ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Candidatus Oscillibacter avistercoris


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: University College Cork


ncbi_assembly_level: Scaffold

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Planktothrix sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Halopseudomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA

ncbi_isolation_source: Gill tissue of a wood-boring mollusc Lyrodus pedicellatus; shipworm Bankia gouldi collected from the Newport River Estuary; Beaufort North Carolina

ncbi_organism_name: Teredinibacter turnerae T8602

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Weifang

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University College London (UCL)


ncbi_country: Australia

ncbi_organism_name: Escherichia coli

ncbi_submitter: The ithree institute


ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: United Kingdom: London

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Imperial College London


ncbi_organism_name: Shigella sp. FJ200801

ncbi_submitter: Fujian Medical University


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: University of Michigan


ncbi_assembly_level: Complete Genome

ncbi_country: Netherlands

ncbi_isolation_source: Mussels

ncbi_organism_name: Campylobacter lari

ncbi_submitter: USDA, ARS, WRRC


ncbi_assembly_level: Chromosome

ncbi_country: Brazil: Botucatu; Sao Paulo State

ncbi_isolation_source: urine

ncbi_submitter: Sao Paulo State University


ncbi_country: New Zealand

ncbi_submitter: Massey University


gtdb_representative: t

ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Italy

ncbi_isolation_source: milk

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Sulfopaludibacter sp. SbA3

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__Solibacteraceae;g__Candidatus Sulfopaludibacter;x__unclassified Candidatus Sulfopaludibacter;s__Candidatus Sulfopaludibacter sp. SbA3


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Thermoguttaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Argentina

ncbi_isolation_source: soil

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_country: USA: Maryland

ncbi_isolation_source: Heads

ncbi_organism_name: Pseudomonas sp. S75

ncbi_submitter: USDA-ARS-Beltsville Sustainable Perennial Crops Laboratory


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Manitoba


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: Bangladesh

ncbi_isolation_source: Mastitis milk

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Bangladesh Agricultural University


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Crocosphaera watsonii WH 0005

ncbi_submitter: UCSC


ncbi_country: Paraguay

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: Australia: Western Australia

ncbi_isolation_source: Intra-abdominal

ncbi_submitter: The University of Queensland


ncbi_submitter: Chongqing Medical University


ncbi_organism_name: Treponemataceae bacterium


ncbi_organism_name: Lactobacillus acetotolerans

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Akkermansia sp.

ncbi_submitter: INRA


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1704

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas sp. JUb52

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae;x__Klebsiella pneumoniae subsp. pneumoniae KpMDU1


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. CK199

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Nocardia salmonicida

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Peru

ncbi_isolation_source: patient

ncbi_organism_name: Vibrio cholerae C6706

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Danvile; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Taiwan: TaoYuan

ncbi_isolation_source: vaginal swabs

ncbi_organism_name: Streptococcus vaginalis

ncbi_refseq_category: reference genome

ncbi_submitter: Ming Chuan University

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Streptomyces sp. NPDC001812


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp. AM18-10

ncbi_submitter: BGI


ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Lethbridge


ncbi_country: USA: KS

ncbi_isolation_source: environment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_organism_name: Pantoea sp. BJ2

ncbi_submitter: Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA

ncbi_isolation_source: infection control

ncbi_submitter: JCVI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridium nitritogenes

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Portugal: Porto

ncbi_isolation_source: Intraabdominal infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Kenya: Kisumu

ncbi_isolation_source: skin soft tissue

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Kenya Medical Research Institute - United States Army Medical Research Directorate Kenya

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: CO

ncbi_organism_name: Bordetella holmesii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Peking Union Medical College Hospital


ncbi_isolate: SPRUCE 244

ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_strain_identifiers: SPRUCE 244

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Peru: Lima

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Blautia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_assembly_name: LM57179 assembly

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: China: Taizhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Dickeya solani

ncbi_submitter: Institute for integrative biology of the cell


ncbi_organism_name: Bosea sp. (in: a-proteobacteria)

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. (in: a-proteobacteria)


ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: University of Plovdiv


ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: United Kingdom: London

ncbi_isolation_source: Rectum

ncbi_submitter: Nottingham Trent University


ncbi_country: USA: Tennessee

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0277

ncbi_submitter: Broad Institute


ncbi_organism_name: Microbacterium aurum

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang university


ncbi_country: USA: Massachusetts

ncbi_isolation_source: coastal ocean near shore

ncbi_organism_name: Marinobacter nauticus

ncbi_submitter: University of Massachusetts Dartmouth


ncbi_country: Pakistan

ncbi_isolation_source: pus

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITY OF READING


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Roseibium sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Micromonospora sp. NPDC048986

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University of Waterloo


ncbi_assembly_name: Rumen uncultured genome RUG390

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Shandong

ncbi_isolation_source: bark

ncbi_organism_name: Pseudoclavibacter sp. CFCC 14310

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_country: Mexico

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: UNAM


ncbi_submitter: Carleton Univeristy


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: intraoperative swabs

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Heidelberg University Hospital


ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__environmental samples;s__uncultured Candidatus Izemoplasmatales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Salmonella enterica CVM 43760 v1.0

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Schaedlerella sp.


ncbi_country: USA: California

ncbi_submitter: USDA-ARS


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Caecum


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: China

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Palmer LTER


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Mucispirillum schaedleri


ncbi_isolation_source: meat

ncbi_organism_name: Listeria innocua

ncbi_submitter: PulseNet USA


ncbi_organism_name: Mycolicibacterium diernhoferi

ncbi_submitter: Research Institute of Tuberculosis


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Salinisphaerales bacterium

ncbi_submitter: European Bioinformatics Institute


gtdb_type_species_of_genus: t

ncbi_country: Germany

ncbi_isolation_source: soil

ncbi_organism_name: Herbinix hemicellulosilytica

ncbi_submitter: CEBITEC


ncbi_country: Germany: Braunschweig

ncbi_isolation_source: Fermented fish sauce

ncbi_organism_name: Staphylococcus carnosus

ncbi_submitter: Modernising Medical Microbiology

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Selenomonadales bacterium


ncbi_country: Peru: Lima

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: Ghana: Tamale

ncbi_isolation_source: Guinea fowl meat

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acidovorax sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: uncultured Akkermansia sp.


ncbi_isolation_source: laboratory

ncbi_organism_name: Priestia megaterium

ncbi_submitter: Deerland


ncbi_country: Laos

ncbi_isolation_source: chicken meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_country: China: Jiangsu

ncbi_isolation_source: feces

ncbi_submitter: Nanjing agticultural university


ncbi_organism_name: Roseateles sp.

ncbi_submitter: Guangxi University


ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Trunk River; Woods Hole; Massachusetts

ncbi_isolation_source: microbial mat material from brackish estuary

ncbi_organism_name: Cereibacter sphaeroides

ncbi_submitter: Department of Biology, Washington University in St. Louis


ncbi_country: Austria: Vienna

ncbi_isolation_source: labial angle of a patient with cheilitis angularis

ncbi_organism_name: Siccibacter turicensis

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Actinobacillus sp.

ncbi_submitter: EMG


ncbi_country: Japan: Okinawa

ncbi_isolation_source: damaged hard coral

ncbi_organism_name: Croceivirga thetidis

ncbi_submitter: Keimyung University


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_organism_name: Paraclostridium sordellii

ncbi_submitter: SC


ncbi_country: China: Xinjiang

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_submitter: EPFL


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC058686

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: China University of Geosciences(Beijing)


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Nizhny Novgorod scientific and research institute of epidemiology and microbiology name acad.I.N. Bl


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Universidad Complutense de Madrid


ncbi_isolate: AOP34_BR2_surf _bin _23

ncbi_organism_name: Microbacterium gubbeenense

ncbi_strain_identifiers: AOP34_BR2_surf _bin _23

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: uncultured Demequinaceae bacterium


ncbi_organism_name: Salmonella sp. 741265067_HSA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Tunturiibacter empetritectus

ncbi_submitter: Rutgers University


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Rhodomicrobiaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_isolate: AOP35_05H_surf _bin _2

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: AOP35_05H_surf _bin _2


ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: China National Research Institute of Food and Fermentation Industries Co., LTD


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: Center for Genome Regulation (CRG)


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: bacterium

ncbi_submitter: Inha University


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Stony Brook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: International Space Station

ncbi_isolation_source: PROTECT experiment; Tray 2; Comp 2; dark layer

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Centro de Astrobiologia


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Bangladesh: Mathbaria

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_country: USA: northwestern Lake Huron

ncbi_isolation_source: purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink holes collected from 2007 through 2012

