ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Bacillus swezeyi

ncbi_strain_identifiers: ES 91

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


gtdb_representative: t

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_organism_name: Senegalimassilia anaerobia

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Queensland


ncbi_assembly_name: freshwater MAG --- Umea1_bin-0711

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_assembly_level: Chromosome

ncbi_country: Italy: Marche; Ancona

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZSAM


ncbi_organism_name: Photobacterium halotolerans

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Romania: Movile Cave

ncbi_isolation_source: Lower gallery with a lake; water-sediments interface (waterfront)

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Faculty of Biology and Geology, Babes-Bolyai University of Cluj-Napoca


ncbi_organism_name: Niallia taxi

ncbi_submitter: Auburn University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_organism_name: Alistipes onderdonkii


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Spain: Alfacada pond; Ebro delta; Tarragona

ncbi_isolation_source: epidermal mucus of Anguilla anguilla fishes in Ebro delta

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_assembly_level: Complete Genome

ncbi_organism_name: gamma proteobacterium HdN1

ncbi_submitter: Max Planck Society


ncbi_country: Spain: Madrid

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_country: Singapore

ncbi_isolation_source: Gastric biopsy tissue

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National University of Singapore


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: sheep gut metagenome


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: Vagococcus carniphilus

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BGI


ncbi_isolation_source: Ileo-caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Ribeirao Preto

ncbi_isolation_source: soil

ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: AAFC


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Azoarcus sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: University of East Anglia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus agnetis

ncbi_submitter: University of Bern


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centre for Infectious Disease Research in Zambia


ncbi_country: Brazil

ncbi_isolation_source: Wound secretion

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_assembly_name: Rumen uncultured genome RUG14220

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Netherlands: Oosterschelde estury; Lokkersnol

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Uppsala University


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolate: Prospectively collected (P)

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: Prospectively collected (P)

ncbi_submitter: Erasmus University Medical Center


ncbi_isolation_source: faecal

ncbi_submitter: SC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Spain

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: PASTEUR


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Peru

ncbi_isolation_source: kidney/liver

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Instituto Tecnologico de la Produccion


ncbi_organism_name: uncultured Wenzhouxiangella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Aureimonas sp. AU12

ncbi_submitter: Graduate School of Life Sciences, Tohoku University


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: rectal swab

ncbi_submitter: Heidelberg University Hospital


ncbi_isolation_source: contaminated marine sediment

ncbi_organism_name: Stutzerimonas decontaminans

ncbi_submitter: University of Balearic Islands


ncbi_organism_name: uncultured Halioglobus sp.

ncbi_submitter: EMG


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Drexel


ncbi_country: Canada: Ottawa

ncbi_isolation_source: platelet concentrate

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Manitoba


ncbi_country: Portugal

ncbi_isolation_source: nasopharynx

ncbi_submitter: Instituto de Tecnologia Quimica e Biologica Antonio Xavier


ncbi_organism_name: Pseudomonas sp.


ncbi_country: Japan: Hokkaido; Sapporo

ncbi_isolate: SMAURBIH

ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_strain_identifiers: SMAURBIH

ncbi_submitter: John McCutcheon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_organism_name: Microbacterium esteraromaticum

ncbi_submitter: MICALIS


ncbi_organism_name: Leclercia sp.


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_submitter: Ares Genetics


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: Denmark

ncbi_isolation_source: intestine

ncbi_organism_name: Gallibacterium anatis

ncbi_submitter: University of Copenhagen


ncbi_country: China: Shanghai

ncbi_isolation_source: Clam

ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Omaha; Nebraska

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium nebraskense

ncbi_refseq_category: reference genome

ncbi_submitter: University of Trento

ncbi_type_material_designation: assembly from type material


ncbi_country: China

ncbi_isolation_source: In-house environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Shewanella sp. AC34-MNA-CIBAN-0136

ncbi_submitter: University of Florence


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Microgenomates bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Microgenomatota;x__unclassified Candidatus Microgenomates;s__Candidatus Microgenomates bacterium


ncbi_country: Antarctica: Mackay Glacier regions; Towle Glacier

ncbi_isolation_source: mineral soil

ncbi_organism_name: Ktedonobacterales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Algeria: Tlemcen

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Paraclostridium sordellii

ncbi_submitter: MEPHI, IRD, APHM, IHU-Mediterranee Infection, Marseille, France


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Gastric tissue

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Escuela Nacional de Ciencias Biologicas, Instituto Politecnico Nacional


