ncbi_organism_name: Aquirufa antheringensis

ncbi_submitter: The Microflora Danica Consortium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: shandong university


ncbi_country: China: Chengdu; Sichuan

ncbi_submitter: West China Hospital, Sichuan University


gtdb_representative: t

ncbi_country: Germany: Kronsgaard

ncbi_isolation_source: marine sediment

ncbi_organism_name: Labrenzia sp. 011

ncbi_submitter: University of Bonn


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_strain_identifiers: Gar CS 19

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_genome_category: derived from metagenome

ncbi_organism_name: Maribacter dokdonensis

ncbi_submitter: University of Southern California


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: United Kingdom: England

ncbi_isolation_source: Surgical site

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liverpool


ncbi_assembly_level: Scaffold

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Complete Genome

ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: National Institute of Animal Health, National Agriculture and Food Research Organization

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. paratuberculosis


ncbi_organism_name: Serratia quinivorans

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: USA: Yellowstone National Park

ncbi_isolation_source: Hot spring water

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Montana State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Oliverpabstia sp.

ncbi_submitter: Wilmar International Limited


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Canada: Alberta

ncbi_isolation_source: Enterococcosel

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BGI


ncbi_country: China: Zhongshan

ncbi_isolation_source: blood from cirrhosis patient

ncbi_organism_name: Campylobacter fetus subsp. testudinum

ncbi_submitter: Guangzhou University of Chinese Medicine


ncbi_country: Oman

ncbi_isolation_source: blood

ncbi_submitter: Sultan Qaboos University


ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus hominis

ncbi_strain_identifiers: acrmc

ncbi_submitter: NHGRI/NIH


ncbi_country: Pakistan

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Negativicutes bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Neomicrothrix parvicella

ncbi_submitter: University of Queensland


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Plesiomonas shigelloides

ncbi_submitter: UFMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy

ncbi_isolation_source: oropharyngeal swab

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_organism_name: Streptomyces sp. NPDC059131

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Brazil: Belo Horizonte

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_organism_name: Phaeovulum sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Candidatus Promineifilaceae bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;x__unclassified Candidatus Promineifilaceae;s__Candidatus Promineifilaceae bacterium


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Izemoplasmatales bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__unclassified Candidatus Izemoplasmatales;s__Candidatus Izemoplasmatales bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_organism_name: Salmonella sp. 2021_486

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_organism_name: uncultured Desulfobacteraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: WA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Washington


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus raffinosus

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: SIP-labeled bacteria involved in mucosal sugar uptake in the mouse colon

ncbi_organism_name: Angelakisella sp.

ncbi_submitter: University of Vienna


ncbi_organism_name: Streptomyces sp. NPDC058251


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1210

ncbi_submitter: Broad Institute


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University


ncbi_isolation_source: lung of animal with pneumonia

ncbi_submitter: Laboratory for Genomics and Bioinformatics, University of Oklahoma Health Sciences Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Pasteurella;s__Pasteurella multocida;sb__Pasteurella multocida subsp. multocida;x__Pasteurella multocida subsp. multocida str. 3480


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Brazil

ncbi_isolation_source: Feces

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: Urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: Japan

ncbi_isolation_source: sputum

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Shinshu University Graduate School of Medicine, Science and Technology


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Academy of Military Medical Science


ncbi_country: Portugal: Baixo Vouga Lagunar

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Aveiro


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Proteobacteria bacterium UBA1673

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA1673


ncbi_organism_name: Veillonella parvula

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Enterococcus sp. DIV0682

ncbi_submitter: Broad Institute


ncbi_organism_name: Roseateles saccharophilus

ncbi_submitter: Collection de l'Institut Pasteur

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Chthonomonadaceae bacterium


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Nanjing University


ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_submitter: UIUC


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: deep-sea sponge Neamphius huxleyi

ncbi_organism_name: Proteobacteria bacterium UBA6729

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA6729


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Enorma massiliensis


ncbi_organism_name: Candidatus Avilachnospira sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Avilachnospira;x__unclassified Candidatus Avilachnospira;s__Candidatus Avilachnospira sp.


