ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 400095 13


ncbi_assembly_level: Scaffold

ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni


ncbi_isolation_source: nasopharynx


ncbi_isolation_source: kidney

ncbi_organism_name: Leptospira interrogans serovar Copenhageni

ncbi_submitter: University of Agriculture in Krakow


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Antarctica: Mackay Glacier regions; Mount Seuss

ncbi_isolation_source: mineral soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


gtdb_representative: t

ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Parma


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella sp. SC29

ncbi_submitter: Sichuan University


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Sheffield


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Bifidobacterium sp.


ncbi_organism_name: Pseudomonas sp.


ncbi_submitter: Kansas State University


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: State Research Center for Applied Microbiology and Biotechnology


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_country: China: Jiangxi; Yongping

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: Qingdao Agricultural University


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Centre of Biotechnology of Sfax


ncbi_organism_name: uncultured Selenomonas sp.

ncbi_submitter: EMG


ncbi_country: Pakistan

ncbi_isolation_source: bedside rail in hospital intensive care unit

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: United Kingdom: Great Britain

ncbi_isolation_source: Sewage

ncbi_submitter: Laboratory for Foodnorne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Crossness;x__Salmonella enterica subsp. enterica serovar Crossness str. 1422-74


ncbi_organism_name: Pseudoalteromonas sp. A22

ncbi_submitter: Chinese Academy of Fishery Sciences


ncbi_country: Australia: SouthTurramurra

ncbi_isolation_source: plant tissue

ncbi_organism_name: Xanthomonas vesicatoria

ncbi_submitter: La Trobe University


ncbi_organism_name: Anaerococcus vaginalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: France: Calvados; Normandie

ncbi_isolation_source: milk

ncbi_organism_name: Brevibacterium sp. UCMA 11752

ncbi_submitter: Equipe MALIM Matrices ALImentaires et Microbiotes


ncbi_country: Italy: Bussolengo

ncbi_organism_name: Bifidobacterium callitrichidarum

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: TRI 5

ncbi_submitter: University of Bologna

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: Michigan

ncbi_isolation_source: Hospital hot water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Agroscope


ncbi_country: South Korea: Seoul

ncbi_isolation_source: sputum

ncbi_organism_name: Mycolicibacter senuensis

ncbi_submitter: University of Trento


ncbi_country: South Africa: Beatrix mine in Welkom district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Candidatus Microgenomatus sp.

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Microgenomatota;g__Candidatus Microgenomatus;x__unclassified Candidatus Microgenomatus;s__Candidatus Microgenomatus sp.


ncbi_isolation_source: Blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Erasmus University Medical Center


ncbi_country: China: Shenzhen

ncbi_isolation_source: abdominal fluid

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Shenzhen People's Hospital


ncbi_country: South Korea: Damyang

ncbi_isolation_source: blue berry

ncbi_organism_name: Acetobacter vaccinii

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Halovulum sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: Taibai Mountain

ncbi_isolation_source: Sinopodophyllum hexandrum

ncbi_organism_name: Propioniciclava sinopodophylli

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus sanguinis VMC66

ncbi_submitter: Baylor College of Medicine


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: UNIVERSIDAD DE ZARAGOZA


ncbi_organism_name: Comamonas aquatica NBRC 14918

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Iran: Gerd-Korf village; Lahijan City; Gilan Province

ncbi_isolation_source: Acidic soil

ncbi_organism_name: Streptomyces tendae

ncbi_strain_identifiers: UTMC 3329

ncbi_submitter: University of Tehran


ncbi_country: Estonia

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 3.0 m mixolimnion layer of meromictic lake

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Academia Sinica


ncbi_country: USA: Cranberry Lake; WA

ncbi_isolation_source: lake water

ncbi_organism_name: Anabaena sp. WA113

ncbi_submitter: Oregon State University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen people's hospital


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: food processing facility

ncbi_organism_name: Microbacteriaceae bacterium PS02294

ncbi_submitter: Penn State University


ncbi_assembly_name: freshwater MAG --- Loc090907-1m_bin-354

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mucispirillum sp.