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- Umea_bin-10523

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: BILS


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Portland State University


ncbi_country: France

ncbi_isolation_source: Cystic fibrosis sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: CHA

ncbi_submitter: University of Wroclaw


ncbi_country: Norway

ncbi_isolation_source: Retail sushi

ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: NTNU


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Kitchen A

ncbi_organism_name: Tatumella sp. JGM130

ncbi_submitter: Cornell University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Oswaldo Cruz Institute


ncbi_country: Antarctica

ncbi_isolation_source: Antarctica soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: University of New South Wales


ncbi_organism_name: Ureibacillus sp. FSL K6-0786

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Ureibacillus;x__unclassified Ureibacillus;s__Ureibacillus sp. FSL K6-0786


ncbi_assembly_name: freshwater MAG --- MJ_bin-1308

ncbi_organism_name: uncultured Elusimicrobia bacterium


ncbi_country: Norway: Aas

ncbi_isolation_source: Gut

ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_organism_name: Escherichia coli TW14425

ncbi_submitter: Uppsala University


ncbi_country: China: Shaanxi

ncbi_isolation_source: chicken cloacal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Thermotogae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;x__environmental samples;s__uncultured Thermotogae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Latilactobacillus curvatus

ncbi_submitter: World Institute of Kimchi


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; solid retention time of 6 days

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Xiamen City

ncbi_isolation_source: coastal sea water from resevior

ncbi_organism_name: Halomonas sp. MCCC 1A11057

ncbi_submitter: The Third Institute of Oceanography, Ministry of Natural Resources of PR China


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Bifidobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Maryland Baltimore


ncbi_assembly_name: IMG-taxon 2675903134 annotated assembly

ncbi_organism_name: Paractinoplanes atraurantiacus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Angelo; CA

ncbi_isolation_source: Soil sample from Angelo meadow plot 1; 40cm depth; 4 days after first rain event (27mm)

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Queensland


ncbi_country: Netherlands: Utrecht

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Helicobacter sp. 13S00477-4

ncbi_submitter: Utrecht University


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Tang lab


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: Russia: Cheboksary

ncbi_isolation_source: urethal swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences,


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: New York Medical College


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: Chile: Region de Los Lagos

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Anaerotruncus sp.


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China

ncbi_organism_name: Bradyrhizobium aeschynomenes

ncbi_submitter: Yantai Institute of Coastal Zone Research


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Ruminiclostridium sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 201

ncbi_organism_name: Staphylococcus agnetis

ncbi_strain_identifiers: SNUC 2493

ncbi_submitter: University of Calgary


ncbi_isolation_source: endotracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SC


ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: Johannes Gutenberg-University


ncbi_country: Israel

ncbi_isolation_source: animal

ncbi_submitter: Sheba medical center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_submitter: Centers for Disease Control, Taiwan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: EMG


ncbi_country: Finland

ncbi_organism_name: Weissella paramesenteroides

ncbi_submitter: Helsinki University


ncbi_country: Thailand

ncbi_isolation_source: wound

ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;x__unclassified Spiroplasma;s__Spiroplasma endosymbiont of Tiphia femorata


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken caecal content


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: caecum

ncbi_organism_name: Amedibacillus dolichus

ncbi_submitter: Veterinary Research Institute


ncbi_submitter: Christian Medical College


ncbi_country: South Korea: Seoul

ncbi_isolation_source: soil

ncbi_organism_name: Microvirga sp. SRT04

ncbi_submitter: Seoul Women's University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: cocoa fermentation

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: FCFRP


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: uncultured Nitriliruptoria bacterium


ncbi_country: France: Brittany

ncbi_isolation_source: lung

ncbi_organism_name: Mesomycoplasma hyopneumoniae

ncbi_submitter: Anses


ncbi_country: Brazil: Amazonas; Iranduba

ncbi_isolation_source: gut

ncbi_organism_name: Neisseriaceae bacterium ESL0693

ncbi_submitter: University of Lausanne


ncbi_country: Hong Kong

ncbi_isolation_source: blood

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Porphyromonas sp.