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Castellaniella sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_organism_name: Yersinia enterocolitica

ncbi_strain_identifiers: 3224 StPb PI

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: L colon

ncbi_organism_name: Bacteroides fragilis str. S38L3

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides fragilis;x__Bacteroides fragilis str. S38L3


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_submitter: SC


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. microtus;x__Yersinia pestis subsp. microtus bv. Caucasica


ncbi_country: Spain: central part

ncbi_isolation_source: Oncorhynchus mykiss

ncbi_organism_name: Flavobacterium plurextorum

ncbi_submitter: FDA


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_country: China: Shanghai

ncbi_submitter: Huashan hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni


ncbi_country: Belize: Mesoamerican Barrier Reef; Carrie Bow Cay

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Stony Brook University


ncbi_country: China

ncbi_isolation_source: Sichuan; China

ncbi_organism_name: Leptospira weilii

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_organism_name: Pseudomonas aeruginosa PA103

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: University of Waterloo


ncbi_isolate: Fecal samples

ncbi_isolation_source: PAR

ncbi_strain_identifiers: Fecal samples


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Kenya: Shimba Hills National Reserve; car-park

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. SH5-2

ncbi_submitter: University of Bialystok

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus sp. SH5-2


ncbi_country: Malaysia: Klang

ncbi_organism_name: Leptospira interrogans serovar Yeoncheon

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_submitter: IMR


ncbi_country: New Zealand: Auckland

ncbi_isolation_source: Northboro reserve storm water drain

ncbi_submitter: Massey University


ncbi_assembly_level: Chromosome

ncbi_country: Canada

ncbi_isolation_source: Petri dish

ncbi_organism_name: Burkholderia ambifaria

ncbi_strain_identifiers: AU0212 Variant

ncbi_submitter: University of Melbourne


ncbi_organism_name: Chitinophaga ginsengisegetis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Xinxiang

ncbi_isolation_source: intestinal tract

ncbi_organism_name: Brachybacterium subflavum

ncbi_refseq_category: reference genome

ncbi_submitter: Henan Normal University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium longum;sb__Bifidobacterium longum subsp. longum;x__Bifidobacterium longum subsp. longum 2-2B


ncbi_organism_name: Nitrosopumilus sp.

ncbi_submitter: Tang lab


ncbi_country: Nigeria: Lagos; Takwa Bay

ncbi_isolation_source: shoreline saltwater

ncbi_strain_identifiers: TAK 134

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ GmbH


ncbi_country: France

ncbi_isolation_source: feces from asymptomatic infant

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nottingham Trent University, UK


ncbi_country: South Korea: Jeongeup-si

ncbi_isolation_source: Flower of Dendranthema zawadskii

ncbi_organism_name: Duganella dendranthematis

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_country: Portugal: Viseu

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Enterococcus casseliflavus EC20

ncbi_submitter: Broad Institute


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Gemella sp.

ncbi_submitter: EMG


ncbi_country: India: Kashmir; Pampore

ncbi_isolation_source: cormosphere of the plant

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Jammu


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Holdemania sp.


ncbi_country: USA

ncbi_isolation_source: Ground beef

ncbi_submitter: Agricultural Research Service, United States Department of Agriculture

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Lille


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Zhejiang provincial center for disease control and prevention


ncbi_isolation_source: lettuce field

ncbi_organism_name: Xanthomonas hortorum pv. vitians

ncbi_submitter: University Claude Bernard Lyon 1


ncbi_organism_name: Alcaligenes sp.

ncbi_submitter: University of Waterloo


ncbi_country: Italy

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Kasetsart University


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Japan

ncbi_isolation_source: gastric biopsies

ncbi_submitter: Oita University


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University of Copenhagen


ncbi_country: Norway: Bergen

ncbi_isolation_source: wastewater

ncbi_organism_name: Klebsiella sp. K4-130

ncbi_submitter: Institute of Marine research


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli KTE53


ncbi_organism_name: uncultured Propionibacterium sp.


ncbi_organism_name: Streptomyces lavendulocolor

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chinese People's Liberation Army General Hospital


