbiology, Department of Biotechnology, The University of Tokyo


ncbi_country: Brazil: Benjamin Constant; AM

ncbi_isolation_source: tree

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Universidade Federal Rural de Pernambuco


ncbi_organism_name: Rohdeia mirabilis

ncbi_submitter: Radboud Universiteit Nijmegen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__Planctomycetia incertae sedis;g__Rohdeia;s__Rohdeia mirabilis


ncbi_isolation_source: wastewater

ncbi_organism_name: Metapseudomonas otitidis

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Prochlorococcus marinus

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_assembly_name: UPH_Bifidobacterium breve_BS2-PS1

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Universitas Pelita Harapan, Faculty of Science and Technology


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Nanjing University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: Faeces

ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_country: Slovenia

ncbi_isolation_source: vinegar production

ncbi_organism_name: Novacetimonas pomaceti

ncbi_submitter: Faculty of Natural Sciences and Mathematics


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Sweden: coastal region near Tjarno

ncbi_isolation_source: Seawater (1m depth)

ncbi_organism_name: Reinekea forsetii

ncbi_submitter: University Duisburg-Essen


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: Washington University in Saint Louis


ncbi_country: China: Dajiu Lake

ncbi_isolation_source: sediments

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Pseudorhodobacter sp.

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_country: South Africa

ncbi_isolation_source: Fresh Produce

ncbi_strain_identifiers: UPMP 1548

ncbi_submitter: University of Pretoria


ncbi_country: Singapore: Singapre

ncbi_organism_name: Shigella flexneri

ncbi_strain_identifiers: A

ncbi_submitter: Genome Institute of Singapore


ncbi_country: Gambia

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: USA: MN

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Enterobacter intestinihominis

ncbi_submitter: Institut Pasteur


ncbi_country: Estonia: Tartumaa; Tartu vald

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Ilumatobacter sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Carnobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Anaeromassilibacillus sp.


ncbi_country: Italy: Trento

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Gordonia terrae

ncbi_strain_identifiers: K

ncbi_submitter: University of Trento


ncbi_organism_name: Simkania sp.


ncbi_country: Peru

ncbi_isolation_source: kidney; liver

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Instituto Tecnologico de la Produccion


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Spain

ncbi_isolation_source: gut

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: University Hospital Reina Sofia


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-0531

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D4_bin-1194

ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: uncultured Microthrixaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: France

ncbi_isolation_source: BAL

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_organism_name: Escherichia coli

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus GGMC6036

ncbi_submitter: Broad Institute


ncbi_country: USA: California; Eel River; South Fork Eel River near Leggett

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Runella slithyformis


ncbi_country: Israel: Lake Kinneret

ncbi_isolation_source: Cylindrospermopsis summer bloom

ncbi_organism_name: Cylindrospermopsis raciborskii KLL07

ncbi_submitter: University of Haifa


ncbi_organism_name: Staphylococcus pettenkoferi

ncbi_submitter: INSERM U1047


ncbi_country: Russia: Altay region; Tanatar III lake

ncbi_isolation_source: Water collecting ditch

ncbi_organism_name: Halanaerobium polyolivorans

ncbi_submitter: SciBear OU


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Staskawicziibacteriota;s__Candidatus Staskawiczbacteria bacterium RIFOXYA1_FULL_37_15


ncbi_assembly_name: Rumen uncultured genome RUG14561

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: National Cancer Institute - NIH


ncbi_country: USA: Washington

ncbi_isolation_source: parent strain CSF 259-93 passaged with rifampicin

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_strain_identifiers: CR

ncbi_submitter: Washington State University


ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;s__Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_12_FULL_47_25


ncbi_country: Japan: Ryukyu Archipelago; north part of Okinawa main island; Yambaru area

ncbi_isolation_source: soil

ncbi_organism_name: Shinella yambaruensis

ncbi_submitter: Institute of Medicinal Biotechnology Chinese Academy of Medical Sciences


ncbi_organism_name: [Ruminococcus] torques


ncbi_organism_name: Agrobacterium sp. 22094

ncbi_submitter: Yantai University


ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: China: Jiuan Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_organism_name: Paracoccaceae bacterium


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Eshraghiella crossota


ncbi_organism_name: Orbaceae bacterium ac157xtp

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Flavobacterium sp. DSP2-3-1

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: Rumen uncultured genome RUG039

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Leptolinea sp.