ncbi_assembly_name: Rumen uncultured genome RUG12272

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Jorgensenbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Joergenseniibacteriota;x__unclassified Candidatus Jorgensenbacteria;s__Candidatus Jorgensenbacteria bacterium


ncbi_isolation_source: SWINE INTESTINE

ncbi_organism_name: Escherichia coli

ncbi_submitter: istituto zooprofilattico sperimentale della lombardia e dell'emilia romana


ncbi_country: Mexico

ncbi_isolation_source: river water

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_isolation_source: liver

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolate: AACE

ncbi_organism_name: Burkholderia sp.

ncbi_strain_identifiers: AACE

ncbi_submitter: Johannes Gutenberg University Mainz


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Rakuno Gakuen University; Mansoura University; Zewail City of Science and Technology


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Fermentimonas sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_submitter: AIT AUSTRIAN INSTITUTE OF TECHNOLOGY


ncbi_isolation_source: Culture

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Helicobacter ganmani


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Tateyamaria sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Japan

ncbi_isolation_source: soy sauce mash

ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: South Korea

ncbi_isolation_source: dried fermented soybeans (Meju)

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: CHUNG ANG UNIVERSITY


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Dysgonamonadaceae bacterium


ncbi_country: USA: Texas

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_isolation_source: soil

ncbi_organism_name: Actinomadura sp. NBRC 104412

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: China: Bohai Sea

ncbi_isolation_source: 0-2 cm sediment from station BHB10 in the Bohai Sea

ncbi_organism_name: Fimbriimonadia bacterium

ncbi_submitter: Shandong University


ncbi_country: Estonia

ncbi_isolation_source: tracheal aspirate

ncbi_submitter: University of Tartu


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Victivallales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_isolation_source: Missouri River

ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: Ohio State university


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimonas balearica

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Collinsella aerofaciens


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: TX

ncbi_isolation_source: Blood

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_country: France: Lyon

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CIRI


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Christensenella sp.


ncbi_isolation_source: feces

ncbi_organism_name: Lactobacillus hominis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Teesside University


ncbi_isolation_source: secreta

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Yangzhou University


ncbi_country: Germany: Bavaria; Wolnzach/Pfaffenhofen a. d. Ilm; pond Postweiher

ncbi_organism_name: Listeria weihenstephanensis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: East China Normal University


ncbi_submitter: Shanghai Jiahui International Hospital


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Desulfovibrio fairfieldensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Micrococcus sp. TCR-5

ncbi_submitter: Gauhati University


ncbi_organism_name: Candidatus Pseudothioglobus sp.

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Pseudothioglobus;x__unclassified Candidatus Pseudothioglobus;s__Candidatus Pseudothioglobus sp.


ncbi_organism_name: Collinsella sp.


ncbi_submitter: Center for Microbial Communities


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Candidatus Marinacidobacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Vicinamibacteria;o__Candidatus Marinacidobacterales;f__Candidatus Marinacidobacteraceae;g__Candidatus Marinacidobacterium;x__unclassified Candidatus Marinacidobacterium;s__Candidatus Marinacidobacterium sp.


ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: China National Center for Food Safety Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Agriterribacter sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_isolate: SPRUCE 128

ncbi_organism_name: Roseiarcus sp.

ncbi_strain_identifiers: SPRUCE 128

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: University of East Anglia


ncbi_country: Canada: Kootenay National Park; BC

ncbi_isolation_source: soil-free differetial centrifugation fraction

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Candidatus Saganbacteria bacterium

ncbi_submitter: Universite Laval

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;x__Candidatus Saganbacteria;s__Candidatus Saganbacteria bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Mailhella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Chloroflexota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Povo; fraction of Trento

ncbi_isolation_source: gut content

ncbi_organism_name: Catenibacterium mitsuokai subsp. tridentinum

ncbi_submitter: University of Trento


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: East China Normal University


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-13077

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolate: SPRUCE 508

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 508


ncbi_country: Denmark: Damhusaen

ncbi_isolation_source: activated sludge from Damh_18-Q3-R51-60

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Christensenella sp. UBA4246

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Corynebacterium sp.


ncbi_country: Pakistan

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NCTR/US FDA


ncbi_organism_name: Halioglobus sp.

ncbi_submitter: Linnaeus University


ncbi_isolation_source: soil

ncbi_organism_name: Enterobacter sp. Z1

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GW456-E6

ncbi_submitter: Arkin Lab


ncbi_isolation_source: Human (stool)

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Universidad Andres Bello

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Salibacteraceae bacterium

ncbi_submitter: Palmer LTER


ncbi_country: Philippines

ncbi_isolation_source: Diarrhea

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Spain: Cabra

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Virgen Macarena


ncbi_organism_name: Xanthomonas cassavae CFBP 4642

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Duncaniella sp.