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: environmental surface

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: SC


ncbi_isolation_source: unknown

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Germany

ncbi_organism_name: Chryseobacterium defluvii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: CNR Escherichia coli


ncbi_isolation_source: Freshwater lake

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Lentimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Kenya

ncbi_isolation_source: stool

ncbi_submitter: University of Nairobi


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_organism_name: Candidatus Enterococcus lemimoniae

ncbi_submitter: Broad Institute


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab


ncbi_country: China: Shanghai

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_organism_name: Lysinibacillus fusiformis


ncbi_country: China: Hangzhou

ncbi_isolation_source: oil-polluted soil

ncbi_organism_name: Intrasporangium calvum

ncbi_submitter: Tsinghua university


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: CDC


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Japan:Chiba; Kururi

ncbi_isolation_source: soil

ncbi_organism_name: Variovorax boronicumulans

ncbi_submitter: Shizuoka University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Spain

ncbi_organism_name: Aliicoccus persicus

ncbi_submitter: Quadram Institutte


ncbi_assembly_name: Draft genome of Kocuria salsicia G1

ncbi_isolate: Kocuria salsicia

ncbi_isolation_source: Meat Chopper / Grinder in a Danish Slaughterhouse

ncbi_organism_name: Kocuria salsicia

ncbi_strain_identifiers: G1;Kocuria salsicia

ncbi_submitter: Universitetsparken 15


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Thailand: Phayao

ncbi_isolation_source: tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Faculty of Public Health


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Escherichia coli

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_country: Czech Republic: Zofinsky prales National Nature Reserve

ncbi_isolation_source: decomposing wood from intermixed hardwood and conifers

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Czech Academy of Science


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: University of Michigan


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EBI


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-09921

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: WA; Badgingarra

ncbi_organism_name: Mesorhizobium sp. B2-6-3

ncbi_submitter: Curtin University


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Inha University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Streptosporangium sp. NPDC002524


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: culture

ncbi_submitter: University of Zurich


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: JOHN INNES CENTRE, NORWICH, UK.


ncbi_country: Canada: Havelock; Quebec

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Pseudomonas sp. B21-041

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_country: Malaysia

ncbi_isolation_source: lettuce leaf

ncbi_organism_name: Enterobacter asburiae L1

ncbi_submitter: UNIVERSITY OF MALAYA


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: stool

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of California San Francisco


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Guadeloupe: Pointe de la Grande Vigie; Guadeloupe; France

ncbi_isolation_source: termite gut

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangnan University


ncbi_organism_name: Roseburia sp.


ncbi_organism_name: uncultured Puniceicoccaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter modestus

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alcanivorax sp. UBA679

ncbi_submitter: University of Queensland


ncbi_country: USA:New Jersey; Wharton State Forest; Hawkins Bridge

ncbi_isolation_source: gut dissection

ncbi_organism_name: Mesoplasma whartonense

ncbi_submitter: University of Connecticut


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Bergeyella cardium

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Megasphaera elsdenii


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Winkia sp. UMB10116

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: China

ncbi_isolation_source: intestine

ncbi_organism_name: Thiopseudomonas alkaliphila

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Bacteroidia bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: University of Calgary


ncbi_isolate: CB5 bin11

ncbi_organism_name: Bacteroidales bacterium

ncbi_strain_identifiers: CB5 bin11

ncbi_submitter: China Agricultural University


ncbi_country: USA: Camp Ernst Lake

ncbi_isolation_source: surface water collection during the late summer

ncbi_organism_name: Exiguobacterium sp. LL15

ncbi_submitter: Northern Kentucky University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. LL15


gtdb_type_species_of_genus: t

ncbi_assembly_name: IMG-taxon 2634166307 annotated assembly

ncbi_organism_name: Winogradskyella thalassocola

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: human skin

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Ruminococcus bromii


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_organism_name: Synechocystis sp. PCC 6803

ncbi_strain_identifiers: GT-S

ncbi_submitter: Graduate School of Arts and Sciences, University of Tokyo


ncbi_country: Tanzania

ncbi_isolation_source: Nasal

ncbi_organism_name: Staphylococcus aureus


ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_organism_name: Kitasatospora aureofaciens

ncbi_strain_identifiers: NRRL B-1286

ncbi_submitter: University of Illinois


ncbi_submitter: Hangzhou Children's Hospital


ncbi_organism_name: Reinekea sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Gloeobacterales cyanobacterium

ncbi_submitter: East China Normal University


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_country: USA: WA

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: University of Washington


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Penn State University


ncbi_country: China: Guangzhou

ncbi_isolation_source: ascites

ncbi_organism_name: Campylobacter fetus subsp. testudinum

ncbi_submitter: Guangzhou Center for Disease Control and Prevention


ncbi_organism_name: uncultured Nitrospiraceae bacterium

ncbi_submitter: European Institute of the Sea (IUEM) - France


ncbi_country: Spain

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Australia: Melbourne

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 35 (4-2962667)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 35 (4-2962667)


ncbi_organism_name: Bradyrhizobium sp. BWA-3-5

ncbi_submitter: I2BC CNRS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Jyvaskyla