ncbi_organism_name: Pyrinomonadaceae bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Wolfebacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wolfeibacteriota;x__unclassified Candidatus Wolfebacteria;s__Candidatus Wolfebacteria bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_assembly_level: Chromosome

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad Autonoma Metropolitana Unidad Xochimilco


ncbi_country: USA: MS

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus DAR3767

ncbi_submitter: Broad Institute


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium


ncbi_country: Canada: Parksville; British Columbia

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: Health Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN00325


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Frankfurt


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Mediterraneibacter glycyrrhizinilyticus

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Finland

ncbi_organism_name: Arcanobacterium phocae

ncbi_submitter: Helsinki University


ncbi_organism_name: Neisseria lactamica

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Geobacter sp. UBA4074

ncbi_submitter: University of Queensland


ncbi_country: China: Neijiang

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Yangzhou University


ncbi_organism_name: Helicobacter japonicus


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Clostridium perfringens


ncbi_organism_name: Aneurinibacillus aneurinilyticus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Portugal: Ermida

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. UME83

ncbi_submitter: University of Minho


ncbi_country: China: Suzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Suzhou Hospital of Traditional Chinese Medicine


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: Laizhou

ncbi_isolation_source: Outpatient Department

ncbi_organism_name: Shewanella algae

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: uncultured Lentisphaerales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: uncultured Staphylococcus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: Silla University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Bovine Faeces

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: CSIR-Indian Institute of Toxicology Research


ncbi_country: China

ncbi_isolation_source: diseased pig

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Hunan Agricultural University


ncbi_country: USA: MD

ncbi_isolation_source: Commercial dietary supplements

ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: USFDA


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: skin swab cheek

ncbi_organism_name: Corynebacterium pseudokroppenstedtii

ncbi_submitter: Aarhus University


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_country: Singapore

ncbi_isolation_source: not known

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Abiotrophia sp.

ncbi_submitter: EMG


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-301

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: bacterium

ncbi_strain_identifiers: new MAG-301

ncbi_submitter: Micoorganism


ncbi_country: Jersey

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bath


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Marinomonas sp.


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Nepal

ncbi_isolation_source: nose

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_organism_name: Agathobaculum butyriciproducens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: USA: NE

ncbi_isolation_source: porcine pig intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: The First Hospital of Jilin University


ncbi_country: Japan

ncbi_isolation_source: isolated from diarrheal patient

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University


ncbi_country: USA: NYC

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Quadram Institutte


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: food

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: China: Zhejiang; Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Zhejiang university


ncbi_country: Austria: Pichlinger See

ncbi_isolation_source: freshwater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Joint Microbiome Facility

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Thailand: Hat Yai City; Songkhla province

ncbi_isolation_source: environmental

ncbi_submitter: National University of Singapore and Genome Institute of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Singapore


ncbi_country: Comoros

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bath


ncbi_country: South Korea

ncbi_isolation_source: Retail raw chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Seoul National University


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Costa Rica: San Jose

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Universidad de Costa Rica


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA98

ncbi_submitter: Broad Institute


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Terada and Riya Laboratory, Chemical Engineering, Depertment of Technology, Tokyo University of Agriculture and Technology


ncbi_organism_name: Mycolicibacterium litorale

ncbi_submitter: Egerton Dairy Dept


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 16ft depth

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__candidate division Zixibacteria bacterium RBG_16_53_22


ncbi_country: USA

ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: University of Aberdeen


ncbi_country: Italy

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli C418_89

ncbi_submitter: IGS


ncbi_country: Ireland: Cork

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University College Cork


ncbi_submitter: DTU Bioinformatics


ncbi_isolation_source: Diagnostics

ncbi_organism_name: Auritidibacter ignavus

ncbi_submitter: URMITE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Lincoln County; Oregon

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: USA: VA

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: New Jersey

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Columbia University Mailman School of Public Health


ncbi_country: France

ncbi_organism_name: Staphylococcus pettenkoferi

ncbi_submitter: INSERM U1047


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Bacillus paralicheniformis


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Vibrio gangliei

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Allen Lab


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University hospital Lubeck


ncbi_isolation_source: Permafrost

ncbi_organism_name: Brevundimonas aurantiaca

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: IFSC USP


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: Clinical; respiratory sample