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: EMG


ncbi_country: Thailand: Bangkok

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chulalongkorn University


ncbi_country: China: Taizhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: [Clostridium] scindens

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Zurich


gtdb_type_species_of_genus: t

ncbi_country: China: Xinjiang Province

ncbi_organism_name: Kumtagia ephedrae

ncbi_submitter: Chinese Academy of Forestry


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Ireland: Johnstown Castle; Wexford

ncbi_isolation_source: soil no manure

ncbi_strain_identifiers: SC NM EMB KAN 2

ncbi_submitter: Maynooth University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Southern Ocean: South Pole

ncbi_isolation_source: Seawater bacteria liquid

ncbi_organism_name: Pseudoalteromonas sp. Xi13

ncbi_submitter: First Institute of Oceanology, State Oceanic Administration, China.


ncbi_isolation_source: stool

ncbi_submitter: URMITE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Adlercreutzia sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: United Kingdom:Truro

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Canada: Toronto

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of Saskatchewan


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA

ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_strain_identifiers: CIRM BIA 1579

ncbi_submitter: Agroscope


ncbi_isolation_source: human skin

ncbi_organism_name: Haematobacter missouriensis

ncbi_submitter: NIH/NHGRI


ncbi_country: Russia

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Ginsengibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Norway

ncbi_isolation_source: Bivalve mollusc

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IMR


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Campbelliibacteriota;s__Candidatus Campbellbacteria bacterium CG22_combo_CG10-13_8_21_14_all_43_18


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Pollutimonas thiosulfatoxidans

ncbi_submitter: Jeju National University


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Denmark: Copenhagen;Rigshospitalet

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Acinetobacter baumannii 53264

ncbi_submitter: SCELSE


ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Stutzerimonas kunmingensis


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: USA: CA

ncbi_isolation_source: feces of cat named Lilbub from private home

ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: AnimalBiome


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: China: Liaoning

ncbi_isolation_source: lung

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Special Animal and Plant Sciences, The Chinese Academy of Agricultural Sciences,


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__environmental samples;s__uncultured Candidatus Izemoplasmatales bacterium


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_submitter: Miguel Servet University Hospital


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Clostridioides difficile P78

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Prevotella melaninogenica


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Jyvaskyla


ncbi_country: United Kingdom: Huddersfield

ncbi_isolation_source: Bioreactor

ncbi_organism_name: Brevundimonas sp. ZS04

ncbi_submitter: University of Huddersfield


ncbi_country: Canada: Lake Hazen

ncbi_organism_name: Candidatus Shapirobacteria bacterium

ncbi_submitter: University of Ottawa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;x__unclassified Candidatus Shapirobacteria;s__Candidatus Shapirobacteria bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: seawater

ncbi_submitter: Deep-Sea Bioresource Research Group , Research Center for Bioscience and Nanoscience (CeBN), Japan Agency for Marine-Earth Science and Technology (JAMSTEC)


ncbi_isolation_source: human gut

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF COLORADO DENVER, SCHOOL OF MEDICINE


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F91084

ncbi_submitter: Broad Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_country: China

ncbi_isolation_source: mudflat marine sediment

ncbi_organism_name: Maribacter polysaccharolyticus

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus malodoratus

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Senegalimassilia sp.

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_organism_name: Lachnospiraceae bacterium AC2028

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: China: Heilongjiang Province

ncbi_isolation_source: cucumber rhizosphere

ncbi_organism_name: Paenibacillus silvae

ncbi_submitter: Technical University of Denmark


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Fujian

ncbi_isolation_source: Brain tissue of dead ducks

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: liaocheng university


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Caldanaerobacter sp.

ncbi_submitter: The Ohio State University


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Weifang People's Hospital


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Inha University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: WA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: FDA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: United Kingdom

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Oxford


ncbi_country: Denmark: Kgs. Lyngby

ncbi_isolation_source: pool of bioreactors CSTR01a; CSTR02a; and CSTR03a; thermophilic anaerobic digestion of cattle manure in continuous reactors for biogas production (methane)

ncbi_organism_name: Clostridiales bacterium DTU075


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Phocaeicola sp.