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Kenya Medical Research Institute


ncbi_isolation_source: soil

ncbi_organism_name: Taibaiella koreensis


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Roseomonas sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: uncultured Phycisphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: United Kingdom

ncbi_strain_identifiers: BGSC 4Q1

ncbi_submitter: University of Bath

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar israelensis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ren Ji Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_isolation_source: unknown

ncbi_organism_name: Clostridioides difficile


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: Medicine / Division of Infectious Diseases, University of North Carolina


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Azambacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Azamiibacteriota;x__unclassified Candidatus Azambacteria;s__Candidatus Azambacteria bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Providencia hangzhouensis

ncbi_submitter: University of Oxford


ncbi_isolation_source: urban industrial factory reactor residue

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Fudan University


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_organism_name: Streptomyces shenzhenensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Muribaculum intestinale


ncbi_isolation_source: Sheep

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Hangzhou

ncbi_isolation_source: puncture fluid

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The National University of Malaysia (UKM)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: China:Hong Kong SAR

ncbi_isolation_source: partial-nitration anammox reactor sludge sample

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Butyribacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Zhejiang

ncbi_organism_name: Enterococcus faecium


ncbi_submitter: Medical Mycology Research Center


ncbi_country: China: East China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Umbilicus swab

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Mesotoga sp.


ncbi_country: Italy:Trentino Alto Adige; Trento Valsugana

ncbi_strain_identifiers: valsugana

ncbi_submitter: CRI-FEM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont of Drosophila suzukii;x__Wolbachia endosymbiont str. valsugana of Drosophila suzukii


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Lentihominibacter sp.


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus

ncbi_submitter: BGI


ncbi_country: Uganda

ncbi_organism_name: Mycolicibacterium vulneris

ncbi_submitter: JCVI


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_country: Nigeria

ncbi_isolation_source: backyard farm #9; cloacal swab #18

ncbi_submitter: Auburn University


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: Milk powder plant

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: University of Zurich


ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_organism_name: Pseudomonas sp. GP01-A14

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_country: USA: WA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Washington


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-WM

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Roseobacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: [Pseudopropionibacterium] massiliense

ncbi_submitter: EMG


ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Frontopsylla elatoides

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: Damariscotta River in front of the Bigelow Laboratory for Ocean Sciences

ncbi_isolation_source: four week timepoint of microcosm treated with crude oil after inoculation with natural surface seawater; biological replicate 1

ncbi_organism_name: Legionellaceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: addis ababa university


ncbi_country: China

ncbi_isolation_source: pickle

ncbi_organism_name: Companilactobacillus hulinensis

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: Belgium

ncbi_isolation_source: Pairi Daiza

ncbi_submitter: Faculty of Veterinary Medicine, Ghent University


ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: RIMG, Kochi University


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_country: Australia: Newcastle

ncbi_organism_name: Acetatifactor sp.

ncbi_submitter: University of Queensland


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Ktedonobacteraceae bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: Canada: New Brunswick;Saint John

ncbi_isolation_source: stool

ncbi_submitter: Food and Water Safety Consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: UCI 2

ncbi_submitter: USDA-ARS


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: household surface

ncbi_submitter: SC


ncbi_organism_name: Ilumatobacteraceae bacterium


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Leptotrichiaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Acinetobacter radioresistens


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: uncultured Chromatiaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Pleural fluid

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: United Kingdom

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mutans M21

ncbi_submitter: Cornell University


ncbi_country: Switzerland

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_isolation_source: not provided

ncbi_organism_name: Dialister pneumosintes

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: CDC Prevention Epicenter Program


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond E1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: University of Montreal


ncbi_isolation_source: BLOOD


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Treponema sp.


ncbi_country: Hong Kong

ncbi_isolation_source: sediment

ncbi_organism_name: Escherichia sp. E4702

ncbi_submitter: The Hong Kong University of Science and Technology


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Hydrogenophilales bacterium 12-64-13


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Oswaldo Cruz Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Pelagibacter sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__environmental samples;s__uncultured Candidatus Pelagibacter sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Veillonellaceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. MWU13-2100

ncbi_submitter: Midwestern University


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: Balneolales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Candidatus Epulonipiscium viviparus

ncbi_strain_identifiers: N.t. morphotype B

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: clinical

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: China

ncbi_isolation_source: food

ncbi_organism_name: Cronobacter dublinensis

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_organism_name: Brucella intermedia


ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Clostridium sp. CAG:58

ncbi_submitter: DTU


ncbi_organism_name: Tropheryma whipplei str. Dig15

ncbi_submitter: ebi


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 78 year old man who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_organism_name: Chromatiaceae bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: China: Shandong

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou University


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer sampled inside a natural surface slick

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Japan: Kanto

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_organism_name: uncultured Roseburia sp.