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: IFSC USP


ncbi_organism_name: Streptomyces sp. NPDC057131

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human gut


ncbi_assembly_name: freshwater MAG --- Loclat_bin-14005

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Morocco

ncbi_organism_name: Clostridiisalibacter paucivorans DSM 22131

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Faucicola osloensis

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI-Shenzhen


ncbi_isolate: Klebsiella pneumoniae

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: Klebsiella pneumoniae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Center for Microbial Communities


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Australia: Melbourne

ncbi_isolation_source: seeds

ncbi_organism_name: Pseudomonas sp. GM_Psu_2

ncbi_submitter: Agriculture Victoria


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: Germany

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: Epilithonimonas hominis


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: KS

ncbi_isolation_source: environment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_assembly_name: freshwater MAG --- Loc090907-8m_bin-217

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;x__environmental samples;s__uncultured Candidatus Berkelbacteria bacterium


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Stenotrophomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Anhui; Wuhu

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Denmark: Hellerup

ncbi_isolation_source: Coastal water

ncbi_organism_name: Vibrio sp. S17_S38

ncbi_submitter: DTU


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: China: Xinjiang

ncbi_isolation_source: Tailan River silt

ncbi_organism_name: Streptomyces sp. TRM68367

ncbi_submitter: Tarim University


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of Calgary


ncbi_assembly_name: freshwater MAG --- A14_bin-2382

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Chlorobiaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Yersinia enterocolitica subsp. enterocolitica

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Corallococcus coralloides

ncbi_submitter: Hoseo University


ncbi_organism_name: Gemmatimonadota bacterium


ncbi_country: USA

ncbi_isolation_source: Invasive

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium ADurb.Bin305


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Sweden

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Streptomyces sp. NPDC007083

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Caldisericia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Wenzhou

ncbi_isolation_source: contaminated soil

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Xinjiao Dong


ncbi_country: USA: Kansas

ncbi_isolation_source: feedlot

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA-ARS-USMARC


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: University of Utah


ncbi_assembly_name: Rumen uncultured genome RUG11944

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Pseudomonas sp. MYb327

ncbi_submitter: University of Toronto


ncbi_isolation_source: throat

ncbi_organism_name: Neisseria sp. HMSC070H10

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Streptomyces globisporus


ncbi_organism_name: Collinsella vaginalis

ncbi_submitter: URMITE


ncbi_country: Antarctica: Anchorage Island

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas versuta

ncbi_submitter: University of Malaya


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Lactobacillus iners LactinV 01V1-a

ncbi_strain_identifiers: LactinV 01V1-a

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Mycobacterium marinum E11

ncbi_submitter: KAUST


ncbi_country: China: Hong Kong SAR

ncbi_isolation_source: seawater

ncbi_organism_name: Rhodobacterales bacterium HKCCA1283

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: cattle waste-corn fermentations

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus amylovorus;sb__Lactobacillus amylovorus subsp. animalium;x__Lactobacillus amylovorus subsp. animalium DSM 16698

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_assembly_name: IMG-taxon 2599185323 annotated assembly

ncbi_organism_name: Pseudomonas sp. NFACC37-1

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Enterocloster sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: human gut

ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: Australia: SA

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_country: Canada: Rouyn-Noranda