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: Cyanophyceae cyanobacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Taipei Veterans General Hospital


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimicrobium acidiphilum

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Solirubrobacteraceae bacterium


ncbi_country: Saudi Arabia: Riyadh

ncbi_submitter: University College Dublin


ncbi_country: Switzerland

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: Sweden: Oresund

ncbi_isolation_source: top-layer sediments

ncbi_organism_name: Yoonia vestfoldensis

ncbi_submitter: University of Gothenburg


ncbi_country: Australia

ncbi_isolation_source: mucosal tissue from Crohns disease patient

ncbi_organism_name: Clostridium sp.

ncbi_submitter: University of Queensland


ncbi_country: Norway: Bergen

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Haukeland University Hospital


ncbi_country: USA: Nebraska

ncbi_isolation_source: Liver; lung; small intestine

ncbi_submitter: University of Nebraska-Lincoln

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured PS1 clade bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__environmental samples;s__uncultured PS1 clade bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Victivallis sp.


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: China: Shenzhen

ncbi_organism_name: Dorea longicatena

ncbi_submitter: BGI


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: nivip


ncbi_assembly_name: IMG-taxon 2568526002 annotated assembly

ncbi_organism_name: Andreprevotia lacus DSM 23236

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: udder swab from cow With mastitis

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidade Federal do Rio de Janeiro - UFRJ


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Nanjing

ncbi_isolation_source: calla lily

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pectobacteriaceae;g__Pectobacterium;s__Pectobacterium carotovorum;sb__Pectobacterium carotovorum subsp. carotovorum;x__Pectobacterium carotovorum subsp. carotovorum PCCS1


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Chengdu; Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Argentina: San Carlos Sur

ncbi_isolation_source: first pond of the CYC serial dairy industry stabilization pond system

ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_submitter: INTA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Princeton University


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: India

ncbi_isolation_source: Local soil sample

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: P D Patel Institute of Applied Sciences, Charotar University of Science and Technology


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Italy: Rome

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: University of Rome "La Sapienza"


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EBI


ncbi_isolation_source: urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Jinan University


ncbi_isolation_source: Faeces

ncbi_organism_name: Rodentibacter pneumotropicus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater under a natural surface slick

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Colombia: Popayan

ncbi_isolation_source: Pleural fluid

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidad El Bosque


ncbi_country: Belgium

ncbi_isolation_source: leaves

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Aarhus University


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Aerococcus urinae

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: sludge

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University Hospital Muenster


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: environmental

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Candidatus Onthovivens sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;g__Candidatus Onthovivens;x__unclassified Candidatus Onthovivens;s__Candidatus Onthovivens sp.


ncbi_isolation_source: wildlife recovery center

ncbi_organism_name: Chlamydia sp. 17-3921

ncbi_submitter: ANSES


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: EMG


ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Netherlands: Flevoland

ncbi_isolation_source: potato root

ncbi_organism_name: Pseudomonas capeferrum

ncbi_submitter: Utrecht University, Utrecht, NETHERLANDS


ncbi_country: USA: NY

ncbi_isolation_source: blood

ncbi_organism_name: Paracoccus sanguinis

ncbi_submitter: Wadsworth Center / NYSDOH


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0275R

ncbi_submitter: Broad Institute


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Israel: Mediterranean Sea; Palmahim Disturbance brine pool

ncbi_isolation_source: brine pool

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sagittula sp.

ncbi_submitter: Tang lab


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: pyrene-degrading consortium enriched from deep-sea sediment

ncbi_organism_name: Isoalcanivorax pacificus W11-5

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA), China.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_organism_name: Escherichia coli


ncbi_organism_name: Micrococcus sp. HMSC067E09

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: Food

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: Canada

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Aminicella lysinilytica

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Microbacterium sp. NPDC090218

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Mexico

ncbi_organism_name: Vibrio cholerae CP1033(6)

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Campylobacter coli 76339

ncbi_submitter: UH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospira sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: White Oak River estuary; North Carolina; USA

ncbi_isolation_source: estuarine anaerobic sediment

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Fusobacteriota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Antarctica: Eastern Antarctica; Mount Seuss

ncbi_isolate: MSU bin52

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: MSU bin52

ncbi_submitter: Monash University


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: uncultured Azospirillaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Zhejiang university


ncbi_organism_name: Gardnerella swidsinskii

ncbi_submitter: Drexel University College of Medicine


ncbi_organism_name: Bacillus pacificus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptococcus agalactiae


ncbi_organism_name: uncultured Candidatus Binatia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__environmental samples;s__uncultured Candidatus Binatia bacterium