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine environment

ncbi_organism_name: Synechococcus sp. PROS-9-1

ncbi_submitter: Station Biologique de Roscoff (CNRS - Sorbonne University)


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Spain: Valladolid

ncbi_isolation_source: rectal smear surveillance

ncbi_submitter: RESCOL


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: Water column of Rimov Reservoir; Czechia

ncbi_organism_name: Candidatus Methylopumilus universalis

ncbi_submitter: Biology Centre CAS, Institute of Hydrobiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acinetobacter schindleri

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: uncultured bacterium


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: phycosphere of toxic marne Dinoflagellate

ncbi_organism_name: bacterium

ncbi_submitter: Zhejiang Ocean University


ncbi_submitter: EMG


ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The Maharaja Sayajirao University of Baroda


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: [Clostridium] leptum


ncbi_organism_name: uncultured Roseovarius sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Eubacteriales bacterium


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: China: Longli Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Lysinibacillus sphaericus

ncbi_submitter: Swedish University of Agricultural Sciences


ncbi_organism_name: Paenibacillus sp. NPDC057886

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Psychrobacter sp. 219-2-C

ncbi_submitter: Texas A&M University, School of Vet Med


ncbi_organism_name: Xanthomonas oryzae pv. oryzicola

ncbi_submitter: Cornell University


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Candidatus Endoriftia persephonae


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Streptomyces sp. NBC_01613

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: Central University of Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_assembly_name: freshwater MAG --- LinL4_bin-0667

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Granulibacter bethesdensis CGDNIH4

ncbi_submitter: Integrated Genomics


ncbi_assembly_name: freshwater MAG --- MJ130702B_bin-185


ncbi_organism_name: Sulfurimonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_country: Malaysia: Selangor

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Monash University


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_submitter: Massey University


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Christian Medical College


ncbi_country: Czech Republic

ncbi_isolate: Bordetella pertussis

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Bordetella pertussis

ncbi_strain_identifiers: VS366;Bordetella pertussis

ncbi_submitter: Institute of Microbiology of the Czech Academy of Sciences, v.v.i.


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Lithuania: Vilnius

ncbi_organism_name: Limosilactobacillus balticus

ncbi_submitter: University of Alberta


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: infection

ncbi_submitter: Washington University


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Tidjanibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Rakuno Gakuen University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Shanghai Ocean University


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: mine service water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Northwestern University


ncbi_country: Denmark

ncbi_organism_name: Enterococcus faecium EnGen0177

ncbi_strain_identifiers: VRE 108

ncbi_submitter: Broad Institute


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B;x__Salmonella enterica subsp. enterica serovar Java


ncbi_assembly_name: freshwater MAG --- LJ-3-9m_bin-476

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Sedimentibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp.


ncbi_organism_name: Streptomyces rubiginosohelvolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_country: Taiwan

ncbi_isolation_source: pus

ncbi_submitter: Centers for Disease Control, R.O.C (Taiwan)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: Finland

ncbi_isolation_source: Dental plaque from an adult with gingivitis

ncbi_submitter: Bumgarner laboratory, Department of Microbiology, University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans;x__Aggregatibacter actinomycetemcomitans serotype c str. AAS4A


ncbi_organism_name: Muribaculum intestinale


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Pakistan: Isb

ncbi_isolation_source: probiotic supplement

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: NIBGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_assembly_name: Salmonella enterica CVM N42458 v1.0

ncbi_country: USA: CO

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_isolate: host faecal sample

ncbi_strain_identifiers: 03;host faecal sample;YE56

ncbi_submitter: WTSI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;s__Yersinia enterocolitica;x__Yersinia enterocolitica (type O:9);x__Yersinia enterocolitica (type O:9) str. YE56/03