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_organism_name: Escherichia coli C654_09

ncbi_submitter: IGS


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: Roseburia intestinalis


ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Dialister invisus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: University of Sao Paulo


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_country: China: Panjin

ncbi_isolation_source: water-oil sample from prodcution well

ncbi_organism_name: Tepidiphilus olei

ncbi_submitter: China Agricultural University


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Hylemonella sp.


ncbi_isolation_source: blood

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: microbes were collected at JL-Dive96-S01

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences


ncbi_organism_name: Coprobacter secundus

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Slovakia

ncbi_isolation_source: hospital

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Comenius University in Bratislava, Faculty of Natural Sciences


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: dog

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Zhejiang

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: mastitis

ncbi_submitter: KOlimastIR


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_country: Brazil: Vitoria

ncbi_isolation_source: abdominal fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_assembly_name: IMG-taxon 2600255311 annotated assembly

ncbi_organism_name: Kosakonia radicincitans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Arhodomonas sp. AD133

ncbi_submitter: Anhui Normal University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Ares Genetics GmbH


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland

ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: ETH Zurich


ncbi_organism_name: Candidatus Limivicinus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limivicinus;x__unclassified Candidatus Limivicinus;s__Candidatus Limivicinus sp.


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Micromonosporaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Hunan

ncbi_organism_name: Pseudomonas sp. 13159349

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Moraxellaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Turkey

ncbi_submitter: Republic of Turkey, Ministry of Health Directorate General Public Health


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Dekas Lab, Stanford University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Rural Development Administration


ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Medicine Siriraj Hospital, Mahidol University


ncbi_organism_name: Rhizobium pisi

ncbi_submitter: North Carolina State University


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces angustmyceticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Blautia producta

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudanabaena sp.


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Myxococcota bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Peterkaempfera podocarpi

ncbi_strain_identifiers: SMS 1(5)a

ncbi_submitter: National Research and Innovation Agency


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Maryland School of Medicine, Institute for Genome Sciences


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Prochlorococcaceae cyanobacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Qingdao

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: Ocean University of China


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: USA

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: University of Michigan Medical School


ncbi_organism_name: Campylobacter molothri

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Altererythrobacter sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University of Copenhagen


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Vicingaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: China: Guangdong

ncbi_isolation_source: fresh flowers

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Klebsiella oxytoca


ncbi_country: USA: Alachua; FL

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_country: USA: CO

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: urinogenital fluid

ncbi_organism_name: Neisseria gonorrhoeae MU_NG8

ncbi_submitter: Read Laboratory, Emory University


ncbi_country: USA: National Animal Disease Center at Ames; Iowa

ncbi_organism_name: Oxalobacter formigenes

ncbi_submitter: UNIVERSITY OF FLORIDA


ncbi_country: Australia

ncbi_organism_name: Burkholderia pseudomallei MSHR2543

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_organism_name: uncultured Thiotrichaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Veillonellales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: urine

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_country: Canada:Terrace; Lakelse Hot Spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Thermoflavifilum sp.

ncbi_submitter: University of British Columbia


ncbi_organism_name: Kocuria rhizophila

ncbi_submitter: Nord University


ncbi_organism_name: uncultured Sneathiella sp.


ncbi_country: Tunisia

ncbi_isolation_source: seafood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ANSES


ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Hafniaceae;g__Edwardsiella;s__Edwardsiella hoshinae;x__Edwardsiella hoshinae NBRC 105699 = ATCC 33379


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: sewage

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: UNIVERSITY MEDICAL CENTER UTRECHT


ncbi_organism_name: Candidatus Eremiobacteraceae bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Candidatus Eremiobacterales;f__Candidatus Eremiobacteraceae;x__unclassified Candidatus Eremiobacteraceae;s__Candidatus Eremiobacteraceae bacterium


ncbi_organism_name: Pseudomonas sp. RA_15y_Pfl1_P11

ncbi_submitter: groningen institute for evolutionary life sciences, university of groningen