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Treponemataceae bacterium


ncbi_organism_name: uncultured Rhodobacterales bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Bacillota bacterium HCP3S3_F1_2

ncbi_submitter: Quadram Institute Bioscience

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Bacillota bacterium HCP3S3_F1_2


ncbi_organism_name: Peribacillus frigoritolerans


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Affiliated Jinhua Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Milan


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Burkholderiales bacterium


ncbi_organism_name: Streptomyces sp. NBC_01171

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Scardovia wiggsiae

ncbi_submitter: IHU Mediterranee Infection


ncbi_assembly_name: freshwater MAG --- Ki2-D2_bin-0643

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Auburn University


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__environmental samples;s__uncultured Candidatus Accumulibacter sp.


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Wroclaw University of Environmental and Life Sciences


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Salmonella sp. C3275

ncbi_submitter: Sichuan University


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Citrobacter arsenatis

ncbi_submitter: INSTITUTE OF MEDICAL SCIENCES, BANARAS HINDU UNIVERSITY, VARANASI, INDIA


ncbi_country: USA: TX

ncbi_organism_name: Listeria farberi

ncbi_submitter: Cornell University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Duisburg Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: Zhejiang University


ncbi_country: China: natural habitat soil

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Tianjin University


ncbi_organism_name: Eubacterium coprostanoligenes

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Paracoccus sp.

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: Arabidopsis thaliana seedling from surface sterilized seed

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Pretoria


ncbi_country: Portugal

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: ATCC


ncbi_isolate: VmadE symbiont

ncbi_isolation_source: Vangueria madagascariensis leaf

ncbi_organism_name: uncultured Paraburkholderia sp.

ncbi_strain_identifiers: VmadE symbiont

ncbi_submitter: inrae toulouse


ncbi_organism_name: Flavonifractor plautii


ncbi_organism_name: Streptomyces phaeochromogenes

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Tateyamaria sp.

ncbi_submitter: marine college, shandong university


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Marinomonas primoryensis


ncbi_isolation_source: Dog

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Candidatus Wolfebacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wolfeibacteriota;x__unclassified Candidatus Wolfebacteria;s__Candidatus Wolfebacteria bacterium


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_organism_name: Methylophilales bacterium UBA4017

ncbi_submitter: University of Queensland


ncbi_country: Croatia: Zagreb

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Croatian Veterinary Institute, Zagreb


ncbi_country: Spain

ncbi_isolation_source: Sheep Milk

ncbi_organism_name: Corynebacterium camporealensis

ncbi_submitter: UFMG Brazil


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of La Rioja


ncbi_country: USA: Philadelphia

ncbi_isolation_source: fresh mint

ncbi_submitter: USDA


ncbi_organism_name: Buchnera aphidicola

ncbi_submitter: CENTRE FOR GENOMIC RESEARCH UNIVERSITY OF LIVERPOOL


ncbi_country: Pakistan

ncbi_isolation_source: dairy Farm

ncbi_submitter: Institute of microbiology University of Agriculture Faisalabad


ncbi_country: Turkey: Adana

ncbi_isolation_source: Field

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: University of Toronto Mississauga

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: Switzerland

ncbi_isolation_source: rectal swab

ncbi_submitter: University of Bern


ncbi_country: USA

ncbi_isolation_source: farm soil

ncbi_submitter: University of Florida


ncbi_organism_name: Paracoccus marcusii


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Escherichia coli KTE167

ncbi_submitter: Broad Institute


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_submitter: Ausgem


ncbi_country: France: Limoges

ncbi_isolation_source: Toilette

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Universite Paris Sud


ncbi_isolation_source: Outdoors environment of a veterinary clinic


ncbi_organism_name: Pseudomonas sp. 2023EL-01195

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Paenibacillus sp. FSL H3-0329

ncbi_submitter: Penn State


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Canada: Guelph

ncbi_isolation_source: swab from oral cavity

ncbi_organism_name: Mycoplasma procyoni

ncbi_submitter: US FDA


ncbi_country: Malaysia: Kuala Terengganu; Terengganu

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: University of Western Australia