ncbi_organism_name: Parabacteroides gordonii


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: Viet Nam: Hanoi

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: USA: KS

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Liaocheng University


ncbi_country: USA: CA

ncbi_isolation_source: white peach

ncbi_organism_name: Listeria monocytogenes


ncbi_country: USA


ncbi_organism_name: Flammeovirgaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: France

ncbi_isolation_source: tissue

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CEBITEC


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Verrucomicrobiaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: China: China University of Geosciences Beijing

ncbi_isolation_source: sediment

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Brazil

ncbi_isolation_source: bulk soil from sugarcane field

ncbi_organism_name: Pseudomonas sp. B38(2017)

ncbi_submitter: University of Sao Paulo


ncbi_country: Republic of the Congo

ncbi_isolation_source: Human clinical sample

ncbi_organism_name: Yersinia pestis Antiqua

ncbi_strain_identifiers: Antiqua

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium AF66-18pH10TA

ncbi_submitter: BGI-Shenzhen


ncbi_country: Taiwan: Hsinchu City

ncbi_organism_name: Fructobacillus broussonetiae

ncbi_submitter: Food Industry Research and Development Institute


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: China

ncbi_organism_name: Candidatus Phytoplasma asiaticum

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma asiaticum


ncbi_isolation_source: animal

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Mediterraneibacter sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Malaysia

ncbi_isolation_source: tapai

ncbi_organism_name: Weissella confusa

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_country: Russia

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Israel

ncbi_isolation_source: host tissue

ncbi_submitter: University of California Irvine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. 108402


ncbi_country: Thailand

ncbi_organism_name: Burkholderia thailandensis Phuket 4W-1

ncbi_strain_identifiers: Phuket 4W-1

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_country: USA: Massachusetts; Nahant; Canoe Beach

ncbi_isolation_source: agarose-alginate mix 40-100 m particle (artificial) late colonization

ncbi_organism_name: Reichenbachiella agariperforans

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: uncultured Ekhidna sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Alabama Birmingham


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: water column from Pozas Azules

ncbi_organism_name: Bacillus coahuilensis p1.1.43

ncbi_submitter: CINVESTAV-Irapuato


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Aliidongia sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Vicinamibacterales bacterium


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Breast milk

ncbi_organism_name: Galactobacillus timonensis

ncbi_submitter: URMITE


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_organism_name: Thauera phenylacetica B4P

ncbi_submitter: Norwegian University of Life Sciences


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: uncultured Candidatus Saccharimonas sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;x__environmental samples;s__uncultured Candidatus Saccharimonas sp.


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_country: China: Chenghai; Shantou; Guangdong

ncbi_isolation_source: frog farm sediment

ncbi_organism_name: Edwardsiella tarda

ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_organism_name: Caulobacteraceae bacterium


ncbi_organism_name: Atlantibacter hermannii


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_country: USA:New York City

ncbi_isolation_source: plastic

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of Queensland


ncbi_country: India: Manipal

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_organism_name: Porphyromonas crevioricanis JCM 15906

ncbi_submitter: Microbe Division/Japan Collection of Microorganisms, RIKEN BioResource Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas crevioricanis;x__Porphyromonas crevioricanis JCM 15906


ncbi_isolation_source: pig gut metagenome


ncbi_country: China: Qinyuan City; Guangdong Province

ncbi_organism_name: Escherichia coli

ncbi_submitter: SouthChina Agriculture University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: Universidade de Sao Paulo


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Spirochaetia bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Mucispirillum schaedleri


ncbi_country: India: Khirganga hotspring; Himachal Pradesh; Northern Hiamayas

ncbi_isolation_source: hotspring water

ncbi_organism_name: Cyanobacteria bacterium KgW148

ncbi_submitter: University of Delhi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium KgW148


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: OHSU


ncbi_country: South Africa

ncbi_isolation_source: Fresh produce

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: UPMP 796

ncbi_submitter: University of Pretoria


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Braganca


ncbi_country: Greece: Larimna

ncbi_isolation_source: Rotifer live feed

ncbi_organism_name: Vibrio sp. LaRot3

ncbi_submitter: Agricultural University of Athens


ncbi_organism_name: Candidatus Babeliales bacterium

ncbi_submitter: University of Galway

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;x__unclassified Candidatus Babeliales;s__Candidatus Babeliales bacterium


ncbi_organism_name: uncultured Thiotrichales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: France

ncbi_isolation_source: grape must

ncbi_organism_name: Lentilactobacillus hilgardii

ncbi_strain_identifiers: CIRM-BIA 2123

ncbi_submitter: Brigham Young University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; 10% subassembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFCSPLOWO2_12_40_14


ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St Louis


ncbi_country: India

ncbi_isolation_source: Imported frozen meat

ncbi_submitter: Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Shijiazhuang

ncbi_organism_name: Pauljensenia hongkongensis

ncbi_submitter: HebeiProvincialInstitute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-3275

ncbi_organism_name: Candidatus Doudnabacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;x__unclassified Candidatus Doudnabacteria;s__Candidatus Doudnabacteria bacterium


ncbi_country: Argentina: San Carlos Sur

ncbi_isolation_source: first pond of the CYC serial dairy industry stabilization pond system

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: INTA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Porphyromonadaceae bacterium UBA7167


ncbi_country: China


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Tsinghua University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Companilactobacillus paralimentarius

ncbi_strain_identifiers: IMDO BBRM18

ncbi_submitter: VRIJE UNIVERSITEIT BRUSSEL


ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Xanthomonas euvesicatoria pv. euvesicatoria

ncbi_submitter: University of Florida


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: BGI-Shenzhen


ncbi_country: Sweden

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis BTB11-192

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Marinobacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: EMG


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Tissue

ncbi_submitter: University of Pittsburgh


ncbi_country: China: Zhejiang

ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Wolbachia endosymbiont of Drosophila biauraria

ncbi_submitter: Insect control lab, National Agriculture and Food Research Organization


ncbi_organism_name: Mediterraneibacter gnavus


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-355-L02

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Ohio

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_organism_name: Pontibacter saemangeumensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Emilia Romagna

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: University of Bologna


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_country: Canada: Manitoba

ncbi_submitter: University of Toronto


ncbi_country: Viet Nam: Phu An; Thanh Da; Phuc Tho

ncbi_isolation_source: soil from maize field

ncbi_organism_name: Bacillus cereus

ncbi_submitter: ENDOBICA


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: National Health Research Institutes


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: Washington University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus CM05


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_assembly_name: IMG-taxon 2623620441 annotated assembly

ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: BGSC 3A28

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_assembly_name: Rumen uncultured genome RUG13037

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Pseudoflavonifractor capillosus

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Senegalimassilia anaerobia

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Paenalcaligenes sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMG


ncbi_country: China: Longshenao Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolate: aBvan

ncbi_organism_name: Arsenophonus apicola

ncbi_strain_identifiers: aBvan

ncbi_submitter: University of Liverpool


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Kosakonia sp. YIM B13581

ncbi_submitter: Yunnan University


ncbi_organism_name: Hahella sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Flavipsychrobacter sp.

ncbi_submitter: Nanjing University


ncbi_organism_name: Candidatus Limiplasma merdipullorum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;s__Candidatus Limiplasma merdipullorum


ncbi_organism_name: Acutalibacter sp.

ncbi_submitter: University of British Columbia


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces misionensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptococcus oralis

ncbi_submitter: Mahidol University


ncbi_organism_name: Ruminiclostridium sp.

ncbi_submitter: Wilmar International Limited


ncbi_assembly_name: Raoultella ornithinolytica SAAS08

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Shanghai Academy of Agricultural Sciences


ncbi_organism_name: [Lactobacillus] rogosae


ncbi_organism_name: uncultured Gemmatimonadales bacterium


ncbi_organism_name: Pseudooceanicola nitratireducens

ncbi_submitter: Bivalve Hatchery Health Consortium


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: China: Jiuan Polymetallic Mine; Guizhou Province

ncbi_organism_name: Actinomycetes bacterium


ncbi_country: USA: Richmond; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Synergistales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: zhejiang

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Hospital


ncbi_country: Canada: British Columbia

ncbi_isolation_source: ANIMAL-chicken

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120686


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Universidad de los Andes


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 5-172-05_S3_C3

ncbi_submitter: IGS


ncbi_organism_name: Pantoea dispersa

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_assembly_name: IMG-taxon 2588254269 annotated assembly

ncbi_organism_name: Xaviernesmea oryzae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes ABC020052203