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridium sp.

ncbi_submitter: AAFC


ncbi_country: Germany: Goettingen

ncbi_isolation_source: tomato rhizosphere

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_organism_name: Veillonellaceae bacterium


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Thalassobaculaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: cecum

ncbi_organism_name: Helicobacter aurati

ncbi_submitter: MIT


ncbi_country: Taiwan

ncbi_isolation_source: Human

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Istanbul


ncbi_organism_name: Stenotrophomonas sepilia

ncbi_submitter: The University of the West Indies, Cave Hill Campus


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Roseburia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_submitter: University of Waterloo


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_organism_name: Kineococcus terrestris

ncbi_submitter: Sun Yat-sen University


ncbi_submitter: Zhengzhou University


ncbi_country: China: Nanjing; Jiangsu

ncbi_isolation_source: Mid-stage urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: USA: CT

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA/CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: Burkina Faso

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Leuconostoc falkenbergense

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: France: Marseille

ncbi_isolation_source: human clinical osteo-articular sample

ncbi_organism_name: Actinomyces timonensis DSM 23838

ncbi_submitter: URMITE


ncbi_organism_name: Kitasatospora sp. NPDC015120

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Panama

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis PanR0611

ncbi_submitter: Texas A&M University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Yunnan University


ncbi_submitter: WRAIR-Africa


ncbi_country: USA: MA

ncbi_isolation_source: blood

ncbi_submitter: FDA/CFSAN


ncbi_country: Gambia: Basse Santa Su

ncbi_isolation_source: feces

ncbi_submitter: University of Maryland School of Medicine


ncbi_submitter: Central Research Institute of Epidemiology


ncbi_submitter: University of Pretoria


ncbi_country: Canada: Rivire St-Jean; Gasp; Quebec

ncbi_isolation_source: Clams

ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: Health Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_assembly_name: Rumen uncultured genome RUG11205

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Detroit

ncbi_isolation_source: Dog lung

ncbi_organism_name: Bordetella bronchiseptica

ncbi_strain_identifiers: CCUG 219

ncbi_submitter: TAILORED-Treatment project


ncbi_organism_name: uncultured Bacteriovoracaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: MS

ncbi_isolation_source: Abdominal fluid

ncbi_organism_name: Staphylococcus aureus DAR3924

ncbi_submitter: Broad Institute


ncbi_organism_name: Limoniibacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Tang lab


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_country: India: Guwahati; Assam

ncbi_isolation_source: Fecal Swab

ncbi_organism_name: Salmonella enterica

ncbi_submitter: International Livestock Research Institute


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Maryland


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Winogradskyella sp.


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Curtissiibacteriota;s__Candidatus Curtissbacteria bacterium GW2011_GWA2_40_31


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: bioMerieux


ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Division of Infection Control and Prevention, Medical Mycology Research Center, Chiba University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: China

ncbi_isolation_source: fecal swab89

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Animal Disease Prevention and Food Safety Key Laboratory of Sichuan


ncbi_organism_name: Bacillus mycoides


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Veillonellaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases


ncbi_country: China: Shenzhen

ncbi_organism_name: Collinsella sp. AM20-15AC

ncbi_submitter: BGI


ncbi_country: USA: Wisconsin; near Picnic Point on the coast of Lake Mendota

ncbi_isolation_source: biofilm growing on a polymer composite week 18

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Univerisity of Wisconsin--Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: adult male urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Bangladesh

ncbi_isolation_source: Other body fluids

ncbi_organism_name: Escherichia coli

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Hungary

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Yale School of Public Health


ncbi_country: South Korea

ncbi_isolation_source: Doenjang(Soybean paste; Korea traditional fermented food)

ncbi_organism_name: Arthrobacter sp. KFRI-F3372

ncbi_submitter: KOREA FOOD RESEARCH INSTITUTE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: MACS Agharkar Research Institute, Pune (MS) India


ncbi_submitter: Somov Institute of Epidemiology and Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: Okayama University


ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: uncultured Geobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Stutzerimonas frequens

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Eshraghiella crossota


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Fusobacterium necrophorum subsp. funduliforme

ncbi_submitter: University Hospital Center and University of Lausanne


ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_strain_identifiers: DR 54-CIP

ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Blautia sp.


ncbi_organism_name: Yersinia sp. 2553 StPb PI

ncbi_strain_identifiers: 2553 StPb PI

ncbi_submitter: Saint-Petersburg Pasteur Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__unclassified Yersinia (in: enterobacteria);s__Yersinia sp. 2553 StPb PI


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Legionella sp. 28fT52

ncbi_submitter: University of Bologna


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-67

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_strain_identifiers: new MAG-67

ncbi_submitter: Micoorganism


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: Brazil: Blumenau


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Institute of the Sea (IUEM) - France


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: Stenotrophomonas sp. GZD-301

ncbi_submitter: Jilin Agricultural University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: Iowa State University


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Actinomycetota bacterium


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Sweden: Uppsala

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Uppsala University


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Morganella morganii

ncbi_submitter: University of Oxford


ncbi_isolation_source: surface-sterilized rice at the International Rice Research Institute

ncbi_organism_name: Xanthomonas sp. SHU 199

ncbi_strain_identifiers: SHU 199

ncbi_submitter: Colorado State University


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom: London

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Micrococcus luteus NCTC 2665

ncbi_strain_identifiers: NCTC 2665

ncbi_submitter: SC


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: soil metagenome

ncbi_organism_name: uncultured Bordetella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bacteroides sp. OF02-3LB

ncbi_submitter: BGI


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD9057

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Ideonella sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Mediterraneibacter sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Institute of the Sea (IUEM) - France

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: India: Kolkata

ncbi_isolation_source: clinical sample

ncbi_submitter: National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: NH; DHMC

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Dartmouth College


ncbi_country: USA: VA

ncbi_organism_name: Gordonia bronchialis

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: Livermore; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Synergistales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_assembly_name: freshwater MAG --- KT6_bin-107

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Orissa

ncbi_isolation_source: sediment from sulfur spring

ncbi_organism_name: Chelatococcus sambhunathii

ncbi_submitter: Joint Genome Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG12811

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University of Auckland


ncbi_country: USA

ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Rubrobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Stony Brook University


ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_isolation_source: Strip loin

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Meat Animal Research Center-ARS


ncbi_country: Singapore

ncbi_isolation_source: not known

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_country: USA: WI; Brown

ncbi_organism_name: Xanthomonas hortorum pv. pelargonii

ncbi_submitter: Ohio State University


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Hyphococcus sp.

ncbi_submitter: The University of Melbourne


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Marinilabiliaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: USA: Metropolitan Atlanta

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae SPAR27

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: Manhattan; Kansas

ncbi_isolation_source: gastrointestinal tract of biting midge larvae

ncbi_organism_name: Culicoidibacter larvae

ncbi_submitter: Kansas State University


ncbi_country: Switzerland

ncbi_isolation_source: Superficial Swab

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Basel


ncbi_country: China: Sichuan

ncbi_isolation_source: sputum

ncbi_submitter: Southwest Medical University


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-1408

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_country: Brazil: Minas Gerais

ncbi_organism_name: Pseudomonas coronafaciens pv. garcae

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. garcae


ncbi_country: Netherlands: Groningen

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: unverisity medical center groningen


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Winogradskyella sp.

ncbi_submitter: Monash University


ncbi_country: Norway: Viken

ncbi_isolation_source: Milk filter

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: Italy: Florence

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Third Institute of Oceanography(TIO) of the Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_submitter: Oregon State University


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Arthrobacter globiformis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Serbia

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of Medicine University of Belgrade


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: body fluid

ncbi_submitter: Prince of Songkla University


ncbi_country: Australia

ncbi_isolation_source: Tissue

ncbi_submitter: UNIVERSITY OF MELBOURNE


ncbi_country: USA

ncbi_isolation_source: plaque-purified isolate from stock culture

ncbi_organism_name: Chlamydia muridarum str. Nigg

ncbi_submitter: University of North Carolina at Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;x__Chlamydia/Chlamydophila group;g__Chlamydia;s__Chlamydia muridarum;x__Chlamydia muridarum str. Nigg