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Spain: Asturias

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_country: Denmark

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Odense University Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Indiana; Moores Creek IURTP

ncbi_isolation_source: nematodes

ncbi_organism_name: Xenorhabdus bovienii

ncbi_strain_identifiers: texanum MC_250

ncbi_submitter: Xenorhabdus project-Indiana University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: feces

ncbi_organism_name: Coprobacillus sp. TF10-10

ncbi_submitter: BGI


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Peptoniphilus lacydonensis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Russia: Moscow

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: I.N. Blochina NNSRIEM


ncbi_country: USA

ncbi_isolation_source: pepper

ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: Universidade de Sao Paulo


ncbi_country: China: East China Sea

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INSERM U1070


ncbi_country: China: Shenzhen

ncbi_organism_name: Phocaeicola vulgatus


ncbi_country: China

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: Lacibacter sediminis

ncbi_submitter: Nanjing Forestry University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Malaysia

ncbi_organism_name: Staphylococcus argenteus


ncbi_country: New Caledonia

ncbi_isolation_source: soil

ncbi_organism_name: Leptospira haakeii

ncbi_submitter: Institut Pasteur Montevideo


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer sampled inside a natural surface slick

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_assembly_name: Rumen uncultured genome RUG14609

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Fibrobacter succinogenes

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces fradiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Suqian City; Jiangsu Province

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Bacillus mycoides

ncbi_strain_identifiers: INRA 5

ncbi_submitter: INRA-MIG


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: IA

ncbi_isolation_source: root

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Streptomyces sp. NBC_00637

ncbi_submitter: Technical University of Denmark


ncbi_country: India

ncbi_isolation_source: Feces

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Massachusetts

ncbi_organism_name: Candidatus Babelota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;x__unclassified Candidatus Babelota;s__Candidatus Babelota bacterium


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: South Africa: Cape Recife

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Hydrococcus sp. RU_2_2

ncbi_submitter: University of Wisconsin, Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Pleurocapsales;f__Hydrococcaceae;g__Hydrococcus;x__unclassified Hydrococcus (in: cyanobacteria);s__Hydrococcus sp. RU_2_2


ncbi_genome_category: derived from single cell

ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Southampton


ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_organism_name: Bacilli bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Agromyces sp. NPDC057865

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Mexico

ncbi_isolation_source: feces


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Fidelibacterota bacterium


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay water

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Clemson University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Lysinibacillus sp. FSL K6-4013

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Lysinibacillus;x__unclassified Lysinibacillus;s__Lysinibacillus sp. FSL K6-4013


ncbi_country: France

ncbi_organism_name: Coxiella burnetii

ncbi_submitter: IHU mediterranee infection


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Manganitrophaceae bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;c__Nitrospiria;o__Candidatus Troglogloeales;f__Candidatus Manganitrophaceae;x__unclassified Candidatus Manganitrophaceae;s__Candidatus Manganitrophaceae bacterium


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Photobacterium sp. 2_MG-2023

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: USA: Wyoming

ncbi_isolation_source: Aquatic Environment

ncbi_submitter: University of Wyoming


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Ground Turkey

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangnan University


ncbi_organism_name: Bacillus paralicheniformis

ncbi_strain_identifiers: NCTC 2120

ncbi_submitter: NIZO food research


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Acutalibacter pullistercoris

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Russia: Karabetova Gora near the city of Taman

ncbi_isolation_source: sediment and water from a salsa lake of a terrestrial mud volcano

ncbi_organism_name: Vicingaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Universidad de los Andes


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Denmark: Hjorring

ncbi_isolation_source: activated sludge from Hjor_18-Q3-R7-51

ncbi_organism_name: Candidatus Competibacteraceae bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Candidatus Competibacteraceae bacterium


ncbi_organism_name: uncultured Desulfobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Peru:Ascope; Chicama; La Libertad; AA.HH.

ncbi_organism_name: Yersinia pestis PY-72

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillus proteolyticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Ghana: Korle Bu

ncbi_isolation_source: nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Noguchi Memorial Institute for Medical Research, University of Ghana