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Rhodococcus aetherivorans

ncbi_submitter: Nanjing Tech University


ncbi_organism_name: uncultured Acidobacteriota bacterium


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: Georgia

ncbi_isolation_source: Matsoni fermented milk product

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: University of Ljubljana


ncbi_organism_name: Escherichia coli

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: EMG


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Nitrosovibrio sp. Nv4

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: freshwater

ncbi_organism_name: Microcystis flos-aquae FACHB-1344

ncbi_submitter: South China Normal University


ncbi_country: USA: New York

ncbi_isolation_source: cystic fibrosis isolate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_assembly_name: freshwater MAG --- Loc090519-1m_bin-0643

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Universidad del Desarrollo


ncbi_organism_name: Pseudoalteromonas piscicida

ncbi_submitter: Ningbo University


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium


ncbi_country: USA: Michigan

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: Germany: Baiersbronn / Baden-Wuerttem; grassy area; close to T1

ncbi_organism_name: Streptomyces sp. NBC_00268

ncbi_submitter: Technical University of Denmark


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis KT-0040


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Treponema caballi

ncbi_submitter: Quadram Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: France

ncbi_organism_name: Enterobacter cloacae complex sp. P13B

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. P13B


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: UR oenologie


ncbi_assembly_name: freshwater MAG --- Ja2-D4_bin-0557

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Streptomyces sp. SID3212

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA: Pittsburgh; PA

ncbi_organism_name: Mycolicibacterium smegmatis

ncbi_submitter: University of Pittsburgh


ncbi_country: China: Dafeng

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_assembly_name: Rumen uncultured genome RUG11495

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA:Highgate Springs; VT

ncbi_organism_name: Planctomycetaceae bacterium UBA2092

ncbi_submitter: University of Queensland


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Italy

ncbi_isolation_source: salami paste production

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA: Kansas

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA/ARS


ncbi_organism_name: Limimaricola soesokkakensis

ncbi_submitter: Tang lab


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Pakistan

ncbi_isolation_source: nursing call button in hospital intensive care unit

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Clostridium fessum

ncbi_submitter: BGI-Shenzhen


ncbi_country: Malaysia

ncbi_isolation_source: closed biodigester

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;s__Candidatus Falkowbacteria bacterium UBA1359


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Turkey

ncbi_isolation_source: WWTP

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_isolation_source: aspirate

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: CF patient

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: LM-UGent


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: Medicine / Division of Infectious Diseases, University of North Carolina


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella histicola

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: soil

ncbi_organism_name: Microbacterium arabinogalactanolyticum

ncbi_submitter: Laboratory of applied carbohydrate chemistry, Department of food science and biotechnology, Faculty of agriculture, Kagoshima university


ncbi_country: Greece: Santorini; Kolumbo

ncbi_isolation_source: submarine volcano

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hellenic Centre for Marine Research (HCMR)


ncbi_country: Portugal: Lisboa

ncbi_isolation_source: Intraabdominal infection

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Heihe; Heilongjiang

ncbi_organism_name: Bradyrhizobium ottawaense

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of central Florida


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Lysinibacillus sp. K60

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Hong Kong

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: skin tissue

ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: human clinical sample

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Texas A&M University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Ningbo University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: NIVIP


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: IMG-taxon 2634166282 annotated assembly

ncbi_organism_name: Pseudarthrobacter equi

ncbi_strain_identifiers: IMMIB L-1606

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Japan: Ibaraki 305-0074

ncbi_isolation_source: Japan collection of microorganisms

ncbi_organism_name: Neptunomonas concharum

ncbi_submitter: Shenzhen University


ncbi_country: Bangladesh

ncbi_organism_name: Shigella flexneri VA-6

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Turkey feces

ncbi_organism_name: Ligilactobacillus agilis

ncbi_submitter: NODAI Genome Research Center, Tokyo University of Agriculture


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Merdivicinus intestinavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Merdivicinus;s__Candidatus Merdivicinus intestinavium


ncbi_organism_name: Lachnospiraceae bacterium 10-1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Vellozia epidendroides specimens

ncbi_organism_name: Aquitalea sp.