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: Malaysia: Johor

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Corynebacterium striatum ATCC 6940

ncbi_strain_identifiers: ATCC 6940

ncbi_submitter: Baylor College of Medicine


ncbi_country: Hong Kong

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: Deparment of Primary Industries NSW

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_isolation_source: homo

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_organism_name: Thauera aromatica

ncbi_strain_identifiers: SP

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: Hungary

ncbi_isolation_source: phallus

ncbi_organism_name: Mycoplasma anserisalpingitidis

ncbi_submitter: Centre for Agricultural Research, Hungarian Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: USA: VA

ncbi_isolation_source: oyster

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Xylella fastidiosa subsp. sandyi Ann-1

ncbi_submitter: University of California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xylella;s__Xylella fastidiosa;sb__Xylella fastidiosa subsp. sandyi;x__Xylella fastidiosa subsp. sandyi Ann-1


ncbi_country: USA: Oakland County; MI

ncbi_isolation_source: Kent Lake

ncbi_organism_name: Microcystis aeruginosa K13-07

ncbi_submitter: University of Michigan


ncbi_country: China: Ningbo

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ningbo First Hospital


ncbi_isolation_source: bodily fluid

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_isolate: SPRUCE 384

ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 384

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Marinilabiliaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Flammeovirgaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Clostridioides difficile P61

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Sulfobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;x__unclassified Sulfobacillus;s__Sulfobacillus sp.


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: University of Oklahoma


ncbi_organism_name: Streptomyces baarnensis

ncbi_submitter: Moscow State University


ncbi_country: China: Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_submitter: SC


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Tenacibaculum dicentrarchi

ncbi_submitter: Universidad Bernardo OHiggins


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Henan

ncbi_isolation_source: sputum

ncbi_organism_name: Nocardia farcinica

ncbi_submitter: Chinese PLA Center for Disease Control and Prevention


ncbi_country: USA:Las Vegas

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae


ncbi_isolation_source: soil

ncbi_organism_name: Agrobacterium radiobacter

ncbi_strain_identifiers: NCPPB 3001

ncbi_submitter: Monash University Malaysia


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Brucella melitensis bv. 1 str. M5

ncbi_submitter: Microbial Genome Research Center, CAS Key laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella melitensis;x__Brucella melitensis bv. 1;x__Brucella melitensis bv. 1 str. M5


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Venezuela: Caracas

ncbi_organism_name: Streptomyces venezuelae ATCC 10712

ncbi_submitter: Korea Advanced Institute of Science and Technology(KAIST)


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Stenotrophomonas rhizophila

ncbi_submitter: INRA


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: CIRAD


ncbi_isolation_source: seawater

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: human gut

ncbi_organism_name: Ruminococcus bromii


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Texas

ncbi_organism_name: Brevundimonas bullata

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Agathobacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Finland

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: University of Helsinki


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_isolation_source: blood

ncbi_organism_name: Bartonella quintana JK 12

ncbi_strain_identifiers: JK 12

ncbi_submitter: Broad Institute


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: cold seep

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Limosilactobacillus gorillae

ncbi_submitter: Animal Science, Graduate School of Life and Environmental Sciences, Kyoto Prefectural University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Ningxia Medical University General Hospital


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: uncultured Barnesiella sp.


ncbi_organism_name: Actinobacillus porcitonsillarum


ncbi_country: India

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M991


ncbi_country: Canada: Alberta

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli


ncbi_country: USA: Point Barrow; Alaska

ncbi_isolation_source: bottom of first year landfast sea ice

ncbi_organism_name: Colwellia sp. MB02u-11

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: USA

ncbi_isolation_source: tomato

ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: Universidade de Sao Paulo


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Australia

ncbi_isolation_source: ear

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Bioplatforms Australia


ncbi_isolation_source: Human Clinical (cystic fibrosis patient)

ncbi_organism_name: Burkholderia dolosa AU0158

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Plant Pathology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Zhejiang University


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: McMaster University


ncbi_organism_name: Parvularcula lutaonensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: China: Guangzhou

ncbi_isolation_source: soil

ncbi_submitter: SouthChina Agriculture University


ncbi_country: Canada

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: Senegal

ncbi_organism_name: Brucella abortus 78/32

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Deinococcus aerophilus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_assembly_name: IMG-taxon 2602042053 annotated assembly