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_country: Norway

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: St. Olav39

ncbi_submitter: Norwegian University of Science and Technology


ncbi_isolation_source: Diarrheal patient

ncbi_submitter: University of Maryland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UNIVERSITY OF HELSINKI


ncbi_country: China:Changsha city; Hunan

ncbi_isolation_source: plant

ncbi_organism_name: Streptomyces broussonetiae

ncbi_submitter: Central South University of Forestry and Technology


ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: OHSU


ncbi_country: USA: North Carolina

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae CHS 46

ncbi_strain_identifiers: CHS 46

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae CHS 46


ncbi_organism_name: Leclercia adecarboxylata


ncbi_organism_name: Desmospora sp. 8437

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: State University of Londrina


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: University of Gothenburg


ncbi_assembly_name: Salmonella enterica CVM N51303 v1.0

ncbi_country: USA: NY

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_isolation_source: feces

ncbi_organism_name: Rodentibacter pneumotropicus


ncbi_organism_name: Streptomyces griseoluteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Germany

ncbi_isolation_source: ear swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Swansea University


ncbi_country: Mexico

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_strain_identifiers: Tice

ncbi_submitter: KAUST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis;x__Mycobacterium tuberculosis variant bovis BCG


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_country: Germany: Hallbergmoos

ncbi_organism_name: Bombella pollinis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Lacrimispora sp. 38-1

ncbi_submitter: Instituto de Investigaciones Farmaco Bioquimicas


ncbi_country: New Zealand: Taranaki

ncbi_organism_name: Escherichia coli

ncbi_submitter: Massey University


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: microbes were collected at JL-Dive96-S01

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Psychrobacter sp JCM18903

ncbi_isolate: Psychrobacter sp. JCM18903

ncbi_isolation_source: porpoise

ncbi_organism_name: Psychrobacter sp. JCM 18903

ncbi_strain_identifiers: Psychrobacter sp. JCM18903

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: USA: Massachusetts

ncbi_isolation_source: dental plaque

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Marine Biological Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Australia: Brisbane

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: The University of Queensland


ncbi_assembly_name: Rumen uncultured genome RUG004

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Canada: Oldman River; Alberta

ncbi_isolation_source: water

ncbi_organism_name: Aliarcobacter skirrowii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Portugal: Lisboa

ncbi_isolation_source: Urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: Oregon State University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_country: Canada

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: USA

ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Malikia sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: University of Queensland


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-4315

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Mycobacteriaceae bacterium

ncbi_submitter: BILS


ncbi_country: Australia: Melbourne

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_assembly_name: freshwater MAG --- Loc080925-4-5m_bin-0436

ncbi_organism_name: uncultured Methylocystaceae bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: United Kingdom: Isle of May

ncbi_isolation_source: Halichoerus grypus

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Edinburgh


ncbi_assembly_name: IMG-taxon 2690315653 annotated assembly

ncbi_organism_name: Chitinophaga sp. YR573

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Roseburia intestinalis


ncbi_country: Brazil: Belo Horizonte

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Massachusetts Eye and Ear Infirmary/Harvard Medical School


ncbi_organism_name: Clostridia bacterium


ncbi_isolation_source: colon

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: University of Alberta


ncbi_organism_name: uncultured Leptospirales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Singapore

ncbi_isolate: MBR 210

ncbi_isolation_source: co-culture originated from a tropical freshwater lake

ncbi_organism_name: Nostoc sp. MBR 210

ncbi_strain_identifiers: MBR 210

ncbi_submitter: Singapore-MIT Alliance for Research and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nostocaceae;g__Nostoc;x__unclassified Nostoc;s__Nostoc sp. MBR 210


ncbi_organism_name: Streptomyces virginiae

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: [Kitasatospora] papulosa

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Goethe University Frankfurt


ncbi_organism_name: Streptomyces sp. CA-243310

ncbi_submitter: Technical University of Denmark


ncbi_submitter: EMG


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Streptomyces subrutilus


ncbi_isolation_source: Human

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Medicines Directorate


ncbi_organism_name: Comamonas thiooxydans

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: Oregon State University


ncbi_organism_name: Marichromatium sp. PS1

ncbi_submitter: Department of Biological Sciences, Tokyo Metropolitan University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Actinospica acidiphila

ncbi_submitter: Drexel University College of Medicine


ncbi_organism_name: Candidatus Cloacimonas sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;x__unclassified Candidatus Cloacimonas;s__Candidatus Cloacimonas sp.