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_country: USA: Minnesota

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Minnesota


ncbi_country: Japan:Shiga; Lake Biwa

ncbi_isolation_source: Lake freshwater

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Center for Ecological Research, Kyoto University


ncbi_country: Russia: Elista

ncbi_isolation_source: river water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Russian Research Anti-plague Institute "Microbe"


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Mitsuokella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: India

ncbi_isolation_source: surface sterilized rice seed

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: National Institute of Plant Genome Research


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond H1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Montreal


ncbi_country: Spain

ncbi_isolation_source: Bean seeds

ncbi_organism_name: Clavibacter phaseoli

ncbi_strain_identifiers: LPPA 982

ncbi_submitter: University of Hawaii


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Biomin Research Center


ncbi_isolation_source: coastal sediment

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Italy: Bresso; MI

ncbi_isolation_source: water

ncbi_organism_name: Legionella pneumophila serogroup 1

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Peptoniphilaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Beijing

ncbi_isolation_source: patient with infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: CEBITEC


ncbi_country: Taiwan: Taichung

ncbi_submitter: Centers for Disease Control, Taiwan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National University of Singapore (NUS)


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus OCMM6057

ncbi_submitter: Broad Institute


ncbi_country: France

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_country: China: Nanjing

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Cambridge; MA; MIT

ncbi_organism_name: Escherichia coli

ncbi_submitter: MIT


ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Parabacteroides distasonis


ncbi_isolation_source: BLOOD


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_assembly_name: freshwater MAG --- AlinenSedimentsD0_bin-1473

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Argentina: Victoria

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Nautiliaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Mordavella massiliensis

ncbi_submitter: Veterinary Research Institute


ncbi_country: China: Shandong

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Brucella daejeonensis

ncbi_submitter: Animal and Plant Health Agency


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Prevotellaceae bacterium


ncbi_country: China

ncbi_isolation_source: pickle

ncbi_organism_name: Lacticaseibacillus daqingensis

ncbi_submitter: Northeast Agricultural University


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: FSBSI Institute of Experimental medicine


ncbi_organism_name: Exercitatus varius

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: lung

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Phocaeicola dorei


ncbi_country: USA: Washington DC

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: WRAIR


ncbi_country: Brazil:Botucatu; SP

ncbi_isolation_source: Ileum mucosa biopsy

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Biosciences of the State University of Sao Paulo (UNESP/IBB)


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: Wastewater effluent sample

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Singapore

ncbi_isolation_source: not known

ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Paracoccus sp. (in: a-proteobacteria)

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. (in: a-proteobacteria)


ncbi_country: Finland: Helsinki

ncbi_organism_name: Staphylococcus simulans

ncbi_submitter: Helsinki University


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens


ncbi_country: China: Kunming

ncbi_isolation_source: lake water

ncbi_organism_name: Simplicispira lacusdiani

ncbi_submitter: Institute of Medicinal Biotechnology


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: bacterium

ncbi_submitter: Georgia Tech


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sultan Qaboos University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_organism_name: Marinobacter sp. GH_1

ncbi_submitter: Hubei University of Technology


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: KAUST


ncbi_organism_name: uncultured Aquabacterium sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__environmental samples;s__uncultured Aquabacterium sp.


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Flavobacterium sp. RNTU_13

ncbi_submitter: Hannam University


ncbi_organism_name: uncultured Rhizobium sp.


ncbi_organism_name: Kribbella sp. NPDC050469

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Gemmatimonadales bacterium


ncbi_organism_name: Moraxella bovoculi

ncbi_submitter: Southwest Minzu University


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: sheep gut metagenome


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Denmark: N. Rhine Westphalia

ncbi_isolation_source: Soil; Beetroot field

ncbi_organism_name: Acinetobacter vivianii

ncbi_strain_identifiers: NIPH 758

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: CHU de Bicetre


ncbi_isolation_source: Duck

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus macedonicus

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Texas

ncbi_isolation_source: Endocarditis

ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: The University of Texas at Dallas


ncbi_organism_name: Fusobacterium varium


ncbi_country: USA: Massachusetts; Nahant; Canoe Beach

ncbi_isolation_source: Coastal surface sea water

ncbi_organism_name: Marinobacter sp. F3R11

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Zurich


ncbi_country: USA: Mid-Florida

ncbi_isolation_source: plant

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: University of Florida MREC


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Campylobacter showae

ncbi_submitter: EMG