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Farm workers

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_submitter: FSRIVI "Virome" Rospotrebnadzor


ncbi_country: China

ncbi_isolation_source: secreta

ncbi_submitter: Yangzhou University


ncbi_isolation_source: stool

ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: Rumen uncultured genome RUG12543

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: SponGES


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Brazil: Salvador

ncbi_strain_identifiers: Fiocruz LV2791

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. Fiocruz LV2791


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Tara Oceans Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Chloracidobacterium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Crinalium sp.

ncbi_submitter: Zhejiang University


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: South Korea

ncbi_isolation_source: sediments

ncbi_organism_name: Sphingomicrobium aestuariivivum

ncbi_submitter: Second Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Japan: Niigata

ncbi_isolation_source: Subgingival plaque; periodontal pocket

ncbi_organism_name: Mogibacterium pumilum

ncbi_submitter: The Forsyth Institute


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_isolation_source: UTI

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Tufts University


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides caecimuris


ncbi_country: Colombia: Barranquilla

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Nepal: Kanti

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Armed Forces Research Institute of Medical Sciences (AFRIMS)


ncbi_country: Denmark: Kalo Vig; Aarhus Bay

ncbi_isolation_source: coastal marine sediment

ncbi_organism_name: Mariprofundus sp. KV

ncbi_strain_identifiers: KV

ncbi_submitter: University of Tuebingen


ncbi_country: USA

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Jacobs School of Medicine and Biomedical Sciences, University at Buffalo


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Sporanaerobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudomonas sp. 5S2

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_country: Thailand:Nakhon Sawan

ncbi_isolation_source: Tropical forest soil

ncbi_organism_name: Dactylosporangium siamense

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_isolation_source: Marine sand from the surface of the seashore around a seaweed farm at Geoje island in the South Sea; South Korea

ncbi_organism_name: Ruegeria arenilitoris

ncbi_strain_identifiers: CECT 8715

ncbi_submitter: UVEG


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Merdibacter sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Motiliproteus sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Aeromonas sp. S11(2024)

ncbi_submitter: the Chinese University of Hong Kong


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: USDA 175

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Lacombe

ncbi_organism_name: bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Denmark: Lyngby

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: DTU Biosustain


ncbi_country: Singapore

ncbi_isolation_source: wet market

ncbi_submitter: SCELSE, Nanyang Technological University, Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: Shatin; Hong Kong

ncbi_isolation_source: activated sludge

ncbi_organism_name: Mycobacterium sp. ST-F2

ncbi_submitter: The University of Hong Kong


ncbi_country: Taiwan:Tainan City

ncbi_submitter: Centers for Disease Control, Taiwan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_organism_name: Streptococcus infantis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_assembly_name: Rumen uncultured genome RUG13119

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: University of Queensland


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae HC-21A1

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: western arm Lake Superior

ncbi_isolation_source: freshwater cyanobacterial bloom

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: University of Minnesota Duluth


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: France

ncbi_isolation_source: cheese (Cantal)

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_strain_identifiers: CIRM-BIA 1477

ncbi_submitter: Brigham Young University


ncbi_organism_name: Streptomyces sp. HB132

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptomyces erythrochromogenes

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolate: S67 bin 3

ncbi_organism_name: Nostoc sp.

ncbi_strain_identifiers: S67 bin 3

ncbi_submitter: Duke University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Actinomadura formosensis NBRC 14204

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: China

ncbi_isolation_source: coastal seawater

ncbi_organism_name: Paracoccus xiamenensis

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: human gut

ncbi_organism_name: Acholeplasmatales bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken farm

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: sichuan university


ncbi_organism_name: Proteus columbae

ncbi_submitter: the seqafrica consortium


ncbi_assembly_name: Rumen uncultured genome RUG11373

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Algibacter lectus

ncbi_submitter: marine college, shandong university


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: NSW

ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology


ncbi_organism_name: Actibacterium naphthalenivorans


ncbi_country: USA: Temple; TX

ncbi_isolation_source: wound swab

ncbi_organism_name: Lelliottia nimipressuralis

ncbi_submitter: Central Texas Veterans Health Care System


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Luzhou

ncbi_isolation_source: no

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Southwest Medical University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Tannerella sp.

ncbi_submitter: Center for Bioinformatics


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: Mexico: Guadalajara

ncbi_isolation_source: Wound secretions

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Acidithiobacillaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_strain_identifiers: Ballerup 7851

ncbi_submitter: Wellcome Trust Sanger Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter;x__Citrobacter freundii complex;s__Citrobacter freundii;x__Citrobacter freundii str. ballerup 7851/39