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Dehalococcoidia bacterium UBA7832

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: host s whole body

ncbi_submitter: Centre de Biologie pour la Gestion des Populations (CBGP - UMR1062)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Erwiniaceae;g__Buchnera;s__Buchnera aphidicola;x__Buchnera aphidicola (Cinara cf. splendens/pseudotsugae 3390)


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Italy: Cesena

ncbi_isolation_source: Respiratory sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Genoa


ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088


ncbi_assembly_name: IMG-taxon 2690315622 annotated assembly

ncbi_organism_name: Streptomyces sp. 1222.5

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_country: Italy: Muggia (TS)

ncbi_isolation_source: intestine content

ncbi_organism_name: Clostridium botulinum C/D

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_assembly_name: IMG-taxon 2675903163 annotated assembly

ncbi_organism_name: Desulfomicrobium norvegicum


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: trach asp

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Washington University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Laos

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_country: Russia: Moscow region

ncbi_isolation_source: feces

ncbi_submitter: SRCAMB


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_assembly_name: freshwater MAG --- Loc081215-5m_bin-1125

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Microbacteriaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Bronchoalveolar Lavage

ncbi_organism_name: Acinetobacter baumannii TG22204

ncbi_submitter: Translational Genomics Research Institute


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_country: Australia

ncbi_isolation_source: Casey Hospital

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Monash University


ncbi_country: Atlantic Ocean:Mid Cayman Rise

ncbi_isolation_source: Beebe hydrothermal vent plume at at depth of 4900m

ncbi_organism_name: Sulfitobacter sp. UBA1132

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom: Somerset

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Politechnika Lodzka


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Planctomycetales bacterium


ncbi_organism_name: Pseudomonas sp. S2.OTC.A_B10

ncbi_submitter: AIT Austrian Institute of Technology


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: HUN-REN Bilogical Research Centre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Lawsonibacter sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: China: Jiangsu;Nanjing

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Mexico: Guadalajara

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_country: Slovenia: Marine Biology Station Piran

ncbi_organism_name: Nitrospira sp. bin75

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Legionellaceae bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Azamiibacteriota;s__Candidatus Azambacteria bacterium GW2011_GWC2_43_27


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: Passaging

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Micromonospora sp. NPDC023737

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: Bangladesh

ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: University of maryland


ncbi_country: Italy: Province of Bologna

ncbi_organism_name: Campylobacter vulpis

ncbi_submitter: C. vulpis


ncbi_country: USA: Maine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Maine at Presque Isle


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: California Department of Public Health


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella sp. WP7-S18-CRE-02

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Streptomyces luteogriseus


ncbi_organism_name: Aeromonas rivipollensis

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: uncultured Myxococcaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: caecum

ncbi_organism_name: Faecalibacterium sp. An77

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Campylobacter showae

ncbi_submitter: Univeristy of Aberdeen


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: University of East Anglia


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_assembly_name: Rumen uncultured genome RUG12095

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome


ncbi_country: Australia: Tasmania; Dairy Farm

ncbi_isolation_source: dairy equipment filters

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: University of Tasmania


ncbi_organism_name: Chryseobacterium culicis


ncbi_country: India: Himachal Pradesh; Dhundan; Arki

ncbi_isolation_source: nasal swab

ncbi_organism_name: Burkholderia mallei

ncbi_submitter: ICAR-National Research Centre on Equines


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Sphingobacterium sp. UBA6320

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Christian Medical College


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_organism_name: Thioalkalivibrio sp. ALM2T

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22114;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Kiloniellaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


gtdb_type_species_of_genus: t

ncbi_isolation_source: water

ncbi_organism_name: Adhaeretor mobilis

ncbi_submitter: Leibniz-Institute DSMZ German Collection of Microorganisms and Cell Cultures


ncbi_country: Thailand

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia thailandensis

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Owenweeksia hongkongensis DSM 17368