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Colombia: Antioquia; Medellin

ncbi_isolation_source: Rectal swab

ncbi_submitter: University of Antioquia


ncbi_country: Mozambique

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: USA: OH


ncbi_country: Germany: Freising

ncbi_isolation_source: Caecal content

ncbi_organism_name: Metaclostridioides mangenotii

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Peru

ncbi_isolation_source: Pleural Fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WTSI


ncbi_country: India: West Bengal; Burdwan Landfill site

ncbi_organism_name: Rhodococcus sp. BUPNP1

ncbi_submitter: The University of Burdwan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BUPNP1


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: EPFL


ncbi_country: Denmark: Ejby Moelle; Odense

ncbi_isolation_source: wastewater

ncbi_organism_name: Verrucomicrobiaceae bacterium UBA1938

ncbi_submitter: University of Queensland


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-11652

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: China: South China Sea

ncbi_isolation_source: 14-16 cm sediments from a site close to mussel colony in Haima cold seep area in South China Sea

ncbi_submitter: Shandong University


ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Salmonella sp. NW978

ncbi_submitter: Sichuan University


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Penn State


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Biochemistry and Biophysics of the Polish Academy of Sciences


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Salmonella sp. NW12


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of the Witwatersrand


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Universidad Complutense de Madrid


ncbi_submitter: University of Galway


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Halomonas sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Streptomyces sp. NBC_00122

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Pollutimonas sp. H1-120

ncbi_submitter: Pavol Jozef Safarik University in Kosice, Faculty of Science


ncbi_organism_name: Bacillus thuringiensis

ncbi_strain_identifiers: BZR G1

ncbi_submitter: Institute Cytology and Genetics SB RAS


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Candidatus Limenecus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;x__Clostridiaceae incertae sedis;g__Candidatus Limenecus;x__unclassified Candidatus Limenecus;s__Candidatus Limenecus sp.


ncbi_organism_name: Xanthomonas euvesicatoria pv. euvesicatoria

ncbi_submitter: University of Florida


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Universidad de Santiago de Compostela

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Priestia megaterium

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: uncultured Vibrio sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptomyces capoamus


ncbi_organism_name: Salmonella sp. 2021_932

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_organism_name: Pseudomonas lactis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Salmonella sp. 741265082_HSA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: Bacteria sp. RBC016

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured bacterium

ncbi_strain_identifiers: Bacteria sp. RBC016

ncbi_submitter: UNIVERSITY OF WATERLOO


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: AAFC


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: marine sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Shanghai Ocean university


ncbi_assembly_name: freshwater MAG --- AM-sed-core3-D2_bin-324

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: Netherlands: Ooijpolder

ncbi_isolation_source: biomass on anode of bioreactor after 21 days

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Radboud University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Candidatus Desulfacyla sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;g__Candidatus Desulfacyla;x__unclassified Candidatus Desulfacyla;s__Candidatus Desulfacyla sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Wolinella sp.

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Xanthomonas oryzae pv. oryzicola

ncbi_submitter: Cornell University


ncbi_organism_name: Candidatus Cardinium hertigii

ncbi_submitter: Iowa State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Amoebophilaceae;g__Candidatus Cardinium;s__Candidatus Cardinium hertigii


ncbi_organism_name: Sphingorhabdus wooponensis

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: CDC


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_organism_name: Parvularculaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Xin Jiang

ncbi_organism_name: Flavobacteriaceae bacterium 14752

ncbi_submitter: ZheJiang University


ncbi_organism_name: Pantoea ananatis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: South Africa

ncbi_strain_identifiers: NCPPB 890

ncbi_submitter: University of Exeter

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas vasicola;x__Xanthomonas vasicola pv. vasculorum;x__Xanthomonas vasicola pv. vasculorum NCPPB 890


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: healthy adult 3C

ncbi_organism_name: Acetobacter sp. 46_36


ncbi_country: Saudi Arabia: Abo Shoosha reef

ncbi_isolation_source: Porites lutea and Goniastrea edwardsi coral colonies

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: University of Konstanz


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: ETH Zurich


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1638

ncbi_submitter: Broad Institute


ncbi_country: South Africa:Mookgophong

ncbi_isolation_source: gut

ncbi_organism_name: Actinomadura macrotermitis

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Spain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital 12 de Octubre