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces roseofulvus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: USA: California; Middletown

ncbi_organism_name: Candidatus Harrisonbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Harrisoniibacteriota;x__unclassified Candidatus Harrisonbacteria;s__Candidatus Harrisonbacteria bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: icddr,b


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: MD

ncbi_isolation_source: Pork Chop

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: FDA


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China

ncbi_isolation_source: marine sediment

ncbi_organism_name: Thalassorhabdomicrobium marinisediminis

ncbi_submitter: Binzhou Medical University


ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Breznakia sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Out-of-house environment

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Succinivibrio sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Cellulosimicrobium cellulans

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Nodularia sp. LEGE 04288

ncbi_submitter: Nanjing Agriculture University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nodulariaceae;g__Nodularia;x__unclassified Nodularia (in: cyanobacteria);s__Nodularia sp. LEGE 04288


ncbi_country: India: Mumbai

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Anaeroplasma sp.

ncbi_submitter: EMG


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Thiotrichaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Nocardia salmonicida

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Candidatus Fervidibacter sp.

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Fervidibacterota;g__Candidatus Fervidibacter;x__unclassified Candidatus Fervidibacter;s__Candidatus Fervidibacter sp.


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_isolation_source: surface swab

ncbi_organism_name: Agrobacterium pusense

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_country: China: Beijing

ncbi_isolation_source: wound secretion

ncbi_submitter: Chinese PLA General Hospital


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: University of South Africa


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: Freie Universitat Berlin


ncbi_organism_name: uncultured Rubrivirga sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: SponGES


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Paraprevotella clara


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Undibacterium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Escherichia coli

ncbi_submitter: United Arab Emirates University


ncbi_organism_name: Nodosilinea sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus sp. DIV0167

ncbi_submitter: Broad Institute


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Cetobacterium sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Streptomyces sp. NPDC088560

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Hydrocarboniphaga daqingensis

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Dysosmobacter sp.


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_assembly_name: freshwater MAG --- Loc080925-8-8m_bin-046

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human stool

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: DOE JGI


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: PVC group bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;x__unclassified PVC group;s__PVC group bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS TMP-3

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: SZAS TMP-3

ncbi_submitter: The University Hong Kong


ncbi_country: Peru: Oxygen minimum zone

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Kiel University


ncbi_country: China: Beijing; Lake Miyun

ncbi_isolation_source: sediments

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: SCOPE


ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Italy

ncbi_organism_name: Priestia megaterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Malaysia: Johor

ncbi_isolation_source: Sore swab

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: University of Malaya


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lymph node

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Lebanon

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University


ncbi_country: Nigeria

ncbi_isolation_source: Blood culture


ncbi_country: China: Liaoning

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: China

ncbi_isolation_source: chicken waste

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: China: Nanjing

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_organism_name: uncultured Granulicatella sp.


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: Biondi; Emanuele (Universita di Firenze)

ncbi_organism_name: Sinorhizobium meliloti BL225C

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: Kuwait

ncbi_isolation_source: crude oil contaminated deserts

ncbi_organism_name: Skermanella mucosa

ncbi_submitter: Changwon National University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: Korea Research Institute of Standards and Science


ncbi_country: France

ncbi_isolation_source: urine

ncbi_submitter: Rennes Hospital


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Lachnospiraceae bacterium UBA7780

ncbi_submitter: University of Queensland


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Anaerostipes caccae

ncbi_submitter: University of Chicago


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Africa

ncbi_isolation_source: stool

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Stellenbosch University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Russia: Moscow

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_assembly_name: IMG-taxon 2622736532 annotated assembly

ncbi_organism_name: Loktanella fryxellensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University Medical Center Groningen


ncbi_country: Brazil

ncbi_isolation_source: pasteurized commercial milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Micromonospora chersina