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Staphylococcus sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Poland

ncbi_organism_name: Hafnia alvei

ncbi_submitter: nankai university


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_country: USA: PA

ncbi_isolation_source: pleural cavity

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium


ncbi_country: Thailand: Uttaradit

ncbi_isolation_source: Hemoculture

ncbi_organism_name: Streptococcus suis YB51

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: Bacillus paramycoides

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 25493_9

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China: Ordos Plateau

ncbi_isolation_source: root

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Institute of Biotechnology, Zhejiang University


ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Vibrio sagamiensis NBRC 104589

ncbi_submitter: University of Miyazaki

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio sagamiensis;x__Vibrio sagamiensis NBRC 104589


ncbi_country: China: Shandong

ncbi_isolation_source: anal swabs from commercial chicken farm

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_isolation_source: feces

ncbi_organism_name: Salmonella sp. SM-99

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: USA: California

ncbi_isolation_source: Alpaca; fecal

ncbi_organism_name: Campylobacter vicugnae

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: Mexico

ncbi_isolation_source: Heads

ncbi_organism_name: Leuconostoc sp. S51

ncbi_submitter: USDA-ARS-Beltsville Sustainable Perennial Crops Laboratory


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Rhizobium sp.

ncbi_submitter: EMG


ncbi_country: Antarctica: James Ross Island; Lachman Crags

ncbi_isolation_source: volcanic rock

ncbi_organism_name: Hymenobacter lapidiphilus

ncbi_submitter: Masaryk University


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: USA: FL

ncbi_isolation_source: fecal beef calf

ncbi_submitter: US Food and Drug Administration


ncbi_country: Japan

ncbi_isolation_source: urine

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: wound secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: USA: Massachusetts; East Wareham

ncbi_isolation_source: berry surface

ncbi_organism_name: Pseudomonas sp. MWU347

ncbi_submitter: Midwestern University


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Infantis

ncbi_submitter: University of Maryland Eastern Shore


ncbi_isolation_source: stem

ncbi_organism_name: Pectobacterium parmentieri

ncbi_submitter: University of Gdansk, Intercollegiate Faculty of Biotechnology UG&MUG


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Thalassospira xiamenensis

ncbi_submitter: University of Queensland


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Shenzhen

ncbi_isolation_source: shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: blood

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: University of Nebraska Medical Center


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: France

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Inserm


ncbi_organism_name: Bacillus anthracis str. Tsiankovskii-I

ncbi_strain_identifiers: Tsiankovskii-I

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus anthracis;x__Bacillus anthracis str. Tsiankovskii-I


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Nitrospirota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__environmental samples;s__uncultured Nitrospirota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Rickettsia sibirica

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Abditibacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Heze University


ncbi_submitter: National Health Research Institutes

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Puerhibacterium sp. TATVAM-FAB25

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_organism_name: Parasutterella excrementihominis


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Cloacibacterium caeni

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: Blautia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Prevotellaceae bacterium


ncbi_organism_name: Aeromonas rivipollensis

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Micromonospora lupini

ncbi_strain_identifiers: Lupac 14N

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite de Limoges


ncbi_isolate: AOP29_E1_surf _bin _8

ncbi_organism_name: Corynebacterium flavescens

ncbi_strain_identifiers: AOP29_E1_surf _bin _8

ncbi_submitter: Genoscope


ncbi_assembly_name: burkholderia pyrrocinia

ncbi_organism_name: Burkholderia pyrrocinia

ncbi_submitter: Nanchang Institute of Technology


ncbi_organism_name: Nocardia tengchongensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bartonella bacilliformis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG13365

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured Synergistaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: marine water

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: East China University of Science and Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Diagnostic and Monitoring of Animal pathogens


ncbi_country: USA: VA

ncbi_isolation_source: sediment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Dickeya solani

ncbi_submitter: Sorbonne University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: stool

ncbi_organism_name: Dorea longicatena

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Australia: Brisbane

ncbi_isolation_source: necrotising fasciitis wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Staphylococcus sp. HMSC062C01

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Streptomyces sp. NPDC001422

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Gardnerella vaginalis


ncbi_isolation_source: feces

ncbi_submitter: Third Military Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Hangzhou

ncbi_isolation_source: body fluid

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University