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Flammeovirgaceae bacterium UBA2366

ncbi_submitter: University of Queensland


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Tifton County; Georgia

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: France

ncbi_isolate: clinical strain from anonymous patient of Limoges Hospital

ncbi_isolation_source: blood culture

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: UNIVERSITY OF OXFORD


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Halomonas sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: United Kingdom: Norwich

ncbi_organism_name: Cellulomonas avistercoris

ncbi_submitter: Quadram Institutte


ncbi_assembly_name: Rumen uncultured genome RUG13910

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Acidovorax sp. KKS102

ncbi_submitter: Tohoku University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Lund University


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: bacterial culture

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center of Infectious and Parasitic Diseases, Sofia Bulgaria


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Catenibacterium sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Scope

ncbi_organism_name: Citrobacter cronae


ncbi_isolation_source: Distal colon


ncbi_country: Ethiopia: Oromiya; West shewa; Holeta

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo


ncbi_assembly_name: freshwater MAG --- D-4_bin-84

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_country: China: Anhui

ncbi_isolation_source: probiotic product

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: south china agriculture university


ncbi_organism_name: Protaetiibacter sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium RIFCSPLOWO2_12_FULL_47_9


ncbi_organism_name: Thermomonas sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus COAS6095

ncbi_submitter: Broad Institute


ncbi_country: Turkey

ncbi_isolation_source: Chicken meat

ncbi_submitter: Erciyes University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus AGEN6033


ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: the seqafrica consortium


ncbi_country: Austria

ncbi_isolation_source: lung

ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: Institute of Microbiology


ncbi_country: China: Hainan Island

ncbi_organism_name: Vibrio sp. SCSIO 43139

ncbi_strain_identifiers: SCSIO 43139

ncbi_submitter: South China Sea Institute of Oceanology,Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__unclassified Vibrio;s__Vibrio sp. SCSIO 43139


ncbi_country: USA: Fayetteville

ncbi_isolation_source: ceca contents

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Arkansas


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Altavista; VA

ncbi_isolation_source: PCB contaminated wastewater treatment lagoon sediment microcosms

ncbi_organism_name: Porphyromonadaceae bacterium

ncbi_submitter: University of Iowa


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA

ncbi_isolation_source: throat

ncbi_organism_name: Burkholderia oklahomensis

ncbi_submitter: University of Michigan


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Brevundimonas sp. UBA6547

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_country: Thailand: Kan Tulee forest; Surat Thani province

ncbi_isolation_source: Peat swamp soil

ncbi_organism_name: Streptomyces tropicalis

ncbi_submitter: Kasetsart University


ncbi_country: Australia: Magnetic Island; QLD

ncbi_isolation_source: feces

ncbi_organism_name: Tannerellaceae bacterium


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Streptococcus sobrinus

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Candidatus Nanopelagicus sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Nanopelagicus;x__unclassified Candidatus Nanopelagicus;s__Candidatus Nanopelagicus sp.


ncbi_organism_name: Streptomyces sp. NPDC089919

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Lethbridge


ncbi_country: Germany

ncbi_isolation_source: trachea

ncbi_organism_name: Bordetella avium

ncbi_submitter: amedes GmbH


ncbi_country: Cambodia: National Pediatric Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Armed Forces Research Institute of Medical Sciences (AFRIMS)


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_country: USA: Arizona

ncbi_isolation_source: trach asp

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northern Arizona University


ncbi_country: China: Beijing

ncbi_isolation_source: wound secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese PLA General Hospital


ncbi_isolation_source: Feral swine feces

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_isolation_source: forestomach

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Alberta


ncbi_organism_name: Paenisporosarcina sp. NPDC076907


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Streptomyces syringium


ncbi_country: Brazil

ncbi_organism_name: Pseudomonas amygdali pv. sesami

ncbi_strain_identifiers: ICMP 7459

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. sesami


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Caecum


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: AR

ncbi_isolation_source: Young Chickens

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: CVM N60336F

ncbi_submitter: FDA


ncbi_country: China

ncbi_organism_name: Arthrobacter sp. HY1533

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Rosettibacter firmus

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EBI


ncbi_isolation_source: Hand Swabs

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: GADVASU, LUDHIANA, PUNJAB, INDIA