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_isolation_source: rumen

ncbi_organism_name: Solobacterium sp. UBA2870


ncbi_isolation_source: nasal swab

ncbi_submitter: Huazhong Agricultural University


ncbi_isolate: SPRUCE 447

ncbi_organism_name: Syntrophorhabdales bacterium

ncbi_strain_identifiers: SPRUCE 447

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Japan: Saga

ncbi_organism_name: Dickeya dadantii

ncbi_submitter: National Agriculture and Food Research Organization (NARO)


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Louisiana

ncbi_isolation_source: crab

ncbi_organism_name: Vibrio cholerae


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: University of Turin


ncbi_country: USA

ncbi_organism_name: Faecalicoccus pleomorphus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: intestine

ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: City University of Hong Kong


ncbi_country: USA: Colorado

ncbi_isolation_source: fecal swab female ferret; 4 months old

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Colorado State University


ncbi_country: Uruguay

ncbi_isolation_source: common scab lesions on potato tubers

ncbi_organism_name: Streptomyces europaeiscabiei

ncbi_submitter: Facultad de Quimica-Universidad de la Republica


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: IP


ncbi_country: USA: New York; New York City

ncbi_organism_name: Clostridium perfringens B

ncbi_submitter: University of Glasgow


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Subdoligranulum sp.

ncbi_submitter: EMG


ncbi_country: Chile: Purranque

ncbi_isolation_source: Mastitis Subclinica

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad del Desarrollo


ncbi_country: USA: CA

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli O145

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_country: Ireland

ncbi_submitter: University of Galway


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Slovenia: Ihan; pig farm

ncbi_organism_name: Prevotella pectinovora

ncbi_submitter: University of Ljubljana


ncbi_organism_name: Rothia mucilaginosa


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Helicobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Agrobacterium sp. B131/95

ncbi_submitter: Oregon State University


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Poland: Suwalki

ncbi_isolation_source: BAL

ncbi_organism_name: Streptococcus sp. 5905


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Salmonella sp. C3313

ncbi_submitter: Sichuan University


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Candidatus Humimicrobiaceae bacterium

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Candidatus Humimicrobiia;o__Candidatus Humimicrobiales;f__Candidatus Humimicrobiaceae;x__unclassified Candidatus Humimicrobiaceae;s__Candidatus Humimicrobiaceae bacterium


ncbi_country: South Korea

ncbi_isolation_source: water

ncbi_organism_name: Sphingomonas sp. SUN039

ncbi_submitter: Korea research institute of biotechnology bioscience


ncbi_organism_name: uncultured Gaiellaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Clostridium sp. AM49-4BH


ncbi_country: United Kingdom

ncbi_isolation_source: Right guttural pouch

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Canada: Quebec

ncbi_isolation_source: environmental-chicken

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20121178


ncbi_country: USA: Vidalia Region; GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile


ncbi_country: Switzerland: Geneva

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Geneva University Hospital


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_country: Austria: Kremesberg 11

ncbi_isolation_source: rumen epithelial tissue

ncbi_organism_name: Campylobacter sp. JMF_08 NE1

ncbi_strain_identifiers: JMF_08 NE1

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Chongqing

ncbi_isolation_source: nasal swab from slaughterhouse

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Vibrio chagasii

ncbi_strain_identifiers: Gal 3

ncbi_submitter: Hellenic Centre for Marine Research


ncbi_organism_name: uncultured Acidobacteriota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Corallococcus exiguus

ncbi_submitter: RASOPTA


ncbi_organism_name: Vulcanimicrobiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Clostridioides sp. ZZV14-6104

ncbi_submitter: Northern Arizona University


ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Rhodanobacter sp. Col0626

ncbi_submitter: New Zealand Forest Research Institute


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Cutibacterium acnes HL082PA2

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


ncbi_assembly_name: Rumen uncultured genome RUG11939

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Guatemala

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Intestinibacter bartlettii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Scientific Centre for Family Health and Human Reproduction Problems


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol


ncbi_country: Lithuania

ncbi_isolation_source: environmental water

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Lithuanian University of Health Sciences


ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: SAHMRI


ncbi_country: China: Nantong; Jiangsu Province

ncbi_isolation_source: feces

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Yangzhou University


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_organism_name: Duganella sp. BuS-21

ncbi_submitter: VKM/UNIQEM/IEGM


ncbi_country: Germany: Jena

ncbi_isolation_source: Incubator

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Jena University Hospital


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Macerated stomach and hepatopancreas samples from shrimp. Samples were grown in TCBS and colonies purified on TSA plates according to morphology. Isolate was cultured in TCBS.