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Owenweeksiaceae;g__Owenweeksia;s__Owenweeksia hongkongensis;x__Owenweeksia hongkongensis DSM 17368


ncbi_organism_name: Amycolatopsis acidiphila

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Canada: Lacombe

ncbi_organism_name: Subdoligranulum variabile

ncbi_submitter: AAFC


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M011S1

ncbi_submitter: Universite de Montreal


ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_organism_name: Veillonellaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: Waterline

ncbi_submitter: University of Basel


ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_assembly_name: freshwater MAG --- MJ111018B_bin-0740

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: USA

ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Denmark: Dyrehaven

ncbi_isolation_source: soil of natural resort

ncbi_organism_name: Stenotrophomonas indicatrix

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: freshwater MAG --- Loclat_bin-05934

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad Austral de Chile


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Singapore General Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang Cancer Hospital


ncbi_organism_name: uncultured Parasporobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pantoea endophytica

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Penn State


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: Achromobacter genome submissions


ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Nocardia sp. 004

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Rhodomicrobium sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Candidatus Wallacebacter cryptica

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Wallacebacteriaceae;g__Candidatus Wallacebacter;s__Candidatus Wallacebacter cryptica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Wallacebacteriaceae;g__Candidatus Wallacebacter;s__Candidatus Wallacebacter cryptica


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_country: Australia: Brisbane

ncbi_isolation_source: bioreactor

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Queensland university of technology


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Candidatus Atribacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Gothenburg


ncbi_assembly_name: freshwater MAG --- Ki2-D2_bin-0112

ncbi_organism_name: uncultured Acidobacteriia bacterium

ncbi_submitter: BILS


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Calgary


ncbi_assembly_name: freshwater MAG --- MJ110927B_bin-697

ncbi_organism_name: uncultured delta proteobacterium


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Kiel University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: bacterium

ncbi_submitter: Northwestern University


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_submitter: URMC


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Prodigiosinella aquatilis

ncbi_submitter: CNRS UMR5240


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: USA: MD

ncbi_isolation_source: Chicken Wings

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: FDA


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Megasphaera elsdenii


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Dermacoccus nishinomiyaensis

ncbi_submitter: BGI


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR202 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__environmental samples;s__uncultured SAR202 cluster bacterium


ncbi_country: Haiti

ncbi_organism_name: Shigella flexneri 2a

ncbi_submitter: U.S. Food and Drug Administration


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Chile: Coihueco

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: INIA Rayentue

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_country: China

ncbi_isolation_source: chicken carcass

ncbi_organism_name: Salmonella enterica

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_country: Colombia: Norte de Santander

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Yonsei University


ncbi_assembly_name: IMG-taxon 2590828855 annotated assembly

ncbi_organism_name: Methylobacterium brachiatum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Macedonia: Strumitsa

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: Institut de Recherche pour le Developpement


ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Pseudomonas fulva


ncbi_organism_name: Terriglobus sp. RCC_193

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: plant

ncbi_organism_name: Bacillus subtilis PTS-394

ncbi_submitter: Jiangsu Institute of Plant Protection

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;x__Bacillus subtilis PTS-394


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Ningxia Medical University General Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: South Dakota; Sanford Underground Research Facility

ncbi_isolation_source: deeply circulating subsurface aquifer fluids

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;c__Candidatus Abyssobacteria;s__Candidatus Abyssobacteria bacterium SURF_5


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: Nigeria: Lagos

ncbi_isolation_source: Dye pond

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: University of Lagos


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Erythrobacteraceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Chalmers University of Technology


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Candidatus Aminicenantales bacterium

ncbi_submitter: Rutgers University

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;x__unclassified Candidatus Aminicenantales;s__Candidatus Aminicenantales bacterium


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Bosea sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Italy: Modena

ncbi_organism_name: Paraclostridium bifermentans

ncbi_submitter: University of Modena and Reggio Emilia


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University People's Hospital


ncbi_country: China: Luzhou

ncbi_isolation_source: no

ncbi_organism_name: Sphingobacterium sp. LZ9M9

ncbi_submitter: Southwest Medical University


ncbi_country: Japan

ncbi_isolation_source: feces; 1 single-cell amplified by MDA combined with human gut metagenome reads

ncbi_organism_name: Clostridium sp.

ncbi_submitter: bioBiome, Inc.


ncbi_country: Germany: Freising

ncbi_isolation_source: Caecal content

ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: WD

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: Mediterranean Sea

ncbi_organism_name: Pseudoalteromonas luteoviolacea CPMOR-2

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Leucobacter chromiiresistens


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National University of Singapore (NUS)


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Hyphomonas sp. UBA3201

ncbi_submitter: University of Queensland


ncbi_country: USA: Williamsport

ncbi_isolation_source: freshwater creek

ncbi_organism_name: Flavobacterium sp. AJR

ncbi_strain_identifiers: AJR

ncbi_submitter: Lycoming College


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: freshwater MAG --- Loc090519-7m_bin-0857

ncbi_isolation_source: lake water

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: BILS


ncbi_country: Russia: Perm Region; Kungur

ncbi_organism_name: Borreliella bavariensis

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_country: China: Jiangxi Province

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Shangrao Normal University


ncbi_country: Canada

ncbi_isolation_source: Albertan oil reservoir

ncbi_organism_name: Mesotoga sp. Brook.08.YT.4.2.5.1

ncbi_submitter: University of Alberta


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: JAMSTEC


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_organism_name: Thioclava sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Magnetospirillaceae bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Roseobacter sp. HKCCA0434

ncbi_submitter: Shenzhen Research Institute, The Chinese University of Hong Kong


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG10958

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: Rumen uncultured genome RUG678

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: surface seawater

ncbi_organism_name: Marinobacterium rhizophilum

ncbi_submitter: Ocean university of China


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D6_bin-099

ncbi_organism_name: uncultured Holophagaceae bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UNIVERSITY OF KWAZULU-NATAL


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_country: USA: Massachusetts; Boston

ncbi_isolation_source: gut flora of female BALB/c mice (Charles River Laboratories)

ncbi_organism_name: Escherichia coli

ncbi_submitter: Harvard University


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Laboratory

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_isolation_source: feces

ncbi_organism_name: Shigella sp. FC6514

ncbi_submitter: Ministry of Science and Technology of China


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: USA:Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 5-63 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Denmark: Ejby Moelle; Odense

ncbi_isolation_source: wastewater

ncbi_organism_name: Novosphingobium sp. UBA1948

ncbi_submitter: University of Queensland


ncbi_country: USA: Tucson; AZ

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Arizona


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Russia: Karabetova Gora near the city of Taman

ncbi_isolation_source: sediment and water from a salsa lake of a terrestrial mud volcano

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: Deakin University


ncbi_organism_name: Bacillus safensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured candidatus Porisulfidus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;x__Chromatiales incertae sedis;x__Candidatus Porisulfidus;x__environmental samples;s__uncultured candidatus Porisulfidus sp.


ncbi_organism_name: Pseudoduganella sp.

ncbi_submitter: Guangxi University


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: clinical material

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Ktedonobacteraceae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Guangzhou Institute of Respiratory Health, First Affiliated Hospital of Guangzhou Medical University


ncbi_country: Japan

ncbi_isolation_source: hospital sewage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shinshu University Graduate School of Medicine, Science and Technology


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 1 20 to 25cm

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: Bacillus sp. FSL W8-0629

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL W8-0629


ncbi_country: South Korea

ncbi_submitter: Gangwon province Institute of Health & Environment


ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: Zhejiang Ocean University


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: University of Queensland


ncbi_organism_name: Salmonella sp. NW1216

ncbi_submitter: Sichuan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Viet Nam: Tam Dao National Park

ncbi_isolation_source: termite gut

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Nigeria

ncbi_isolation_source: environmental

ncbi_organism_name: Enterobacter quasiroggenkampii

ncbi_submitter: Igbinedion University Okada Edo state Nigeria


ncbi_submitter: Centro de Astrobiologia


ncbi_country: China: Kunming

ncbi_isolation_source: gut

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: China Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: USA: Ohio

ncbi_isolation_source: blood

ncbi_submitter: JCVI


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_organism_name: Gluconobacter japonicus

ncbi_submitter: Teagasc


ncbi_organism_name: Faucicola osloensis

ncbi_submitter: University of Gothenburg - CCUG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Kocuria rhizophila


ncbi_organism_name: Duodenibacillus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F16107

ncbi_submitter: Broad Institute


ncbi_country: USA: Fort Sam Houston

ncbi_isolation_source: wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Miami University


ncbi_organism_name: uncultured Pseudomonas sp.