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Computational Biology and Microbial Ecology


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_organism_name: Treponema lecithinolyticum

ncbi_submitter: EMG


ncbi_country: India: Khirganga hotspring; Himachal Pradesh; Northern Hiamayas

ncbi_isolation_source: hotspring water

ncbi_organism_name: Dechloromonas sp.

ncbi_submitter: University of Delhi


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: diffuse vent DFF1

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Saint Kitts and Nevis: Saint Kitts; Basseterre

ncbi_isolation_source: skin lesion from farm animal

ncbi_organism_name: Dermatophilus congolensis

ncbi_submitter: Ross University School of Veterinary Medicine


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Australia

ncbi_isolation_source: gut biopsy from patient with early onset Crohn s disease

ncbi_submitter: The Commonwealth Scientific and Industrial Research Organisation (CSIRO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. paratuberculosis;x__Mycobacterium avium subsp. paratuberculosis Pt139


ncbi_country: USA: DC

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: assembly Coobra isolate 12

ncbi_isolation_source: Alpha-amylase enzym 4g (Coobra)

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Sciensano


ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin swab cheek

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Aarhus University


ncbi_country: Australia: Sydney

ncbi_isolation_source: urine

ncbi_submitter: University of Technology Sydney


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Mycoplasma sp.


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Brevundimonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: USA

ncbi_isolation_source: NEUS_A leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: USA: Washington; DC

ncbi_isolation_source: tracheal mucosa

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: China: Longli Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: Sphingomonas melonis

ncbi_submitter: University of Sao Paulo - Institute of Chemistry


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: plant roots

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Krasilnikovia sp. M28-CT-15

ncbi_submitter: University of Yamanashi


ncbi_organism_name: Adlercreutzia equolifaciens subsp. celatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Azotobacter vinelandii DJ

ncbi_strain_identifiers: DJ

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: Shandong

ncbi_isolation_source: fecal sample

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: Japan:Shiga; Lake Biwa

ncbi_isolation_source: Lake freshwater

ncbi_organism_name: Nitrosomonadaceae bacterium

ncbi_submitter: Center for Ecological Research, Kyoto University


ncbi_organism_name: Streptococcus pyogenes ABC020053060

ncbi_submitter: Broad Institute


ncbi_country: USA: Madison; WI

ncbi_isolation_source: sludge collected from the acid-phase digester of a two-phase anaerobic digestion process at the Madison Metropolitan Sewerage Disctrict Nine Springs Facility

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Hangzhou

ncbi_isolation_source: Drainage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Firmicutes bacterium CAG:227

ncbi_submitter: DTU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:227


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_country: Finland

ncbi_isolation_source: meat

ncbi_organism_name: Yersinia intermedia


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a a 3.0 um filter and then through a 0.2 um filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium CG1_02_37_51


ncbi_country: USA: Wyoming

ncbi_isolation_source: Aquatic Environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_isolation_source: lung

ncbi_organism_name: Leptospira interrogans serovar Copenhageni

ncbi_submitter: University of Agriculture in Krakow


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Serratia sp. (in: enterobacteria)

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. (in: enterobacteria)


ncbi_country: China: Xuzhou

ncbi_isolation_source: sputum

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_country: Switzerland

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SC


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Chengdu; Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA: CA

ncbi_isolation_source: bovine fecal (Bos taurus)

ncbi_submitter: FDA/CFSAN