ncbi_country: United Kingdom: Aberystwyth

ncbi_isolation_source: throat

ncbi_organism_name: Fusobacterium necrophorum

ncbi_submitter: Cardiff Metropolitan University


ncbi_organism_name: Lysobacter sp. H21R4

ncbi_submitter: KyungHee University


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Acidovorax sp. GBBC 3332

ncbi_strain_identifiers: GBBC 3332

ncbi_submitter: Institute for Agricultural, Fisheries and Food Research (ILVO)


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_assembly_name: freshwater MAG --- AlinenSedimentsD2_bin-0520

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: China Agriculture University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Russia: Moscow region

ncbi_isolation_source: refinery soil

ncbi_organism_name: Gordonia sp. 1D

ncbi_submitter: IBPM RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. 1D


ncbi_country: Australia: Tasmania

ncbi_isolation_source: hind gut digesta

ncbi_organism_name: Aliivibrio finisterrensis

ncbi_submitter: University of Tasmania


ncbi_country: Pakistan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National University of Sciences & Technology


ncbi_country: Spain

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_submitter: Enteropathogen Resource Integration Center (ERIC)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. pestis;x__Yersinia pestis subsp. pestis bv. Orientalis;x__Yersinia pestis biovar Orientalis str. PEXU2


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Candidatus Thiodiazotropha sp. 6PLUC5

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Candidatus Thiodiazotropha;x__unclassified Candidatus Thiodiazotropha;s__Candidatus Thiodiazotropha sp. 6PLUC5


ncbi_country: Mexico: Tepoztlan; Morelos

ncbi_isolation_source: legume-root nodule

ncbi_organism_name: Rhizobium phaseoli

ncbi_submitter: Centro de Ciencias Genomicas UNAM


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Shandong University


ncbi_country: Peru:Ascope; Chicama; La Libertad; AA.HH.

ncbi_organism_name: Yersinia pestis PY-103

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater under a natural surface slick

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus


ncbi_country: China: Yunnan

ncbi_isolation_source: meat

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Eubacterium maltosivorans

ncbi_submitter: EMG


ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: MAMI


ncbi_country: China: Jiangsu

ncbi_isolation_source: cloaca

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Klebsiella sp. 131256

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Universtity Hospital Cologne


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Paraburkholderia sp. GAS33

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Escherichia coli O111:H8

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Pseudoalteromonas sp. Ld18

ncbi_submitter: Station Biologique de Roscoff


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Opitutaceae bacterium


ncbi_organism_name: uncultured Caulobacteraceae bacterium


ncbi_organism_name: Desulfohalobiaceae bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Lawsonibacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Vibrio harveyi

ncbi_strain_identifiers: Sernef

ncbi_submitter: Hellenic Centre for Marine Research


ncbi_organism_name: Nocardia sp. NPDC057668

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lactococcus formosensis subsp. formosensis

ncbi_submitter: The University of Hong Kong


ncbi_submitter: China Jiliang University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: First Affiliated Hospital of Nanchang University, Nanchang University, Nanchang


ncbi_organism_name: Aeromonas molluscorum

ncbi_submitter: Bursa Uludag University


ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: Drexel University College of Medicine


ncbi_organism_name: Robiginitalea biformata

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Carnobacteriaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_organism_name: Tenericutes bacterium ADurb.Bin140

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__unclassified Mycoplasmatota;s__Tenericutes bacterium ADurb.Bin140


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_assembly_name: freshwater MAG --- Loc090116-4m_bin-0796

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research